Merge branch 'load-fractures-data'

Author: michaelgrund

.codecov.yml

@@ -0,0 +1,3 @@
+/config.local
+/tmp
+/cache

.dvc/.gitignore

@@ -0,0 +1,4 @@
+[core]
+    remote = upstream
+['remote "upstream"']
+    url = https://dagshub.com/GenericMappingTools/pygmt.dvc

.dvc/config

@@ -0,0 +1,3 @@
+# Add patterns of files dvc should ignore, which could improve
+# the performance. Learn more at
+# https://dvc.org/doc/user-guide/dvcignore

.dvcignore

@@ -1,6 +1,9 @@
 ---
 name: Bug report
 about: Report a problem/bug to help us improve
+title: ''
+labels: bug
+assignees: ''
 
 ---
 

.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,5 @@
+blank_issues_enabled: true
+contact_links:
+  - name: GMT Community Forum
+    url: https://forum.generic-mapping-tools.org/c/questions/pygmt-q-a
+    about: Please ask questions here or find answers to common problems.

.github/ISSUE_TEMPLATE/config.yml

@@ -1,6 +1,9 @@
 ---
 name: Feature request
 about: Request the addition of a new feature/functionality
+title: ''
+labels: feature request
+assignees: ''
 
 ---
 

.github/ISSUE_TEMPLATE/feature_request.md

@@ -1,24 +1,35 @@
 ---
 name: PyGMT release checklist
 about: Checklist for a new PyGMT release.
-title: 'Release PyGMT x.x.x'
-labels: 'maintenance'
+title: Release PyGMT vX.Y.Z
+labels: maintenance
 assignees: ''
 
 ---
 
-**Release**: [v0.x.x](https://github.com/GenericMappingTools/pygmt/milestones/0.x.x)
+**Release**: [v0.x.x](https://github.com/GenericMappingTools/pygmt/milestones/?)
 **Scheduled Date**: YYYY/MM/DD
+**Pull request due date**: YYYY/MM/DD
+
+**Priority PRs/issues to complete prior to release**
+- [ ] Wrap X ()
+- [ ] Wrap Y ()
 
 **Before release**:
 - [ ] Reserve a DOI on [Zenodo](https://zenodo.org) by clicking on "New Version"
-- [ ] Update Changelog
-- [ ] Add a new entry in `doc/_static/version_switch.js` for documentation switcher
-- [ ] Update citation information https://github.com/GenericMappingTools/pygmt#citing-pygmt
+- [ ] Finish up 'Changelog entry for v0.x.x' Pull Request:
+  - [ ] Add a new entry in `doc/_static/version_switch.js` for documentation switcher
+  - [ ] Update citation information https://github.com/GenericMappingTools/pygmt#citing-pygmt
+  - [ ] Add the documentation link https://github.com/GenericMappingTools/pygmt#documentation-for-other-versions
+  - [ ] Add compatibility information https://github.com/GenericMappingTools/pygmt#compatibility-with-python-and-gmt-versions
+  - [ ] Copy draft changelog from Release Drafter and edit it to look nice
 
 **Release**:
-- [ ] Go to [GitHub Release](https://github.com/GenericMappingTools/pygmt/releases) and make a release, this will automatically create a tag too
-- [ ] Manually upload the pygmt-vX.Y.Z.zip file to https://zenodo.org/deposit, make sure you file it under the correct reserved DOI
+- [ ] At the [PyGMT release page on GitHub](https://github.com/GenericMappingTools/pygmt/releases):
+  - [ ] Edit the draft release notes with the finalized changelog
+  - [ ] Set the tag version and release title to vX.Y.Z
+  - [ ] Make a release by clicking the 'Publish Release' button, this will automatically create a tag too
+- [ ] Manually upload the pygmt-vX.Y.Z.zip file to https://zenodo.org/deposit, ensure that it is filed under the correct reserved DOI
 
 **After release**:
 - [ ] Update conda-forge [pygmt-feedstock](https://github.com/conda-forge/pygmt-feedstock) [Usually done automatically by conda-forge's bot]
@@ -27,7 +38,7 @@ assignees: ''
   - [ ] GMT [forum](https://forum.generic-mapping-tools.org/c/news/)
   - [ ] [Major/Minor releases only] GMT [website](https://github.com/GenericMappingTools/website) (News)
   - [ ] [ResearchGate](https://www.researchgate.net/project/PyGMT-A-Python-interface-for-the-Generic-Mapping-Tools)
-
+  - [ ] [Twitter](https://twitter.com/gmt_dev)
 ---
 
 - [ ] Party :tada: (don't tick before all other checkboxes are ticked!)

.github/ISSUE_TEMPLATE/release_checklist.md

@@ -0,0 +1,19 @@
+codecov:
+  notify:
+    require_ci_to_pass: no
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto  # increase overall coverage on each pull request
+        threshold: 0.25%  # Allow the coverage to drop by X%
+        if_not_found: success
+        if_ci_failed: failure
+    patch:
+      default:
+        target: 90%  # >=90% of new changes should be tested
+        if_not_found: success
+        if_ci_failed: failure
+
+comment: off

.github/codecov.yml

@@ -0,0 +1,17 @@
+# Set update schedule for GitHub Actions
+
+version: 2
+updates:
+
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      # Check for updates to GitHub Actions every weekday
+      interval: "weekly"
+      day: "tuesday"
+    # Allow up to 2 open pull requests at a time
+    open-pull-requests-limit: 2
+    # Specify labels for pull requests
+    labels:
+      - "maintenance"
+      - "skip-changelog"

.github/dependabot.yml

@@ -1,30 +1,38 @@
-name-template: 'v$NEXT_PATCH_VERSION'
-tag-template: 'v$NEXT_PATCH_VERSION'
+name-template: 'v$RESOLVED_VERSION'
+tag-template: 'v$RESOLVED_VERSION'
+version-resolver:
+  minor:
+    labels:
+      - 'feature'
+  default: patch
 categories:
   - title: 'New Features'
     label: 'feature'
   - title: 'Enhancements'
     label: 'enhancement'
-  - title: 'Documentation'
-    label: 'documentation'
+  - title: 'Deprecations'
+    label: 'deprecation'
   - title: 'Bug Fixes'
     label: 'bug'
+  - title: 'Documentation'
+    label: 'documentation'
   - title: 'Maintenance'
     label: 'maintenance'
-  - title: 'Deprecations'
-    label: 'deprecation'
 exclude-labels:
   - 'skip-changelog'
-change-template: '* $TITLE (#$NUMBER)'
+category-template: '### $TITLE'
+change-template: '* $TITLE ([#$NUMBER]($URL))'
 template: |
-  [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3781524.svg)](https://doi.org/10.5281/zenodo.3781524)
+  ## Release v$RESOLVED_VERSION (20YY/MM/DD)
+
+  [![Digital Object Identifier for PyGMT v$RESOLVED_VERSION](https://zenodo.org/badge/DOI/10.5281/zenodo.3781524.svg)](https://doi.org/10.5281/zenodo.3781524)
 
-  ## Highlights
+  ### Highlights
 
   *
 
   $CHANGES
 
-  ## Contributors
+  ### Contributors
 
   $CONTRIBUTORS

.github/release-drafter.yml

@@ -12,31 +12,39 @@ jobs:
   gmt_cache:
     name: Cache GMT artifacts
     runs-on: macOS-latest
+    defaults:
+      run:
+        shell: bash -l {0}
 
     steps:
       # Setup Miniconda
       - name: Setup Miniconda
-        uses: conda-incubator/setup-miniconda@v2.0.0
+        uses: conda-incubator/setup-miniconda@v2.0.1
         with:
           channels: conda-forge
           miniconda-version: "latest"
 
       # Install GMT
       - name: Install GMT
-        shell: bash -l {0}
         run: conda install -c conda-forge gmt=6.1.1
 
       # Download remote files
       - name: Download remote data
-        shell: bash -l {0}
         run: |
           gmt which -Ga @earth_relief_10m_p @earth_relief_10m_g \
                         @earth_relief_30m_p @earth_relief_30m_g \
                         @earth_relief_01d_p @earth_relief_01d_g \
                         @earth_relief_05m_p @earth_relief_05m_g
+          # Download one tile of the 03s srtm data.
+          # @N35E135.earth_relief_03s_g.nc is for internal use only.
+          # The naming scheme may change.
+          # DO NOT USE IT IN SCRIPTS.
+          gmt which -Ga @N35E135.earth_relief_03s_g.nc
+          # @srtm_tiles.nc is needed for 03s and 01s relief data
+          gmt which -Ga @srtm_tiles.nc
           gmt which -Ga @ridge.txt @Table_5_11.txt @test.dat.nc \
                         @tut_bathy.nc @tut_quakes.ngdc @tut_ship.xyz \
-                        @usgs_quakes_22.txt
+                        @usgs_quakes_22.txt @fractures_06.txt
 
       # Upload the downloaded files as artifacts to GitHub
       - name: Upload artifacts to GitHub

.github/workflows/cache_data.yaml

@@ -0,0 +1,58 @@
+# This workflow checks the links in plaintext and HTML files
+name: Check Links
+
+on:
+  # Uncomment the 'pull_request' line below to trigger the workflow in PR
+  # pull_request:
+  # Schedule runs on 12 noon every Sunday
+  schedule:
+    - cron: '0 12 * * 0'
+
+jobs:
+  check_links:
+    name: Check Links
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout the repository
+      uses: actions/checkout@v2.3.4
+      with:
+        path: repository
+
+    - name: Checkout the documentation
+      uses: actions/checkout@v2.3.4
+      with:
+        ref: gh-pages
+        path: documentation
+
+    - name: Link Checker
+      uses: lycheeverse/lychee-action@v1.0.6
+      with:
+        # 429: Too many requests
+        args: >
+          --accept 429
+          --exclude "^https://doi.org/10.5281/zenodo$"
+          --exclude "^https://zenodo.org/badge/DOI/$"
+          --exclude "^https://zenodo.org/badge/DOI/10.5281/zenodo$"
+          --exclude "^https://github.com/GenericMappingTools/pygmt/pull/[0-9]*$"
+          --exclude "^https://github.com/GenericMappingTools/pygmt/issues/[0-9]*$"
+          --exclude "^https://www.generic-mapping-tools.org/_static/gmt-logo.png/$"
+          --exclude "^https://www.generic-mapping-tools.org/_static/gmt-logo.png/n/n$"
+          --exclude "^``@ridge.txt$"
+          --exclude "^git"
+          --exclude "^file://"
+          --exclude "^https://docs.generic-mapping-tools.org/latest/%s$"
+          --exclude "https://hackmd.io/@pygmt"
+          --verbose
+          "repository/**/*.rst"
+          "repository/**/*.md"
+          "repository/**/*.py"
+          "documentation/dev/**/*.html"
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+    - name: Create Issue From File
+      uses: peter-evans/create-issue-from-file@v2.3.2
+      with:
+        title: Link Checker Report
+        content-filepath: ./lychee/out.md