Update README with preprint and data links

Author: kbseah

README.md

@@ -13,21 +13,24 @@ Aims:
  * Annotate genes from above assemblies, identify clear examples of ambiguous
    stop genetic codes
 
+See our [preprint
+(doi:10.1101/2022.04.12.488043)](https://doi.org/10.1101/2022.04.12.488043) for
+more information.
+
 
 Data
 ----
 
  * Single-cell transcriptome RNAseq from uncultivated marine ciliates, collected from Roscoff, France
- * Single cell MDA DNAseq from above
  * Published datasets downloaded from SRA
 
 
 Data deposition
 ---------------
 
-KIV which data to deposit:
-
- * Primary read data
- * Snakemake pipeline
- * Trinity assemblies (?)
- * Analysis notebooks and outputs
+ * Primary read data from this study: [ENA PRJEB50648](https://www.ebi.ac.uk/ena/browser/view/PRJEB50648)
+ * Snakemake pipelines:
+   * [Transcriptome assembly (this repo)](https://github.com/Swart-lab/karyocode-workflow)
+   * [BUSCO marker workflow](https://github.com/Swart-lab/karyocode-analysis-busco)
+   * [PORC genetic codes workflow](https://github.com/Swart-lab/karyocode-analysis-porc)
+   * [PORC software](https://github.com/Swart-lab/PORC)