From be7719263e18d1052c3272a8b7c91d76e1b09a6b Mon Sep 17 00:00:00 2001 From: YaoYinYing <33014714+YaoYinYing@users.noreply.github.com> Date: Tue, 18 Mar 2025 01:43:12 +0800 Subject: [PATCH 1/3] sidebarloader --- docs/nav.html | 338 +++++++++++++++++++++++++++++++++ docs/scripts/sidebar_loader.js | 40 ++++ 2 files changed, 378 insertions(+) create mode 100644 docs/nav.html create mode 100644 docs/scripts/sidebar_loader.js diff --git a/docs/nav.html b/docs/nav.html new file mode 100644 index 0000000..b25397d --- /dev/null +++ b/docs/nav.html @@ -0,0 +1,338 @@ + + + + + +
+ Format Conversion +
+ +
+ -Combine FASTA
+ -EMBL to FASTA
+ -EMBL Feature Extractor
+ -EMBL Trans Extractor
+ -Filter DNA
+ -Filter Protein
+ -GenBank to FASTA
+ -GenBank Feature Extractor
+ -GenBank Trans Extractor
+ -One to Three
+ -Range Extractor DNA
+ -Range Extractor Protein
+ -Reverse Complement
+ -Split Codons
+ -Split FASTA
+ -Three to One
+ -Window Extractor DNA
+ -Window Extractor Protein +
+ +
+ Sequence Analysis +
+ +
+ -Codon Plot
+ -Codon Usage
+ -CpG Islands
+ -DNA Molecular Weight
+ -DNA Pattern Find
+ -DNA Stats
+ -Fuzzy Search DNA
+ -Fuzzy Search Protein
+ -Ident and Sim
+ -Multi Rev Trans
+ -Mutate for Digest
+ -ORF Finder
+ -Pairwise Align Codons
+ -Pairwise Align DNA
+ -Pairwise Align Protein
+ -PCR Primer Stats
+ -PCR Products
+ -Protein GRAVY
+ -Protein Isoelectric Point
+ -Protein Molecular Weight
+ -Protein Pattern Find
+ -Protein Stats
+ -Restriction Digest
+ -Restriction Summary
+ -Reverse Translate
+ -Translate +
+ +
+ Sequence Figures +
+ +
+ -Color Align Conservation
+ -Color Align Properties
+ -Group DNA
+ -Group Protein
+ -Primer Map
+ -Restriction Map
+ -Translation Map +
+ +
+ Random Sequences +
+ +
+ -Mutate DNA
+ -Mutate Protein
+ -Random Coding DNA
+ -Random DNA Sequence
+ -Random DNA Regions
+ -Random Protein Sequence
+ -Random Protein Regions
+ -Sample DNA
+ -Sample Protein
+ -Shuffle DNA
+ -Shuffle Protein +
+ +
+ Miscellaneous +
+ +
+ -Home
+ -IUPAC codes
+ -Genetic codes
+ -Browser compatibility
+ -Mirror this site
+ -Use this site off-line
+ -About this site
+ -Acknowledgments
+ -Reference +
+ + +
+
+ The Sequence Manipulation Suite Copyright © 2000, 2004 Paul + Stothard. Send questions and comments to stothard@ualberta.ca +
+ +
+
+ home +
+
+ + \ No newline at end of file diff --git a/docs/scripts/sidebar_loader.js b/docs/scripts/sidebar_loader.js new file mode 100644 index 0000000..0c634b3 --- /dev/null +++ b/docs/scripts/sidebar_loader.js @@ -0,0 +1,40 @@ +// scripts/sidebar_loader.js + +// Function to load the sidebar/navigation dynamically +function loadSidebar(navPath = 'nav.html', placeholderId = 'nav-placeholder') { + fetch(navPath) + .then(response => { + if (!response.ok) { + throw new Error(`HTTP error ${response.status}`); + } + return response.text(); + }) + .then(data => { + // Inject nav content + const navContainer = document.getElementById(placeholderId); + if (navContainer) { + navContainer.innerHTML = data; + + // Highlight current page link + const currentPage = location.pathname.split('/').pop(); + const links = navContainer.querySelectorAll('a'); + + links.forEach(link => { + const href = link.getAttribute('href'); + if (href === currentPage) { + link.style.fontWeight = 'bold'; + link.style.color = '#FF0000'; // Customize highlight color + } + }); + } else { + console.error(`Element with id '${placeholderId}' not found.`); + } + }) + .catch(error => { + console.error('Sidebar failed to load:', error); + }); + } + + // Immediately invoke when script loads + document.addEventListener('DOMContentLoaded', () => loadSidebar()); + \ No newline at end of file From f2b45b76a9e450c7423fa8d824f2979916618791 Mon Sep 17 00:00:00 2001 From: YaoYinYing <33014714+YaoYinYing@users.noreply.github.com> Date: Tue, 18 Mar 2025 01:44:39 +0800 Subject: [PATCH 2/3] add new js imports --- docs/about.html | 1 + docs/acknowledgments.html | 1 + docs/browser_compat.html | 1 + docs/codon_plot.html | 1 + docs/codon_usage.html | 1 + docs/color_align_cons.html | 1 + docs/color_align_prop.html | 1 + docs/combine_fasta.html | 1 + docs/cpg_islands.html | 1 + docs/dna_mw.html | 1 + docs/dna_pattern.html | 1 + docs/dna_stats.html | 1 + docs/embl_fasta.html | 1 + docs/embl_feat.html | 1 + docs/embl_trans.html | 1 + docs/filter_dna.html | 1 + docs/filter_protein.html | 1 + docs/fuzzy_search_dna.html | 1 + docs/fuzzy_search_protein.html | 1 + docs/genbank_fasta.html | 1 + docs/genbank_feat.html | 1 + docs/genbank_trans.html | 1 + docs/genetic_code.html | 1 + docs/gnu_license.html | 1 + docs/group_dna.html | 1 + docs/group_protein.html | 1 + docs/ident_sim.html | 1 + docs/index.html | 1 + docs/iupac.html | 1 + docs/mirror.html | 1 + docs/multi_rev_trans.html | 1 + docs/mutate_dna.html | 1 + docs/mutate_for_digest.html | 1 + docs/mutate_protein.html | 1 + docs/one_to_three.html | 1 + docs/orf_find.html | 1 + docs/pairwise_align_codons.html | 1 + docs/pairwise_align_dna.html | 1 + docs/pairwise_align_protein.html | 1 + docs/pcr_primer_stats.html | 1 + docs/pcr_products.html | 1 + docs/primer_map.html | 1 + docs/protein_gravy.html | 1 + docs/protein_iep.html | 1 + docs/protein_mw.html | 1 + docs/protein_pattern.html | 1 + docs/protein_stats.html | 1 + docs/random_coding_dna.html | 1 + docs/random_dna.html | 1 + docs/random_dna_regions.html | 1 + docs/random_protein.html | 1 + docs/random_protein_regions.html | 1 + docs/range_extract_dna.html | 1 + docs/range_extract_protein.html | 1 + docs/reference.html | 1 + docs/rest_digest.html | 1 + docs/rest_map.html | 1 + docs/rest_summary.html | 1 + docs/rev_comp.html | 1 + docs/rev_trans.html | 1 + docs/sample_dna.html | 1 + docs/sample_protein.html | 1 + docs/search_patterns.html | 1 + docs/shuffle_dna.html | 1 + docs/shuffle_protein.html | 1 + docs/split_codons.html | 1 + docs/split_fasta.html | 1 + docs/three_to_one.html | 1 + docs/trans_map.html | 1 + docs/translate.html | 1 + docs/window_extract_dna.html | 1 + docs/window_extract_protein.html | 1 + 72 files changed, 72 insertions(+) diff --git a/docs/about.html b/docs/about.html index 7d8e477..9ea956b 100644 --- a/docs/about.html +++ b/docs/about.html @@ -5,6 +5,7 @@ About + diff --git a/docs/acknowledgments.html b/docs/acknowledgments.html index df73e15..2addba0 100644 --- a/docs/acknowledgments.html +++ b/docs/acknowledgments.html @@ -5,6 +5,7 @@ About + diff --git a/docs/browser_compat.html b/docs/browser_compat.html index 1b9b3dc..20397f6 100644 --- a/docs/browser_compat.html +++ b/docs/browser_compat.html @@ -5,6 +5,7 @@ Browser compatibility + diff --git a/docs/codon_plot.html b/docs/codon_plot.html index 989fda5..51c6de9 100644 --- a/docs/codon_plot.html +++ b/docs/codon_plot.html @@ -7,6 +7,7 @@ + diff --git a/docs/codon_usage.html b/docs/codon_usage.html index 2dbe273..a84afe8 100644 --- a/docs/codon_usage.html +++ b/docs/codon_usage.html @@ -8,6 +8,7 @@ + diff --git a/docs/color_align_cons.html b/docs/color_align_cons.html index 40cfe5e..dda73e1 100644 --- a/docs/color_align_cons.html +++ b/docs/color_align_cons.html @@ -7,6 +7,7 @@ + diff --git a/docs/color_align_prop.html b/docs/color_align_prop.html index fd352f3..8c75916 100644 --- a/docs/color_align_prop.html +++ b/docs/color_align_prop.html @@ -7,6 +7,7 @@ + diff --git a/docs/combine_fasta.html b/docs/combine_fasta.html index 283a737..75ce325 100644 --- a/docs/combine_fasta.html +++ b/docs/combine_fasta.html @@ -7,6 +7,7 @@ + diff --git a/docs/cpg_islands.html b/docs/cpg_islands.html index 72be0c2..f92f04b 100644 --- a/docs/cpg_islands.html +++ b/docs/cpg_islands.html @@ -7,6 +7,7 @@ + diff --git a/docs/dna_mw.html b/docs/dna_mw.html index 0a33e21..cc77c42 100644 --- a/docs/dna_mw.html +++ b/docs/dna_mw.html @@ -7,6 +7,7 @@ + diff --git a/docs/dna_pattern.html b/docs/dna_pattern.html index 3d15062..61d2419 100644 --- a/docs/dna_pattern.html +++ b/docs/dna_pattern.html @@ -7,6 +7,7 @@ + diff --git a/docs/dna_stats.html b/docs/dna_stats.html index cea8eb4..45b2ee5 100644 --- a/docs/dna_stats.html +++ b/docs/dna_stats.html @@ -7,6 +7,7 @@ + diff --git a/docs/embl_fasta.html b/docs/embl_fasta.html index 8e4eb69..7c36655 100644 --- a/docs/embl_fasta.html +++ b/docs/embl_fasta.html @@ -7,6 +7,7 @@ + diff --git a/docs/embl_feat.html b/docs/embl_feat.html index 25eec4c..457c91c 100644 --- a/docs/embl_feat.html +++ b/docs/embl_feat.html @@ -7,6 +7,7 @@ + diff --git a/docs/embl_trans.html b/docs/embl_trans.html index 7d64188..587b180 100644 --- a/docs/embl_trans.html +++ b/docs/embl_trans.html @@ -7,6 +7,7 @@ + diff --git a/docs/filter_dna.html b/docs/filter_dna.html index 0daee8d..14e5ed3 100644 --- a/docs/filter_dna.html +++ b/docs/filter_dna.html @@ -7,6 +7,7 @@ + diff --git a/docs/filter_protein.html b/docs/filter_protein.html index d8f7588..ee24880 100644 --- a/docs/filter_protein.html +++ b/docs/filter_protein.html @@ -7,6 +7,7 @@ + diff --git a/docs/fuzzy_search_dna.html b/docs/fuzzy_search_dna.html index c70bd53..9fe6b2a 100644 --- a/docs/fuzzy_search_dna.html +++ b/docs/fuzzy_search_dna.html @@ -8,6 +8,7 @@ + diff --git a/docs/fuzzy_search_protein.html b/docs/fuzzy_search_protein.html index 0a30d7d..345907a 100644 --- a/docs/fuzzy_search_protein.html +++ b/docs/fuzzy_search_protein.html @@ -11,6 +11,7 @@ src="scripts/fuzzy_search_protein.js" > + diff --git a/docs/genbank_fasta.html b/docs/genbank_fasta.html index a6cd7e6..ca732dd 100644 --- a/docs/genbank_fasta.html +++ b/docs/genbank_fasta.html @@ -7,6 +7,7 @@ + diff --git a/docs/genbank_feat.html b/docs/genbank_feat.html index c85c71d..c5b6e45 100644 --- a/docs/genbank_feat.html +++ b/docs/genbank_feat.html @@ -7,6 +7,7 @@ + diff --git a/docs/genbank_trans.html b/docs/genbank_trans.html index 6ff7497..6467039 100644 --- a/docs/genbank_trans.html +++ b/docs/genbank_trans.html @@ -7,6 +7,7 @@ + diff --git a/docs/genetic_code.html b/docs/genetic_code.html index 205804f..e26b960 100644 --- a/docs/genetic_code.html +++ b/docs/genetic_code.html @@ -5,6 +5,7 @@ Genetic codes + diff --git a/docs/gnu_license.html b/docs/gnu_license.html index 8bdb547..0be44cb 100644 --- a/docs/gnu_license.html +++ b/docs/gnu_license.html @@ -5,6 +5,7 @@ Sequence Manipulation Suite - License + diff --git a/docs/group_dna.html b/docs/group_dna.html index 8858d94..687c6bd 100644 --- a/docs/group_dna.html +++ b/docs/group_dna.html @@ -7,6 +7,7 @@ + diff --git a/docs/group_protein.html b/docs/group_protein.html index 002f2bd..ea0b61e 100644 --- a/docs/group_protein.html +++ b/docs/group_protein.html @@ -7,6 +7,7 @@ + diff --git a/docs/ident_sim.html b/docs/ident_sim.html index 5bfd308..765c3c6 100644 --- a/docs/ident_sim.html +++ b/docs/ident_sim.html @@ -7,6 +7,7 @@ + diff --git a/docs/index.html b/docs/index.html index 771ad74..a2a3e59 100644 --- a/docs/index.html +++ b/docs/index.html @@ -5,6 +5,7 @@ The Sequence Manipulation Suite + diff --git a/docs/iupac.html b/docs/iupac.html index 8102590..555d838 100644 --- a/docs/iupac.html +++ b/docs/iupac.html @@ -5,6 +5,7 @@ IUPAC codes + diff --git a/docs/mirror.html b/docs/mirror.html index c98dddf..4f21827 100644 --- a/docs/mirror.html +++ b/docs/mirror.html @@ -5,6 +5,7 @@ Download + diff --git a/docs/multi_rev_trans.html b/docs/multi_rev_trans.html index 818410d..2ab8248 100644 --- a/docs/multi_rev_trans.html +++ b/docs/multi_rev_trans.html @@ -7,6 +7,7 @@ + diff --git a/docs/mutate_dna.html b/docs/mutate_dna.html index bfd4475..6c3b26d 100644 --- a/docs/mutate_dna.html +++ b/docs/mutate_dna.html @@ -7,6 +7,7 @@ + diff --git a/docs/mutate_for_digest.html b/docs/mutate_for_digest.html index 99e6004..eb4a3ff 100644 --- a/docs/mutate_for_digest.html +++ b/docs/mutate_for_digest.html @@ -8,6 +8,7 @@ + diff --git a/docs/mutate_protein.html b/docs/mutate_protein.html index b95e6d8..f7a85d4 100644 --- a/docs/mutate_protein.html +++ b/docs/mutate_protein.html @@ -7,6 +7,7 @@ + diff --git a/docs/one_to_three.html b/docs/one_to_three.html index 3286610..bbb570a 100644 --- a/docs/one_to_three.html +++ b/docs/one_to_three.html @@ -7,6 +7,7 @@ + diff --git a/docs/orf_find.html b/docs/orf_find.html index 4c728bd..5b8fe80 100644 --- a/docs/orf_find.html +++ b/docs/orf_find.html @@ -8,6 +8,7 @@ + diff --git a/docs/pairwise_align_codons.html b/docs/pairwise_align_codons.html index a7933a3..1a42554 100644 --- a/docs/pairwise_align_codons.html +++ b/docs/pairwise_align_codons.html @@ -18,6 +18,7 @@ type="text/javascript" src="scripts/align_pair_codons_quad.js" > + diff --git a/docs/pairwise_align_dna.html b/docs/pairwise_align_dna.html index 48bffca..60ff0cb 100644 --- a/docs/pairwise_align_dna.html +++ b/docs/pairwise_align_dna.html @@ -9,6 +9,7 @@ + diff --git a/docs/pairwise_align_protein.html b/docs/pairwise_align_protein.html index 259fb83..1181560 100644 --- a/docs/pairwise_align_protein.html +++ b/docs/pairwise_align_protein.html @@ -12,6 +12,7 @@ > + diff --git a/docs/pcr_primer_stats.html b/docs/pcr_primer_stats.html index c1634f7..0c34392 100644 --- a/docs/pcr_primer_stats.html +++ b/docs/pcr_primer_stats.html @@ -8,6 +8,7 @@ + diff --git a/docs/pcr_products.html b/docs/pcr_products.html index 1439e68..9b84ade 100644 --- a/docs/pcr_products.html +++ b/docs/pcr_products.html @@ -7,6 +7,7 @@ + diff --git a/docs/primer_map.html b/docs/primer_map.html index 3e956f4..9d83a7a 100644 --- a/docs/primer_map.html +++ b/docs/primer_map.html @@ -12,6 +12,7 @@ > + diff --git a/docs/protein_gravy.html b/docs/protein_gravy.html index 42be8b8..b259645 100644 --- a/docs/protein_gravy.html +++ b/docs/protein_gravy.html @@ -7,6 +7,7 @@ + diff --git a/docs/protein_iep.html b/docs/protein_iep.html index db3893f..8369cb3 100644 --- a/docs/protein_iep.html +++ b/docs/protein_iep.html @@ -7,6 +7,7 @@ + diff --git a/docs/protein_mw.html b/docs/protein_mw.html index 5f95301..2f64b0a 100644 --- a/docs/protein_mw.html +++ b/docs/protein_mw.html @@ -7,6 +7,7 @@ + diff --git a/docs/protein_pattern.html b/docs/protein_pattern.html index 0ff4667..2a4f625 100644 --- a/docs/protein_pattern.html +++ b/docs/protein_pattern.html @@ -7,6 +7,7 @@ + diff --git a/docs/protein_stats.html b/docs/protein_stats.html index 4bdd7e2..589b25a 100644 --- a/docs/protein_stats.html +++ b/docs/protein_stats.html @@ -7,6 +7,7 @@ + diff --git a/docs/random_coding_dna.html b/docs/random_coding_dna.html index 31ec590..e3ed539 100644 --- a/docs/random_coding_dna.html +++ b/docs/random_coding_dna.html @@ -8,6 +8,7 @@ + diff --git a/docs/random_dna.html b/docs/random_dna.html index 6407932..13e460b 100644 --- a/docs/random_dna.html +++ b/docs/random_dna.html @@ -7,6 +7,7 @@ + diff --git a/docs/random_dna_regions.html b/docs/random_dna_regions.html index e4b2efc..4cc77eb 100644 --- a/docs/random_dna_regions.html +++ b/docs/random_dna_regions.html @@ -8,6 +8,7 @@ + diff --git a/docs/random_protein.html b/docs/random_protein.html index 24e1edb..d7a672c 100644 --- a/docs/random_protein.html +++ b/docs/random_protein.html @@ -7,6 +7,7 @@ + diff --git a/docs/random_protein_regions.html b/docs/random_protein_regions.html index 542fb84..6f9a628 100644 --- a/docs/random_protein_regions.html +++ b/docs/random_protein_regions.html @@ -14,6 +14,7 @@ type="text/javascript" src="scripts/range_extract_protein.js" > + diff --git a/docs/range_extract_dna.html b/docs/range_extract_dna.html index 7813bb8..e65b2c9 100644 --- a/docs/range_extract_dna.html +++ b/docs/range_extract_dna.html @@ -7,6 +7,7 @@ + diff --git a/docs/range_extract_protein.html b/docs/range_extract_protein.html index ee18922..7471ac5 100644 --- a/docs/range_extract_protein.html +++ b/docs/range_extract_protein.html @@ -10,6 +10,7 @@ type="text/javascript" src="scripts/range_extract_protein.js" > + diff --git a/docs/reference.html b/docs/reference.html index 2675fad..8e46955 100644 --- a/docs/reference.html +++ b/docs/reference.html @@ -5,6 +5,7 @@ Reference + diff --git a/docs/rest_digest.html b/docs/rest_digest.html index e459679..82c744e 100644 --- a/docs/rest_digest.html +++ b/docs/rest_digest.html @@ -7,6 +7,7 @@ + diff --git a/docs/rest_map.html b/docs/rest_map.html index 69b548d..b2553e9 100644 --- a/docs/rest_map.html +++ b/docs/rest_map.html @@ -12,6 +12,7 @@ > + diff --git a/docs/rest_summary.html b/docs/rest_summary.html index 2d61942..eb14b6e 100644 --- a/docs/rest_summary.html +++ b/docs/rest_summary.html @@ -11,6 +11,7 @@ src="scripts/sms_restriction_sites.js" > + diff --git a/docs/rev_comp.html b/docs/rev_comp.html index b703e07..32553d0 100644 --- a/docs/rev_comp.html +++ b/docs/rev_comp.html @@ -7,6 +7,7 @@ + diff --git a/docs/rev_trans.html b/docs/rev_trans.html index e77f6ef..3ecfb0c 100644 --- a/docs/rev_trans.html +++ b/docs/rev_trans.html @@ -7,6 +7,7 @@ + diff --git a/docs/sample_dna.html b/docs/sample_dna.html index 329b3d3..8da3e1d 100644 --- a/docs/sample_dna.html +++ b/docs/sample_dna.html @@ -7,6 +7,7 @@ + diff --git a/docs/sample_protein.html b/docs/sample_protein.html index 4c24f53..656dc77 100644 --- a/docs/sample_protein.html +++ b/docs/sample_protein.html @@ -7,6 +7,7 @@ + diff --git a/docs/search_patterns.html b/docs/search_patterns.html index 23be0ff..4754d36 100644 --- a/docs/search_patterns.html +++ b/docs/search_patterns.html @@ -5,6 +5,7 @@ Search patterns + diff --git a/docs/shuffle_dna.html b/docs/shuffle_dna.html index 55b8f24..3f70e9a 100644 --- a/docs/shuffle_dna.html +++ b/docs/shuffle_dna.html @@ -7,6 +7,7 @@ + diff --git a/docs/shuffle_protein.html b/docs/shuffle_protein.html index 4929f07..65f4232 100644 --- a/docs/shuffle_protein.html +++ b/docs/shuffle_protein.html @@ -7,6 +7,7 @@ + diff --git a/docs/split_codons.html b/docs/split_codons.html index 73f0b3c..b6b99ed 100644 --- a/docs/split_codons.html +++ b/docs/split_codons.html @@ -7,6 +7,7 @@ + diff --git a/docs/split_fasta.html b/docs/split_fasta.html index c33e0af..0a2fc00 100644 --- a/docs/split_fasta.html +++ b/docs/split_fasta.html @@ -7,6 +7,7 @@ + diff --git a/docs/three_to_one.html b/docs/three_to_one.html index 35cffea..4e57f97 100644 --- a/docs/three_to_one.html +++ b/docs/three_to_one.html @@ -7,6 +7,7 @@ + diff --git a/docs/trans_map.html b/docs/trans_map.html index 4ce0b71..d2a23b6 100644 --- a/docs/trans_map.html +++ b/docs/trans_map.html @@ -12,6 +12,7 @@ > + diff --git a/docs/translate.html b/docs/translate.html index 4df0d7d..76f72e5 100644 --- a/docs/translate.html +++ b/docs/translate.html @@ -8,6 +8,7 @@ + diff --git a/docs/window_extract_dna.html b/docs/window_extract_dna.html index 6f73641..4a1a4c4 100644 --- a/docs/window_extract_dna.html +++ b/docs/window_extract_dna.html @@ -8,6 +8,7 @@ + diff --git a/docs/window_extract_protein.html b/docs/window_extract_protein.html index 5d477c0..ab0a016 100644 --- a/docs/window_extract_protein.html +++ b/docs/window_extract_protein.html @@ -14,6 +14,7 @@ type="text/javascript" src="scripts/range_extract_protein.js" > + From e0eecd53baf0ccce05ad01e214c07b2929f743ba Mon Sep 17 00:00:00 2001 From: YaoYinYing <33014714+YaoYinYing@users.noreply.github.com> Date: Tue, 18 Mar 2025 01:56:49 +0800 Subject: [PATCH 3/3] save --- docs/about.html | 336 +------------------------------ docs/acknowledgments.html | 336 +------------------------------ docs/browser_compat.html | 336 +------------------------------ docs/codon_plot.html | 336 +------------------------------ docs/codon_usage.html | 336 +------------------------------ docs/color_align_cons.html | 336 +------------------------------ docs/color_align_prop.html | 336 +------------------------------ docs/combine_fasta.html | 336 +------------------------------ docs/cpg_islands.html | 336 +------------------------------ docs/dna_mw.html | 336 +------------------------------ docs/dna_pattern.html | 336 +------------------------------ docs/dna_stats.html | 336 +------------------------------ docs/embl_fasta.html | 336 +------------------------------ docs/embl_feat.html | 336 +------------------------------ docs/embl_trans.html | 336 +------------------------------ docs/filter_dna.html | 336 +------------------------------ docs/filter_protein.html | 336 +------------------------------ docs/fuzzy_search_dna.html | 336 +------------------------------ docs/fuzzy_search_protein.html | 336 +------------------------------ docs/genbank_fasta.html | 336 +------------------------------ docs/genbank_feat.html | 336 +------------------------------ docs/genbank_trans.html | 336 +------------------------------ docs/genetic_code.html | 336 +------------------------------ docs/gnu_license.html | 336 +------------------------------ docs/group_dna.html | 336 +------------------------------ docs/group_protein.html | 336 +------------------------------ docs/ident_sim.html | 336 +------------------------------ docs/index.html | 336 +------------------------------ docs/iupac.html | 336 +------------------------------ docs/mirror.html | 336 +------------------------------ docs/multi_rev_trans.html | 336 +------------------------------ docs/mutate_dna.html | 336 +------------------------------ docs/mutate_for_digest.html | 336 +------------------------------ docs/mutate_protein.html | 336 +------------------------------ docs/one_to_three.html | 336 +------------------------------ docs/orf_find.html | 336 +------------------------------ docs/pairwise_align_codons.html | 336 +------------------------------ docs/pairwise_align_dna.html | 336 +------------------------------ docs/pairwise_align_protein.html | 336 +------------------------------ docs/pcr_primer_stats.html | 336 +------------------------------ docs/pcr_products.html | 336 +------------------------------ docs/primer_map.html | 336 +------------------------------ docs/protein_gravy.html | 336 +------------------------------ docs/protein_iep.html | 336 +------------------------------ docs/protein_mw.html | 336 +------------------------------ docs/protein_pattern.html | 336 +------------------------------ docs/protein_stats.html | 336 +------------------------------ docs/random_coding_dna.html | 336 +------------------------------ docs/random_dna.html | 336 +------------------------------ docs/random_dna_regions.html | 336 +------------------------------ docs/random_protein.html | 336 +------------------------------ docs/random_protein_regions.html | 336 +------------------------------ docs/range_extract_dna.html | 336 +------------------------------ docs/range_extract_protein.html | 336 +------------------------------ docs/reference.html | 336 +------------------------------ docs/rest_digest.html | 336 +------------------------------ docs/rest_map.html | 336 +------------------------------ docs/rest_summary.html | 336 +------------------------------ docs/rev_comp.html | 336 +------------------------------ docs/rev_trans.html | 336 +------------------------------ docs/sample_dna.html | 336 +------------------------------ docs/sample_protein.html | 336 +------------------------------ docs/search_patterns.html | 336 +------------------------------ docs/shuffle_dna.html | 336 +------------------------------ docs/shuffle_protein.html | 336 +------------------------------ docs/split_codons.html | 336 +------------------------------ docs/split_fasta.html | 336 +------------------------------ docs/three_to_one.html | 336 +------------------------------ docs/trans_map.html | 336 +------------------------------ docs/translate.html | 336 +------------------------------ docs/window_extract_dna.html | 336 +------------------------------ docs/window_extract_protein.html | 336 +------------------------------ 72 files changed, 72 insertions(+), 24120 deletions(-) diff --git a/docs/about.html b/docs/about.html index 9ea956b..e1a22b3 100644 --- a/docs/about.html +++ b/docs/about.html @@ -14,341 +14,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/acknowledgments.html b/docs/acknowledgments.html index 2addba0..e3685ac 100644 --- a/docs/acknowledgments.html +++ b/docs/acknowledgments.html @@ -14,341 +14,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/browser_compat.html b/docs/browser_compat.html index 20397f6..2ca58bf 100644 --- a/docs/browser_compat.html +++ b/docs/browser_compat.html @@ -14,341 +14,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/codon_plot.html b/docs/codon_plot.html index 51c6de9..77dda5d 100644 --- a/docs/codon_plot.html +++ b/docs/codon_plot.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/codon_usage.html b/docs/codon_usage.html index a84afe8..340d62d 100644 --- a/docs/codon_usage.html +++ b/docs/codon_usage.html @@ -17,341 +17,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/color_align_cons.html b/docs/color_align_cons.html index dda73e1..decf5ae 100644 --- a/docs/color_align_cons.html +++ b/docs/color_align_cons.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/color_align_prop.html b/docs/color_align_prop.html index 8c75916..8b3a7de 100644 --- a/docs/color_align_prop.html +++ b/docs/color_align_prop.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/combine_fasta.html b/docs/combine_fasta.html index 75ce325..db1187d 100644 --- a/docs/combine_fasta.html +++ b/docs/combine_fasta.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/cpg_islands.html b/docs/cpg_islands.html index f92f04b..c03de30 100644 --- a/docs/cpg_islands.html +++ b/docs/cpg_islands.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/dna_mw.html b/docs/dna_mw.html index cc77c42..d713f16 100644 --- a/docs/dna_mw.html +++ b/docs/dna_mw.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/dna_pattern.html b/docs/dna_pattern.html index 61d2419..0da0091 100644 --- a/docs/dna_pattern.html +++ b/docs/dna_pattern.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/dna_stats.html b/docs/dna_stats.html index 45b2ee5..dfdac27 100644 --- a/docs/dna_stats.html +++ b/docs/dna_stats.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/embl_fasta.html b/docs/embl_fasta.html index 7c36655..04c73b4 100644 --- a/docs/embl_fasta.html +++ b/docs/embl_fasta.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/embl_feat.html b/docs/embl_feat.html index 457c91c..1c9cda3 100644 --- a/docs/embl_feat.html +++ b/docs/embl_feat.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/embl_trans.html b/docs/embl_trans.html index 587b180..ad6c3d4 100644 --- a/docs/embl_trans.html +++ b/docs/embl_trans.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/filter_dna.html b/docs/filter_dna.html index 14e5ed3..f225d96 100644 --- a/docs/filter_dna.html +++ b/docs/filter_dna.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/filter_protein.html b/docs/filter_protein.html index ee24880..d29b55d 100644 --- a/docs/filter_protein.html +++ b/docs/filter_protein.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/fuzzy_search_dna.html b/docs/fuzzy_search_dna.html index 9fe6b2a..26c2da6 100644 --- a/docs/fuzzy_search_dna.html +++ b/docs/fuzzy_search_dna.html @@ -17,341 +17,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/fuzzy_search_protein.html b/docs/fuzzy_search_protein.html index 345907a..f9619d5 100644 --- a/docs/fuzzy_search_protein.html +++ b/docs/fuzzy_search_protein.html @@ -20,341 +20,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/genbank_fasta.html b/docs/genbank_fasta.html index ca732dd..f650fc3 100644 --- a/docs/genbank_fasta.html +++ b/docs/genbank_fasta.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/genbank_feat.html b/docs/genbank_feat.html index c5b6e45..cf1ebfd 100644 --- a/docs/genbank_feat.html +++ b/docs/genbank_feat.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/genbank_trans.html b/docs/genbank_trans.html index 6467039..c298f57 100644 --- a/docs/genbank_trans.html +++ b/docs/genbank_trans.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/genetic_code.html b/docs/genetic_code.html index e26b960..9045824 100644 --- a/docs/genetic_code.html +++ b/docs/genetic_code.html @@ -14,341 +14,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/gnu_license.html b/docs/gnu_license.html index 0be44cb..ff8658b 100644 --- a/docs/gnu_license.html +++ b/docs/gnu_license.html @@ -14,341 +14,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/group_dna.html b/docs/group_dna.html index 687c6bd..b9754c3 100644 --- a/docs/group_dna.html +++ b/docs/group_dna.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/group_protein.html b/docs/group_protein.html index ea0b61e..39a822d 100644 --- a/docs/group_protein.html +++ b/docs/group_protein.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/ident_sim.html b/docs/ident_sim.html index 765c3c6..e0afa69 100644 --- a/docs/ident_sim.html +++ b/docs/ident_sim.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/index.html b/docs/index.html index a2a3e59..3343c18 100644 --- a/docs/index.html +++ b/docs/index.html @@ -14,341 +14,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/iupac.html b/docs/iupac.html index 555d838..b72e36f 100644 --- a/docs/iupac.html +++ b/docs/iupac.html @@ -14,341 +14,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/mirror.html b/docs/mirror.html index 4f21827..da64f2f 100644 --- a/docs/mirror.html +++ b/docs/mirror.html @@ -14,341 +14,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/multi_rev_trans.html b/docs/multi_rev_trans.html index 2ab8248..42742b1 100644 --- a/docs/multi_rev_trans.html +++ b/docs/multi_rev_trans.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/mutate_dna.html b/docs/mutate_dna.html index 6c3b26d..ed12631 100644 --- a/docs/mutate_dna.html +++ b/docs/mutate_dna.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/mutate_for_digest.html b/docs/mutate_for_digest.html index eb4a3ff..aa675f0 100644 --- a/docs/mutate_for_digest.html +++ b/docs/mutate_for_digest.html @@ -17,341 +17,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/mutate_protein.html b/docs/mutate_protein.html index f7a85d4..51c976a 100644 --- a/docs/mutate_protein.html +++ b/docs/mutate_protein.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/one_to_three.html b/docs/one_to_three.html index bbb570a..bcf84e2 100644 --- a/docs/one_to_three.html +++ b/docs/one_to_three.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/orf_find.html b/docs/orf_find.html index 5b8fe80..aa909b2 100644 --- a/docs/orf_find.html +++ b/docs/orf_find.html @@ -17,341 +17,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/pairwise_align_codons.html b/docs/pairwise_align_codons.html index 1a42554..b93dd16 100644 --- a/docs/pairwise_align_codons.html +++ b/docs/pairwise_align_codons.html @@ -27,341 +27,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/pairwise_align_dna.html b/docs/pairwise_align_dna.html index 60ff0cb..1e181b1 100644 --- a/docs/pairwise_align_dna.html +++ b/docs/pairwise_align_dna.html @@ -18,341 +18,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/pairwise_align_protein.html b/docs/pairwise_align_protein.html index 1181560..2106eb1 100644 --- a/docs/pairwise_align_protein.html +++ b/docs/pairwise_align_protein.html @@ -21,341 +21,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/pcr_primer_stats.html b/docs/pcr_primer_stats.html index 0c34392..d71fd4a 100644 --- a/docs/pcr_primer_stats.html +++ b/docs/pcr_primer_stats.html @@ -17,341 +17,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/pcr_products.html b/docs/pcr_products.html index 9b84ade..20e29f3 100644 --- a/docs/pcr_products.html +++ b/docs/pcr_products.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/primer_map.html b/docs/primer_map.html index 9d83a7a..87636de 100644 --- a/docs/primer_map.html +++ b/docs/primer_map.html @@ -21,341 +21,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/protein_gravy.html b/docs/protein_gravy.html index b259645..4e26333 100644 --- a/docs/protein_gravy.html +++ b/docs/protein_gravy.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/protein_iep.html b/docs/protein_iep.html index 8369cb3..bb29424 100644 --- a/docs/protein_iep.html +++ b/docs/protein_iep.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/protein_mw.html b/docs/protein_mw.html index 2f64b0a..aebff7d 100644 --- a/docs/protein_mw.html +++ b/docs/protein_mw.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/protein_pattern.html b/docs/protein_pattern.html index 2a4f625..ac41be2 100644 --- a/docs/protein_pattern.html +++ b/docs/protein_pattern.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/protein_stats.html b/docs/protein_stats.html index 589b25a..33feaa9 100644 --- a/docs/protein_stats.html +++ b/docs/protein_stats.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/random_coding_dna.html b/docs/random_coding_dna.html index e3ed539..abe8c29 100644 --- a/docs/random_coding_dna.html +++ b/docs/random_coding_dna.html @@ -17,341 +17,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/random_dna.html b/docs/random_dna.html index 13e460b..8029ff7 100644 --- a/docs/random_dna.html +++ b/docs/random_dna.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/random_dna_regions.html b/docs/random_dna_regions.html index 4cc77eb..c96fead 100644 --- a/docs/random_dna_regions.html +++ b/docs/random_dna_regions.html @@ -17,341 +17,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/random_protein.html b/docs/random_protein.html index d7a672c..e8f193f 100644 --- a/docs/random_protein.html +++ b/docs/random_protein.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/random_protein_regions.html b/docs/random_protein_regions.html index 6f9a628..f16246e 100644 --- a/docs/random_protein_regions.html +++ b/docs/random_protein_regions.html @@ -23,341 +23,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/range_extract_dna.html b/docs/range_extract_dna.html index e65b2c9..23120b7 100644 --- a/docs/range_extract_dna.html +++ b/docs/range_extract_dna.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/range_extract_protein.html b/docs/range_extract_protein.html index 7471ac5..49214c7 100644 --- a/docs/range_extract_protein.html +++ b/docs/range_extract_protein.html @@ -19,341 +19,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/reference.html b/docs/reference.html index 8e46955..04fb79b 100644 --- a/docs/reference.html +++ b/docs/reference.html @@ -14,341 +14,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/rest_digest.html b/docs/rest_digest.html index 82c744e..320c764 100644 --- a/docs/rest_digest.html +++ b/docs/rest_digest.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/rest_map.html b/docs/rest_map.html index b2553e9..55aa708 100644 --- a/docs/rest_map.html +++ b/docs/rest_map.html @@ -21,341 +21,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/rest_summary.html b/docs/rest_summary.html index eb14b6e..50622f8 100644 --- a/docs/rest_summary.html +++ b/docs/rest_summary.html @@ -20,341 +20,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/rev_comp.html b/docs/rev_comp.html index 32553d0..085f074 100644 --- a/docs/rev_comp.html +++ b/docs/rev_comp.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/rev_trans.html b/docs/rev_trans.html index 3ecfb0c..07b6c22 100644 --- a/docs/rev_trans.html +++ b/docs/rev_trans.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/sample_dna.html b/docs/sample_dna.html index 8da3e1d..8cfd31d 100644 --- a/docs/sample_dna.html +++ b/docs/sample_dna.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/sample_protein.html b/docs/sample_protein.html index 656dc77..ed4dff3 100644 --- a/docs/sample_protein.html +++ b/docs/sample_protein.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/search_patterns.html b/docs/search_patterns.html index 4754d36..c2b4857 100644 --- a/docs/search_patterns.html +++ b/docs/search_patterns.html @@ -14,341 +14,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/shuffle_dna.html b/docs/shuffle_dna.html index 3f70e9a..f3430ab 100644 --- a/docs/shuffle_dna.html +++ b/docs/shuffle_dna.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/shuffle_protein.html b/docs/shuffle_protein.html index 65f4232..877493b 100644 --- a/docs/shuffle_protein.html +++ b/docs/shuffle_protein.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/split_codons.html b/docs/split_codons.html index b6b99ed..7498431 100644 --- a/docs/split_codons.html +++ b/docs/split_codons.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/split_fasta.html b/docs/split_fasta.html index 0a2fc00..65a85da 100644 --- a/docs/split_fasta.html +++ b/docs/split_fasta.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/three_to_one.html b/docs/three_to_one.html index 4e57f97..eeddd83 100644 --- a/docs/three_to_one.html +++ b/docs/three_to_one.html @@ -16,341 +16,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/trans_map.html b/docs/trans_map.html index d2a23b6..f4a03e4 100644 --- a/docs/trans_map.html +++ b/docs/trans_map.html @@ -21,341 +21,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/translate.html b/docs/translate.html index 76f72e5..dbc7fd5 100644 --- a/docs/translate.html +++ b/docs/translate.html @@ -17,341 +17,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/window_extract_dna.html b/docs/window_extract_dna.html index 4a1a4c4..626b29d 100644 --- a/docs/window_extract_dna.html +++ b/docs/window_extract_dna.html @@ -17,341 +17,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
- 		diff --git a/docs/window_extract_protein.html b/docs/window_extract_protein.html index ab0a016..05e3815 100644 --- a/docs/window_extract_protein.html +++ b/docs/window_extract_protein.html @@ -23,341 +23,7 @@ - +
- - -
- Format Conversion -
- -
- -Combine FASTA
- -EMBL to FASTA
- -EMBL Feature Extractor
- -EMBL Trans Extractor
- -Filter DNA
- -Filter Protein
- -GenBank to FASTA
- -GenBank Feature Extractor
- -GenBank Trans Extractor
- -One to Three
- -Range Extractor DNA
- -Range Extractor Protein
- -Reverse Complement
- -Split Codons
- -Split FASTA
- -Three to One
- -Window Extractor DNA
- -Window Extractor Protein -
- -
- Sequence Analysis -
- -
- -Codon Plot
- -Codon Usage
- -CpG Islands
- -DNA Molecular Weight
- -DNA Pattern Find
- -DNA Stats
- -Fuzzy Search DNA
- -Fuzzy Search Protein
- -Ident and Sim
- -Multi Rev Trans
- -Mutate for Digest
- -ORF Finder
- -Pairwise Align Codons
- -Pairwise Align DNA
- -Pairwise Align Protein
- -PCR Primer Stats
- -PCR Products
- -Protein GRAVY
- -Protein Isoelectric Point
- -Protein Molecular Weight
- -Protein Pattern Find
- -Protein Stats
- -Restriction Digest
- -Restriction Summary
- -Reverse Translate
- -Translate -
- -
- Sequence Figures -
- -
- -Color Align Conservation
- -Color Align Properties
- -Group DNA
- -Group Protein
- -Primer Map
- -Restriction Map
- -Translation Map -
- -
- Random Sequences -
- -
- -Mutate DNA
- -Mutate Protein
- -Random Coding DNA
- -Random DNA Sequence
- -Random DNA Regions
- -Random Protein Sequence
- -Random Protein Regions
- -Sample DNA
- -Sample Protein
- -Shuffle DNA
- -Shuffle Protein -
- -
- Miscellaneous -
- -
- -Home
- -IUPAC codes
- -Genetic codes
- -Browser compatibility
- -Mirror this site
- -Use this site off-line
- -About this site
- -Acknowledgments
- -Reference -
- - -
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul - Stothard. Send questions and comments to stothard@ualberta.ca -
- -
-
- home -
-
-