Error while running refresh_all

[akalsi87]

  File "<snip>/.pixi/envs/default/share/bazel/b26298d3d2cb16163244faa5fa9349eb/execroot/_main/bazel-out/k8-fastbuild/bin/external/hedron_compile_commands~/refresh_all.runfiles/hedron_compile_commands~/refresh_all.py", line 626, in _get_files
    assert source_file_candidates, f"No source files found in compile args: {compile_action.arguments}.\nPlease file an issue with this information!"
           ^^^^^^^^^^^^^^^^^^^^^^
AssertionError: No source files found in compile args: ['external/rules_cc~~cc_configure_extension~local_config_cc/cc_wrapper.sh', '-xc++-header', '-fsyntax-only', '-U_FORTIFY_SOURCE', '-fstack-protector', '-Wall', '-Wunused-but-set-parameter', '-Wno-free-nonheap-object', '-fno-omit-frame-pointer', '-g', '-std=c++17', '-MD', '-MF', 'bazel-out/k8-dbg/bin/external/boost.json~/_objs/boost.json/json.h.d', '-iquote', 'external/boost.json~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.json~', '-iquote', 'external/boost.align~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.align~', '-iquote', 'external/boost.assert~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.assert~', '-iquote', 'external/boost.config~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.config~', '-iquote', 'external/boost.core~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.core~', '-iquote', 'external/boost.static_assert~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.static_assert~', '-iquote', 'external/boost.throw_exception~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.throw_exception~', '-iquote', 'external/boost.container~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.container~', '-iquote', 'external/boost.intrusive~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.intrusive~', '-iquote', 'external/boost.container_hash~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.container_hash~', '-iquote', 'external/boost.describe~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.describe~', '-iquote', 'external/boost.mp11~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.mp11~', '-iquote', 'external/boost.type_traits~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.type_traits~', '-iquote', 'external/boost.move~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.move~', '-iquote', 'external/boost.system~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.system~', '-iquote', 'external/boost.variant2~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.variant2~', '-iquote', 'external/boost.winapi~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.winapi~', '-iquote', 'external/boost.predef~', '-iquote', 'bazel-out/k8-dbg/bin/external/boost.predef~', '-isystem', 'external/boost.json~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.json~/include', '-isystem', 'external/boost.align~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.align~/include', '-isystem', 'external/boost.assert~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.assert~/include', '-isystem', 'external/boost.config~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.config~/include', '-isystem', 'external/boost.core~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.core~/include', '-isystem', 'external/boost.static_assert~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.static_assert~/include', '-isystem', 'external/boost.throw_exception~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.throw_exception~/include', '-isystem', 'external/boost.container~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.container~/include', '-isystem', 'external/boost.intrusive~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.intrusive~/include', '-isystem', 'external/boost.container_hash~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.container_hash~/include', '-isystem', 'external/boost.describe~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.describe~/include', '-isystem', 'external/boost.mp11~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.mp11~/include', '-isystem', 'external/boost.type_traits~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.type_traits~/include', '-isystem', 'external/boost.move~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.move~/include', '-isystem', 'external/boost.system~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.system~/include', '-isystem', 'external/boost.variant2~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.variant2~/include', '-isystem', 'external/boost.winapi~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.winapi~/include', '-isystem', 'external/boost.predef~/include', '-isystem', 'bazel-out/k8-dbg/bin/external/boost.predef~/include', '-std=gnu++17', '-Wall', '-Wextra', '-Wpedantic', '-Werror', '-Wunused-parameter', '-Wunused-function', '-Wunused-variable', '-Wsign-compare', '-Wimplicit-fallthrough', '-Wcast-qual', '-Wcast-function-type', '-Wcast-align', '-Wformat-nonliteral', '-Wformat-security', '-Wformat', '-Wodr', '-Wpointer-arith', '-Wstrict-aliasing', '-Wswitch', '-Wsizeof-pointer-memaccess', '-Wstrict-overflow', '-ggdb', '-fsanitize=address', '-fsanitize=leak', '-fsanitize=undefined', '-fno-sanitize=vptr', '-fno-omit-frame-pointer', '-fprofile-arcs', '-ftest-coverage', '-I/proc/self/cwd/.pixi/envs/default/lib/gcc/x86_64-conda-linux-gnu/14.2.0/include', '-Wno-error', '-c', 'external/boost.json~/include/boost/json.hpp', '-o', 'bazel-out/k8-dbg/bin/external/boost.json~/_objs/boost.json/json.h.processed', '-Wno-builtin-macro-redefined', '-D__DATE__="redacted"', '-D__TIMESTAMP__="redacted"', '-D__TIME__="redacted"'].
Please file an issue with this information!

[johanzwarteveld]

i have a equivalent issue, when executing bazel run :refresh_compile_commands.

#241 let me to the following solution / workaround: #219