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Multi-Epigenomics-ElasticNet-Ordinal-Regression

Ordinal Logistic Regression with ElasticNet Regularization using Multi-Assay Epigenomics Data from CHDI NeuroLINCS Consortium.

Chronology:

  1. ./1_feature_generation_and_pre_processing/deeptools/notebooks/prep_deeptools_multiBamSummary.ipynb
  2. ./1_feature_generation_and_pre_processing/deeptools/deeptools_scripts/multiBamSummary.sh
  3. ./2_PCA_feature_selection/notebooks/PCA.ipynb
  4. ./3_ordinalNet_feature_selection/notebooks/ordinalNet.ipynb
  5. ./4_polr/notebook/polr_ordinal_regression.ipynb
  6. ./5_feature_heatmaps/notebook/heatmaps.ipynb