Merge branch 'main' into feat-add-copy-ttree

Author: jpivarski

.all-contributorsrc

@@ -533,6 +533,33 @@
       "contributions": [
         "test"
       ]
+    },
+    {
+      "login": "YSelfTool",
+      "name": "Robin Sonnabend",
+      "avatar_url": "https://avatars.githubusercontent.com/u/1640386?v=4",
+      "profile": "http://tooldev.de",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "bojohnson5",
+      "name": "Bo Johnson",
+      "avatar_url": "https://avatars.githubusercontent.com/u/20647190?v=4",
+      "profile": "https://github.com/bojohnson5",
+      "contributions": [
+        "code"
+      ]
+    },
+    {
+      "login": "milesgranger",
+      "name": "Miles",
+      "avatar_url": "https://avatars.githubusercontent.com/u/13764397?v=4",
+      "profile": "https://github.com/milesgranger",
+      "contributions": [
+        "code"
+      ]
     }
   ],
   "contributorsPerLine": 7,

.github/dependabot.yml

@@ -5,3 +5,7 @@ updates:
     directory: /
     schedule:
       interval: weekly
+    groups:
+      actions:
+        patterns:
+          - '*'

.github/workflows/build-distributions.yml

@@ -0,0 +1,32 @@
+name: Build sdist and wheel
+
+on:
+  # Run on demand with workflow dispatch
+  workflow_dispatch:
+  # Use from other workflows
+  workflow_call:
+
+jobs:
+  dist:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Build sdist and wheel
+        run: pipx run build
+
+      - name: Check metadata
+        run: pipx run twine check --strict dist/*
+
+      - name: List contents of sdist
+        run: python -m tarfile --list dist/uproot-*.tar.gz
+
+      - name: List contents of wheel
+        run: python -m zipfile --list dist/uproot-*.whl
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: distribution-artifact
+          path: dist/*

.github/workflows/deploy.yml

@@ -6,34 +6,31 @@ on:
     types:
       - published
 
-jobs:
-  dist:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Build wheel and SDist
-        run: pipx run build
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 
-      - name: Check metadata
-        run: pipx run twine check dist/*
-
-      - uses: actions/upload-artifact@v4
-        with:
-          path: dist/*
+jobs:
 
+  build_dist:
+    name: Build and upload sdist and wheel
+    if: github.repository_owner == 'scikit-hep'
+    uses: ./.github/workflows/build-distributions.yml
 
   publish:
-    needs: [dist]
+    needs: [build_dist]
     runs-on: ubuntu-latest
     if: github.event_name == 'release' && github.event.action == 'published'
 
     steps:
       - uses: actions/download-artifact@v4
         with:
-          name: artifact
+          name: distribution-artifact
           path: dist
 
+      - name: List distributions to be deployed
+        run: ls -lha dist/
+
       - uses: pypa/gh-action-pypi-publish@release/v1
         with:
           password: ${{ secrets.pypi_password }}

.github/workflows/upload-nightly-wheels.yml

@@ -0,0 +1,39 @@
+name: Upload nightly wheels to Anaconda Cloud
+
+on:
+  # Run daily at 1:23 UTC
+  schedule:
+    - cron: 23 1 * * *
+  # Run on demand with workflow dispatch
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+
+  build_wheel:
+    name: Build and upload wheel
+    if: github.repository_owner == 'scikit-hep'
+    uses: ./.github/workflows/build-distributions.yml
+
+  upload_nightly_wheels:
+    name: Upload nightly wheels to Anaconda Cloud
+    needs: [build_wheel]
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          name: distribution-artifact
+          path: dist
+
+      - name: List wheel to be deployed
+        run: ls -lha dist/*.whl
+
+      - name: Upload wheel to Anaconda Cloud as nightly
+        uses: scientific-python/upload-nightly-action@b67d7fcc0396e1128a474d1ab2b48aa94680f9fc # 0.5.0
+        with:
+          artifacts_path: dist
+          anaconda_nightly_upload_token: ${{ secrets.ANACONDA_ORG_UPLOAD_TOKEN }}

.pre-commit-config.yaml

@@ -18,19 +18,19 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 24.1.1
+    rev: 24.2.0
     hooks:
       - id: black
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.14
+    rev: v0.2.2
     hooks:
       - id: ruff
         args: [--fix, --show-fixes]
 
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.15.0
+    rev: v3.15.1
     hooks:
       - id: pyupgrade
         args: [--py38-plus]

README.md

@@ -183,6 +183,9 @@ Thanks especially to the gracious help of Uproot contributors (including the [or
     </tr>
     <tr>
       <td align="center" valign="top" width="14.28%"><a href="https://github.com/bnavigator"><img src="https://avatars.githubusercontent.com/u/4623504?v=4?s=100" width="100px;" alt="Ben Greiner"/><br /><sub><b>Ben Greiner</b></sub></a><br /><a href="https://github.com/scikit-hep/uproot5/commits?author=bnavigator" title="Tests">⚠️</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="http://tooldev.de"><img src="https://avatars.githubusercontent.com/u/1640386?v=4?s=100" width="100px;" alt="Robin Sonnabend"/><br /><sub><b>Robin Sonnabend</b></sub></a><br /><a href="https://github.com/scikit-hep/uproot5/commits?author=YSelfTool" title="Code">💻</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/bojohnson5"><img src="https://avatars.githubusercontent.com/u/20647190?v=4?s=100" width="100px;" alt="Bo Johnson"/><br /><sub><b>Bo Johnson</b></sub></a><br /><a href="https://github.com/scikit-hep/uproot5/commits?author=bojohnson5" title="Code">💻</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="https://github.com/milesgranger"><img src="https://avatars.githubusercontent.com/u/13764397?v=4?s=100" width="100px;" alt="Miles"/><br /><sub><b>Miles</b></sub></a><br /><a href="https://github.com/scikit-hep/uproot5/commits?author=milesgranger" title="Code">💻</a></td>
     </tr>
   </tbody>
 </table>

docs-sphinx/prepare_docstrings.py

@@ -107,7 +107,7 @@ def ensure(filename, content):
 
 def handle_module(modulename, module):
     if any(x.startswith("_") for x in modulename.split(".")) and not any(
-        x == "_dask" for x in modulename.split(".")
+        x == "_dask" or x == "_dask_write" for x in modulename.split(".")
     ):
         return
 
@@ -125,7 +125,8 @@ def handle_module(modulename, module):
         toctree2.write("    " + modulename + " (module) <" + modulename + ">\n")
 
     if modulename != "uproot" and all(
-        not x.startswith("_") or x == "_dask" for x in modulename.split(".")
+        not x.startswith("_") or x == "_dask" or x == "_dask_write"
+        for x in modulename.split(".")
     ):
 
         def good(obj):

pyproject.toml

@@ -5,6 +5,9 @@ requires = [
   "hatch-vcs"
 ]
 
+[lint.mccabe]
+max-complexity = 100
+
 [project]
 authors = [
   {name = "Jim Pivarski", email = "pivarski@princeton.edu"}
@@ -35,7 +38,7 @@ classifiers = [
 ]
 dependencies = [
   "awkward>=2.4.6",
-  "importlib-metadata;python_version<\"3.8\"",
+  "cramjam>=2.5.0",
   "numpy",
   "fsspec",
   "packaging",
@@ -59,10 +62,12 @@ dev = [
   "pandas",
   "awkward-pandas"
 ]
+http = ["aiohttp"]
+s3 = ["s3fs"]
 test = [
-  "lz4",
+  "isal",
+  "deflate",
   "xxhash",
-  "zstandard",
   "minio",
   "aiohttp",
   "fsspec-xrootd",
@@ -75,6 +80,7 @@ test = [
   "scikit-hep-testdata",
   "rangehttpserver"
 ]
+xrootd = ["fsspec-xrootd"]
 
 [project.urls]
 Download = "https://github.com/scikit-hep/uproot5/releases"
@@ -114,6 +120,9 @@ exclude = [
   "src/uproot/__init__.py",
   "docs-sphinx/*.py"
 ]
+src = ["src"]
+
+[tool.ruff.lint]
 ignore = [
   "E501",
   "E722",
@@ -122,7 +131,7 @@ ignore = [
   "SIM118",  # key in dict, broken since uproot doesn't behave like a dict
   "PGH003",  # too-broad type ignore
   "SIM114",  # combine `if` branches using logical `or` operator
-  "PGH001",  # no eval allowed
+  "S307",  # no eval allowed
   "PLC1901",  # empty string is falsey (but I don't want to rely on such weak typing)
   "RUF012"  # enforces type annotations on a codebase that lacks type annotations
 ]
@@ -146,16 +155,10 @@ select = [
   "UP",  # pyupgrade
   "YTT"  # flake8-2020
 ]
-src = ["src"]
-
-[tool.ruff.lint]
 isort.required-imports = ["from __future__ import annotations"]
 
-[tool.ruff.mccabe]
-max-complexity = 100
-
-[tool.ruff.per-file-ignores]
-"dev/*" = ["T20"]
+[tool.ruff.lint.per-file-ignores]
+"dev/*" = ["T20", "T201"]
 "src/uproot/*/file.py" = ["SIM115"]
 
 [tool.setuptools_scm]