v4.9.3 release candidate (#1901)

* prep for release

* Disable thematic tests (only temporarily for release)

* Resolve URL redirects

* More URL redirects

* relax the tolerance on new unit test

Author: cpsievert

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: plotly
 Title: Create Interactive Web Graphics via 'plotly.js'
-Version: 4.9.2.9000
+Version: 4.9.3
 Authors@R: c(person("Carson", "Sievert", role = c("aut", "cre"),
     email = "cpsievert1@gmail.com", comment = c(ORCID = "0000-0002-4958-2844")),
     person("Chris", "Parmer", role = "aut",
@@ -20,7 +20,7 @@ Authors@R: c(person("Carson", "Sievert", role = c("aut", "cre"),
     person("Plotly Technologies Inc.", role = "cph"))
 License: MIT + file LICENSE
 Description: Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.
-URL: https://plotly-r.com, https://github.com/ropensci/plotly#readme, https://plot.ly/r
+URL: https://plotly-r.com, https://github.com/ropensci/plotly#readme, https://plotly.com/r/
 BugReports: https://github.com/ropensci/plotly/issues
 Depends:
     R (>= 3.2.0),
@@ -74,12 +74,8 @@ Suggests:
     processx,
     plotlyGeoAssets,
     forcats,
-    thematic,
     palmerpenguins
 LazyData: true
 RoxygenNote: 7.1.1
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-Remotes: 
-  rstudio/thematic,
-  ramnathv/htmlwidgets

NEWS.md

@@ -1,4 +1,4 @@
-# 4.9.2.9000
+# 4.9.3
 
 ## Changes to plotly.js
 
@@ -8,7 +8,7 @@
 
 * `renderPlotly()` now works well with `shiny::bindCache()`, meaning that plotly graphs can now be persistently cached in Shiny apps with `renderPlotly(expr) %>% shiny::bindCache()` (#1879).
 
-* `ggplotly()` now works well with the [**thematic** package](https://rstudio.github.io/thematic). That is, it can now correctly translate **ggplot2** styling that derives from **thematic**. Note that, in order to use **thematic**'s auto theming in Shiny with `ggplotly()`, you need **shiny** v1.5.0 (or higher) and **htmlwidgets** v1.5.2.9000 (or higher). Relatedly, if these versions are available, one may now also call `getCurrentOutputInfo()` inside `renderPlotly()` to get CSS styles of the output container (#1801 and #1802).
+* `ggplotly()` now works well with the [**thematic** package](https://rstudio.github.io/thematic/). That is, it can now correctly translate **ggplot2** styling that derives from **thematic**. Note that, in order to use **thematic**'s auto theming in Shiny with `ggplotly()`, you need **shiny** v1.5.0 (or higher) and **htmlwidgets** v1.5.2.9000 (or higher). Relatedly, if these versions are available, one may now also call `getCurrentOutputInfo()` inside `renderPlotly()` to get CSS styles of the output container (#1801 and #1802).
 
 ## IMPROVEMENTS
 
@@ -166,7 +166,7 @@ This is minor patch release with a few minor bug fixes and updates test expectat
 * The `name` attribute is now a "special `plot_ly()` argument" and behaves similar to `split` (it ensures a different trace for every unique value supplied). Although this leads to a breaking change (`name` was previously appended to an automatically generated trace name), it leads to a more flexible and transparent API. Those that wish to have the old behavior back should provide relevant mappings to the `name` attributes (e.g. `plot_ly(mtcars, x = ~wt, y = ~mpg, color = ~factor(vs), name = "a")` should become `plot_ly(mtcars, x = ~wt, y = ~mpg, color = ~factor(vs), name = ~paste(vs, "\na"))`)
 * The `color` argument now maps to `fillcolor`, making it much easier to use polygon fills to encode data values (e.g., choropleth maps). For backwards-compatibilty reasons, when `color` maps to `fillcolor`, `alpha` defaults to 0.5 (instead of 1). For an example, `plot_mapbox(mn_res, color = ~INDRESNAME)` or `plot_mapbox(mn_res, split = ~INDRESNAME, color = ~AREA, showlegend = FALSE, stroke = I("black"))`.
 * The `color` argument no longer automatically add `"markers"` to the `mode` attribute for scatter/scattergl trace types. Those who wish to have the old behavior back, should add `"markers"` to the `mode` explicity (e.g., change `plot_ly(economics, x = ~pce, y = ~pop, color = ~as.numeric(date), mode = "lines")` to `plot_ly(economics, x = ~pce, y = ~pop, color = ~as.numeric(date), mode = "lines+markers")`).
-* The `size` argument now informs a default [error_[x/y].width](https://plot.ly/r/reference/#scatter-error_x-width) (and `span` informs [error_[x/y].thickness](https://plot.ly/r/reference/#scatter-error_x-thickness)). Note you can override the default by specifying directly (e.g. `plot_ly(x = 1:10, y = 1:10, size = I(10), error_x = list(value = 5, width = 0))`).
+* The `size` argument now informs a default [error_[x/y].width](https://plotly.com/r/reference/#scatter-error_x-width) (and `span` informs [error_[x/y].thickness](https://plotly.com/r/reference/#scatter-error_x-thickness)). Note you can override the default by specifying directly (e.g. `plot_ly(x = 1:10, y = 1:10, size = I(10), error_x = list(value = 5, width = 0))`).
 * `layout.showlegend` now defaults to `TRUE` for a *single* pie trace. This is a more sensible default and matches pure plotly.js behavior.
 
 ### Other changes relevant for all **plotly** objects
@@ -253,12 +253,12 @@ This is minor patch release with a few minor bug fixes and updates test expectat
 * Added a `frame` argument to `plot_ly()` for creating animations. Also added the `animation_opts()`, `animation_slider()`, and `animation_button()` functions for configuring animation defaults.
 * Added a new interface to [v2 of the REST API](https://api.plot.ly/v2). This new interface makes the  `plotly_POST()` and `get_figure()` functions obsolete (use `api_create()` and `api_download_plot()` instead), and thus, are now deprecated, but remain around for backwards-compatibility. For more details, see `help(api)`.
 * Added support for conversion of more **ggplot2** geoms via `ggplotly()`: `GeomCol`, `GeomRug`, `GeomCrossbar`, `GeomQuantile`, `GeomSpoke`, `GeomDotplot`, `GeomRasterAnn` (i.e., `annotation_raster()`), and `GeomAnnotationMap` (i.e., `annotation_map()`).
-* Added a new function `raster2uri()` which makes it easier to embed raster objects as [images](https://plot.ly/r/reference/#layout-images) via data URIs. For examples, see `help(raster2uri)`.
+* Added a new function `raster2uri()` which makes it easier to embed raster objects as [images](https://plotly.com/r/reference/#layout-images) via data URIs. For examples, see `help(raster2uri)`.
 * `ggplotly()` gains a new argument, `dynamicTicks`, which allows axis ticks to update upon zoom/pan interactions (fixes #485).
 * Sensible sizing and positioning defaults are now provided for subplots multiple colorbars.
 * R linebreaks are translated to HTML linebreaks (i.e., '\n' translates to '<br />') (fixes #851).
 * Added a `plot_dendro()` function for a quick and dirty interactive dendrogram with support for hierarchial selection. For more, see -- <https://plotly-r.com/client-side-linking.html#fig:dendro>
-* The `export()` function gains a `selenium` argument for rendering/exporting WebGL plots and exporting to 'svg'/'webp' file formats (via the plotly.js function [Plotly.downloadImage()](https://plot.ly/javascript/plotlyjs-function-reference/#plotlydownloadimage)).
+* The `export()` function gains a `selenium` argument for rendering/exporting WebGL plots and exporting to 'svg'/'webp' file formats (via the plotly.js function [Plotly.downloadImage()](https://plotly.com/javascript/plotlyjs-function-reference/#plotlydownloadimage)).
 * Better type checking of trace attributes will now automatically reduce a single-valued vector to a constant (when appropriate). This is particularly useful for anchoring multiple traces to a single legend entry via `legendgroup` (see #675, #817, #826).
 * The `plotlyOutput()` function gains a `inline` argument which makes it easier to place multiple plots in the same row (in a shiny application).
 
@@ -359,7 +359,7 @@ limits.
 ## CHANGES
 
 * The `add_scattergeo()` and `add_choropleth()` functions have been deprecated in favor of `plot_geo()`. 
-* The `add_area(...)` function changed it's meaning from `add_lines(..., fill = 'tozeroy')` to a wrapper around the area trace <https://plot.ly/r/reference/#area>. This is more consistent with the naming conventions already in place for other `add_()` functions.
+* The `add_area(...)` function changed it's meaning from `add_lines(..., fill = 'tozeroy')` to a wrapper around the area trace <https://plotly.com/r/reference/#area>. This is more consistent with the naming conventions already in place for other `add_()` functions.
 * `add_ribbons()` now shows points (instead of fill) on hover.
 
 # 4.4.5 -- 19 September 2016

R/add.R

@@ -35,9 +35,9 @@ add_data <- function(p, data = NULL) {
 #' @seealso [plot_ly()]
 #' @references \url{https://plotly-r.com/overview.html}
 #' 
-#' \url{https://plot.ly/r}
+#' \url{https://plotly.com/r/}
 #' 
-#' \url{https://plot.ly/r/reference/} 
+#' \url{https://plotly.com/r/reference/} 
 #' @author Carson Sievert
 #' @export
 #' @rdname add_trace

R/deprecated.R

@@ -48,7 +48,7 @@ get_figure <- function(username, id) {
 #' 
 #' @description This function is now deprecated. It used to provide a way to store plotly 
 #' account credentials, but that can now be done with environment variables. 
-#' For more details and examples, see \url{https://plot.ly/r/getting-started/}.
+#' For more details and examples, see \url{https://plotly.com/r/getting-started/}.
 #' 
 #' If you're here looking for an intro/overview of the package, see the 
 #' \href{https://github.com/ropensci/plotly/#getting-started}{readme}

R/ggplotly.R

@@ -32,7 +32,7 @@
 #' @param ... arguments passed onto methods.
 #' @export
 #' @author Carson Sievert
-#' @references \url{https://plot.ly/ggplot2}
+#' @references \url{https://plotly.com/ggplot2/}
 #' @seealso [plot_ly()]
 #' @examples \dontrun{
 #' # simple example
@@ -431,8 +431,8 @@ gg2list <- function(p, width = NULL, height = NULL,
 
   # Allow thematic to add new defaults to the plot object based on it's theme
   built <- if (isNamespaceLoaded("thematic")) {
-    ggthematic_build <- getFromNamespace("ggthematic_build", "thematic")
-    ggthematic_build(p, ggplotly_build, thematic::thematic_get_theme(resolve = TRUE))
+    tns <- asNamespace("thematic")
+    tns$ggthematic_build(p, ggplotly_build, tns$thematic_get_theme(resolve = TRUE))
   } else {
     ggplotly_build(p)
   }
@@ -1277,7 +1277,7 @@ font_family <- function(family = "") {
   if (!isNamespaceLoaded("thematic")) {
     return("")
   }
-  font <- thematic::thematic_get_option("font")
+  font <- asNamespace("thematic")$thematic_get_option("font", resolve = TRUE)
   if (!length(font)) {
     return("")
   }

R/group2NA.R

@@ -7,7 +7,7 @@
 #' (i.e., color, fill, etc), it is more efficient to draw them as a single trace 
 #' with missing values that separate the groups (instead of multiple traces), 
 #' In this case, one should also take care to make sure 
-#' \href{https://plot.ly/r/reference/#scatter-connectgaps}{connectgaps} 
+#' \href{https://plotly.com/r/reference/#scatter-connectgaps}{connectgaps} 
 #' is set to `FALSE`.
 #' 
 #' @param data a data frame.
@@ -72,7 +72,7 @@ group2NA <- function(data, groupNames = "group", nested = NULL, ordered = NULL,
   data.table::setorderv(dt, cols = c(nested, groupNames, ordered))
 
   # when connectgaps=FALSE, inserting NAs ensures each "group" 
-  # will be visually distinct https://plot.ly/r/reference/#scatter-connectgaps
+  # will be visually distinct https://plotly.com/r/reference/#scatter-connectgaps
   # also, retracing is useful for creating polygon(s) via scatter trace(s)
   keyVars <- c(nested, groupNames)
   keyNum <- length(keyVars) + 1

R/helpers.R

@@ -2,7 +2,7 @@
 #' 
 #' @param p a plotly object
 #' @param ... arguments are documented here 
-#' \url{https://plot.ly/r/reference/#scatter-marker-colorbar}.
+#' \url{https://plotly.com/r/reference/#scatter-marker-colorbar}.
 #' @param limits numeric vector of length 2. Set the extent of the colorbar scale.
 #' @param which colorbar to modify? Should only be relevant for subplots with 
 #' multiple colorbars.
@@ -13,7 +13,7 @@
 #' p <- plot_ly(mtcars, x = ~wt, y = ~mpg, color = ~cyl)
 #' 
 #' # pass any colorbar attribute -- 
-#' # https://plot.ly/r/reference/#scatter-marker-colorbar
+#' # https://plotly.com/r/reference/#scatter-marker-colorbar
 #' colorbar(p, len = 0.5)
 #' 
 #' # Expand the limits of the colorbar
@@ -188,7 +188,7 @@ plotly_empty <- function(...) {
 #' Encode a raster object as a data URI
 #' 
 #' Encode a raster object as a data URI, which is suitable for 
-#' use with `layout()` \href{https://plot.ly/r/reference/#layout-images}{images}.
+#' use with `layout()` \href{https://plotly.com/r/reference/#layout-images}{images}.
 #' This is especially convenient for embedding raster images on a plot in 
 #' a self-contained fashion (i.e., so they don't depend on external URL links).
 #' 

R/layout.R

@@ -2,7 +2,7 @@
 #' 
 #' @param p A plotly object.
 #' @param ... Arguments to the layout object. For documentation,
-#' see \url{https://plot.ly/r/reference/#Layout_and_layout_style_objects}
+#' see \url{https://plotly.com/r/reference/#Layout_and_layout_style_objects}
 #' @param data A data frame to associate with this layout (optional). If not 
 #' provided, arguments are evaluated using the data frame in [plot_ly()].
 #' @author Carson Sievert
@@ -49,7 +49,7 @@ layout.plotly <- function(p, ..., data = NULL) {
 #' @param start a start date/value.
 #' @param end an end date/value.
 #' @param ... these arguments are documented here 
-#' \url{https://plot.ly/r/reference/#layout-xaxis-rangeslider}
+#' \url{https://plotly.com/r/reference/#layout-xaxis-rangeslider}
 #' @export
 #' @author Carson Sievert
 #' @examples 
@@ -109,7 +109,7 @@ rangeslider <- function(p, start = NULL, end = NULL, ...) {
 #' config(plot_ly(), displaylogo = FALSE, collaborate = FALSE)
 #' 
 #' # enable mathjax
-#' # see more examples at https://plot.ly/r/LaTeX/
+#' # see more examples at https://plotly.com/r/LaTeX/
 #' plot_ly(x = c(1, 2, 3, 4), y = c(1, 4, 9, 16)) %>%
 #'   layout(title = TeX("\\text{Some mathjax: }\\alpha+\\beta x")) %>%
 #'   config(mathjax = "cdn")