From 7aee926e3d05402e244907c6e4dc16523e5c03e5 Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 15:45:28 -0500
Subject: [PATCH 01/14] Update webinar-series.html page for dec2024 entry
expand details, add title for Johanna's presentation
---
webinar-series.html | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/webinar-series.html b/webinar-series.html
index d6e0568..1cf6e65 100644
--- a/webinar-series.html
+++ b/webinar-series.html
@@ -103,7 +103,7 @@
Upcoming Webinars
Friday, December 6, 2024 at 2pm EST
-
ReproNim/INCF Fellowship alum Johanna Bayer (Donders Institute for Brain Cognition and Behavior, The Netherlands) presents some of her recent work. Details to follow.
+
Our featured speaker this month is ReproNim/INCF Fellowship alum Johanna Bayer who joins us from the Predictive Clinical Neuroscience Group,(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit ( pcntoolkit), in her presentation: “Normative modelling using the pcntoolkit – the what when and why.”.
Session will be recorded for those unable to attend, and both Slides and Video Presentation will be made available
Our featured speaker this month is ReproNim/INCF Fellowship alum Johanna Bayer who joins us from the Predictive Clinical Neuroscience Group,(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit ( pcntoolkit), in her presentation: “Normative modelling using the pcntoolkit – the what when and why.”.
+
Our featured speaker this month is ReproNim/INCF Fellowship alum Johanna Bayer who joins us from the Predictive Clinical Neuroscience Group,(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit (pcntoolkit), in her presentation: Normative modelling using the pcntoolkit – the what when and why.”
Session will be recorded for those unable to attend, and both Slides and Video Presentation will be made available
From 77756a9549af18ae78f2b3a43977196325284727 Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 15:57:24 -0500
Subject: [PATCH 03/14] Update webinar-series.html -punctuation formatting
add and/or close quotation marks around titles on recent entries
---
webinar-series.html | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/webinar-series.html b/webinar-series.html
index 766416f..be6ea4f 100644
--- a/webinar-series.html
+++ b/webinar-series.html
@@ -103,7 +103,7 @@
Upcoming Webinars
Friday, December 6, 2024 at 2pm EST
-
Our featured speaker this month is ReproNim/INCF Fellowship alum Johanna Bayer who joins us from the Predictive Clinical Neuroscience Group,(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit (pcntoolkit), in her presentation: Normative modelling using the pcntoolkit – the what when and why.”
+
Our featured speaker this month is ReproNim/INCF Fellowship alum Johanna Bayer who joins us from the Predictive Clinical Neuroscience Group,(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit (pcntoolkit), in her presentation: "Normative modelling using the pcntoolkit – the what when and why.”
Session will be recorded for those unable to attend, and both Slides and Video Presentation will be made available
@@ -133,7 +133,7 @@
Webinar Presentations to Date
Friday, November 1, 2024 at 2pm EDT
-
We welcome Stefano Moia and colleagues Inês Esteves (Instituto Superior Técnico, Universidade de Lisboa - Lisbon), Rebecca Clemens (Northwestern University - Chicago), Mary Miedema (McGill University - Montreal), and Marie-Eve Picard (Université de Montréal - Montreal) for a special introduction to the PhysioPy project: The physiopy Community: working towards accessible and reproducible physiological data integration in neuroimaging studies
+
We welcome Stefano Moia and colleagues Inês Esteves (Instituto Superior Técnico, Universidade de Lisboa - Lisbon), Rebecca Clemens (Northwestern University - Chicago), Mary Miedema (McGill University - Montreal), and Marie-Eve Picard (Université de Montréal - Montreal) for a special introduction to the PhysioPy project: "The physiopy Community: working towards accessible and reproducible physiological data integration in neuroimaging studies"
We are excited to kick off the new academic year with special guest speaker Chris Mungall ! Chris joins us from Berkeley National Lab & Univ. California, where he leads the Biosystems Data Science group. Chris has very considerable expertise in large systems-level computation modeling, systems biology, data science, reusable and interoperable software, machine learning and knowledge graphs, and shares his remarkable perspective with a presentation on "Creating AI-ready datasets using LinkML and biomedical ontologies.
+
We are excited to kick off the new academic year with special guest speaker Chris Mungall ! Chris joins us from Berkeley National Lab & Univ. California, where he leads the Biosystems Data Science group. Chris has very considerable expertise in large systems-level computation modeling, systems biology, data science, reusable and interoperable software, machine learning and knowledge graphs, and shares his remarkable perspective with a presentation on "Creating AI-ready datasets using LinkML and biomedical ontologies."
ReproNim faculty member Yaroslav Halchenko discusses principles, methods, and automation for the scientific operations in reproducible neuroimaging experiments in: 'SciOps from ReproNim/ReproFlow.'
+
ReproNim faculty member Yaroslav Halchenko discusses principles, methods, and automation for the scientific operations in reproducible neuroimaging experiments in: "SciOps from ReproNim/ReproFlow."
From 78594e79ec1e51b0799bcdaf63c3d9a32757dd3d Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 16:28:33 -0500
Subject: [PATCH 04/14] Update index.html for details Dec 2024 webinar
add copy of line used in webinars page (line 177 here)
---
index.html | 1 +
1 file changed, 1 insertion(+)
diff --git a/index.html b/index.html
index 96aa6be..686216e 100644
--- a/index.html
+++ b/index.html
@@ -174,6 +174,7 @@
Breaking News
Friday, December 6, 2024 at 2pm EST
+
Our featured speaker this month is ReproNim/INCF Fellowship alum Johanna Bayer who joins us from the Predictive Clinical Neuroscience Group,(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit (pcntoolkit), in her presentation: "Normative modelling using the pcntoolkit – the what when and why.”
ReproNim/INCF Fellowship alum Johanna Bayer (Donders Institute for Brain Cognition and Behavior, The Netherlands) presents some of her recent work. Details to follow.
Video Conference open to the public, Register in advance for videoconference connect details
Session will be recorded for those unable to attend, and both Slides and Video Presentation will be made available
From d5f2be5db6def6edecbc6f99ad7080d4a4ffd3f8 Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 16:31:25 -0500
Subject: [PATCH 05/14] Update index.html - formatting webinar entry
close italics
remove original line, keep new one for webinar details
---
index.html | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/index.html b/index.html
index 686216e..ce5b2ec 100644
--- a/index.html
+++ b/index.html
@@ -174,8 +174,8 @@
Breaking News
Friday, December 6, 2024 at 2pm EST
-
Our featured speaker this month is ReproNim/INCF Fellowship alum Johanna Bayer who joins us from the Predictive Clinical Neuroscience Group,(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit (pcntoolkit), in her presentation: "Normative modelling using the pcntoolkit – the what when and why.”
-
ReproNim/INCF Fellowship alum Johanna Bayer (Donders Institute for Brain Cognition and Behavior, The Netherlands) presents some of her recent work. Details to follow.
+
Our featured speaker this month is ReproNim/INCF Fellowship alum Johanna Bayer who joins us from the Predictive Clinical Neuroscience Group,(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit (pcntoolkit), in her presentation: "Normative modelling using the pcntoolkit – the what when and why.”
+
Video Conference open to the public, Register in advance for videoconference connect details
Session will be recorded for those unable to attend, and both Slides and Video Presentation will be made available
From cfaa8da13b5a387bf1b3e9c8d5410a63b44aa6fe Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 16:43:13 -0500
Subject: [PATCH 06/14] Update-TEST- on Index page, move webinars/office hours
up
try putting webinar and office hours announcements at top of the Breaking News Section
---
index.html | 66 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 66 insertions(+)
diff --git a/index.html b/index.html
index ce5b2ec..9f25c47 100644
--- a/index.html
+++ b/index.html
@@ -110,6 +110,72 @@
Webinars are held on the first Friday of every month during the academic year, from 2-3pm Eastern Time, and are open to the public.
+
Featured topics will include important efforts in reproducibility, from both ReproNim and others
+
+
Friday, December 6, 2024 at 2pm EST
+
+
Our featured speaker this month is ReproNim/INCF Fellowship alum Johanna Bayer who joins us from the Predictive Clinical Neuroscience Group,(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit (pcntoolkit), in her presentation: "Normative modelling using the pcntoolkit – the what when and why.”
+
+
Video Conference open to the public, Register in advance for videoconference connect details
+
Session will be recorded for those unable to attend, and both Slides and Video Presentation will be made available
+
+
+
Friday, November 1, 2024 at 2pm EDT
+
+
We welcome Stefano Moia and colleagues Inês Esteves (Instituto Superior Técnico, Universidade de Lisboa - Lisbon), Rebecca Clemens (Northwestern University - Chicago), Mary Miedema(McGill University - Montreal), and Marie-Eve Picard (Université de Montréal - Montreal) for a special introduction to the PhysioPy project: The physiopy Community: working towards accessible and reproducible physiological data integration in neuroimaging studies
Our special guest speaker this month is Mike Milham, who joins us from the Child Mind Institute. Mike’s work spans brain development, child and adolescent psychiatry, and the advancement of neuroimaging data sharing initiatives and implementation of big data all in the service of understanding how functional & structural connectivity in brain may underlie mental illness. He discusses some of his very recent work with a presentation on "Moving beyond processing- and analysis-related variation in resting-state functional brain imaging."
We are excited to kick off the new academic year with special guest speaker Chris Mungall! Chris joins us from Berkeley National Lab & Univ. California, where he leads the Biosystems Data Science group. Chris has very considerable expertise in large systems-level computation modeling, systems biology, data science, reusable and interoperable software, machine learning and knowledge graphs, and shares his remarkable perspective with a presentation on "Creating AI-ready datasets using LinkML and biomedical ontologies.
ReproNim Office Hours Program Drop-In for virtual Office Hours on the First Thursday of each month at 1pm Eastern Time,
+ or contact us anytime by email at info@repronim.org to schedule a session.
+
+
Do you have a reproducibility question, challenge or problem?
+
ReproNim faculty are available to provide support and guidance on implementation of reproducibility principles and technologies in your work.
+
Open to all levels of user, whether you are new to reproducibility methods or an established investigator.
+
+
Our next Office Hours Drop-In Session is November 7, 2024 at 1pm Eastern Time
+
+
+
+
Thursday November 7, 2024
+
+
Virtual Drop-in Office Hours
+
+
+
+
Sessions are accessible via Gathertown meeting space:
+
+
If you are new to Gathertown you will be prompted to join (which involves creating a username and password) and an avatar will be created for you that allows you to navigate the space. Upon entering, look for 'ReproNim Dave' in the 'attendees' list on the left, and follow, find, or message him.
+
From 245e92bbc105c5ef9463f3a39d9040ff73bd99e8 Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 16:58:32 -0500
Subject: [PATCH 07/14] Test formatting fix for webinar and office hours copied
sections up top
-the preceding copy and paste of webinar and office hours sections led to ugly formatting.
-try doing two things:
-add one
at beginning/top, preceding the Webinars (line112, following the
already in place for line 111)
+
-subtract one
in line 179 , after the Office Hours
---
index.html | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/index.html b/index.html
index 9f25c47..0bcf14e 100644
--- a/index.html
+++ b/index.html
@@ -176,7 +176,7 @@
ReproNim faculty member Satra Ghosh discusses The Transformative Potential and Challenges of Open Data and Technologies in Neuroscience
From 58c977c5ed78f4f6e686eaec9cd5e0749184df20 Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 17:04:16 -0500
Subject: [PATCH 08/14] remove Test Paste Sections webinars and office hours
unresolved formatting problem for now.
added the
back to line 179.
may or not need one now at top of section with removal of extra sections
---
index.html | 66 +-----------------------------------------------------
1 file changed, 1 insertion(+), 65 deletions(-)
diff --git a/index.html b/index.html
index 0bcf14e..26ca733 100644
--- a/index.html
+++ b/index.html
@@ -110,73 +110,9 @@
Webinars are held on the first Friday of every month during the academic year, from 2-3pm Eastern Time, and are open to the public.
-
Featured topics will include important efforts in reproducibility, from both ReproNim and others
-
-
Friday, December 6, 2024 at 2pm EST
-
-
Our featured speaker this month is ReproNim/INCF Fellowship alum Johanna Bayer who joins us from the Predictive Clinical Neuroscience Group,(Donders Institute and RadboudUMC, Netherlands). Johanna discusses normative modelling of neuroimaging data using the Predictive Clinical Neuroscience toolkit (pcntoolkit), in her presentation: "Normative modelling using the pcntoolkit – the what when and why.”
-
Video Conference open to the public, Register in advance for videoconference connect details
-
Session will be recorded for those unable to attend, and both Slides and Video Presentation will be made available
-
-
-
Friday, November 1, 2024 at 2pm EDT
-
-
We welcome Stefano Moia and colleagues Inês Esteves (Instituto Superior Técnico, Universidade de Lisboa - Lisbon), Rebecca Clemens (Northwestern University - Chicago), Mary Miedema(McGill University - Montreal), and Marie-Eve Picard (Université de Montréal - Montreal) for a special introduction to the PhysioPy project: The physiopy Community: working towards accessible and reproducible physiological data integration in neuroimaging studies
Our special guest speaker this month is Mike Milham, who joins us from the Child Mind Institute. Mike’s work spans brain development, child and adolescent psychiatry, and the advancement of neuroimaging data sharing initiatives and implementation of big data all in the service of understanding how functional & structural connectivity in brain may underlie mental illness. He discusses some of his very recent work with a presentation on "Moving beyond processing- and analysis-related variation in resting-state functional brain imaging."
We are excited to kick off the new academic year with special guest speaker Chris Mungall! Chris joins us from Berkeley National Lab & Univ. California, where he leads the Biosystems Data Science group. Chris has very considerable expertise in large systems-level computation modeling, systems biology, data science, reusable and interoperable software, machine learning and knowledge graphs, and shares his remarkable perspective with a presentation on "Creating AI-ready datasets using LinkML and biomedical ontologies.
ReproNim Office Hours Program Drop-In for virtual Office Hours on the First Thursday of each month at 1pm Eastern Time,
- or contact us anytime by email at info@repronim.org to schedule a session.
-
-
Do you have a reproducibility question, challenge or problem?
-
ReproNim faculty are available to provide support and guidance on implementation of reproducibility principles and technologies in your work.
-
Open to all levels of user, whether you are new to reproducibility methods or an established investigator.
-
-
Our next Office Hours Drop-In Session is November 7, 2024 at 1pm Eastern Time
-
-
-
-
Thursday November 7, 2024
-
-
Virtual Drop-in Office Hours
-
-
-
-
Sessions are accessible via Gathertown meeting space:
-
-
If you are new to Gathertown you will be prompted to join (which involves creating a username and password) and an avatar will be created for you that allows you to navigate the space. Upon entering, look for 'ReproNim Dave' in the 'attendees' list on the left, and follow, find, or message him.
-
ReproNim faculty member Satra Ghosh discusses The Transformative Potential and Challenges of Open Data and Technologies in Neuroscience
From 73e22b122a419855ce567ad4b433e3c82a2ac59e Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 17:39:52 -0500
Subject: [PATCH 09/14] Update index.html page for office hours
test for inclusion of upcoming 2025 dates, jan-june
cancel Dec 2024
---
index.html | 15 +++++++++++----
1 file changed, 11 insertions(+), 4 deletions(-)
diff --git a/index.html b/index.html
index 26ca733..8bb91b5 100644
--- a/index.html
+++ b/index.html
@@ -214,13 +214,20 @@
Breaking News
ReproNim faculty are available to provide support and guidance on implementation of reproducibility principles and technologies in your work.
Open to all levels of user, whether you are new to reproducibility methods or an established investigator.
-
Our next Office Hours Drop-In Session is November 7, 2024 at 1pm Eastern Time
+
Our next regularly scheduled Office Hours Drop-In Session on Thursday, December 5, 2024 ~ Cancelled for this month
+
please note:Office hours are cancelled for this date, but please contact us if you would like to schedule an appointment, we will gladly arrange a time
+
-
Thursday November 7, 2024
-
-
Virtual Drop-in Office Hours
+
+
Upcoming Virtual Drop-in Office Hours
+
Thursday, January 2, 2025 - cancelled for this date, but please contact us if you would like to schedule an appointment, we will gladly arrange a time
+
Thursday, February 6, 2025
+
Thursday, March 6, 2025
+
Thursday, April 3, 2025
+
Thursday, May 1, 2025
+
Thursday, June 5, 2025
From e691549f8a8e2bcf2e4ab6b8e4d48992a2074df4 Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 18:19:31 -0500
Subject: [PATCH 10/14] Update index page- office hours
test option for formatting
---
index.html | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/index.html b/index.html
index 8bb91b5..7c0be98 100644
--- a/index.html
+++ b/index.html
@@ -210,18 +210,19 @@
Breaking News
ReproNim Office Hours Program Drop-In for virtual Office Hours on the First Thursday of each month at 1pm Eastern Time,
or contact us anytime by email at info@repronim.org to schedule a session.
-
Do you have a reproducibility question, challenge or problem?
-
ReproNim faculty are available to provide support and guidance on implementation of reproducibility principles and technologies in your work.
+
Do you have a reproducibility question, challenge or problem? ReproNim faculty are available to provide support and guidance on implementation of reproducibility principles and technologies in your work.
+
Open to all levels of user, whether you are new to reproducibility methods or an established investigator.
-
Our next regularly scheduled Office Hours Drop-In Session on Thursday, December 5, 2024 ~ Cancelled for this month
+
December Office Hours ~ Cancelled for this month
-
please note:Office hours are cancelled for this date, but please contact us if you would like to schedule an appointment, we will gladly arrange a time
+
Please contact us if you would like to schedule an appointment, and we will gladly arrange a time
Upcoming Virtual Drop-in Office Hours
+
Thursday, January 2, 2025 - cancelled for this date, but please contact us if you would like to schedule an appointment, we will gladly arrange a time
Webinars are held on the first Friday of every month during the academic year, from 2-3pm Eastern Time, and are open to the public.
From afb6d22ea6d6e27fd4988f4707147c24d5d86e39 Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 18:30:43 -0500
Subject: [PATCH 13/14] Update index.html- change to webinars header
try Join us for any or all of our 2024-2025 Series
---
index.html | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/index.html b/index.html
index f4da6ba..373dfad 100644
--- a/index.html
+++ b/index.html
@@ -168,7 +168,7 @@
Webinars are held on the first Friday of every month during the academic year, from 2-3pm Eastern Time, and are open to the public.
From c29d40ff6efca312188f1339677418716bc1bb34 Mon Sep 17 00:00:00 2001
From: juliebates <30665526+juliebates@users.noreply.github.com>
Date: Wed, 4 Dec 2024 18:33:19 -0500
Subject: [PATCH 14/14] Update index.html - change header back
..for webinar series, to 'Join us!'
---
index.html | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/index.html b/index.html
index 373dfad..f4da6ba 100644
--- a/index.html
+++ b/index.html
@@ -168,7 +168,7 @@