diff --git a/DESCRIPTION b/DESCRIPTION index be9f013c4a..8fea45e696 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -40,6 +40,7 @@ Imports: isoband, lifecycle (> 1.0.1), rlang (>= 1.1.0), + S7, scales (>= 1.4.0), stats, vctrs (>= 0.6.0), @@ -95,6 +96,7 @@ Collate: 'compat-plyr.R' 'utilities.R' 'aes.R' + 'all-classes.R' 'annotation-borders.R' 'utilities-checks.R' 'legend-draw.R' @@ -181,6 +183,8 @@ Collate: 'grob-dotstack.R' 'grob-null.R' 'grouping.R' + 'properties.R' + 'margins.R' 'theme-elements.R' 'guide-.R' 'guide-axis.R' @@ -204,7 +208,6 @@ Collate: 'layer-sf.R' 'layout.R' 'limits.R' - 'margins.R' 'performance.R' 'plot-build.R' 'plot-construction.R' diff --git a/NAMESPACE b/NAMESPACE index 2289af8fbe..6af3a6ea80 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -1,31 +1,35 @@ # Generated by roxygen2: do not edit by hand +S3method("$","ggplot2::element") +S3method("$","ggplot2::gg") +S3method("$","ggplot2::theme") S3method("$",ggproto) S3method("$",ggproto_parent) -S3method("$",theme) -S3method("$<-",uneval) -S3method("+",gg) +S3method("$<-","ggplot2::element") +S3method("$<-","ggplot2::gg") +S3method("$<-","ggplot2::mapping") +S3method("[","ggplot2::element") +S3method("[","ggplot2::gg") +S3method("[","ggplot2::mapping") S3method("[",mapped_discrete) -S3method("[",uneval) +S3method("[<-","ggplot2::element") +S3method("[<-","ggplot2::gg") +S3method("[<-","ggplot2::mapping") S3method("[<-",mapped_discrete) -S3method("[<-",uneval) +S3method("[[","ggplot2::element") +S3method("[[","ggplot2::gg") S3method("[[",ggproto) -S3method("[[<-",uneval) +S3method("[[<-","ggplot2::element") +S3method("[[<-","ggplot2::gg") +S3method("[[<-","ggplot2::mapping") S3method(.DollarNames,ggproto) S3method(as.data.frame,mapped_discrete) -S3method(as.gtable,ggplot) -S3method(as.gtable,ggplot_built) S3method(as.list,ggproto) S3method(autolayer,default) S3method(autoplot,default) S3method(c,mapped_discrete) S3method(drawDetails,zeroGrob) -S3method(element_grob,element_blank) -S3method(element_grob,element_line) -S3method(element_grob,element_point) -S3method(element_grob,element_polygon) -S3method(element_grob,element_rect) -S3method(element_grob,element_text) +S3method(element_grob,default) S3method(format,ggproto) S3method(format,ggproto_method) S3method(format,rd_section_aesthetics) @@ -52,30 +56,10 @@ S3method(fortify,sfg) S3method(fortify,summary.glht) S3method(fortify,tbl) S3method(fortify,tbl_df) -S3method(get_alt_text,ggplot) -S3method(get_alt_text,ggplot_built) -S3method(get_alt_text,gtable) -S3method(ggplot,"function") -S3method(ggplot,default) -S3method(ggplot_add,"NULL") -S3method(ggplot_add,"function") -S3method(ggplot_add,Coord) -S3method(ggplot_add,Facet) -S3method(ggplot_add,Guides) -S3method(ggplot_add,Layer) -S3method(ggplot_add,Scale) -S3method(ggplot_add,by) -S3method(ggplot_add,data.frame) S3method(ggplot_add,default) -S3method(ggplot_add,labels) -S3method(ggplot_add,list) -S3method(ggplot_add,theme) -S3method(ggplot_add,uneval) -S3method(ggplot_build,ggplot) -S3method(ggplot_build,ggplot_built) -S3method(ggplot_gtable,ggplot_built) +S3method(ggplot_build,default) +S3method(ggplot_gtable,default) S3method(grid.draw,absoluteGrob) -S3method(grid.draw,ggplot) S3method(grobHeight,absoluteGrob) S3method(grobHeight,zeroGrob) S3method(grobWidth,absoluteGrob) @@ -98,27 +82,22 @@ S3method(limits,numeric) S3method(makeContext,dotstackGrob) S3method(make_constructor,Geom) S3method(make_constructor,Stat) -S3method(merge_element,default) -S3method(merge_element,element) -S3method(merge_element,element_blank) -S3method(merge_element,margin) S3method(pattern_alpha,GridPattern) S3method(pattern_alpha,GridTilingPattern) S3method(pattern_alpha,default) S3method(pattern_alpha,list) -S3method(plot,ggplot) S3method(predictdf,default) S3method(predictdf,glm) S3method(predictdf,locfit) S3method(predictdf,loess) +S3method(print,"ggplot2::ggplot") +S3method(print,"ggplot2::mapping") +S3method(print,"ggplot2::theme") S3method(print,element) -S3method(print,ggplot) S3method(print,ggplot2_bins) S3method(print,ggproto) S3method(print,ggproto_method) S3method(print,rel) -S3method(print,theme) -S3method(print,uneval) S3method(scale_type,Date) S3method(scale_type,POSIXt) S3method(scale_type,character) @@ -132,7 +111,6 @@ S3method(scale_type,logical) S3method(scale_type,numeric) S3method(scale_type,ordered) S3method(scale_type,sfc) -S3method(summary,ggplot) S3method(vec_cast,character.mapped_discrete) S3method(vec_cast,double.mapped_discrete) S3method(vec_cast,factor.mapped_discrete) @@ -311,8 +289,14 @@ export(autoplot) export(benchplot) export(binned_scale) export(borders) +export(build_ggplot) export(calc_element) export(check_device) +export(class_ggplot) +export(class_ggplot_built) +export(class_labels) +export(class_mapping) +export(class_theme) export(combine_vars) export(complete_theme) export(continuous_scale) @@ -334,6 +318,7 @@ export(cut_width) export(datetime_scale) export(derive) export(discrete_scale) +export(draw_element) export(draw_key_abline) export(draw_key_blank) export(draw_key_boxplot) @@ -353,6 +338,7 @@ export(draw_key_vline) export(draw_key_vpath) export(dup_axis) export(el_def) +export(element) export(element_blank) export(element_geom) export(element_grob) @@ -456,6 +442,7 @@ export(ggproto) export(ggproto_parent) export(ggsave) export(ggtitle) +export(gtable_ggplot) export(guide_axis) export(guide_axis_logticks) export(guide_axis_stack) @@ -762,6 +749,7 @@ export(transform_position) export(translate_shape_string) export(unit) export(update_geom_defaults) +export(update_ggplot) export(update_labels) export(update_stat_defaults) export(update_theme) @@ -773,6 +761,7 @@ export(xlim) export(ylab) export(ylim) export(zeroGrob) +if (getRversion() < "4.3.0") importFrom("S7", "@") import(grid) import(gtable) import(rlang) diff --git a/NEWS.md b/NEWS.md index 54f8c1429a..894584924d 100644 --- a/NEWS.md +++ b/NEWS.md @@ -4,6 +4,7 @@ ### Breaking changes +* The S3 parts of ggplot2 have been replaced with S7 bits (#6352). * (breaking) `geom_violin(quantiles)` now has actual quantiles based on the data, rather than inferred quantiles based on the computed density. The `quantiles` parameter that replaces `draw_quantiles` now belongs to @@ -20,9 +21,10 @@ * Moved mgcv from Imports to Suggests * Moved tibble from Imports to Suggests * Removed glue dependency -* Default labels are derived in `ggplot_build()` rather than - in `ggplot_add.Layer()`. This may affect code that accessed the `plot$labels` - field (@teunbrand, #5894). +* Default labels are derived in `build_ggplot()` (previously `ggplot_build()`) + rather than in the layer method of `update_ggplot()` + (previously `ggplot_add.Layer()`). This may affect code that accessed the + `plot$labels` property (@teunbrand, #5894). ### Lifecycle changes diff --git a/R/aes.R b/R/aes.R index 33eae1de83..a4579cf2a5 100644 --- a/R/aes.R +++ b/R/aes.R @@ -46,8 +46,8 @@ NULL #' 'AsIs' variables. #' #' @family aesthetics documentation -#' @return A list with class `uneval`. Components of the list are either -#' quosures or constants. +#' @return An S7 object representing a list with class `mapping`. Components of +#' the list are either quosures or constants. #' @export #' @examples #' aes(x = mpg, y = wt) @@ -105,13 +105,12 @@ aes <- function(x, y, ...) { inject(aes(!!!args)) }) - aes <- new_aes(args, env = parent.frame()) - rename_aes(aes) + class_mapping(rename_aes(args), env = parent.frame()) } #' @export #' @rdname is_tests -is_mapping <- function(x) inherits(x, "uneval") +is_mapping <- function(x) S7::S7_inherits(x, class_mapping) # Wrap symbolic objects in quosures but pull out constants out of # quosures for backward-compatibility @@ -130,14 +129,10 @@ new_aesthetic <- function(x, env = globalenv()) { x } -new_aes <- function(x, env = globalenv()) { - check_object(x, is.list, "a {.cls list}") - x <- lapply(x, new_aesthetic, env = env) - structure(x, class = "uneval") -} #' @export -print.uneval <- function(x, ...) { +# TODO: should convert to proper S7 method once bug in S7 is resolved +`print.ggplot2::mapping` <- function(x, ...) { cat("Aesthetic mapping: \n") if (length(x) == 0) { @@ -152,26 +147,24 @@ print.uneval <- function(x, ...) { invisible(x) } +# TODO: should convert to proper S7 method once bug in S7 is resolved #' @export -"[.uneval" <- function(x, i, ...) { - new_aes(NextMethod()) +"[.ggplot2::mapping" <- function(x, i, ...) { + class_mapping(NextMethod()) } # If necessary coerce replacements to quosures for compatibility #' @export -"[[<-.uneval" <- function(x, i, value) { - new_aes(NextMethod()) +"[[<-.ggplot2::mapping" <- function(x, i, value) { + class_mapping(NextMethod()) } #' @export -"$<-.uneval" <- function(x, i, value) { - # Can't use NextMethod() because of a bug in R 3.1 - x <- unclass(x) - x[[i]] <- value - new_aes(x) +"$<-.ggplot2::mapping" <- function(x, i, value) { + class_mapping(NextMethod()) } #' @export -"[<-.uneval" <- function(x, i, value) { - new_aes(NextMethod()) +"[<-.ggplot2::mapping" <- function(x, i, value) { + class_mapping(NextMethod()) } #' Standardise aesthetic names @@ -212,8 +205,7 @@ substitute_aes <- function(x, fun = standardise_aes_symbols, ...) { x <- lapply(x, function(aesthetic) { as_quosure(fun(quo_get_expr(aesthetic), ...), env = environment(aesthetic)) }) - class(x) <- "uneval" - x + class_mapping(x) } # x is a quoted expression from inside aes() standardise_aes_symbols <- function(x) { @@ -311,7 +303,7 @@ aes_ <- function(x, y, ...) { } } mapping <- lapply(mapping, as_quosure_aes) - structure(rename_aes(mapping), class = "uneval") + class_mapping(rename_aes(mapping)) } #' @rdname aes_ @@ -337,7 +329,7 @@ aes_string <- function(x, y, ...) { new_aesthetic(x, env = caller_env) }) - structure(rename_aes(mapping), class = "uneval") + class_mapping(rename_aes(mapping)) } #' @export @@ -358,10 +350,9 @@ aes_all <- function(vars) { # Quosure the symbols in the empty environment because they can only # refer to the data mask - structure( - lapply(vars, function(x) new_quosure(as.name(x), emptyenv())), - class = c("unlabelled_uneval", "uneval") - ) + x <- class_mapping(lapply(vars, function(x) new_quosure(as.name(x), emptyenv()))) + class(x) <- union("unlabelled", class(x)) + x } #' Automatic aesthetic mapping diff --git a/R/all-classes.R b/R/all-classes.R new file mode 100644 index 0000000000..625468d314 --- /dev/null +++ b/R/all-classes.R @@ -0,0 +1,197 @@ +# S3 classes -------------------------------------------------------------- + +# Meta classes: +# TODO: These should be replaced once R 4.3.0 is the minimum version as `+` +# dispatch should work as intended. +class_gg <- S7::new_class("gg", abstract = TRUE) +class_S3_gg <- S7::new_S3_class("gg") + +# Proper S3 classes we need awareness for +class_ggproto <- S7::new_S3_class("ggproto") +class_gtable <- S7::new_S3_class("gtable") + +# The important ggproto classes that we treat as S3 classes in S7 even though +# they are their own thing. +class_scale <- S7::new_S3_class("Scale") +class_guides <- S7::new_S3_class("Guides") +class_coord <- S7::new_S3_class("Coord") +class_facet <- S7::new_S3_class("Facet") +class_layer <- S7::new_S3_class("Layer") +class_layout <- S7::new_S3_class("Layout") +class_scales_list <- S7::new_S3_class("ScalesList") + +# User facing classes ----------------------------------------------------- + +#' The theme class +#' +#' The theme class holds information on how non-data elements of the plot +#' should be rendered. The preferred way to construct an object of this class +#' is through the [`theme()`] function. +#' +#' @param elements A named list containing theme elements. +#' @param complete A boolean value stating whether a theme is complete. +#' @param validate A boolean value stating whether a theme should still be +#' validated. +#' +#' @keywords internal +#' @export +class_theme <- S7::new_class( + "theme", class_S3_gg, + properties = list( + complete = S7::class_logical, + validate = S7::class_logical + ), + constructor = function(elements, complete, validate) { + S7::new_object( + elements, + complete = complete, + validate = validate + ) + } +) + +#' The labels class +#' +#' The labels class holds a list with label information to display as titles +#' of plot components. The preferred way to construct an object of the labels +#' class is to use the [`labs()`] function. +#' +#' @param labels A named list. +#' +#' @keywords internal +#' @export +class_labels <- S7::new_class( + "labels", parent = class_S3_gg, + constructor = function(labels) S7::new_object(labels), + validator = function(self) { + if (!is.list(self)) { + return("labels must be a list.") + } + if (!is_named2(self)) { + return("every label must be named.") + } + dups <- unique(names(self)[duplicated(names(self))]) + if (length(dups) > 0) { + dups <- oxford_comma(dups, final = "and") + return(paste0("labels cannot contain duplicate names (", dups, ").")) + } + return(NULL) + } +) + +#' The mapping class +#' +#' The mapping class holds a list of quoted expressions +#' ([quosures][rlang::topic-quosure]) or constants. An object is typically +#' constructed using the [`aes()`] function. +#' +#' @param x A list of quosures and constants. +#' @param env An environment for symbols that are not quosures or constants. +#' +#' @keywords internal +#' @export +class_mapping <- S7::new_class( + "mapping", parent = class_S3_gg, + constructor = function(x, env = globalenv()) { + check_object(x, is.list, "a {.cls list}") + x <- lapply(x, new_aesthetic, env = env) + S7::new_object(x) + } +) + +#' The ggplot class +#' +#' The ggplot class collects the needed information to render a plot. +#' This class can be constructed using the [`ggplot()`] function. +#' +#' @param data A property containing any data coerced by [`fortify()`]. +#' @param layers A list of layer instances created by [`layer()`]. +#' @param scales A ScalesList ggproto object. +#' @param guides A Guides ggproto object created by [`guides()`]. +#' @param mapping A mapping class object created by [`aes()`]. +#' @param theme A theme class object created by [`theme()`]. +#' @param coordinates A Coord ggproto object created by `coord_*()` family of +#' functions. +#' @param facet A Facet ggproto object created by `facet_*()` family of +#' functions. +#' @param layout A Layout ggproto object. +#' @param labels A labels object created by [`labs()`]. +#' @param meta A list for additional metadata. This will be deprecated in the +#' future. +#' @param plot_env An environment. +#' +#' @keywords internal +#' @export +class_ggplot <- S7::new_class( + name = "ggplot", parent = class_gg, + properties = list( + data = S7::class_any, + layers = S7::class_list, + scales = class_scales_list, + guides = class_guides, + mapping = class_mapping, + theme = class_theme, + coordinates = class_coord, + facet = class_facet, + layout = class_layout, + labels = class_labels, + meta = S7::class_list, + plot_env = S7::class_environment + ), + constructor = function(data = waiver(), layers = list(), scales = NULL, + guides = NULL, mapping = aes(), theme = NULL, + coordinates = coord_cartesian(default = TRUE), + facet = facet_null(), layout = NULL, + labels = labs(), meta = list(), + plot_env = parent.frame()) { + S7::new_object( + S7::S7_object(), + data = data, + layers = layers, + scales = scales %||% scales_list(), + guides = guides %||% guides_list(), + mapping = mapping, + theme = theme %||% theme(), + coordinates = coordinates, + facet = facet, + layout = layout %||% ggproto(NULL, Layout), + labels = labels, + meta = meta, + plot_env = plot_env + ) + } +) + +#' The ggplot built class +#' +#' The ggplot built class is an intermediate class and represents a processed +#' ggplot object ready for rendering. It is constructed by calling +#' [`ggplot_build()`] on a [ggplot][class_ggplot] object and is not meant to be +#' instantiated directly. The class can be rendered to a gtable object by +#' calling the [`ggplot_gtable()`] function on a ggplot built class object. +#' +#' @param data A list of plain data frames; one for each layer. +#' @param layout A Layout ggproto object. +#' @param plot A completed ggplot class object. +#' +#' @keywords internal +#' @export +class_ggplot_built <- S7::new_class( + "ggplot_built", parent = class_gg, + properties = list( + data = S7::class_list, + layout = class_layout, + plot = class_ggplot + ), + constructor = function(data = NULL, layout = NULL, plot = NULL) { + if (is.null(data) || is.null(layout) || is.null(plot)) { + cli::cli_abort( + "The {.cls ggplot_built} class should be constructed by {.fn ggplot_build}." + ) + } + S7::new_object( + S7::S7_object(), + data = data, layout = layout, plot = plot + ) + } +) diff --git a/R/backports.R b/R/backports.R index 7ccedc4296..53ab2a6f7e 100644 --- a/R/backports.R +++ b/R/backports.R @@ -15,6 +15,10 @@ if (getRversion() < "3.3") { backport_unit_methods <- function() {} } +# enable usage of @name in package code +#' @rawNamespace if (getRversion() < "4.3.0") importFrom("S7", "@") +NULL + on_load(backport_unit_methods()) unitType <- function(x) { diff --git a/R/bench.R b/R/bench.R index 4d679b8e31..81835836ac 100644 --- a/R/bench.R +++ b/R/bench.R @@ -15,7 +15,7 @@ benchplot <- function(x) { x <- enquo(x) construct <- system.time(x <- eval_tidy(x)) - check_inherits(x, "ggplot") + check_inherits(x, "ggplot2::ggplot") build <- system.time(data <- ggplot_build(x)) render <- system.time(grob <- ggplot_gtable(data)) diff --git a/R/coord-sf.R b/R/coord-sf.R index 16967cda8c..5757cdc0b1 100644 --- a/R/coord-sf.R +++ b/R/coord-sf.R @@ -339,9 +339,9 @@ CoordSf <- ggproto("CoordSf", CoordCartesian, grobs <- list(element_render(theme, "panel.background")) } else { line_gp <- gg_par( - col = el$colour, - lwd = el$linewidth, - lty = el$linetype + col = el@colour, + lwd = el@linewidth, + lty = el@linetype ) grobs <- c( list(element_render(theme, "panel.background")), diff --git a/R/facet-.R b/R/facet-.R index ee36aa50c6..e4a010d612 100644 --- a/R/facet-.R +++ b/R/facet-.R @@ -958,9 +958,9 @@ is.facet <- function(x) { #' get_strip_labels(p + facet_grid(year ~ cyl)) get_strip_labels <- function(plot = get_last_plot()) { plot <- ggplot_build(plot) - layout <- plot$layout$layout - params <- plot$layout$facet_params - plot$plot$facet$format_strip_labels(layout, params) + layout <- plot@layout$layout + params <- plot@layout$facet_params + plot@plot@facet$format_strip_labels(layout, params) } # A "special" value, currently not used but could be used to determine @@ -1052,7 +1052,7 @@ check_vars <- function(x) { } # Native pipe have higher precedence than + so any type of gg object can be # expected here, not just ggplot - if (inherits(x, "gg")) { + if (S7::S7_inherits(x, class_gg)) { cli::cli_abort(c( "Please use {.fn vars} to supply facet variables.", "i" = "Did you use {.code %>%} or {.code |>} instead of {.code +}?" diff --git a/R/facet-grid-.R b/R/facet-grid-.R index 244ccc69f7..6f05fb0005 100644 --- a/R/facet-grid-.R +++ b/R/facet-grid-.R @@ -206,7 +206,7 @@ grid_as_facets_list <- function(rows, cols) { msg <- "{.arg rows} must be {.code NULL} or a {.fn vars} list if {.arg cols} is a {.fn vars} list." # Native pipe have higher precedence than + so any type of gg object can be # expected here, not just ggplot - if (inherits(rows, "gg")) { + if (S7::S7_inherits(rows, class_gg)) { msg <- c( msg, "i" = "Did you use {.code %>%} or {.code |>} instead of {.code +}?" diff --git a/R/geom-.R b/R/geom-.R index bcb8a49a21..339750450c 100644 --- a/R/geom-.R +++ b/R/geom-.R @@ -474,7 +474,7 @@ eval_from_theme <- function(aesthetics, theme, class = NULL) { return(aesthetics) } - element <- calc_element("geom", theme) %||% .default_geom_element + el <- calc_element("geom", theme) %||% .default_geom_element class <- setdiff(class, c("Geom", "ggproto", "gg")) if (length(class) > 0) { @@ -489,12 +489,12 @@ eval_from_theme <- function(aesthetics, theme, class = NULL) { # Inherit up to parent geom class if (length(class) > 0) { for (cls in rev(class)) { - element <- combine_elements(theme[[cls]], element) + el <- combine_elements(theme[[cls]], el) } } } - lapply(aesthetics[themed], eval_tidy, data = element) + lapply(aesthetics[themed], eval_tidy, data = S7::props(el)) } #' Graphical units diff --git a/R/geom-label.R b/R/geom-label.R index a49a1fbaed..15120bf6fd 100644 --- a/R/geom-label.R +++ b/R/geom-label.R @@ -87,7 +87,7 @@ GeomLabel <- ggproto("GeomLabel", Geom, data <- coord$transform(data, panel_params) data$vjust <- compute_just(data$vjust, data$y, data$x, data$angle) data$hjust <- compute_just(data$hjust, data$x, data$y, data$angle) - if (!is_margin("margin")) { + if (!is_margin(label.padding)) { label.padding <- rep(label.padding, length.out = 4) } diff --git a/R/guide-.R b/R/guide-.R index fe3a65bbca..8b0cee001f 100644 --- a/R/guide-.R +++ b/R/guide-.R @@ -697,6 +697,8 @@ Guide <- ggproto( #' A grob representing tick marks. build_ticks = function(key, elements, params, position = params$position, length = elements$ticks_length) { + force(length) + # TODO: position logic is crooked, should this be reversed? if (!is_theme_element(elements)) { elements <- elements$ticks diff --git a/R/guide-axis-logticks.R b/R/guide-axis-logticks.R index 41fbbe4ab9..1a66637b31 100644 --- a/R/guide-axis-logticks.R +++ b/R/guide-axis-logticks.R @@ -121,7 +121,7 @@ guide_axis_logticks <- function( allow_null = TRUE ) check_bool(expanded) - check_inherits(short.theme, c("element_blank", "element_line")) + check_inherits(short.theme, c("ggplot2::element_blank", "ggplot2::element_line")) new_guide( available_aes = c("x", "y"), diff --git a/R/guide-axis-theta.R b/R/guide-axis-theta.R index e5c12e6cd8..5f07efecbe 100644 --- a/R/guide-axis-theta.R +++ b/R/guide-axis-theta.R @@ -154,7 +154,7 @@ GuideAxisTheta <- ggproto( } offset <- max(unit(0, "pt"), elements$major_length, elements$minor_length) - elements$offset <- offset + max(elements$text$margin %||% unit(0, "pt")) + elements$offset <- offset + max(elements$text@margin %||% unit(0, "pt")) elements }, @@ -198,7 +198,7 @@ GuideAxisTheta <- ggproto( # Resolve text angle if (is_waiver(params$angle) || is.null(params$angle)) { - angle <- elements$text$angle + angle <- elements$text@angle } else { angle <- flip_text_angle(params$angle - rad2deg(key$theta)) } @@ -274,14 +274,14 @@ GuideAxisTheta <- ggproto( # Resolve text angle if (is_waiver(params$angle %||% waiver())) { - angle <- elements$text$angle + angle <- elements$text@angle } else { angle <- flip_text_angle(params$angle - rad2deg(key$theta)) } angle <- key$theta + deg2rad(angle) # Set margin - margin <- rep(max(elements$text$margin), length.out = 4) + margin <- rep(max(elements$text@margin), length.out = 4) # Measure size of each individual label single_labels <- lapply(labels, function(lab) { diff --git a/R/guide-axis.R b/R/guide-axis.R index ae1784236f..34559154c3 100644 --- a/R/guide-axis.R +++ b/R/guide-axis.R @@ -454,13 +454,13 @@ GuideAxis <- ggproto( # rather than dimensions of this axis alone. if (has_labels && params$position %in% c("left", "right")) { where <- layout$l[-c(1, length(layout$l))] - just <- with(elements$text, rotate_just(angle, hjust, vjust))$hjust %||% 0.5 + just <- with(S7::props(elements$text), rotate_just(angle, hjust, vjust))$hjust %||% 0.5 gt <- gtable_add_cols(gt, unit(just, "null"), pos = min(where) - 1) gt <- gtable_add_cols(gt, unit(1 - just, "null"), pos = max(where) + 1) } if (has_labels && params$position %in% c("top", "bottom")) { where <- layout$t[-c(1, length(layout$t))] - just <- with(elements$text, rotate_just(angle, hjust, vjust))$vjust %||% 0.5 + just <- with(S7::props(elements$text), rotate_just(angle, hjust, vjust))$vjust %||% 0.5 gt <- gtable_add_rows(gt, unit(1 - just, "null"), pos = min(where) - 1) gt <- gtable_add_rows(gt, unit(just, "null"), pos = max(where) + 1) } @@ -616,8 +616,8 @@ label_angle_heuristic <- function(element, position, angle) { hjust <- switch(position, left = cosine, right = 1 - cosine, top = 1 - sine, sine) vjust <- switch(position, left = 1 - sine, right = sine, top = 1 - cosine, cosine) - element$angle <- angle %||% element$angle - element$hjust <- hjust %||% element$hjust - element$vjust <- vjust %||% element$vjust + element@angle <- angle %||% element@angle + element@hjust <- hjust %||% element@hjust + element@vjust <- vjust %||% element@vjust element } diff --git a/R/guide-custom.R b/R/guide-custom.R index c16260265e..c0d862f5be 100644 --- a/R/guide-custom.R +++ b/R/guide-custom.R @@ -113,7 +113,7 @@ GuideCustom <- ggproto( gt <- self$add_title( gt, title, title_position, - with(elems$title, rotate_just(angle, hjust, vjust)) + with(S7::props(elems$title), rotate_just(angle, hjust, vjust)) ) # Add padding and background diff --git a/R/guide-legend.R b/R/guide-legend.R index 884b59cbf8..8aad462e65 100644 --- a/R/guide-legend.R +++ b/R/guide-legend.R @@ -326,7 +326,7 @@ GuideLegend <- ggproto( # Resolve title. The trick here is to override the main text element, so # that any settings declared in `legend.title` will be honoured but we have # custom defaults for the guide. - margin <- calc_element("text", theme)$margin + margin <- calc_element("text", theme)@margin title <- theme(text = element_text( hjust = 0, vjust = 0.5, margin = position_margin(title_position, margin, gap) @@ -574,7 +574,7 @@ GuideLegend <- ggproto( gt <- self$add_title( gt, grobs$title, elements$title_position, - with(elements$title, rotate_just(angle, hjust, vjust)) + with(S7::props(elements$title), rotate_just(angle, hjust, vjust)) ) gt <- gtable_add_padding(gt, unit(elements$padding, "cm")) @@ -691,13 +691,17 @@ keep_key_data <- function(key, data, aes, show) { position_margin <- function(position, margin = NULL, gap = unit(0, "pt")) { margin <- margin %||% margin() - switch( + margin <- switch( position, top = replace(margin, 3, margin[3] + gap), bottom = replace(margin, 1, margin[1] + gap), left = replace(margin, 2, margin[2] + gap), right = replace(margin, 4, margin[4] + gap) ) + # We have to manually reconstitute the class because the 'simpleUnit' class + # might be dropped by the replacement operation. + class(margin) <- c("ggplot2::margin", class(margin), "S7_object") + margin } # Function implementing backward compatibility with the old way of specifying diff --git a/R/guides-.R b/R/guides-.R index 38a94252b0..a72e7d60db 100644 --- a/R/guides-.R +++ b/R/guides-.R @@ -835,7 +835,7 @@ get_guide_data <- function(plot = get_last_plot(), aesthetic, panel = 1L) { if (!aesthetic %in% c("x", "y", "x.sec", "y.sec", "theta", "r")) { # Non position guides: check if aesthetic in colnames of key - keys <- lapply(plot$plot$guides$params, `[[`, "key") + keys <- lapply(plot@plot@guides$params, `[[`, "key") keep <- vapply(keys, function(x) any(colnames(x) %in% aesthetic), logical(1)) keys <- switch(sum(keep) + 1, NULL, keys[[which(keep)]], keys[keep]) return(keys) @@ -843,12 +843,12 @@ get_guide_data <- function(plot = get_last_plot(), aesthetic, panel = 1L) { # Position guides: find the right layout entry check_number_whole(panel) - layout <- plot$layout$layout + layout <- plot@layout$layout select <- layout[layout$PANEL == panel, , drop = FALSE] if (nrow(select) == 0) { return(NULL) } - params <- plot$layout$panel_params[select$PANEL][[1]] + params <- plot@layout$panel_params[select$PANEL][[1]] # If panel params don't have guides, we probably have old coord system # that doesn't use the guide system. @@ -941,7 +941,13 @@ redistribute_null_units <- function(units, spacing, margin, type = "width") { # Get spacing between guides and margins in absolute units size <- switch(type, width = width_cm, height = height_cm) - spacing <- sum(rep(spacing, length.out = length(units) - 1)) + if (length(units) < 2) { + # When we have 1 guide, we don't need any spacing + spacing <- unit(0, "cm") + } else { + spacing <- sum(rep(spacing, length.out = length(units) - 1)) + } + margin <- switch(type, width = margin[c(2, 4)], height = margin[c(1, 3)]) margin <- sum(size(margin)) diff --git a/R/labels.R b/R/labels.R index 309f38902e..c37f54b69c 100644 --- a/R/labels.R +++ b/R/labels.R @@ -12,7 +12,7 @@ #' update_labels(p, list(colour = "Fail silently")) update_labels <- function(p, labels) { p <- plot_clone(p) - p$labels <- defaults(labels, p$labels) + p@labels <- labs(!!!defaults(labels, p@labels)) p } @@ -26,7 +26,7 @@ setup_plot_labels <- function(plot, layers, data) { layer <- layers[[i]] mapping <- layer$computed_mapping - if (inherits(mapping, "unlabelled_uneval")) { + if (inherits(mapping, "unlabelled")) { next } @@ -75,7 +75,7 @@ setup_plot_labels <- function(plot, layers, data) { # Warn for spurious labels that don't have a mapping. # Note: sometimes, 'x' and 'y' might not have a mapping, like in # `geom_function()`. We can display these labels anyway, so we include them. - plot_labels <- plot$labels + plot_labels <- plot@labels known_labels <- c(names(labels), fn_fmls_names(labs), "x", "y") extra_labels <- setdiff(names(plot_labels), known_labels) @@ -108,7 +108,7 @@ setup_plot_labels <- function(plot, layers, data) { }) } - defaults(plot_labels, labels) + labs(!!!defaults(plot_labels, labels)) } #' Modify axis, legend, and plot labels @@ -181,21 +181,20 @@ setup_plot_labels <- function(plot, layers, data) { #' p + #' labs(title = "title") + #' labs(title = NULL) -labs <- function(..., title = waiver(), subtitle = waiver(), caption = waiver(), - tag = waiver(), dictionary = waiver(), alt = waiver(), - alt_insight = waiver()) { +labs <- function(..., title = waiver(), subtitle = waiver(), + caption = waiver(), tag = waiver(), dictionary = waiver(), + alt = waiver(), alt_insight = waiver()) { # .ignore_empty = "all" is needed to allow trailing commas, which is NOT a trailing comma for dots_list() as it's in ... args <- dots_list(..., title = title, subtitle = subtitle, caption = caption, - tag = tag, alt = allow_lambda(alt), alt_insight = alt_insight, - dictionary = dictionary, .ignore_empty = "all") + tag = tag, alt = allow_lambda(alt), alt_insight = alt_insight, + dictionary = dictionary, .ignore_empty = "all") is_waive <- vapply(args, is_waiver, logical(1)) args <- args[!is_waive] # remove duplicated arguments args <- args[!duplicated(names(args))] args <- rename_aes(args) - - structure(args, class = c("labels", "gg")) + class_labels(args) } #' @rdname labs @@ -231,18 +230,18 @@ ggtitle <- function(label, subtitle = waiver()) { get_labs <- function(plot = get_last_plot()) { plot <- ggplot_build(plot) - labs <- plot$plot$labels + labs <- plot@plot@labels xy_labs <- rename( - c(x = plot$layout$resolve_label(plot$layout$panel_scales_x[[1]], labs), - y = plot$layout$resolve_label(plot$layout$panel_scales_y[[1]], labs)), + c(x = plot@layout$resolve_label(plot@layout$panel_scales_x[[1]], labs), + y = plot@layout$resolve_label(plot@layout$panel_scales_y[[1]], labs)), c(x.primary = "x", x.secondary = "x.sec", y.primary = "y", y.secondary = "y.sec") ) labs <- defaults(xy_labs, labs) - guides <- plot$plot$guides + guides <- plot@plot@guides if (length(guides$aesthetics) == 0) { return(labs) } @@ -286,29 +285,29 @@ get_labs <- function(plot = get_last_plot()) { #' #' get_alt_text(p) #' -get_alt_text <- function(p, ...) { +get_alt_text <- S7::new_generic("get_alt_text", "p", fun = function(p, ...) { warn_dots_used() - UseMethod("get_alt_text") -} -#' @export -get_alt_text.ggplot <- function(p, ...) { - alt <- p$labels[["alt"]] %||% "" + S7::S7_dispatch() +}) + +S7::method(get_alt_text, class_ggplot) <- function(p, ...) { + alt <- p@labels[["alt"]] %||% "" if (!is.function(alt)) { return(alt) } - p$labels[["alt"]] <- NULL + p@labels[["alt"]] <- NULL build <- ggplot_build(p) - build$plot$labels[["alt"]] <- alt + build@plot@labels[["alt"]] <- alt get_alt_text(build) } -#' @export -get_alt_text.ggplot_built <- function(p, ...) { - alt <- p$plot$labels[["alt"]] %||% "" - p$plot$labels[["alt"]] <- NULL - if (is.function(alt)) alt(p$plot) else alt + +S7::method(get_alt_text, class_ggplot_built) <- function(p, ...) { + alt <- p@plot@labels[["alt"]] %||% "" + p@plot@labels[["alt"]] <- NULL + if (is.function(alt)) alt(p@plot) else alt } -#' @export -get_alt_text.gtable <- function(p, ...) { + +S7::method(get_alt_text, class_gtable) <- function(p, ...) { attr(p, "alt-label") %||% "" } @@ -358,8 +357,8 @@ get_alt_text.gtable <- function(p, ...) { #' generate_alt_text <- function(p) { # Combine titles - if (!is.null(p$labels$title %||% p$labels$subtitle)) { - title <- sub("\\.?$", "", c(p$labels$title, p$labels$subtitle)) + if (!is.null(p@labels$title %||% p@labels$subtitle)) { + title <- sub("\\.?$", "", c(p@labels$title, p@labels$subtitle)) if (length(title) == 2) { title <- paste0(title[1], ": ", title[2]) } @@ -375,7 +374,7 @@ generate_alt_text <- function(p) { axes <- safe_string(axes) # Get layer types - layers <- vapply(p$layers, function(l) snake_class(l$geom), character(1)) + layers <- vapply(p@layers, function(l) snake_class(l$geom), character(1)) layers <- sub("_", " ", sub("^geom_", "", unique0(layers))) if (length(layers) == 1) { layers <- paste0(" using a ", layers, " layer") @@ -386,8 +385,8 @@ generate_alt_text <- function(p) { # Combine alt <- paste0(title, "A plot", axes, layers, ".") - if (!is.null(p$labels$alt_insight)) { - alt <- paste0(alt, " ", p$labels$alt_insight) + if (!is.null(p@labels$alt_insight)) { + alt <- paste0(alt, " ", p@labels$alt_insight) } as.character(alt) } @@ -395,12 +394,12 @@ safe_string <- function(string) { if (length(string) == 0) "" else string } scale_description <- function(p, name) { - scale <- p$scales$get_scales(name) + scale <- p@scales$get_scales(name) if (is.null(scale)) { - lab <- p$labels[[name]] + lab <- p@labels[[name]] type <- "the" } else { - lab <- scale$make_title(scale$name %|W|% p$labels[[name]]) + lab <- scale$make_title(scale$name %|W|% p@labels[[name]]) type <- "a continuous" if (scale$is_discrete()) type <- "a discrete" if (inherits(scale, "ScaleBinned")) type <- "a binned" diff --git a/R/layer-sf.R b/R/layer-sf.R index 3a282e734f..65eeda8b38 100644 --- a/R/layer-sf.R +++ b/R/layer-sf.R @@ -44,13 +44,9 @@ LayerSf <- ggproto("LayerSf", Layer, # automatically determine the name of the geometry column # and add the mapping if it doesn't exist - if ((isTRUE(self$inherit.aes) && is.null(self$computed_mapping$geometry) && - is.null(plot$computed_mapping$geometry)) || - (!isTRUE(self$inherit.aes) && is.null(self$computed_mapping$geometry))) { - if (is_sf(data)) { - geometry_col <- attr(data, "sf_column") - self$computed_mapping$geometry <- sym(geometry_col) - } + if (is.null(self$computed_mapping$geometry) && is_sf(data)) { + geometry_col <- attr(data, "sf_column") + self$computed_mapping$geometry <- sym(geometry_col) } data }, diff --git a/R/layer.R b/R/layer.R index 69f9b5893c..4e130ae7be 100644 --- a/R/layer.R +++ b/R/layer.R @@ -200,11 +200,17 @@ layer <- function(geom = NULL, stat = NULL, } validate_mapping <- function(mapping, call = caller_env()) { + # Upgrade any old S3 input to new S7 input + # TODO: deprecate this after a while + if (inherits(mapping, "uneval") && is.list(mapping)) { + mapping <- aes(!!!mapping) + } + if (!is_mapping(mapping)) { msg <- "{.arg mapping} must be created by {.fn aes}." # Native pipe have higher precedence than + so any type of gg object can be # expected here, not just ggplot - if (inherits(mapping, "gg")) { + if (S7::S7_inherits(mapping, class_gg)) { msg <- c(msg, "i" = "Did you use {.code %>%} or {.code |>} instead of {.code +}?") } @@ -214,7 +220,7 @@ validate_mapping <- function(mapping, call = caller_env()) { } # For backward compatibility with pre-tidy-eval layers - new_aes(mapping) + class_mapping(mapping) } #' Layers @@ -484,18 +490,16 @@ Layer <- ggproto("Layer", NULL, setup_layer = function(self, data, plot) { # For annotation geoms, it is useful to be able to ignore the default aes if (isTRUE(self$inherit.aes)) { - self$computed_mapping <- defaults(self$mapping, plot$mapping) + self$computed_mapping <- class_mapping(defaults(self$mapping, plot@mapping)) # Inherit size as linewidth from global mapping if (self$geom$rename_size && - "size" %in% names(plot$mapping) && + "size" %in% names(plot@mapping) && !"linewidth" %in% names(self$computed_mapping) && "linewidth" %in% self$geom$aesthetics()) { - self$computed_mapping$size <- plot$mapping$size + self$computed_mapping$size <- plot@mapping$size deprecate_warn0("3.4.0", I("Using `size` aesthetic for lines"), I("`linewidth`")) } - # defaults() strips class, but it needs to be preserved for now - class(self$computed_mapping) <- "uneval" } else { self$computed_mapping <- self$mapping } @@ -543,7 +547,7 @@ Layer <- ggproto("Layer", NULL, # Evaluate aesthetics evaled <- eval_aesthetics(aesthetics, data) - plot$scales$add_defaults(evaled, plot$plot_env) + plot@scales$add_defaults(evaled, plot@plot_env) # Check for discouraged usage in mapping warn_for_aes_extract_usage(aesthetics, data[setdiff(names(data), "PANEL")]) @@ -658,7 +662,7 @@ Layer <- ggproto("Layer", NULL, if (length(new) == 0) return(data) # data needs to be non-scaled - data_orig <- plot$scales$backtransform_df(data) + data_orig <- plot@scales$backtransform_df(data) # Add map stat output to aesthetics stat_data <- eval_aesthetics( @@ -675,11 +679,11 @@ Layer <- ggproto("Layer", NULL, stat_data <- data_frame0(!!!stat_data) # Add any new scales, if needed - plot$scales$add_defaults(stat_data, plot$plot_env) + plot@scales$add_defaults(stat_data, plot@plot_env) # Transform the values, if the scale say it's ok # (see stat_spoke for one exception) if (self$stat$retransform) { - stat_data <- plot$scales$transform_df(stat_data) + stat_data <- plot@scales$transform_df(stat_data) } stat_data <- cleanup_mismatched_data(stat_data, nrow(data), "after_stat") data[names(stat_data)] <- stat_data diff --git a/R/margins.R b/R/margins.R index 561aefb7bd..a010a87738 100644 --- a/R/margins.R +++ b/R/margins.R @@ -1,17 +1,21 @@ +#' @include properties.R + #' @param t,r,b,l Dimensions of each margin. (To remember order, think trouble). #' @param unit Default units of dimensions. Defaults to "pt" so it #' can be most easily scaled with the text. #' @rdname element #' @export -margin <- function(t = 0, r = 0, b = 0, l = 0, unit = "pt") { - u <- unit(c(t, r, b, l), unit) - class(u) <- c("margin", class(u)) - u -} +margin <- S7::new_class( + "margin", parent = S7::new_S3_class(c("simpleUnit", "unit", "unit_v2")), + constructor = function(t = 0, r = 0, b = 0, l = 0, unit = "pt") { + u <- unit(c(t, r, b, l), unit) + S7::new_object(u) + } +) #' @export #' @rdname is_tests -is_margin <- function(x) inherits(x, "margin") +is_margin <- function(x) S7::S7_inherits(x, margin) is.margin <- function(x) lifecycle::deprecate_stop("3.5.2", "is.margin()", "is_margin()") #' @rdname element diff --git a/R/plot-build.R b/R/plot-build.R index 9cd01b54d5..75d2c6df3e 100644 --- a/R/plot-build.R +++ b/R/plot-build.R @@ -1,9 +1,10 @@ #' Build ggplot for rendering. #' -#' `ggplot_build()` takes the plot object, and performs all steps necessary +#' `build_ggplot()` takes the plot object, and performs all steps necessary #' to produce an object that can be rendered. This function outputs two pieces: #' a list of data frames (one for each layer), and a panel object, which -#' contain all information about axis limits, breaks etc. +#' contain all information about axis limits, breaks etc. The `ggplot_build()` +#' function is vestigial and `build_ggplot()` should be used instead. #' #' `get_layer_data()`, `get_layer_grob()`, and `get_panel_scales()` are helper #' functions that return the data, grob, or scales associated with a given @@ -15,6 +16,7 @@ #' plot). In `get_panel_scales()`, the row of a facet to return scales for. #' @param j An integer. In `get_panel_scales()`, the column of a facet to return #' scales for. +#' @param ... Not currently in use. #' @seealso #' [print.ggplot()] and [benchplot()] for #' functions that contain the complete set of steps for generating @@ -23,44 +25,42 @@ #' The `r link_book("build step section", "internals#sec-ggplotbuild")` #' @keywords internal #' @export -ggplot_build <- function(plot) { - # Attaching the plot env to be fetched by deprecations etc. - attach_plot_env(plot$plot_env) - - UseMethod('ggplot_build') -} +build_ggplot <- S7::new_generic("build_ggplot", "plot", fun = function(plot, ...) { + env <- try_prop(plot, "plot_env") + if (!is.null(env)) { + attach_plot_env(env) + } + S7::S7_dispatch() +}) -#' @export -ggplot_build.ggplot_built <- function(plot) { - # This is a no-op - plot +S7::method(build_ggplot, class_ggplot_built) <- function(plot, ...) { + plot # This is a no-op } -#' @export -ggplot_build.ggplot <- function(plot) { +S7::method(build_ggplot, class_ggplot) <- function(plot, ...) { plot <- plot_clone(plot) - if (length(plot$layers) == 0) { + if (length(plot@layers) == 0) { plot <- plot + geom_blank() } - layers <- plot$layers + layers <- plot@layers data <- rep(list(NULL), length(layers)) - scales <- plot$scales + scales <- plot@scales # Allow all layers to make any final adjustments based # on raw input data and plot info - data <- by_layer(function(l, d) l$layer_data(plot$data), layers, data, "computing layer data") + data <- by_layer(function(l, d) l$layer_data(plot@data), layers, data, "computing layer data") data <- by_layer(function(l, d) l$setup_layer(d, plot), layers, data, "setting up layer") # Initialise panels, add extra data for margins & missing faceting # variables, and add on a PANEL variable to data - layout <- create_layout(plot$facet, plot$coordinates, plot$layout) - data <- layout$setup(data, plot$data, plot$plot_env) + layout <- create_layout(plot@facet, plot@coordinates, plot@layout) + data <- layout$setup(data, plot@data, plot@plot_env) # Compute aesthetics to produce data with generalised variable names data <- by_layer(function(l, d) l$compute_aesthetics(d, plot), layers, data, "computing aesthetics") - plot$labels <- setup_plot_labels(plot, layers, data) + plot@labels <- setup_plot_labels(plot, layers, data) data <- .ignore_data(data) # Transform all scales @@ -80,7 +80,7 @@ ggplot_build.ggplot <- function(plot) { data <- by_layer(function(l, d) l$map_statistic(d, plot), layers, data, "mapping stat to aesthetics") # Make sure missing (but required) aesthetics are added - plot$scales$add_missing(c("x", "y"), plot$plot_env) + plot@scales$add_missing(c("x", "y"), plot@plot_env) # Reparameterise geoms from (e.g.) y and width to ymin and ymax data <- by_layer(function(l, d) l$compute_geom_1(d), layers, data, "setting up geom") @@ -98,27 +98,27 @@ ggplot_build.ggplot <- function(plot) { data <- layout$map_position(data) # Hand off position guides to layout - layout$setup_panel_guides(plot$guides, plot$layers) + layout$setup_panel_guides(plot@guides, plot@layers) # Complete the plot's theme - plot$theme <- plot_theme(plot) + plot@theme <- plot_theme(plot) # Train and map non-position scales and guides npscales <- scales$non_position_scales() if (npscales$n() > 0) { - npscales$set_palettes(plot$theme) + npscales$set_palettes(plot@theme) lapply(data, npscales$train_df) - plot$guides <- plot$guides$build(npscales, plot$layers, plot$labels, data, plot$theme) + plot@guides <- plot@guides$build(npscales, plot@layers, plot@labels, data, plot@theme) data <- lapply(data, npscales$map_df) } else { # Only keep custom guides if there are no non-position scales - plot$guides <- plot$guides$get_custom() + plot@guides <- plot@guides$get_custom() } data <- .expose_data(data) # Fill in defaults etc. data <- by_layer( - function(l, d) l$compute_geom_2(d, theme = plot$theme), + function(l, d) l$compute_geom_2(d, theme = plot@theme), layers, data, "setting up geom aesthetics" ) @@ -129,51 +129,60 @@ ggplot_build.ggplot <- function(plot) { data <- layout$finish_data(data) # Consolidate alt-text - plot$labels$alt <- get_alt_text(plot) + plot@labels$alt <- get_alt_text(plot) - structure( - list(data = data, layout = layout, plot = plot), - class = "ggplot_built" - ) + class_ggplot_built(data = data, layout = layout, plot = plot) } +# TODO: the S3 generic should be phased out once S7 is adopted more widely +#' @rdname build_ggplot #' @export -#' @rdname ggplot_build +ggplot_build <- function(plot, ...) { + UseMethod("ggplot_build") +} + +#' @export +ggplot_build.default <- function(plot, ...) { + build_ggplot(plot) +} + +#' @export +#' @rdname build_ggplot get_layer_data <- function(plot = get_last_plot(), i = 1L) { - ggplot_build(plot)$data[[i]] + ggplot_build(plot)@data[[i]] } #' @export -#' @rdname ggplot_build +#' @rdname build_ggplot layer_data <- get_layer_data #' @export -#' @rdname ggplot_build +#' @rdname build_ggplot get_panel_scales <- function(plot = get_last_plot(), i = 1L, j = 1L) { b <- ggplot_build(plot) - layout <- b$layout$layout + layout <- b@layout$layout selected <- layout[layout$ROW == i & layout$COL == j, , drop = FALSE] list( - x = b$layout$panel_scales_x[[selected$SCALE_X]], - y = b$layout$panel_scales_y[[selected$SCALE_Y]] + x = b@layout$panel_scales_x[[selected$SCALE_X]], + y = b@layout$panel_scales_y[[selected$SCALE_Y]] ) } #' @export -#' @rdname ggplot_build +#' @rdname build_ggplot layer_scales <- get_panel_scales #' @export -#' @rdname ggplot_build +#' @rdname build_ggplot get_layer_grob <- function(plot = get_last_plot(), i = 1L) { b <- ggplot_build(plot) - b$plot$layers[[i]]$draw_geom(b$data[[i]], b$layout) + b@plot@layers[[i]]$draw_geom(b@data[[i]], b@layout) } #' @export -#' @rdname ggplot_build +#' @rdname build_ggplot layer_grob <- get_layer_grob #' Build a plot with all the usual bits and pieces. @@ -184,6 +193,9 @@ layer_grob <- get_layer_grob #' to (e.g.) make the legend box 2 cm wide, or combine multiple plots into #' a single display, preserving aspect ratios across the plots. #' +#' The `ggplot_gtable()` function is vestigial and the `gtable_ggplot()` function +#' should be used instead. +#' #' @seealso #' [print.ggplot()] and [benchplot()] for #' for functions that contain the complete set of steps for generating @@ -194,45 +206,42 @@ layer_grob <- get_layer_grob #' @keywords internal #' @param data plot data generated by [ggplot_build()] #' @export -ggplot_gtable <- function(data) { - # Attaching the plot env to be fetched by deprecations etc. - attach_plot_env(data$plot$plot_env) +gtable_ggplot <- S7::new_generic("gtable_ggplot", "data", function(data) { + attach_plot_env(data@plot@plot_env) + S7::S7_dispatch() +}) - UseMethod('ggplot_gtable') -} - -#' @export -ggplot_gtable.ggplot_built <- function(data) { - plot <- data$plot - layout <- data$layout - data <- data$data - theme <- plot$theme +S7::method(gtable_ggplot, class_ggplot_built) <- function(data) { + plot <- data@plot + layout <- data@layout + data <- data@data + theme <- plot@theme - geom_grobs <- by_layer(function(l, d) l$draw_geom(d, layout), plot$layers, data, "converting geom to grob") + geom_grobs <- by_layer(function(l, d) l$draw_geom(d, layout), plot@layers, data, "converting geom to grob") - plot_table <- layout$render(geom_grobs, data, theme, plot$labels) + plot_table <- layout$render(geom_grobs, data, theme, plot@labels) # Legends - legend_box <- plot$guides$assemble(theme) + legend_box <- plot@guides$assemble(theme) plot_table <- table_add_legends(plot_table, legend_box, theme) # Title title <- element_render( - theme, "plot.title", plot$labels$title, + theme, "plot.title", plot@labels$title, margin_y = TRUE, margin_x = TRUE ) title_height <- grobHeight(title) # Subtitle subtitle <- element_render( - theme, "plot.subtitle", plot$labels$subtitle, + theme, "plot.subtitle", plot@labels$subtitle, margin_y = TRUE, margin_x = TRUE ) subtitle_height <- grobHeight(subtitle) # whole plot annotation caption <- element_render( - theme, "plot.caption", plot$labels$caption, + theme, "plot.caption", plot@labels$caption, margin_y = TRUE, margin_x = TRUE ) caption_height <- grobHeight(caption) @@ -283,7 +292,7 @@ ggplot_gtable.ggplot_built <- function(data) { plot_table <- gtable_add_grob(plot_table, caption, name = "caption", t = -1, b = -1, l = caption_l, r = caption_r, clip = "off") - plot_table <- table_add_tag(plot_table, plot$labels$tag, theme) + plot_table <- table_add_tag(plot_table, plot@labels$tag, theme) # Margins plot_margin <- calc_element("plot.margin", theme) %||% margin() @@ -298,11 +307,23 @@ ggplot_gtable.ggplot_built <- function(data) { } # add alt-text as attribute - attr(plot_table, "alt-label") <- plot$labels$alt + attr(plot_table, "alt-label") <- plot@labels$alt plot_table } +# TODO: the S3 generic should be phased out once S7 is adopted more widely +#' @rdname gtable_ggplot +#' @export +ggplot_gtable <- function(plot) { + UseMethod("ggplot_gtable") +} + +#' @export +ggplot_gtable.default <- function(plot) { + gtable_ggplot(plot) +} + #' Generate a ggplot2 plot grob. #' #' @param x ggplot2 object @@ -312,11 +333,8 @@ ggplotGrob <- function(x) { ggplot_gtable(ggplot_build(x)) } -#' @export -as.gtable.ggplot <- function(x, ...) ggplotGrob(x) - -#' @export -as.gtable.ggplot_built <- function(x, ...) ggplot_gtable(x) +S7::method(as.gtable, class_ggplot) <- function(x, ...) ggplotGrob(x) +S7::method(as.gtable, class_ggplot_built) <- function(x, ...) ggplot_gtable(x) # Apply function to layer and matching data by_layer <- function(f, layers, data, step = NULL) { @@ -393,20 +411,20 @@ table_add_tag <- function(table, label, theme) { if (location %in% c("plot", "panel")) { if (!is.numeric(position)) { if (right || left) { - x <- (1 - element$hjust) * width + x <- (1 - element@hjust) * width if (right) { x <- unit(1, "npc") - x } } else { - x <- unit(element$hjust, "npc") + x <- unit(element@hjust, "npc") } if (top || bottom) { - y <- (1 - element$vjust) * height + y <- (1 - element@vjust) * height if (top) { y <- unit(1, "npc") - y } } else { - y <- unit(element$vjust, "npc") + y <- unit(element@vjust, "npc") } } else { x <- unit(position[1], "npc") diff --git a/R/plot-construction.R b/R/plot-construction.R index b10a9f4387..51f1ba1f17 100644 --- a/R/plot-construction.R +++ b/R/plot-construction.R @@ -24,8 +24,6 @@ #' @param e1 An object of class [ggplot()] or a [theme()]. #' @param e2 A plot component, as described below. #' @seealso [theme()] -#' @export -#' @method + gg #' @rdname gg-add #' @examples #' base <- @@ -39,7 +37,7 @@ #' # Alternatively, you can add multiple components with a list. #' # This can be useful to return from a function. #' base + list(subset(mpg, fl == "p"), geom_smooth()) -"+.gg" <- function(e1, e2) { +add_gg <- function(e1, e2) { if (missing(e2)) { cli::cli_abort(c( "Cannot use {.code +} with a single argument.", @@ -52,6 +50,7 @@ e2name <- deparse(substitute(e2)) if (is_theme(e1)) add_theme(e1, e2, e2name) + # The `add_ggplot()` branch here is for backward compatibility with R < 4.3.0 else if (is_ggplot(e1)) add_ggplot(e1, e2, e2name) else if (is_ggproto(e1)) { cli::cli_abort(c( @@ -61,10 +60,31 @@ } } +if (getRversion() < "4.3.0") { + S7::method(`+`, list(class_S3_gg, S7::class_any)) <- add_gg +} + +S7::method(`+`, list(class_ggplot, S7::class_any)) <- function(e1, e2) { + e2name <- deparse(substitute(e2, env = caller_env(2))) + add_ggplot(e1, e2, e2name) +} + +S7::method(`+`, list(class_theme, S7::class_any)) <- function(e1, e2) { + e2name <- deparse(substitute(e2, env = caller_env(2))) + add_theme(e1, e2, e2name) +} + #' @rdname gg-add #' @export -"%+%" <- `+.gg` +"%+%" <- function(e1, e2) { + if (getRversion() < "4.3.0") { + add_gg(e1, e2) + } else { + deprecate_soft0("4.0.0", I(" %+% x"), I(" + x")) + `+`(e1, e2) + } +} add_ggplot <- function(p, object, objectname) { if (is.null(object)) return(p) @@ -77,18 +97,18 @@ add_ggplot <- function(p, object, objectname) { #' Add custom objects to ggplot #' #' This generic allows you to add your own methods for adding custom objects to -#' a ggplot with [+.gg]. +#' a ggplot with [+.gg][add_gg]. The `ggplot_add()` function is vestigial and +#' the `update_ggplot()` function should be used instead. #' #' @param object An object to add to the plot #' @param plot The ggplot object to add `object` to -#' @param object_name The name of the object to add #' #' @return A modified ggplot object #' @details -#' Custom methods for `ggplot_add()` are intended to update the `plot` variable +#' Custom methods for `update_ggplot()` are intended to update the `plot` variable #' using information from a custom `object`. This can become convenient when #' writing extensions that don't build on the pre-existing grammar like -#' layers, facets, coords and themes. The `ggplot_add()` function is never +#' layers, facets, coords and themes. The `update_ggplot()` function is never #' intended to be used directly, but it is triggered when an object is added #' to a plot via the `+` operator. Please note that the full `plot` object is #' exposed at this point, which comes with the responsibility of returning @@ -98,10 +118,11 @@ add_ggplot <- function(p, object, objectname) { #' @export #' @examples #' # making a new method for the generic -#' # in this example, we apply a text element to the text theme setting -#' ggplot_add.element_text <- function(object, plot, object_name) { -#' plot + theme(text = object) -#' } +#' # in this example, we enable adding text elements +#' S7::method(update_ggplot, list(element_text, class_ggplot)) <- +#' function(object, plot, ...) { +#' plot + theme(text = object) +#' } #' #' # we can now use `+` to add our object to a plot #' ggplot(mpg, aes(displ, cty)) + @@ -109,96 +130,101 @@ add_ggplot <- function(p, object, objectname) { #' element_text(colour = "red") #' #' # clean-up -#' rm(ggplot_add.element_text) -ggplot_add <- function(object, plot, object_name) { - UseMethod("ggplot_add") -} -#' @export -ggplot_add.default <- function(object, plot, object_name) { - cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") -} -#' @export -ggplot_add.NULL <- function(object, plot, object_name) { - plot -} -#' @export -ggplot_add.data.frame <- function(object, plot, object_name) { - plot$data <- object - plot -} -#' @export -ggplot_add.function <- function(object, plot, object_name) { - cli::cli_abort(c( - "Can't add {.var {object_name}} to a {.cls ggplot} object", - "i" = "Did you forget to add parentheses, as in {.fn {object_name}}?" - )) -} -#' @export -ggplot_add.theme <- function(object, plot, object_name) { - plot$theme <- add_theme(plot$theme, object) - plot -} -#' @export -ggplot_add.Scale <- function(object, plot, object_name) { - plot$scales$add(object) - plot -} -#' @export -ggplot_add.labels <- function(object, plot, object_name) { - update_labels(plot, object) -} -#' @export -ggplot_add.Guides <- function(object, plot, object_name) { - if (is_guides(plot$guides)) { - # We clone the guides object to prevent modify-in-place of guides - old <- plot$guides +update_ggplot <- S7::new_generic("update_ggplot", c("object", "plot")) + +S7::method(update_ggplot, list(S7::class_any, class_ggplot)) <- + function(object, plot, object_name, ...) { + cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + } + +S7::method(update_ggplot, list(S7::class_function, class_ggplot)) <- + function(object, plot, object_name, ...) { + cli::cli_abort(c( + "Can't add {.var {object_name}} to a {.cls ggplot} object", + "i" = "Did you forget to add parentheses, as in {.fn {object_name}}?" + )) + } + +S7::method(update_ggplot, list(NULL, class_ggplot)) <- + function(object, plot, ...) { plot } + +S7::method(update_ggplot, list(S7::class_data.frame, class_ggplot)) <- + function(object, plot, ...) { S7::set_props(plot, data = object) } + +S7::method(update_ggplot, list(class_scale, class_ggplot)) <- + function(object, plot, ...) { + plot@scales$add(object) + plot + } + +S7::method(update_ggplot, list(class_labels, class_ggplot)) <- + function(object, plot, ...) { update_labels(plot, object) } + +S7::method(update_ggplot, list(class_guides, class_ggplot)) <- + function(object, plot, ...) { + old <- plot@guides new <- ggproto(NULL, old) new$add(object) - plot$guides <- new - } else { - plot$guides <- object + plot@guides <- new + plot } - plot -} -#' @export -ggplot_add.uneval <- function(object, plot, object_name) { - plot$mapping <- defaults(object, plot$mapping) - # defaults() doesn't copy class, so copy it. - class(plot$mapping) <- class(object) - plot -} -#' @export -ggplot_add.Coord <- function(object, plot, object_name) { - if (!isTRUE(plot$coordinates$default)) { - cli::cli_inform("Coordinate system already present. Adding new coordinate system, which will replace the existing one.") + +S7::method(update_ggplot, list(class_mapping, class_ggplot)) <- + function(object, plot, ...) { + S7::set_props(plot, mapping = class_mapping(defaults(object, plot@mapping))) } - plot$coordinates <- object - plot -} -#' @export -ggplot_add.Facet <- function(object, plot, object_name) { - plot$facet <- object - plot -} -#' @export -ggplot_add.list <- function(object, plot, object_name) { - for (o in object) { - plot <- ggplot_add(o, plot, object_name) +S7::method(update_ggplot, list(class_theme, class_ggplot)) <- + function(object, plot, ...) { + S7::set_props(plot, theme = add_theme(plot@theme, object)) } - plot -} + +S7::method(update_ggplot, list(class_coord, class_ggplot)) <- + function(object, plot, ...) { + if (!isTRUE(plot@coordinates$default)) { + cli::cli_inform(c( + "Coordinate system already present.", + i = "Adding new coordinate system, which will replace the existing one." + )) + } + S7::set_props(plot, coordinates = object) + } + +S7::method(update_ggplot, list(class_facet, class_ggplot)) <- + function(object, plot, ...) { S7::set_props(plot, facet = object) } + +S7::method(update_ggplot, list(class_layer, class_ggplot)) <- + function(object, plot, ...) { + layers_names <- new_layer_names(object, names2(plot@layers)) + object <- setNames(append(plot@layers, object), layers_names) + S7::set_props(plot, layers = object) + } + +S7::method(update_ggplot, list(S7::class_list, class_ggplot)) <- + function(object, plot, object_name, ...) { + for (o in object) { + plot <- ggplot_add(o, plot, object_name) + } + plot + } + +S7::method(update_ggplot, list(S7::new_S3_class("by"), class_ggplot)) <- + function(object, plot, object_name, ...) { + ggplot_add(unclass(object), plot, object_name) + } + +# TODO: the S3 generic should be phased out once S7 is adopted more widely +# For backward compatibility, ggplot_add still exists but by default it wraps +# `update_ggplot()` +#' @rdname update_ggplot #' @export -ggplot_add.by <- function(object, plot, object_name) { - ggplot_add.list(object, plot, object_name) +ggplot_add <- function(object, plot, ...) { + UseMethod("ggplot_add") } #' @export -ggplot_add.Layer <- function(object, plot, object_name) { - layers_names <- new_layer_names(object, names2(plot$layers)) - plot$layers <- append(plot$layers, object) - names(plot$layers) <- layers_names - plot +ggplot_add.default <- function(object, plot, ...) { + update_ggplot(object = object, plot = plot, ...) } new_layer_names <- function(layer, existing) { diff --git a/R/plot.R b/R/plot.R index 5f38f63116..fc262c1b69 100644 --- a/R/plot.R +++ b/R/plot.R @@ -103,55 +103,53 @@ #' mapping = aes(x = group, y = group_mean), data = group_means_df, #' colour = 'red', size = 3 #' ) -ggplot <- function(data = NULL, mapping = aes(), ..., - environment = parent.frame()) { - UseMethod("ggplot") -} +ggplot <- S7::new_generic( + "ggplot2", "data", + fun = function(data, mapping = aes(), ..., environment = parent.frame()) { + force(mapping) + S7::S7_dispatch() + } +) -#' @export -ggplot.default <- function(data = NULL, mapping = aes(), ..., - environment = parent.frame()) { +S7::method(ggplot, S7::class_any) <- function( + data, mapping = aes(), ..., + environment = parent.frame()) { if (!missing(mapping) && !is_mapping(mapping)) { cli::cli_abort(c( "{.arg mapping} must be created with {.fn aes}.", "x" = "You've supplied {.obj_type_friendly {mapping}}." )) } + if (missing(data)) { + data <- NULL + } data <- fortify(data, ...) - p <- structure(list( + p <- class_ggplot( data = data, - layers = list(), - scales = scales_list(), - guides = guides_list(), mapping = mapping, - theme = list(), - coordinates = coord_cartesian(default = TRUE), - facet = facet_null(), - plot_env = environment, - layout = ggproto(NULL, Layout), - labels = list() - ), class = c("gg", "ggplot")) + plot_env = environment + ) + class(p) <- union("ggplot", class(p)) set_last_plot(p) p } -#' @export -ggplot.function <- function(data = NULL, mapping = aes(), ..., - environment = parent.frame()) { - # Added to avoid functions end in ggplot.default - cli::cli_abort(c( - "{.arg data} cannot be a function.", - "i" = "Have you misspelled the {.arg data} argument in {.fn ggplot}" - )) -} +S7::method(ggplot, S7::class_function) <- + function(data, mapping = aes(), ..., + environment = parent.frame()) { + # Added to avoid functions end in ggplot.default + cli::cli_abort(c( + "{.arg data} cannot be a function.", + "i" = "Have you misspelled the {.arg data} argument in {.fn ggplot}" + )) + } plot_clone <- function(plot) { p <- plot - p$scales <- plot$scales$clone() - + p@scales <- plot@scales$clone() p } @@ -160,7 +158,7 @@ plot_clone <- function(plot) { #' @keywords internal #' @export #' @name is_tests -is_ggplot <- function(x) inherits(x, "ggplot") +is_ggplot <- function(x) S7::S7_inherits(x, class_ggplot) #' @export #' @rdname is_tests @@ -184,7 +182,9 @@ is.ggplot <- function(x) { #' @keywords hplot #' @return Invisibly returns the original plot. #' @export -#' @method print ggplot +#' @method print ggplot2::ggplot +#' @name print.ggplot +#' @aliases print.ggplot2::ggplot plot.ggplot2::ggplot #' @examples #' colours <- c("class", "drv", "fl") #' @@ -198,7 +198,8 @@ is.ggplot <- function(x) { #' print(ggplot(mpg, aes(displ, hwy, colour = .data[[colour]])) + #' geom_point()) #' } -print.ggplot <- function(x, newpage = is.null(vp), vp = NULL, ...) { +# TODO: should convert to proper S7 method once bug in S7 is resolved +`print.ggplot2::ggplot` <- function(x, newpage = is.null(vp), vp = NULL, ...) { set_last_plot(x) if (newpage) grid.newpage() @@ -227,7 +228,58 @@ print.ggplot <- function(x, newpage = is.null(vp), vp = NULL, ...) { invisible(x) } -#' @rdname print.ggplot -#' @method plot ggplot + +S7::method(plot, class_ggplot) <- `print.ggplot2::ggplot` + +# The following extractors and subassignment operators are for a smooth +# transition and should be deprecated in the release cycle after 4.0.0 +# TODO: should convert to proper S7 method once bug in S7 is resolved + +#' @export +`$.ggplot2::gg` <- function(x, i) { + if (!S7::prop_exists(x, i) && S7::prop_exists(x, "meta")) { + # This is a trick to bridge a gap between S3 and S7. We're allowing + # for arbitrary fields by reading/writing to the 'meta' field when the + # index does not point to an actual property. + # The proper way to go about this is to implement new fields as properties + # of a ggplot subclass. + S7::prop(x, "meta")[[i]] + } else { + `[[`(S7::props(x), i) + } +} + +#' @export +`$<-.ggplot2::gg` <- function(x, i, value) { + if (!S7::prop_exists(x, i) && S7::prop_exists(x, "meta")) { + # See explanation in `$.ggplot2::gg` + S7::prop(x, "meta")[[i]] <- value + } else { + S7::props(x) <- `[[<-`(S7::props(x), i, value) + } + x +} + +#' @export +`[.ggplot2::gg` <- function(x, i) { + `[`(S7::props(x), i) +} + #' @export -plot.ggplot <- print.ggplot +`[<-.ggplot2::gg` <- function(x, i, value) { + S7::props(x) <- `[<-`(S7::props(x), i, value) + x +} + +#' @export +`[[.ggplot2::gg` <- function(x, i) { + `[[`(S7::props(x), i) +} + +#' @export +`[[<-.ggplot2::gg` <- function(x, i, value) { + S7::props(x) <- `[[<-`(S7::props(x), i, value) + x +} + + diff --git a/R/properties.R b/R/properties.R new file mode 100644 index 0000000000..493d787f05 --- /dev/null +++ b/R/properties.R @@ -0,0 +1,45 @@ +property_boolean <- function(allow_null = FALSE, default = TRUE) { + class <- S7::class_logical + class <- if (allow_null) S7::new_union(class, NULL) else class + validator <- function(value) { + if ((allow_null && is.null(value)) || is_bool(value)) { + return(character()) + } + "must be a boolean" + } + S7::new_property( + class = class, + validator = validator, + default = default + ) +} + +property_choice <- function(options, allow_null = FALSE, default = NULL) { + force(options) + class <- S7::class_character + class <- if (allow_null) S7::new_union(class, NULL) else class + validator <- function(value) { + if (allow_null && is.null(value)) { + return(character()) + } + if (!is_string(value)) { + return(as_cli("must be a string, not {.obj_type_friendly {value}}")) + } + if (value %in% options) { + return(character()) + } + as_cli("must be one of {.or {.val {options}}}") + } + S7::new_property( + class = class, + validator = validator, + default = default + ) +} + +property_nullable <- function(class = S7::class_any, ...) { + S7::new_property( + class = S7::new_union(NULL, class), + ... + ) +} diff --git a/R/quick-plot.R b/R/quick-plot.R index 4dfa478be3..61e983843b 100644 --- a/R/quick-plot.R +++ b/R/quick-plot.R @@ -78,7 +78,7 @@ qplot <- function(x, y, ..., data, facets = NULL, margins = FALSE, is_constant <- (!names(exprs) %in% ggplot_global$all_aesthetics) | vapply(exprs, quo_is_call, logical(1), name = "I") - mapping <- new_aes(exprs[!is_missing & !is_constant], env = parent.frame()) + mapping <- class_mapping(exprs[!is_missing & !is_constant], env = parent.frame()) consts <- exprs[is_constant] diff --git a/R/save.R b/R/save.R index 2f2faec357..b4b1cc7226 100644 --- a/R/save.R +++ b/R/save.R @@ -244,7 +244,8 @@ get_plot_background <- function(plot, bg = NULL, default = "transparent") { if (!is_ggplot(plot)) { return(default) } - calc_element("plot.background", plot_theme(plot))$fill %||% default + bg <- calc_element("plot.background", plot_theme(plot)) + try_prop(bg, "fill") %||% "transparent" } validate_device <- function(device, filename = NULL, dpi = 300, call = caller_env()) { @@ -325,10 +326,7 @@ validate_device <- function(device, filename = NULL, dpi = 300, call = caller_en dev } -#' @export -grid.draw.ggplot <- function(x, recording = TRUE) { - print(x) -} +S7::method(grid.draw, class_ggplot) <- function(x, recording = TRUE) print(x) absorb_grdevice_args <- function(f) { function(..., type, antialias) { diff --git a/R/summarise-plot.R b/R/summarise-plot.R index 64d16ca7b2..87b8927777 100644 --- a/R/summarise-plot.R +++ b/R/summarise-plot.R @@ -62,8 +62,8 @@ NULL #' @rdname summarise_plot #' @export summarise_layout <- function(p) { - check_inherits(p, "ggplot_built") - l <- p$layout + check_inherits(p, "ggplot2::ggplot_built") + l <- p@layout layout <- l$layout layout <- data_frame0( @@ -99,7 +99,7 @@ summarise_layout <- function(p) { #' @rdname summarise_plot #' @export summarise_coord <- function(p) { - check_inherits(p, "ggplot_built") + check_inherits(p, "ggplot2::ggplot_built") # Given a transform object, find the log base; if the transform object is # NULL, or if it's not a log transform, return NA. @@ -112,9 +112,9 @@ summarise_coord <- function(p) { } list( - xlog = trans_get_log_base(p$layout$coord$trans$x), - ylog = trans_get_log_base(p$layout$coord$trans$y), - flip = inherits(p$layout$coord, "CoordFlip") + xlog = trans_get_log_base(p@layout$coord$trans$x), + ylog = trans_get_log_base(p@layout$coord$trans$y), + flip = inherits(p@layout$coord, "CoordFlip") ) } @@ -122,13 +122,13 @@ summarise_coord <- function(p) { #' @rdname summarise_plot #' @export summarise_layers <- function(p) { - check_inherits(p, "ggplot_built") + check_inherits(p, "ggplot2::ggplot_built") - # Default mappings. Make sure it's a regular list instead of an uneval + # Default mappings. Make sure it's a regular list instead of a mapping # object. - default_mapping <- unclass(p$plot$mapping) + default_mapping <- unclass(p@plot@mapping) - layer_mappings <- lapply(p$plot$layers, function(layer) { + layer_mappings <- lapply(p@plot@layers, function(layer) { defaults(layer$mapping, default_mapping) }) diff --git a/R/summary.R b/R/summary.R index 4a227a3599..8c3d252906 100644 --- a/R/summary.R +++ b/R/summary.R @@ -1,41 +1,43 @@ #' Displays a useful description of a ggplot object #' +#' @noRd #' @param object ggplot2 object to summarise #' @param ... other arguments ignored (for compatibility with generic) #' @keywords internal -#' @method summary ggplot -#' @export +#' @name summary.ggplot +#' @aliases summary.ggplot summary.ggplot2::ggplot +#' @usage summary(object, ...) #' @examples #' p <- ggplot(mtcars, aes(mpg, wt)) + #' geom_point() #' summary(p) -summary.ggplot <- function(object, ...) { +S7::method(summary, class_ggplot) <- function(object, ...) { wrap <- function(x) paste( paste(strwrap(x, exdent = 2), collapse = "\n"), "\n", sep = "" ) - if (!is.null(object$data)) { + if (!is.null(object@data)) { output <- paste( - "data: ", paste(names(object$data), collapse = ", "), - " [", nrow(object$data), "x", ncol(object$data), "] ", + "data: ", paste(names(object@data), collapse = ", "), + " [", nrow(object@data), "x", ncol(object@data), "] ", "\n", sep = "") cat(wrap(output)) } - if (length(object$mapping) > 0) { - cat("mapping: ", clist(object$mapping), "\n", sep = "") + if (length(object@mapping) > 0) { + cat("mapping: ", clist(object@mapping), "\n", sep = "") } - if (object$scales$n() > 0) { - cat("scales: ", paste(object$scales$input(), collapse = ", "), "\n") + if (object@scales$n() > 0) { + cat("scales: ", paste(object@scales$input(), collapse = ", "), "\n") } - vars <- object$facet$vars() + vars <- object@facet$vars() vars <- if (length(vars) > 0) paste0("~", vars) else "" cat("faceting: ", paste0(vars, collapse = ", "), "\n") - if (length(object$layers) > 0) + if (length(object@layers) > 0) cat("-----------------------------------\n") - invisible(lapply(object$layers, function(x) { + invisible(lapply(object@layers, function(x) { print(x) cat("\n") })) diff --git a/R/theme-current.R b/R/theme-current.R index c6848c7d76..e42f8c1e68 100644 --- a/R/theme-current.R +++ b/R/theme-current.R @@ -40,7 +40,7 @@ NULL #' @return `set_theme()`, `update_theme()`, and `replace_theme()` #' invisibly return the previous theme so you can easily save it, then #' later restore it. -#' @seealso [+.gg()] +#' @seealso [add_gg()] #' @export #' @examples #' p <- ggplot(mtcars, aes(mpg, wt)) + diff --git a/R/theme-defaults.R b/R/theme-defaults.R index 78946d028e..c46b09cffc 100644 --- a/R/theme-defaults.R +++ b/R/theme-defaults.R @@ -127,11 +127,12 @@ theme_grey <- function(base_size = 11, base_family = "", # by others line = element_line( colour = ink, linewidth = base_line_size, - linetype = 1, lineend = "butt" + linetype = 1, lineend = "butt", linejoin = "round" ), rect = element_rect( fill = paper, colour = ink, - linewidth = base_rect_size, linetype = 1 + linewidth = base_rect_size, linetype = 1, + linejoin = "round" ), text = element_text( family = base_family, face = "plain", @@ -153,7 +154,7 @@ theme_grey <- function(base_size = 11, base_family = "", polygon = element_polygon( fill = paper, colour = ink, - linewidth = base_rect_size, linetype = 1 + linewidth = base_rect_size, linetype = 1, linejoin = "round" ), geom = element_geom( @@ -525,7 +526,7 @@ theme_void <- function(base_size = 11, base_family = "", line = element_blank(), rect = element_rect( fill = paper, colour = NA, linewidth = 0, linetype = 1, - inherit.blank = FALSE + inherit.blank = FALSE, linejoin = "round" ), polygon = element_blank(), point = element_blank(), @@ -621,11 +622,11 @@ theme_test <- function(base_size = 11, base_family = "", t <- theme( line = element_line( colour = ink, linewidth = base_line_size, - linetype = 1, lineend = "butt" + linetype = 1, lineend = "butt", linejoin = "round" ), rect = element_rect( fill = paper, colour = ink, - linewidth = base_rect_size, linetype = 1 + linewidth = base_rect_size, linetype = 1, linejoin = "round" ), text = element_text( family = base_family, face = "plain", @@ -640,7 +641,7 @@ theme_test <- function(base_size = 11, base_family = "", ), polygon = element_polygon( fill = paper, colour = ink, - linewidth = base_rect_size, linetype = 1 + linewidth = base_rect_size, linetype = 1, linejoin = "round" ), title = element_text(family = header_family), spacing = unit(half_line, "pt"), diff --git a/R/theme-elements.R b/R/theme-elements.R index 887168f045..03d58d361c 100644 --- a/R/theme-elements.R +++ b/R/theme-elements.R @@ -81,55 +81,97 @@ NULL #' @export #' @rdname element -element_blank <- function() { - structure( - list(), - class = c("element_blank", "element") - ) -} +element <- S7::new_class("element", abstract = TRUE) #' @export #' @rdname element -element_rect <- function(fill = NULL, colour = NULL, linewidth = NULL, - linetype = NULL, color = NULL, inherit.blank = FALSE, size = deprecated()) { +element_blank <- S7::new_class("element_blank", parent = element) + +# All properties are listed here so they can easily be recycled in the different +# element classes +#' @include properties.R +#' @include margins.R +element_props <- list( + fill = property_nullable(S7::class_character | S7::new_S3_class("GridPattern") | S7::class_logical), + colour = property_nullable(S7::class_character | S7::class_logical), + family = property_nullable(S7::class_character), + hjust = property_nullable(S7::class_numeric), + vjust = property_nullable(S7::class_numeric), + angle = property_nullable(S7::class_numeric), + size = property_nullable(S7::class_numeric), + lineheight = property_nullable(S7::class_numeric), + margin = property_nullable(margin), + face = property_choice(c("plain", "bold", "italic", "oblique", "bold.italic"), allow_null = TRUE), + linewidth = property_nullable(S7::class_numeric), + linetype = property_nullable(S7::class_numeric | S7::class_character), + lineend = property_choice(c("round", "butt", "square"), allow_null = TRUE), + linejoin = property_choice(c("round", "mitre", "bevel"), allow_null = TRUE), + shape = property_nullable(S7::class_numeric | S7::class_character), + arrow = property_nullable(S7::new_S3_class("arrow") | S7::class_logical), + arrow.fill = property_nullable(S7::class_character | S7::class_logical), + debug = property_boolean(allow_null = TRUE, default = NULL), + inherit.blank = property_boolean(default = FALSE), + # These are reserved for future use + italic = property_nullable(S7::class_character), + fontweight = property_nullable(S7::class_numeric), + fontwidth = property_nullable(S7::class_numeric | S7::class_character) +) - if (lifecycle::is_present(size)) { - deprecate_warn0("3.4.0", "element_rect(size)", "element_rect(linewidth)") - linewidth <- size +#' @export +#' @rdname element +element_rect <- S7::new_class( + "element_rect", parent = element, + properties = element_props[c("fill", "colour", + "linewidth", "linetype", "linejoin", + "inherit.blank")], + constructor = function(fill = NULL, colour = NULL, linewidth = NULL, + linetype = NULL, color = NULL, linejoin = NULL, + inherit.blank = FALSE, size = deprecated()){ + if (lifecycle::is_present(size)) { + deprecate_warn0("3.4.0", "element_rect(size)", "element_rect(linewidth)") + linewidth <- size + } + S7::new_object( + S7::S7_object(), + fill = fill, colour = color %||% colour, + linewidth = linewidth, linetype = linetype, linejoin = linejoin, + inherit.blank = inherit.blank + ) } - - if (!is.null(color)) colour <- color - structure( - list(fill = fill, colour = colour, linewidth = linewidth, linetype = linetype, - inherit.blank = inherit.blank), - class = c("element_rect", "element") - ) -} +) #' @export #' @rdname element -#' @param lineend Line end Line end style (round, butt, square) +#' @param linejoin Line join style, one of `"round"`, `"mitre"` or `"bevel"`. +#' @param lineend Line end style, one of `"round"`, `"butt"` or `"square"`. #' @param arrow Arrow specification, as created by [grid::arrow()] -element_line <- function(colour = NULL, linewidth = NULL, linetype = NULL, - lineend = NULL, color = NULL, arrow = NULL, arrow.fill = NULL, - inherit.blank = FALSE, size = deprecated()) { - - if (lifecycle::is_present(size)) { - deprecate_warn0("3.4.0", "element_line(size)", "element_line(linewidth)") - linewidth <- size +element_line <- S7::new_class( + "element_line", parent = element, + properties = element_props[c( + "colour", "linewidth", "linetype", "lineend", "linejoin", + "arrow", "arrow.fill", + "inherit.blank" + )], + constructor = function(colour = NULL, linewidth = NULL, linetype = NULL, + lineend = NULL, color = NULL, linejoin = NULL, + arrow = NULL, arrow.fill = NULL, + inherit.blank = FALSE, size = deprecated()) { + if (lifecycle::is_present(size)) { + deprecate_warn0("3.4.0", "element_line(size)", "element_line(linewidth)") + linewidth <- size + } + colour <- color %||% colour + S7::new_object( + S7::S7_object(), + colour = colour, + linewidth = linewidth, linetype = linetype, lineend = lineend, + linejoin = linejoin, + arrow = arrow %||% FALSE, + arrow.fill = arrow.fill %||% colour, + inherit.blank = inherit.blank + ) } - - colour <- color %||% colour - arrow.fill <- arrow.fill %||% colour - arrow <- arrow %||% FALSE - - structure( - list(colour = colour, linewidth = linewidth, linetype = linetype, lineend = lineend, - arrow = arrow, arrow.fill = arrow.fill, inherit.blank = inherit.blank), - class = c("element_line", "element") - ) -} - +) #' @param family The typeface to use. The validity of this value will depend on #' the graphics device being used for rendering the plot. See @@ -152,97 +194,123 @@ element_line <- function(colour = NULL, linewidth = NULL, linetype = NULL, #' is anchored. #' @export #' @rdname element -element_text <- function(family = NULL, face = NULL, colour = NULL, - size = NULL, hjust = NULL, vjust = NULL, angle = NULL, lineheight = NULL, - color = NULL, margin = NULL, debug = NULL, inherit.blank = FALSE) { - - if (!is.null(color)) colour <- color - - n <- max( - length(family), length(face), length(colour), length(size), - length(hjust), length(vjust), length(angle), length(lineheight) - ) - if (n > 1) { - cli::cli_warn(c( - "Vectorized input to {.fn element_text} is not officially supported.", - "i" = "Results may be unexpected or may change in future versions of ggplot2." - )) - } - - - structure( - list(family = family, face = face, colour = colour, size = size, +element_text <- S7::new_class( + "element_text", parent = element, + properties = element_props[c( + "family", "face", "italic", "fontweight", "fontwidth", + "colour", "size", "hjust", "vjust", "angle", "lineheight", + "margin", "debug", "inherit.blank" + )], + constructor = function(family = NULL, face = NULL, colour = NULL, + size = NULL, hjust = NULL, vjust = NULL, angle = NULL, + lineheight = NULL, color = NULL, margin = NULL, + debug = NULL, inherit.blank = FALSE) { + n <- max( + length(family), length(face), length(colour), length(size), + length(hjust), length(vjust), length(angle), length(lineheight) + ) + if (n > 1) { + cli::cli_warn(c( + "Vectorized input to {.fn element_text} is not officially supported.", + "i" = "Results may be unexpected or may change in future versions of ggplot2." + )) + } + + colour <- color %||% colour + S7::new_object( + S7::S7_object(), + family = family, face = face, colour = colour, size = size, hjust = hjust, vjust = vjust, angle = angle, lineheight = lineheight, - margin = margin, debug = debug, inherit.blank = inherit.blank), - class = c("element_text", "element") - ) -} + margin = margin, debug = debug, inherit.blank = inherit.blank, + italic = NA_character_, fontweight = NA_real_, fontwidth = NA_real_ + ) + } +) #' @export #' @rdname element -element_polygon <- function(fill = NULL, colour = NULL, linewidth = NULL, - linetype = NULL, color = NULL, - inherit.blank = FALSE) { - structure( - list( +element_polygon <- S7::new_class( + "element_polygon", parent = element, + properties = element_props[c( + "fill", "colour", "linewidth", "linetype", "linejoin", "inherit.blank" + )], + constructor = function(fill = NULL, colour = NULL, linewidth = NULL, + linetype = NULL, color = NULL, linejoin = NULL, + inherit.blank = FALSE) { + colour <- color %||% colour + S7::new_object( + S7::S7_object(), fill = fill, colour = color %||% colour, linewidth = linewidth, - linetype = linetype, inherit.blank = inherit.blank - ), - class = c("element_polygon", "element") - ) -} + linetype = linetype, linejoin = linejoin, inherit.blank = inherit.blank + ) + } +) #' @export #' @rdname element -element_point <- function(colour = NULL, shape = NULL, size = NULL, fill = NULL, - stroke = NULL, color = NULL, inherit.blank = FALSE) { - structure( - list( +element_point <- S7::new_class( + "element_point", parent = element, + properties = rename( + element_props[c( + "colour", "shape", "size", "fill", "linewidth", "inherit.blank" + )], + c("linewidth" = "stroke") + ), + constructor = function(colour = NULL, shape = NULL, size = NULL, fill = NULL, + stroke = NULL, color = NULL, inherit.blank = FALSE) { + S7::new_object( + S7::S7_object(), colour = color %||% colour, fill = fill, shape = shape, size = size, stroke = stroke, inherit.blank = inherit.blank - ), - class = c("element_point", "element") - ) -} + ) + } +) #' @param ink Foreground colour. #' @param paper Background colour. #' @param accent Accent colour. #' @export #' @rdname element -element_geom <- function( - # colours - ink = NULL, paper = NULL, accent = NULL, - # linewidth - linewidth = NULL, borderwidth = NULL, - # linetype - linetype = NULL, bordertype = NULL, - # text - family = NULL, fontsize = NULL, - # points - pointsize = NULL, pointshape = NULL, - - colour = NULL, color = NULL, fill = NULL) { - - if (!is.null(fontsize)) { - fontsize <- fontsize / .pt - } - - structure( - list( - ink = ink, - paper = paper, - accent = accent, +element_geom <- S7::new_class( + "element_geom", parent = element, + properties = list( + ink = element_props$colour, + paper = element_props$colour, + accent = element_props$colour, + linewidth = element_props$linewidth, + borderwidth = element_props$linewidth, + linetype = element_props$linetype, + bordertype = element_props$linetype, + family = element_props$family, + fontsize = element_props$size, + pointsize = element_props$size, + pointshape = element_props$shape, + colour = element_props$colour, + fill = element_props$fill + ), + constructor = function( + ink = NULL, paper = NULL, accent = NULL, + linewidth = NULL, borderwidth = NULL, + linetype = NULL, bordertype = NULL, + family = NULL, fontsize = NULL, + pointsize = NULL, pointshape = NULL, + colour = NULL, color = NULL, fill = NULL) { + + if (!is.null(fontsize)) { + fontsize <- fontsize / .pt + } + + S7::new_object( + S7::S7_object(), + ink = ink, paper = paper, accent = accent, linewidth = linewidth, borderwidth = borderwidth, linetype = linetype, bordertype = bordertype, family = family, fontsize = fontsize, pointsize = pointsize, pointshape = pointshape, - colour = color %||% colour, - fill = fill - ), - class = c("element_geom", "element") - ) -} + colour = color %||% colour, fill = fill + ) + } +) .default_geom_element <- element_geom( ink = "black", paper = "white", accent = "#3366FF", @@ -276,6 +344,24 @@ is_theme_element <- function(x, type = "any") { #' @export print.element <- function(x, ...) utils::str(x) +#' @export +#' @param type For testing elements: the type of element to expect. One of +#' `"blank"`, `"rect"`, `"line"`, `"text"`, `"polygon"`, `"point"` or `"geom"`. +#' @rdname is_tests +is_theme_element <- function(x, type = "any") { + switch( + type %||% "any", + any = S7::S7_inherits(x, element), + blank = S7::S7_inherits(x, element_blank), + rect = S7::S7_inherits(x, element_rect), + line = S7::S7_inherits(x, element_line), + text = S7::S7_inherits(x, element_text), + polygon = S7::S7_inherits(x, element_polygon), + point = S7::S7_inherits(x, element_point), + geom = S7::S7_inherits(x, element_geom), + FALSE + ) +} #' @param x A single number specifying size relative to parent element. #' @rdname element @@ -284,6 +370,45 @@ rel <- function(x) { structure(x, class = "rel") } +#' @export +`$.ggplot2::element` <- function(x, i) { + # deprecate_soft0("4.1.0", I("`$i`"), I("`@i`")) + `[[`(S7::props(x), i) +} + +#' @export +`[.ggplot2::element` <- function(x, i) { + # deprecate_soft0("4.1.0", I("`[i]`"), I("`S7::props(, i)`")) + `[`(S7::props(x), i) +} + +#' @export +`[[.ggplot2::element` <- function(x, i) { + # deprecate_soft0("4.1.0", I("`[[i]]`"), I("`S7::prop(, i)`")) + `[[`(S7::props(x), i) +} + +#' @export +`$<-.ggplot2::element` <- function(x, i, value) { + # deprecate_soft0("4.1.0", I("`$i <- value`"), I("`@i <- value`")) + S7::props(x) <- `[[<-`(S7::props(x), i, value) + x +} + +#' @export +`[<-.ggplot2::element` <- function(x, i, value) { + # deprecate_soft0("4.1.0", I("`[i] <- value`"), I("`S7::props()[i] <- value`")) + S7::props(x) <- `[<-`(S7::props(x), i, value) + x +} + +#' @export +`[[<-.ggplot2::element` <- function(x, i, value) { + # deprecate_soft0("4.1.0", I("`[[i]] <- value`"), I("S7::prop(, i) <- value")) + S7::props(x) <- `[[<-`(S7::props(x), i, value) + x +} + #' @export print.rel <- function(x, ...) print(noquote(paste(x, " *", sep = ""))) @@ -317,138 +442,150 @@ element_render <- function(theme, element, ..., name = NULL) { #' Generate grid grob from theme element #' +#' The `element_grob()` function is vestigial and `draw_element()` should +#' be used instead. +#' #' @param element Theme element, i.e. `element_rect` or similar. #' @param ... Other arguments to control specific of rendering. This is #' usually at least position. See the source code for individual methods. #' @keywords internal #' @export -element_grob <- function(element, ...) { - UseMethod("element_grob") -} +draw_element <- S7::new_generic("draw_element", "element") -#' @export -element_grob.element_blank <- function(element, ...) zeroGrob() +S7::method(draw_element, element_blank) <- function(element, ...) zeroGrob() -#' @export -element_grob.element_rect <- function(element, x = 0.5, y = 0.5, - width = 1, height = 1, - fill = NULL, colour = NULL, linewidth = NULL, linetype = NULL, ..., size = deprecated()) { +S7::method(draw_element, element_rect) <- + function(element, x = 0.5, y = 0.5, width = 1, height = 1, + fill = NULL, colour = NULL, + linewidth = NULL, linetype = NULL, linejoin = NULL, + ..., size = deprecated()) { - if (lifecycle::is_present(size)) { - deprecate_warn0("3.4.0", "element_grob.element_rect(size)", "element_grob.element_rect(linewidth)") - linewidth <- size - } + if (lifecycle::is_present(size)) { + deprecate_warn0("3.4.0", "element_grob.element_rect(size)", "element_grob.element_rect(linewidth)") + linewidth <- size + } - # The gp settings can override element_gp - gp <- gg_par(lwd = linewidth, col = colour, fill = fill, lty = linetype) - element_gp <- gg_par(lwd = element$linewidth, col = element$colour, - fill = element$fill, lty = element$linetype) - - rectGrob(x, y, width, height, gp = modify_list(element_gp, gp), ...) -} + gp <- gg_par(lwd = linewidth, col = colour, fill = fill, lty = linetype, linejoin = linejoin) + element_gp <- gg_par(lwd = element@linewidth, col = element@colour, + fill = element@fill, lty = element@linetype, + linejoin = element@linejoin) + rectGrob(x, y, width, height, gp = modify_list(element_gp, gp), ...) + } -#' @export -element_grob.element_text <- function(element, label = "", x = NULL, y = NULL, - family = NULL, face = NULL, colour = NULL, size = NULL, - hjust = NULL, vjust = NULL, angle = NULL, lineheight = NULL, - margin = NULL, margin_x = FALSE, margin_y = FALSE, ...) { +S7::method(draw_element, element_text) <- + function(element, label = "", x = NULL, y = NULL, + family = NULL, face = NULL, colour = NULL, size = NULL, + hjust = NULL, vjust = NULL, angle = NULL, lineheight = NULL, + margin = NULL, margin_x = FALSE, margin_y = FALSE, ...) { - if (is.null(label)) - return(zeroGrob()) + if (is.null(label)) + return(zeroGrob()) - vj <- vjust %||% element$vjust - hj <- hjust %||% element$hjust - margin <- margin %||% element$margin + vj <- vjust %||% element@vjust + hj <- hjust %||% element@hjust + margin <- margin %||% element@margin - angle <- angle %||% element$angle %||% 0 + angle <- angle %||% element@angle %||% 0 - # The gp settings can override element_gp - gp <- gg_par(fontsize = size, col = colour, - fontfamily = family, fontface = face, - lineheight = lineheight) - element_gp <- gg_par(fontsize = element$size, col = element$colour, - fontfamily = element$family, fontface = element$face, - lineheight = element$lineheight) - - titleGrob(label, x, y, hjust = hj, vjust = vj, angle = angle, - gp = modify_list(element_gp, gp), margin = margin, - margin_x = margin_x, margin_y = margin_y, debug = element$debug, ...) -} + # The gp settings can override element_gp + gp <- gg_par(fontsize = size, col = colour, + fontfamily = family, fontface = face, + lineheight = lineheight) + element_gp <- gg_par(fontsize = element@size, col = element@colour, + fontfamily = element@family, fontface = element@face, + lineheight = element@lineheight) + titleGrob(label, x, y, hjust = hj, vjust = vj, angle = angle, + gp = modify_list(element_gp, gp), margin = margin, + margin_x = margin_x, margin_y = margin_y, debug = element@debug, ...) + } +S7::method(draw_element, element_line) <- + function(element, x = 0:1, y = 0:1, + colour = NULL, linewidth = NULL, linetype = NULL, lineend = NULL, + linejoin = NULL, arrow.fill = NULL, + default.units = "npc", id.lengths = NULL, ..., size = deprecated()) { + + if (lifecycle::is_present(size)) { + deprecate_warn0("3.4.0", "element_grob.element_line(size)", "element_grob.element_line(linewidth)") + linewidth <- size + } + + arrow <- if (is.logical(element@arrow) && !element@arrow) { + NULL + } else { + element@arrow + } + if (is.null(arrow)) { + arrow.fill <- colour + element@arrow.fill <- element@colour + } + + # The gp settings can override element_gp + gp <- gg_par( + col = colour, fill = arrow.fill %||% colour, + lwd = linewidth, lty = linetype, lineend = lineend, linejoin = linejoin + ) + element_gp <- gg_par( + col = element@colour, fill = element@arrow.fill %||% element@colour, + lwd = element@linewidth, lty = element@linetype, + lineend = element@lineend, linejoin = element@linejoin + ) -#' @export -element_grob.element_line <- function(element, x = 0:1, y = 0:1, - colour = NULL, linewidth = NULL, linetype = NULL, lineend = NULL, - arrow.fill = NULL, - default.units = "npc", id.lengths = NULL, ..., size = deprecated()) { - - if (lifecycle::is_present(size)) { - deprecate_warn0("3.4.0", "element_grob.element_line(size)", "element_grob.element_line(linewidth)") - linewidth <- size + polylineGrob( + x, y, default.units = default.units, + gp = modify_list(element_gp, gp), + id.lengths = id.lengths, arrow = arrow, ... + ) } - arrow <- if (is.logical(element[["arrow"]]) && !element[["arrow"]]) { - NULL - } else { - element[["arrow"]] - } - if (is.null(arrow)) { - arrow.fill <- colour - element$arrow.fill <- element$colour +S7::method(draw_element, element_polygon) <- + function(element, x = c(0, 0.5, 1, 0.5), + y = c(0.5, 1, 0.5, 0), fill = NULL, + colour = NULL, linewidth = NULL, + linetype = NULL, linejoin = NULL, ..., + id = NULL, id.lengths = NULL, + pathId = NULL, pathId.lengths = NULL) { + + gp <- gg_par(lwd = linewidth, col = colour, fill = fill, + lty = linetype, linejoin = linejoin) + element_gp <- gg_par(lwd = element@linewidth, col = element@colour, + fill = element@fill, lty = element@linetype, + linejoin = element@linejoin) + pathGrob( + x = x, y = y, gp = modify_list(element_gp, gp), ..., + # We swap the id logic so that `id` is always the (super)group id + # (consistent with `polygonGrob()`) and `pathId` always the subgroup id. + pathId = id, pathId.lengths = id.lengths, + id = pathId, id.lengths = pathId.lengths + ) } - # The gp settings can override element_gp - gp <- gg_par( - col = colour, fill = arrow.fill %||% colour, - lwd = linewidth, lty = linetype, lineend = lineend - ) - element_gp <- gg_par( - col = element$colour, fill = element$arrow.fill %||% element$colour, - lwd = element$linewidth, lty = element$linetype, - lineend = element$lineend - ) - - polylineGrob( - x, y, default.units = default.units, - gp = modify_list(element_gp, gp), - id.lengths = id.lengths, arrow = arrow, ... - ) -} +S7::method(draw_element, element_point) <- + function(element, x = 0.5, y = 0.5, colour = NULL, + shape = NULL, fill = NULL, size = NULL, + stroke = NULL, ..., + default.units = "npc") { + + gp <- gg_par(col = colour, fill = fill, pointsize = size, stroke = stroke) + element_gp <- gg_par(col = element@colour, fill = element@fill, + pointsize = element@size, stroke = element@stroke) + shape <- translate_shape_string(shape %||% element@shape %||% 19) + pointsGrob(x = x, y = y, pch = shape, gp = modify_list(element_gp, gp), + default.units = default.units, ...) + } +# TODO: the S3 generic should be phased out once S7 is adopted more widely +#' @rdname draw_element #' @export -element_grob.element_polygon <- function(element, x = c(0, 0.5, 1, 0.5), - y = c(0.5, 1, 0.5, 0), fill = NULL, - colour = NULL, linewidth = NULL, - linetype = NULL, ..., - id = NULL, id.lengths = NULL, - pathId = NULL, pathId.lengths = NULL) { - - gp <- gg_par(lwd = linewidth, col = colour, fill = fill, lty = linetype) - element_gp <- gg_par(lwd = element$linewidth, col = element$colour, - fill = element$fill, lty = element$linetype) - pathGrob( - x = x, y = y, gp = modify_list(element_gp, gp), ..., - # We swap the id logic so that `id` is always the (super)group id - # (consistent with `polygonGrob()`) and `pathId` always the subgroup id. - pathId = id, pathId.lengths = id.lengths, - id = pathId, id.lengths = pathId.lengths - ) +element_grob <- function(element, ...) { + UseMethod("element_grob") } #' @export -element_grob.element_point <- function(element, x = 0.5, y = 0.5, colour = NULL, - shape = NULL, fill = NULL, size = NULL, - stroke = NULL, ..., - default.units = "npc") { - - gp <- gg_par(col = colour, fill = fill, pointsize = size, stroke = stroke) - element_gp <- gg_par(col = element$colour, fill = element$fill, - pointsize = element$size, stroke = element$stroke) - shape <- translate_shape_string(shape %||% element$shape %||% 19) - pointsGrob(x = x, y = y, pch = shape, gp = modify_list(element_gp, gp), - default.units = default.units, ...) +element_grob.default <- function(element, ...) { + draw_element(element, ...) } #' Define and register new theme elements @@ -484,7 +621,7 @@ element_grob.element_point <- function(element, x = 0.5, y = 0.5, colour = NULL, #' # plot panels. To do so, it registers a new theme element `ggxyz.panel.annotation` #' register_theme_elements( #' ggxyz.panel.annotation = element_text(color = "blue", hjust = 0.95, vjust = 0.05), -#' element_tree = list(ggxyz.panel.annotation = el_def("element_text", "text")) +#' element_tree = list(ggxyz.panel.annotation = el_def(element_text, "text")) #' ) #' #' # Now the package can define a new coord that includes a panel annotation @@ -603,8 +740,8 @@ check_element_tree <- function(x, arg = caller_arg(x), call = caller_env()) { #' @details #' The function `el_def()` is used to define new or modified element types and #' element inheritance relationships for the element tree. -#' @param class The name of the element class. Examples are "element_line" or -#' "element_text" or "unit", or one of the two reserved keywords "character" or +#' @param class The name of the element class. Examples are `element_line` or +#' `element_text` or "unit", or one of the two reserved keywords "character" or #' "margin". The reserved keyword "character" implies a character #' or numeric vector, not a class called "character". The keyword #' "margin" implies a unit vector of length 4, as created by [margin()]. @@ -615,6 +752,27 @@ check_element_tree <- function(x, arg = caller_arg(x), call = caller_env()) { #' @keywords internal #' @export el_def <- function(class = NULL, inherit = NULL, description = NULL) { + if (is.character(class) && length(class) == 1) { + # Swap S3 class name for S7 class object + class <- switch( + class, + element = element, + element_blank = element_blank, + element_rect = element_rect, + element_line = element_line, + element_text = element_text, + element_polygon = element_polygon, + element_point = element_point, + element_geom = element_geom, + margin = margin, + class + ) + } + # margins often occur in c("unit", "margin", "rel"), we cannot use the + # S7 class here because we don't support heterogeneous lists + if (is.character(class) && length(class) > 1) { + class[class == "margin"] <- "ggplot2::margin" + } list(class = class, inherit = inherit, description = description) } @@ -623,43 +781,43 @@ el_def <- function(class = NULL, inherit = NULL, description = NULL) { # among them. It should not be read from directly, since users may modify the # current element tree stored in ggplot_global$element_tree .element_tree <- list( - line = el_def("element_line"), - rect = el_def("element_rect"), - text = el_def("element_text"), - point = el_def("element_point"), - polygon = el_def("element_polygon"), - geom = el_def("element_geom"), - title = el_def("element_text", "text"), + line = el_def(element_line), + rect = el_def(element_rect), + text = el_def(element_text), + point = el_def(element_point), + polygon = el_def(element_polygon), + geom = el_def(element_geom), + title = el_def(element_text, "text"), spacing = el_def("unit"), margins = el_def(c("margin", "unit")), - axis.line = el_def("element_line", "line"), - axis.text = el_def("element_text", "text"), - axis.title = el_def("element_text", "title"), - axis.ticks = el_def("element_line", "line"), + axis.line = el_def(element_line, "line"), + axis.text = el_def(element_text, "text"), + axis.title = el_def(element_text, "title"), + axis.ticks = el_def(element_line, "line"), legend.key.size = el_def(c("unit", "rel"), "spacing"), - panel.grid = el_def("element_line", "line"), - panel.grid.major = el_def("element_line", "panel.grid"), - panel.grid.minor = el_def("element_line", "panel.grid"), - strip.text = el_def("element_text", "text"), - - axis.line.x = el_def("element_line", "axis.line"), - axis.line.x.top = el_def("element_line", "axis.line.x"), - axis.line.x.bottom = el_def("element_line", "axis.line.x"), - axis.line.y = el_def("element_line", "axis.line"), - axis.line.y.left = el_def("element_line", "axis.line.y"), - axis.line.y.right = el_def("element_line", "axis.line.y"), - axis.line.theta = el_def("element_line", "axis.line.x"), - axis.line.r = el_def("element_line", "axis.line.y"), - - axis.text.x = el_def("element_text", "axis.text"), - axis.text.x.top = el_def("element_text", "axis.text.x"), - axis.text.x.bottom = el_def("element_text", "axis.text.x"), - axis.text.y = el_def("element_text", "axis.text"), - axis.text.y.left = el_def("element_text", "axis.text.y"), - axis.text.y.right = el_def("element_text", "axis.text.y"), - axis.text.theta = el_def("element_text", "axis.text.x"), - axis.text.r = el_def("element_text", "axis.text.y"), + panel.grid = el_def(element_line, "line"), + panel.grid.major = el_def(element_line, "panel.grid"), + panel.grid.minor = el_def(element_line, "panel.grid"), + strip.text = el_def(element_text, "text"), + + axis.line.x = el_def(element_line, "axis.line"), + axis.line.x.top = el_def(element_line, "axis.line.x"), + axis.line.x.bottom = el_def(element_line, "axis.line.x"), + axis.line.y = el_def(element_line, "axis.line"), + axis.line.y.left = el_def(element_line, "axis.line.y"), + axis.line.y.right = el_def(element_line, "axis.line.y"), + axis.line.theta = el_def(element_line, "axis.line.x"), + axis.line.r = el_def(element_line, "axis.line.y"), + + axis.text.x = el_def(element_text, "axis.text"), + axis.text.x.top = el_def(element_text, "axis.text.x"), + axis.text.x.bottom = el_def(element_text, "axis.text.x"), + axis.text.y = el_def(element_text, "axis.text"), + axis.text.y.left = el_def(element_text, "axis.text.y"), + axis.text.y.right = el_def(element_text, "axis.text.y"), + axis.text.theta = el_def(element_text, "axis.text.x"), + axis.text.r = el_def(element_text, "axis.text.y"), axis.ticks.length = el_def(c("unit", "rel"), "spacing"), axis.ticks.length.x = el_def(c("unit", "rel"), "axis.ticks.length"), @@ -671,28 +829,28 @@ el_def <- function(class = NULL, inherit = NULL, description = NULL) { axis.ticks.length.theta = el_def(c("unit", "rel"), "axis.ticks.length.x"), axis.ticks.length.r = el_def(c("unit", "rel"), "axis.ticks.length.y"), - axis.ticks.x = el_def("element_line", "axis.ticks"), - axis.ticks.x.top = el_def("element_line", "axis.ticks.x"), - axis.ticks.x.bottom = el_def("element_line", "axis.ticks.x"), - axis.ticks.y = el_def("element_line", "axis.ticks"), - axis.ticks.y.left = el_def("element_line", "axis.ticks.y"), - axis.ticks.y.right = el_def("element_line", "axis.ticks.y"), - axis.ticks.theta = el_def("element_line", "axis.ticks.x"), - axis.ticks.r = el_def("element_line", "axis.ticks.y"), - - axis.title.x = el_def("element_text", "axis.title"), - axis.title.x.top = el_def("element_text", "axis.title.x"), - axis.title.x.bottom = el_def("element_text", "axis.title.x"), - axis.title.y = el_def("element_text", "axis.title"), - axis.title.y.left = el_def("element_text", "axis.title.y"), - axis.title.y.right = el_def("element_text", "axis.title.y"), - - axis.minor.ticks.x.top = el_def("element_line", "axis.ticks.x.top"), - axis.minor.ticks.x.bottom = el_def("element_line", "axis.ticks.x.bottom"), - axis.minor.ticks.y.left = el_def("element_line", "axis.ticks.y.left"), - axis.minor.ticks.y.right = el_def("element_line", "axis.ticks.y.right"), - axis.minor.ticks.theta = el_def("element_line", "axis.ticks.theta"), - axis.minor.ticks.r = el_def("element_line", "axis.ticks.r"), + axis.ticks.x = el_def(element_line, "axis.ticks"), + axis.ticks.x.top = el_def(element_line, "axis.ticks.x"), + axis.ticks.x.bottom = el_def(element_line, "axis.ticks.x"), + axis.ticks.y = el_def(element_line, "axis.ticks"), + axis.ticks.y.left = el_def(element_line, "axis.ticks.y"), + axis.ticks.y.right = el_def(element_line, "axis.ticks.y"), + axis.ticks.theta = el_def(element_line, "axis.ticks.x"), + axis.ticks.r = el_def(element_line, "axis.ticks.y"), + + axis.title.x = el_def(element_text, "axis.title"), + axis.title.x.top = el_def(element_text, "axis.title.x"), + axis.title.x.bottom = el_def(element_text, "axis.title.x"), + axis.title.y = el_def(element_text, "axis.title"), + axis.title.y.left = el_def(element_text, "axis.title.y"), + axis.title.y.right = el_def(element_text, "axis.title.y"), + + axis.minor.ticks.x.top = el_def(element_line, "axis.ticks.x.top"), + axis.minor.ticks.x.bottom = el_def(element_line, "axis.ticks.x.bottom"), + axis.minor.ticks.y.left = el_def(element_line, "axis.ticks.y.left"), + axis.minor.ticks.y.right = el_def(element_line, "axis.ticks.y.right"), + axis.minor.ticks.theta = el_def(element_line, "axis.ticks.theta"), + axis.minor.ticks.r = el_def(element_line, "axis.ticks.r"), axis.minor.ticks.length = el_def(c("unit", "rel")), axis.minor.ticks.length.x = el_def(c("unit", "rel"), "axis.minor.ticks.length"), @@ -716,25 +874,25 @@ el_def <- function(class = NULL, inherit = NULL, description = NULL) { c("unit", "rel"), c("axis.minor.ticks.length.y", "axis.ticks.length.r") ), - legend.background = el_def("element_rect", "rect"), + legend.background = el_def(element_rect, "rect"), legend.margin = el_def(c("margin", "unit", "rel"), "margins"), legend.spacing = el_def(c("unit", "rel"), "spacing"), legend.spacing.x = el_def(c("unit", "rel"), "legend.spacing"), legend.spacing.y = el_def(c("unit", "rel"), "legend.spacing"), - legend.key = el_def("element_rect", "panel.background"), + legend.key = el_def(element_rect, "panel.background"), legend.key.height = el_def(c("unit", "rel"), "legend.key.size"), legend.key.width = el_def(c("unit", "rel"), "legend.key.size"), legend.key.spacing = el_def(c("unit", "rel"), "spacing"), legend.key.spacing.x = el_def(c("unit", "rel"), "legend.key.spacing"), legend.key.spacing.y = el_def(c("unit", "rel"), "legend.key.spacing"), legend.key.justification = el_def(c("character", "numeric", "integer")), - legend.frame = el_def("element_rect", "rect"), - legend.axis.line = el_def("element_line", "line"), - legend.ticks = el_def("element_line", "legend.axis.line"), + legend.frame = el_def(element_rect, "rect"), + legend.axis.line = el_def(element_line, "line"), + legend.ticks = el_def(element_line, "legend.axis.line"), legend.ticks.length = el_def(c("rel", "unit"), "legend.key.size"), - legend.text = el_def("element_text", "text"), + legend.text = el_def(element_text, "text"), legend.text.position = el_def("character"), - legend.title = el_def("element_text", "title"), + legend.title = el_def(element_text, "title"), legend.title.position = el_def("character"), legend.byrow = el_def("logical"), legend.position = el_def("character"), @@ -768,45 +926,45 @@ el_def <- function(class = NULL, inherit = NULL, description = NULL) { legend.box = el_def("character"), legend.box.just = el_def("character"), legend.box.margin = el_def(c("margin", "unit", "rel"), "margins"), - legend.box.background = el_def("element_rect", "rect"), + legend.box.background = el_def(element_rect, "rect"), legend.box.spacing = el_def(c("unit", "rel"), "spacing"), - panel.background = el_def("element_rect", "rect"), - panel.border = el_def("element_rect", "rect"), + panel.background = el_def(element_rect, "rect"), + panel.border = el_def(element_rect, "rect"), panel.spacing = el_def(c("unit", "rel"), "spacing"), panel.spacing.x = el_def(c("unit", "rel"), "panel.spacing"), panel.spacing.y = el_def(c("unit", "rel"), "panel.spacing"), - panel.grid.major.x = el_def("element_line", "panel.grid.major"), - panel.grid.major.y = el_def("element_line", "panel.grid.major"), - panel.grid.minor.x = el_def("element_line", "panel.grid.minor"), - panel.grid.minor.y = el_def("element_line", "panel.grid.minor"), + panel.grid.major.x = el_def(element_line, "panel.grid.major"), + panel.grid.major.y = el_def(element_line, "panel.grid.major"), + panel.grid.minor.x = el_def(element_line, "panel.grid.minor"), + panel.grid.minor.y = el_def(element_line, "panel.grid.minor"), panel.ontop = el_def("logical"), panel.widths = el_def("unit"), panel.heights = el_def("unit"), - strip.background = el_def("element_rect", "rect"), - strip.background.x = el_def("element_rect", "strip.background"), - strip.background.y = el_def("element_rect", "strip.background"), + strip.background = el_def(element_rect, "rect"), + strip.background.x = el_def(element_rect, "strip.background"), + strip.background.y = el_def(element_rect, "strip.background"), strip.clip = el_def("character"), - strip.text.x = el_def("element_text", "strip.text"), - strip.text.x.top = el_def("element_text", "strip.text.x"), - strip.text.x.bottom = el_def("element_text", "strip.text.x"), - strip.text.y = el_def("element_text", "strip.text"), - strip.text.y.left = el_def("element_text", "strip.text.y"), - strip.text.y.right = el_def("element_text", "strip.text.y"), + strip.text.x = el_def(element_text, "strip.text"), + strip.text.x.top = el_def(element_text, "strip.text.x"), + strip.text.x.bottom = el_def(element_text, "strip.text.x"), + strip.text.y = el_def(element_text, "strip.text"), + strip.text.y.left = el_def(element_text, "strip.text.y"), + strip.text.y.right = el_def(element_text, "strip.text.y"), strip.placement = el_def("character"), strip.placement.x = el_def("character", "strip.placement"), strip.placement.y = el_def("character", "strip.placement"), strip.switch.pad.grid = el_def(c("unit", "rel"), "spacing"), strip.switch.pad.wrap = el_def(c("unit", "rel"), "spacing"), - plot.background = el_def("element_rect", "rect"), - plot.title = el_def("element_text", "title"), + plot.background = el_def(element_rect, "rect"), + plot.title = el_def(element_text, "title"), plot.title.position = el_def("character"), - plot.subtitle = el_def("element_text", "text"), - plot.caption = el_def("element_text", "text"), + plot.subtitle = el_def(element_text, "text"), + plot.caption = el_def(element_text, "text"), plot.caption.position = el_def("character"), - plot.tag = el_def("element_text", "text"), + plot.tag = el_def(element_text, "text"), plot.tag.position = el_def(c("character", "numeric", "integer")), # Need to also accept numbers plot.tag.location = el_def("character"), plot.margin = el_def(c("margin", "unit", "rel"), "margins"), @@ -851,11 +1009,39 @@ check_element <- function(el, elname, element_tree, call = caller_env()) { # NULL values for elements are OK if (is.null(el)) return() - if ("margin" %in% eldef$class) { - if (!is.unit(el) && length(el) == 4) - cli::cli_abort("The {.var {elname}} theme element must be a {.cls unit} vector of length 4.", call = call) - } else if (!inherits(el, eldef$class) && !is_theme_element(el, "blank")) { - cli::cli_abort("The {.var {elname}} theme element must be a {.cls {eldef$class}} object.", call = call) + class <- eldef$class + if (inherits(class, "S7_class")) { + inherit_ok <- S7::S7_inherits(el, class) + # For backward compatibility + # TODO: deprecate next release cycle + old_s3_inherits <- inherits(el, class@name) + inherit_ok <- inherit_ok || old_s3_inherits + } else { + inherit_ok <- inherits(el, class) } - invisible() + + if (is.character(class) && any(c("margin", "ggplot2::margin") %in% class)) { + if ("rel" %in% class && is_rel(el)) { + return() + } + if (is.unit(el) && length(el) == 4) { + return() + } + cli::cli_abort( + "The {.var {elname}} theme element must be a {.cls unit} vector of length 4", + call = call + ) + } + + # Maybe we should check that `class` is an element class before approving of + # blank elements? + if (inherit_ok || is_theme_element(el, "blank")) { + return() + } + + class_name <- if (inherits(class, "S7_class")) class@name else class + cli::cli_abort( + "The {.var {elname}} theme element must be a {.cls {class_name}} object.", + call = call + ) } diff --git a/R/theme.R b/R/theme.R index 7f6c1b93fd..62bc673d13 100644 --- a/R/theme.R +++ b/R/theme.R @@ -217,7 +217,7 @@ #' @param validate `TRUE` to run `check_element()`, `FALSE` to bypass checks. #' @export #' @seealso -#' [+.gg()] and [%+replace%], +#' [add_gg()] and [%+replace%], #' [element_blank()], [element_line()], #' [element_rect()], and [element_text()] for #' details of the specific theme elements. @@ -490,18 +490,16 @@ theme <- function(..., # If complete theme set all non-blank elements to inherit from blanks if (complete) { elements <- lapply(elements, function(el) { - if (is_theme_element(el) && !is_theme_element(el, "blank")) { - el$inherit.blank <- TRUE + if (is_theme_element(el) && S7::prop_exists(el, "inherit.blank")) { + S7::prop(el, "inherit.blank") <- TRUE } el }) } - structure( - elements, - class = c("theme", "gg"), - complete = complete, - validate = validate - ) + + t <- class_theme(elements, complete = complete, validate = validate) + class(t) <- union("theme", class(t)) + t } fix_theme_deprecations <- function(elements) { @@ -592,7 +590,7 @@ validate_theme_palettes <- function(elements) { #' @export #' @rdname is_tests -is_theme <- function(x) inherits(x, "theme") +is_theme <- function(x) S7::S7_inherits(x, class_theme) #' @export #' @rdname is_tests @@ -603,12 +601,13 @@ is.theme <- function(x) { } # check whether theme is complete -is_theme_complete <- function(x) isTRUE(attr(x, "complete", exact = TRUE)) +is_theme_complete <- function(x) { + is_theme(x) && isTRUE(x@complete) +} # check whether theme should be validated is_theme_validate <- function(x) { - validate <- attr(x, "validate", exact = TRUE) - isTRUE(validate %||% TRUE) + !is_theme(x) || isTRUE(x@validate) } check_theme <- function(theme, tree = get_element_tree(), call = caller_env()) { @@ -648,21 +647,19 @@ complete_theme <- function(theme = NULL, default = theme_get()) { } check_object(default, is_theme, "a {.cls theme} object") theme <- plot_theme(list(theme = theme), default = default) - - # Using `theme(!!!theme)` drops `NULL` entries, so strip most attributes and - # construct a new theme - attributes(theme) <- list(names = attr(theme, "names")) - structure( - theme, - class = c("theme", "gg"), - complete = TRUE, # This theme is complete and has no missing elements - validate = FALSE # Settings have already been validated - ) + theme@complete <- TRUE + theme@validate <- FALSE + theme } # Combine plot defaults with current theme to get complete theme for a plot plot_theme <- function(x, default = get_theme()) { - theme <- x$theme + if (S7::S7_inherits(x)) { + theme <- x@theme + } else { + theme <- x$theme + } + # apply theme defaults appropriately if needed if (is_theme_complete(theme)) { @@ -724,13 +721,12 @@ add_theme <- function(t1, t2, t2name, call = caller_env()) { } ) - # make sure the "complete" attribute is set; this can be missing - # when t1 is an empty list - attr(t1, "complete") <- is_theme_complete(t1) + if (!is_theme(t1) && is.list(t1)) { + t1 <- theme(!!!t1) + } # Only validate if both themes should be validated - attr(t1, "validate") <- - is_theme_validate(t1) && is_theme_validate(t2) + t1@validate <- is_theme_validate(t1) && is_theme_validate(t2) t1 } @@ -766,7 +762,7 @@ calc_element <- function(element, theme, verbose = FALSE, skip_blank = FALSE, # If result is element_blank, we skip it if `skip_blank` is `TRUE`, # and otherwise we don't inherit anything from parents - if (inherits(el_out, "element_blank")) { + if (is_theme_element(el_out, "blank")) { if (isTRUE(skip_blank)) { el_out <- NULL } else { @@ -780,9 +776,18 @@ calc_element <- function(element, theme, verbose = FALSE, skip_blank = FALSE, # If the element is defined (and not just inherited), check that # it is of the class specified in element_tree - if (!is.null(el_out) && - !inherits(el_out, element_tree[[element]]$class)) { - cli::cli_abort("Theme element {.var {element}} must have class {.cls {ggplot_global$element_tree[[element]]$class}}.", call = call) + if (!is.null(el_out)) { + class <- element_tree[[element]]$class + if (inherits(class, "S7_class")) { + old_s3_inherit <- inherits(el_out, class@name) + if (!S7::S7_inherits(el_out, class) && !old_s3_inherit) { + cli::cli_abort("Theme element {.var {element}} must have class {.cls {class@name}}.", call = call) + } + } else { + if (!inherits(el_out, class)) { + cli::cli_abort("Theme element {.var {element}} must have class {.cls {ggplot_global$element_tree[[element]]$class}}.", call = call) + } + } } # Get the names of parents from the inheritance tree @@ -793,15 +798,23 @@ calc_element <- function(element, theme, verbose = FALSE, skip_blank = FALSE, if (verbose) cli::cli_inform("nothing (top level)") # Check that all the properties of this element are non-NULL - nullprops <- vapply(el_out, is.null, logical(1)) + if (is_theme_element(el_out)) { + nullprops <- lengths(S7::props(el_out)) == 0 + } else { + nullprops <- vapply(el_out, is.null, logical(1)) + } if (!any(nullprops)) { return(el_out) # no null properties, return element as is } # if we have null properties, try to fill in from ggplot_global$theme_default el_out <- combine_elements(el_out, ggplot_global$theme_default[[element]]) - nullprops <- vapply(el_out, is.null, logical(1)) - if (inherits(el_out, "element_geom")) { + if (is_theme_element(el_out)) { + nullprops <- lengths(S7::props(el_out)) == 0 + } else { + nullprops <- vapply(el_out, is.null, logical(1)) + } + if (is_theme_element(el_out, "geom")) { # Geom elements are expected to have NULL fill/colour, so allow these # to be missing nullprops[c("colour", "fill")] <- FALSE @@ -815,15 +828,19 @@ calc_element <- function(element, theme, verbose = FALSE, skip_blank = FALSE, # Calculate the parent objects' inheritance if (verbose) cli::cli_inform("{pnames}") + + # once we've started skipping blanks, we continue doing so until the end of the + # recursion; we initiate skipping blanks if we encounter an element that + # doesn't inherit blank. + skip_blank <- skip_blank || + (!is.null(el_out) && !isTRUE(try_prop(el_out, "inherit.blank"))) + parents <- lapply( pnames, calc_element, theme, verbose = verbose, - # once we've started skipping blanks, we continue doing so until the end of the - # recursion; we initiate skipping blanks if we encounter an element that - # doesn't inherit blank. - skip_blank = skip_blank || (!is.null(el_out) && !isTRUE(el_out$inherit.blank)), + skip_blank = skip_blank, call = call ) @@ -849,69 +866,74 @@ calc_element <- function(element, theme, verbose = FALSE, skip_blank = FALSE, #' # Adopt size but ignore colour #' merge_element(new, old) #' -merge_element <- function(new, old) { - UseMethod("merge_element") -} - -#' @rdname merge_element -#' @export -merge_element.default <- function(new, old) { - if (is.null(old) || inherits(old, "element_blank")) { +merge_element <- S7::new_generic( + "merge_element", dispatch_args = c("new", "old"), + fun = function(new, old, ...) { # If old is NULL or element_blank, then just return new - return(new) - } else if (is.null(new) || is.character(new) || is.numeric(new) || is.unit(new) || - is.logical(new) || is.function(new)) { - # If new is NULL, or a string, numeric vector, unit, or logical, just return it - return(new) + if (is.null(old) || is_theme_element(old, "blank")) { + return(new) + } + S7::S7_dispatch() } +) + +S7::method(merge_element, list(S7::class_any, S7::class_any)) <- + function(new, old, ...) { + if (is.null(new) || is.character(new) || is.numeric(new) || is.unit(new) || + is.logical(new) || is.function(new)) { + # If new is NULL, or a string, numeric vector, unit, or logical, just return it + return(new) + } - # otherwise we can't merge - cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") -} - -#' @rdname merge_element -#' @export -merge_element.element_blank <- function(new, old) { - # If new is element_blank, just return it - new -} - -#' @rdname merge_element -#' @export -merge_element.element <- function(new, old) { - if (is.null(old) || inherits(old, "element_blank")) { - # If old is NULL or element_blank, then just return new - return(new) + # otherwise we can't merge + cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") } - # actual merging can only happen if classes match - if (!inherits(new, class(old)[1])) { - cli::cli_abort("Only elements of the same class can be merged.") +S7::method(merge_element, list(element_blank, S7::class_any)) <- + function(new, old, ...) { + # If new is element_blank, just return it + new } - # Override NULL properties of new with the values in old - # Get logical vector of NULL properties in new - idx <- vapply(new, is.null, logical(1)) - # Get the names of TRUE items - idx <- names(idx[idx]) +S7::method(merge_element, list(element, S7::class_any)) <- + function(new, old, ...) { + # actual merging can only happen if classes match + if (!inherits(new, class(old)[1])) { + cli::cli_abort("Only elements of the same class can be merged.") + } + + # Override NULL properties of new with the values in old + # Get logical vector of NULL properties in new + idx <- lengths(S7::props(new)) == 0 + # Get the names of TRUE items + idx <- names(idx[idx]) - # Update non-NULL items - new[idx] <- old[idx] + # Update non-NULL items + S7::props(new)[idx] <- S7::props(old, idx) - new + new } -#' @rdname merge_element -#' @export -merge_element.margin <- function(new, old) { - if (is.null(old) || inherits(old, "element_blank")) { - return(new) +S7::method(merge_element, list(margin, S7::class_any)) <- + function(new, old, ...) { + if (anyNA(new)) { + new[is.na(new)] <- old[is.na(new)] + } + new } - if (anyNA(new)) { - new[is.na(new)] <- old[is.na(new)] + +# For backward compatibility +# TODO: in subsequent release cycle, start deprecation +S7::method(merge_element, list(S7::new_S3_class("element"), S7::class_any)) <- + function(new, old, ...) { + if (S7::S7_inherits(old)) { + old <- S7::props(old) + } + idx <- lengths(new) == 0 + idx <- names(idx[idx]) + new[idx] <- old[idx] + new } - new -} #' Combine the properties of two elements #' @@ -923,7 +945,7 @@ merge_element.margin <- function(new, old) { combine_elements <- function(e1, e2) { # If e2 is NULL, nothing to inherit - if (is.null(e2) || inherits(e1, "element_blank")) { + if (is.null(e2) || is_theme_element(e1, "blank")) { return(e1) } @@ -946,7 +968,7 @@ combine_elements <- function(e1, e2) { return(e1) } - if (inherits(e1, "margin") && inherits(e2, "margin")) { + if (is_margin(e1) && is_margin(e2)) { if (anyNA(e2)) { e2[is.na(e2)] <- unit(0, "pt") } @@ -955,6 +977,12 @@ combine_elements <- function(e1, e2) { } } + # Backward compatbility + # TODO: deprecate next release cycle + if (inherits(e1, "element") && is_theme_element(e2)) { + return(combine_s3_elements(e1, e2)) + } + # If neither of e1 or e2 are element_* objects, return e1 if (!is_theme_element(e1) && !is_theme_element(e2)) { return(e1) @@ -962,8 +990,8 @@ combine_elements <- function(e1, e2) { # If e2 is element_blank, and e1 inherits blank inherit everything from e2, # otherwise ignore e2 - if (inherits(e2, "element_blank")) { - if (e1$inherit.blank) { + if (is_theme_element(e2, "blank")) { + if (isTRUE(try_prop(e1, "inherit.blank"))) { return(e2) } else { return(e1) @@ -971,39 +999,58 @@ combine_elements <- function(e1, e2) { } # If e1 has any NULL properties, inherit them from e2 - n <- names(e1)[vapply(e1, is.null, logical(1))] - e1[n] <- e2[n] + n <- S7::prop_names(e1)[lengths(S7::props(e1)) == 0] + S7::props(e1)[n] <- S7::props(e2)[n] # Calculate relative sizes - if (is_rel(e1$size)) { - e1$size <- e2$size * unclass(e1$size) + if (is_rel(try_prop(e1, "size"))) { + e1@size <- e2@size * unclass(e1@size) } # Calculate relative linewidth - if (is_rel(e1$linewidth)) { - e1$linewidth <- e2$linewidth * unclass(e1$linewidth) + if (is_rel(try_prop(e1, "linewidth"))) { + e1@linewidth <- e2@linewidth * unclass(e1@linewidth) } - if (inherits(e1, "element_text")) { - e1$margin <- combine_elements(e1$margin, e2$margin) + if (is_theme_element(e1, "text")) { + e1@margin <- combine_elements(e1@margin, e2@margin) } # If e2 is 'richer' than e1, fill e2 with e1 parameters is_subclass <- !any(inherits(e2, class(e1), which = TRUE) == 0) is_subclass <- is_subclass && length(setdiff(class(e2), class(e1))) > 0 if (is_subclass) { - new <- defaults(e1, e2) - e2[names(new)] <- new + new <- defaults(S7::props(e1), S7::props(e2)) + S7::props(e2)[names(new)] <- new return(e2) } e1 } +# For backward compatibility +# TODO: in subsequent release cycle, start deprecation +combine_s3_elements <- function(e1, e2) { + e1 <- merge_element(e1, e2) + if (S7::S7_inherits(e2)) { + e2 <- S7::props(e2) + } + if (is_rel(e1$size)) { + e1$size <- e2$size * unclass(e1$size) + } + if (is_rel(e1$linewidth)) { + e1$linewidth <- e2$linewidth * unclass(e1$linewidth) + } + if (inherits(e1, "element_text")) { + e1$margin <- combine_elements(e1$margin, e2$margin) + } + return(e1) +} + #' @export -`$.theme` <- function(x, ...) { +`$.ggplot2::theme` <- function(x, ...) { .subset2(x, ...) } #' @export -print.theme <- function(x, ...) utils::str(x) +`print.ggplot2::theme` <- function(x, ...) utils::str(x) diff --git a/R/utilities.R b/R/utilities.R index d4fd0ccef4..ec375b723e 100644 --- a/R/utilities.R +++ b/R/utilities.R @@ -907,3 +907,13 @@ compute_data_size <- function(data, size, default = 0.9, data[[target]] <- res * (default %||% 0.9) data } + +try_prop <- function(object, name, default = NULL) { + if (!S7::S7_inherits(object)) { + return(default) + } + if (!S7::prop_exists(object, name)) { + return(default) + } + S7::prop(object, name) +} diff --git a/R/zzz.R b/R/zzz.R index 398cb7d7b6..9bfffde0a6 100644 --- a/R/zzz.R +++ b/R/zzz.R @@ -30,6 +30,12 @@ on_load( vars <- dplyr::vars } ) + +on_load( + if (getRversion() > "4.3.0") registerS3method("+", "gg", add_gg) +) + +on_load(S7::methods_register()) .onLoad <- function(...) { run_on_load() } diff --git a/_pkgdown.yml b/_pkgdown.yml index 1d576a97a0..acce0a8e28 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -37,7 +37,7 @@ reference: contents: - ggplot - aes - - "`+.gg`" + - add_gg - ggsave - qplot diff --git a/man/aes.Rd b/man/aes.Rd index ed77c5d39e..adce5c7ad4 100644 --- a/man/aes.Rd +++ b/man/aes.Rd @@ -17,8 +17,8 @@ The names for x and y aesthetics are typically omitted because they are so common; all other aesthetics must be named.} } \value{ -A list with class \code{uneval}. Components of the list are either -quosures or constants. +An S7 object representing a list with class \code{mapping}. Components of +the list are either quosures or constants. } \description{ Aesthetic mappings describe how variables in the data are mapped to visual diff --git a/man/ggplot_build.Rd b/man/build_ggplot.Rd similarity index 83% rename from man/ggplot_build.Rd rename to man/build_ggplot.Rd index 239677f6ce..e5157679ee 100644 --- a/man/ggplot_build.Rd +++ b/man/build_ggplot.Rd @@ -1,6 +1,7 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/plot-build.R -\name{ggplot_build} +\name{build_ggplot} +\alias{build_ggplot} \alias{ggplot_build} \alias{get_layer_data} \alias{layer_data} @@ -10,7 +11,9 @@ \alias{layer_grob} \title{Build ggplot for rendering.} \usage{ -ggplot_build(plot) +build_ggplot(plot, ...) + +ggplot_build(plot, ...) get_layer_data(plot = get_last_plot(), i = 1L) @@ -27,6 +30,8 @@ layer_grob(plot = get_last_plot(), i = 1L) \arguments{ \item{plot}{ggplot object} +\item{...}{Not currently in use.} + \item{i}{An integer. In \code{get_layer_data()}, the data to return (in the order added to the plot). In \code{get_layer_grob()}, the grob to return (in the order added to the plot). In \code{get_panel_scales()}, the row of a facet to return scales for.} @@ -35,10 +40,11 @@ plot). In \code{get_panel_scales()}, the row of a facet to return scales for.} scales for.} } \description{ -\code{ggplot_build()} takes the plot object, and performs all steps necessary +\code{build_ggplot()} takes the plot object, and performs all steps necessary to produce an object that can be rendered. This function outputs two pieces: a list of data frames (one for each layer), and a panel object, which -contain all information about axis limits, breaks etc. +contain all information about axis limits, breaks etc. The \code{ggplot_build()} +function is vestigial and \code{build_ggplot()} should be used instead. } \details{ \code{get_layer_data()}, \code{get_layer_grob()}, and \code{get_panel_scales()} are helper diff --git a/man/class_ggplot.Rd b/man/class_ggplot.Rd new file mode 100644 index 0000000000..05b4f3e0df --- /dev/null +++ b/man/class_ggplot.Rd @@ -0,0 +1,54 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/all-classes.R +\name{class_ggplot} +\alias{class_ggplot} +\title{The ggplot class} +\usage{ +class_ggplot( + data = waiver(), + layers = list(), + scales = NULL, + guides = NULL, + mapping = aes(), + theme = NULL, + coordinates = coord_cartesian(default = TRUE), + facet = facet_null(), + layout = NULL, + labels = labs(), + meta = list(), + plot_env = parent.frame() +) +} +\arguments{ +\item{data}{A property containing any data coerced by \code{\link[=fortify]{fortify()}}.} + +\item{layers}{A list of layer instances created by \code{\link[=layer]{layer()}}.} + +\item{scales}{A ScalesList ggproto object.} + +\item{guides}{A Guides ggproto object created by \code{\link[=guides]{guides()}}.} + +\item{mapping}{A mapping class object created by \code{\link[=aes]{aes()}}.} + +\item{theme}{A theme class object created by \code{\link[=theme]{theme()}}.} + +\item{coordinates}{A Coord ggproto object created by \verb{coord_*()} family of +functions.} + +\item{facet}{A Facet ggproto object created by \verb{facet_*()} family of +functions.} + +\item{layout}{A Layout ggproto object.} + +\item{labels}{A labels object created by \code{\link[=labs]{labs()}}.} + +\item{meta}{A list for additional metadata. This will be deprecated in the +future.} + +\item{plot_env}{An environment.} +} +\description{ +The ggplot class collects the needed information to render a plot. +This class can be constructed using the \code{\link[=ggplot]{ggplot()}} function. +} +\keyword{internal} diff --git a/man/class_ggplot_built.Rd b/man/class_ggplot_built.Rd new file mode 100644 index 0000000000..4e87451998 --- /dev/null +++ b/man/class_ggplot_built.Rd @@ -0,0 +1,23 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/all-classes.R +\name{class_ggplot_built} +\alias{class_ggplot_built} +\title{The ggplot built class} +\usage{ +class_ggplot_built(data = NULL, layout = NULL, plot = NULL) +} +\arguments{ +\item{data}{A list of plain data frames; one for each layer.} + +\item{layout}{A Layout ggproto object.} + +\item{plot}{A completed ggplot class object.} +} +\description{ +The ggplot built class is an intermediate class and represents a processed +ggplot object ready for rendering. It is constructed by calling +\code{\link[=ggplot_build]{ggplot_build()}} on a \link[=class_ggplot]{ggplot} object and is not meant to be +instantiated directly. The class can be rendered to a gtable object by +calling the \code{\link[=ggplot_gtable]{ggplot_gtable()}} function on a ggplot built class object. +} +\keyword{internal} diff --git a/man/class_labels.Rd b/man/class_labels.Rd new file mode 100644 index 0000000000..57788e666d --- /dev/null +++ b/man/class_labels.Rd @@ -0,0 +1,17 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/all-classes.R +\name{class_labels} +\alias{class_labels} +\title{The labels class} +\usage{ +class_labels(labels) +} +\arguments{ +\item{labels}{A named list.} +} +\description{ +The labels class holds a list with label information to display as titles +of plot components. The preferred way to construct an object of the labels +class is to use the \code{\link[=labs]{labs()}} function. +} +\keyword{internal} diff --git a/man/class_mapping.Rd b/man/class_mapping.Rd new file mode 100644 index 0000000000..63f75456d3 --- /dev/null +++ b/man/class_mapping.Rd @@ -0,0 +1,19 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/all-classes.R +\name{class_mapping} +\alias{class_mapping} +\title{The mapping class} +\usage{ +class_mapping(x, env = globalenv()) +} +\arguments{ +\item{x}{A list of quosures and constants.} + +\item{env}{An environment for symbols that are not quosures or constants.} +} +\description{ +The mapping class holds a list of quoted expressions +(\link[rlang:topic-quosure]{quosures}) or constants. An object is typically +constructed using the \code{\link[=aes]{aes()}} function. +} +\keyword{internal} diff --git a/man/class_theme.Rd b/man/class_theme.Rd new file mode 100644 index 0000000000..ab3a03ef1d --- /dev/null +++ b/man/class_theme.Rd @@ -0,0 +1,22 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/all-classes.R +\name{class_theme} +\alias{class_theme} +\title{The theme class} +\usage{ +class_theme(elements, complete, validate) +} +\arguments{ +\item{elements}{A named list containing theme elements.} + +\item{complete}{A boolean value stating whether a theme is complete.} + +\item{validate}{A boolean value stating whether a theme should still be +validated.} +} +\description{ +The theme class holds information on how non-data elements of the plot +should be rendered. The preferred way to construct an object of this class +is through the \code{\link[=theme]{theme()}} function. +} +\keyword{internal} diff --git a/man/element_grob.Rd b/man/draw_element.Rd similarity index 73% rename from man/element_grob.Rd rename to man/draw_element.Rd index 589f3a3abc..0fe2510351 100644 --- a/man/element_grob.Rd +++ b/man/draw_element.Rd @@ -1,9 +1,12 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/theme-elements.R -\name{element_grob} +\name{draw_element} +\alias{draw_element} \alias{element_grob} \title{Generate grid grob from theme element} \usage{ +draw_element(element, ...) + element_grob(element, ...) } \arguments{ @@ -13,6 +16,7 @@ element_grob(element, ...) usually at least position. See the source code for individual methods.} } \description{ -Generate grid grob from theme element +The \code{element_grob()} function is vestigial and \code{draw_element()} should +be used instead. } \keyword{internal} diff --git a/man/element.Rd b/man/element.Rd index 6ee08dd20d..14a020db17 100644 --- a/man/element.Rd +++ b/man/element.Rd @@ -1,6 +1,10 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/theme-elements.R, R/margins.R -\name{element} +% Please edit documentation in R/margins.R, R/theme-elements.R +\name{margin} +\alias{margin} +\alias{margin_part} +\alias{margin_auto} +\alias{element} \alias{element_blank} \alias{element_rect} \alias{element_line} @@ -9,11 +13,16 @@ \alias{element_point} \alias{element_geom} \alias{rel} -\alias{margin} -\alias{margin_part} -\alias{margin_auto} \title{Theme elements} \usage{ +margin(t = 0, r = 0, b = 0, l = 0, unit = "pt") + +margin_part(t = NA, r = NA, b = NA, l = NA, unit = "pt") + +margin_auto(t = 0, r = t, b = t, l = r, unit = "pt") + +element() + element_blank() element_rect( @@ -22,6 +31,7 @@ element_rect( linewidth = NULL, linetype = NULL, color = NULL, + linejoin = NULL, inherit.blank = FALSE, size = deprecated() ) @@ -32,6 +42,7 @@ element_line( linetype = NULL, lineend = NULL, color = NULL, + linejoin = NULL, arrow = NULL, arrow.fill = NULL, inherit.blank = FALSE, @@ -59,6 +70,7 @@ element_polygon( linewidth = NULL, linetype = NULL, color = NULL, + linejoin = NULL, inherit.blank = FALSE ) @@ -90,14 +102,13 @@ element_geom( ) rel(x) - -margin(t = 0, r = 0, b = 0, l = 0, unit = "pt") - -margin_part(t = NA, r = NA, b = NA, l = NA, unit = "pt") - -margin_auto(t = 0, r = t, b = t, l = r, unit = "pt") } \arguments{ +\item{t, r, b, l}{Dimensions of each margin. (To remember order, think trouble).} + +\item{unit}{Default units of dimensions. Defaults to "pt" so it +can be most easily scaled with the text.} + \item{fill}{Fill colour. \code{fill_alpha()} can be used to set the transparency of the fill.} @@ -111,6 +122,8 @@ integer (0:8), a name (blank, solid, dashed, dotted, dotdash, longdash, twodash), or a string with an even number (up to eight) of hexadecimal digits which give the lengths in consecutive positions in the string.} +\item{linejoin}{Line join style, one of \code{"round"}, \code{"mitre"} or \code{"bevel"}.} + \item{inherit.blank}{Should this element inherit the existence of an \code{element_blank} among its parents? If \code{TRUE} the existence of a blank element among its parents will cause this element to be blank as @@ -119,7 +132,7 @@ calculating final element state.} \item{size, fontsize, pointsize}{text size in pts, point size in mm.} -\item{lineend}{Line end Line end style (round, butt, square)} +\item{lineend}{Line end style, one of \code{"round"}, \code{"butt"} or \code{"square"}.} \item{arrow}{Arrow specification, as created by \code{\link[grid:arrow]{grid::arrow()}}} @@ -161,11 +174,6 @@ is anchored.} \item{accent}{Accent colour.} \item{x}{A single number specifying size relative to parent element.} - -\item{t, r, b, l}{Dimensions of each margin. (To remember order, think trouble).} - -\item{unit}{Default units of dimensions. Defaults to "pt" so it -can be most easily scaled with the text.} } \value{ An S3 object of class \code{element}, \code{rel}, or \code{margin}. diff --git a/man/get_theme.Rd b/man/get_theme.Rd index d3283d0e67..d8198c4197 100644 --- a/man/get_theme.Rd +++ b/man/get_theme.Rd @@ -120,5 +120,5 @@ rep_el$text } \seealso{ -\code{\link[=+.gg]{+.gg()}} +\code{\link[=add_gg]{add_gg()}} } diff --git a/man/gg-add.Rd b/man/gg-add.Rd index bd5e374caa..560f74de68 100644 --- a/man/gg-add.Rd +++ b/man/gg-add.Rd @@ -1,11 +1,11 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/plot-construction.R -\name{+.gg} -\alias{+.gg} +\name{add_gg} +\alias{add_gg} \alias{\%+\%} \title{Add components to a plot} \usage{ -\method{+}{gg}(e1, e2) +add_gg(e1, e2) e1 \%+\% e2 } diff --git a/man/ggplot.Rd b/man/ggplot.Rd index ecb7fe5401..2a119981e7 100644 --- a/man/ggplot.Rd +++ b/man/ggplot.Rd @@ -4,7 +4,7 @@ \alias{ggplot} \title{Create a new ggplot} \usage{ -ggplot(data = NULL, mapping = aes(), ..., environment = parent.frame()) +ggplot(data, mapping = aes(), ..., environment = parent.frame()) } \arguments{ \item{data}{Default dataset to use for plot. If not already a data.frame, diff --git a/man/ggplot_gtable.Rd b/man/gtable_ggplot.Rd similarity index 82% rename from man/ggplot_gtable.Rd rename to man/gtable_ggplot.Rd index 0d608a6622..67959e831b 100644 --- a/man/ggplot_gtable.Rd +++ b/man/gtable_ggplot.Rd @@ -1,10 +1,13 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/plot-build.R -\name{ggplot_gtable} +\name{gtable_ggplot} +\alias{gtable_ggplot} \alias{ggplot_gtable} \title{Build a plot with all the usual bits and pieces.} \usage{ -ggplot_gtable(data) +gtable_ggplot(data) + +ggplot_gtable(plot) } \arguments{ \item{data}{plot data generated by \code{\link[=ggplot_build]{ggplot_build()}}} @@ -19,6 +22,10 @@ This object is amenable to programmatic manipulation, should you want to (e.g.) make the legend box 2 cm wide, or combine multiple plots into a single display, preserving aspect ratios across the plots. } +\details{ +The \code{ggplot_gtable()} function is vestigial and the \code{gtable_ggplot()} function +should be used instead. +} \seealso{ \code{\link[=print.ggplot]{print.ggplot()}} and \code{\link[=benchplot]{benchplot()}} for for functions that contain the complete set of steps for generating diff --git a/man/is_tests.Rd b/man/is_tests.Rd index 140783b3f5..6975ff2946 100644 --- a/man/is_tests.Rd +++ b/man/is_tests.Rd @@ -1,7 +1,7 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/ggproto.R, R/aes.R, R/geom-.R, R/layer.R, -% R/coord-.R, R/facet-.R, R/stat-.R, R/theme-elements.R, R/guide-.R, -% R/guides-.R, R/margins.R, R/plot.R, R/position-.R, R/scale-.R, R/theme.R +% R/coord-.R, R/facet-.R, R/stat-.R, R/margins.R, R/theme-elements.R, +% R/guide-.R, R/guides-.R, R/plot.R, R/position-.R, R/scale-.R, R/theme.R \name{is_ggproto} \alias{is_ggproto} \alias{is.ggproto} @@ -13,10 +13,10 @@ \alias{is_facet} \alias{is.facet} \alias{is_stat} +\alias{is_margin} \alias{is_theme_element} \alias{is_guide} \alias{is_guides} -\alias{is_margin} \alias{is_tests} \alias{is_ggplot} \alias{is.ggplot} @@ -46,14 +46,16 @@ is.facet(x) # Deprecated is_stat(x) +is_margin(x) + +is_theme_element(x, type = "any") + is_theme_element(x, type = "any") is_guide(x) is_guides(x) -is_margin(x) - is_ggplot(x) is.ggplot(x) # Deprecated diff --git a/man/merge_element.Rd b/man/merge_element.Rd index ca993eeec3..3060360dc0 100644 --- a/man/merge_element.Rd +++ b/man/merge_element.Rd @@ -2,21 +2,9 @@ % Please edit documentation in R/theme.R \name{merge_element} \alias{merge_element} -\alias{merge_element.default} -\alias{merge_element.element_blank} -\alias{merge_element.element} -\alias{merge_element.margin} \title{Merge a parent element into a child element} \usage{ -merge_element(new, old) - -\method{merge_element}{default}(new, old) - -\method{merge_element}{element_blank}(new, old) - -\method{merge_element}{element}(new, old) - -\method{merge_element}{margin}(new, old) +merge_element(new, old, ...) } \arguments{ \item{new}{The child element in the theme hierarchy} diff --git a/man/print.ggplot.Rd b/man/print.ggplot.Rd index 1d558a3e9e..49b2b2dca7 100644 --- a/man/print.ggplot.Rd +++ b/man/print.ggplot.Rd @@ -2,12 +2,11 @@ % Please edit documentation in R/plot.R \name{print.ggplot} \alias{print.ggplot} -\alias{plot.ggplot} +\alias{print.ggplot2::ggplot} +\alias{plot.ggplot2::ggplot} \title{Explicitly draw plot} \usage{ -\method{print}{ggplot}(x, newpage = is.null(vp), vp = NULL, ...) - -\method{plot}{ggplot}(x, newpage = is.null(vp), vp = NULL, ...) +\method{print}{`ggplot2::ggplot`}(x, newpage = is.null(vp), vp = NULL, ...) } \arguments{ \item{x}{plot to display} diff --git a/man/register_theme_elements.Rd b/man/register_theme_elements.Rd index cdbbb25d70..0cb822e686 100644 --- a/man/register_theme_elements.Rd +++ b/man/register_theme_elements.Rd @@ -27,8 +27,8 @@ a list of named element definitions created with el_def().} \item{reset_current}{If \code{TRUE} (the default), the currently active theme is reset to the default theme.} -\item{class}{The name of the element class. Examples are "element_line" or -"element_text" or "unit", or one of the two reserved keywords "character" or +\item{class}{The name of the element class. Examples are \code{element_line} or +\code{element_text} or "unit", or one of the two reserved keywords "character" or "margin". The reserved keyword "character" implies a character or numeric vector, not a class called "character". The keyword "margin" implies a unit vector of length 4, as created by \code{\link[=margin]{margin()}}.} @@ -76,7 +76,7 @@ element inheritance relationships for the element tree. # plot panels. To do so, it registers a new theme element `ggxyz.panel.annotation` register_theme_elements( ggxyz.panel.annotation = element_text(color = "blue", hjust = 0.95, vjust = 0.05), - element_tree = list(ggxyz.panel.annotation = el_def("element_text", "text")) + element_tree = list(ggxyz.panel.annotation = el_def(element_text, "text")) ) # Now the package can define a new coord that includes a panel annotation diff --git a/man/summary.ggplot.Rd b/man/summary.ggplot.Rd deleted file mode 100644 index cf426610bc..0000000000 --- a/man/summary.ggplot.Rd +++ /dev/null @@ -1,22 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/summary.R -\name{summary.ggplot} -\alias{summary.ggplot} -\title{Displays a useful description of a ggplot object} -\usage{ -\method{summary}{ggplot}(object, ...) -} -\arguments{ -\item{object}{ggplot2 object to summarise} - -\item{...}{other arguments ignored (for compatibility with generic)} -} -\description{ -Displays a useful description of a ggplot object -} -\examples{ -p <- ggplot(mtcars, aes(mpg, wt)) + - geom_point() -summary(p) -} -\keyword{internal} diff --git a/man/theme.Rd b/man/theme.Rd index 1a435c3ba4..c1a7213da7 100644 --- a/man/theme.Rd +++ b/man/theme.Rd @@ -534,7 +534,7 @@ p4 + aes(colour = drat) + } } \seealso{ -\code{\link[=+.gg]{+.gg()}} and \link{\%+replace\%}, +\code{\link[=add_gg]{add_gg()}} and \link{\%+replace\%}, \code{\link[=element_blank]{element_blank()}}, \code{\link[=element_line]{element_line()}}, \code{\link[=element_rect]{element_rect()}}, and \code{\link[=element_text]{element_text()}} for details of the specific theme elements. diff --git a/man/ggplot_add.Rd b/man/update_ggplot.Rd similarity index 62% rename from man/ggplot_add.Rd rename to man/update_ggplot.Rd index c71d6f863e..8f2e20c22b 100644 --- a/man/ggplot_add.Rd +++ b/man/update_ggplot.Rd @@ -1,30 +1,32 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/plot-construction.R -\name{ggplot_add} +\name{update_ggplot} +\alias{update_ggplot} \alias{ggplot_add} \title{Add custom objects to ggplot} \usage{ -ggplot_add(object, plot, object_name) +update_ggplot(object, plot, ...) + +ggplot_add(object, plot, ...) } \arguments{ \item{object}{An object to add to the plot} \item{plot}{The ggplot object to add \code{object} to} - -\item{object_name}{The name of the object to add} } \value{ A modified ggplot object } \description{ This generic allows you to add your own methods for adding custom objects to -a ggplot with \link{+.gg}. +a ggplot with \link[=add_gg]{+.gg}. The \code{ggplot_add()} function is vestigial and +the \code{update_ggplot()} function should be used instead. } \details{ -Custom methods for \code{ggplot_add()} are intended to update the \code{plot} variable +Custom methods for \code{update_ggplot()} are intended to update the \code{plot} variable using information from a custom \code{object}. This can become convenient when writing extensions that don't build on the pre-existing grammar like -layers, facets, coords and themes. The \code{ggplot_add()} function is never +layers, facets, coords and themes. The \code{update_ggplot()} function is never intended to be used directly, but it is triggered when an object is added to a plot via the \code{+} operator. Please note that the full \code{plot} object is exposed at this point, which comes with the responsibility of returning @@ -32,10 +34,11 @@ the plot intact. } \examples{ # making a new method for the generic -# in this example, we apply a text element to the text theme setting -ggplot_add.element_text <- function(object, plot, object_name) { - plot + theme(text = object) -} +# in this example, we enable adding text elements +S7::method(update_ggplot, list(element_text, class_ggplot)) <- + function(object, plot, ...) { + plot + theme(text = object) + } # we can now use `+` to add our object to a plot ggplot(mpg, aes(displ, cty)) + @@ -43,6 +46,5 @@ ggplot(mpg, aes(displ, cty)) + element_text(colour = "red") # clean-up -rm(ggplot_add.element_text) } \keyword{internal} diff --git a/revdep/README.md b/revdep/README.md index e69de29bb2..41e34e7ebe 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -0,0 +1,1238 @@ +# Revdeps + +## Failed to check (24) + +|package |version |error |warning |note | +|:--------------------|:-------|:------|:-------|:----| +|[bartMan](failures.md#bartman)|0.1.1 |__+1__ | | | +|bayesdfa |1.3.4 |1 | | | +|[bmstdr](failures.md#bmstdr)|0.8.2 |__+1__ | |-2 | +|[cocktailApp](failures.md#cocktailapp)|0.2.3 |__+1__ | |-1 | +|[coda.plot](failures.md#codaplot)|0.1.9 |__+1__ | | | +|[deeptime](failures.md#deeptime)|2.1.0 |__+1__ | | | +|EcoEnsemble |1.1.2 |1 | | | +|fio |0.1.6 |1 | | | +|[ggmosaic](failures.md#ggmosaic)|0.3.3 |__+1__ | |-1 | +|[ggmulti](failures.md#ggmulti)|1.0.7 |__+1__ | | | +|[ggtern](failures.md#ggtern)|3.5.0 |__+1__ | |1 -1 | +|[inventorize](failures.md#inventorize)|1.1.1 |__+1__ | | | +|[MultiTraits](failures.md#multitraits)|0.5.0 |__+1__ | | | +|[PieGlyph](failures.md#pieglyph)|1.0.0 |__+1__ | | | +|rmsb |1.1-2 |1 | | | +|rshift |3.1.2 |1 | | | +|rstanarm |2.32.1 |1 | | | +|StatTeacherAssistant |? | | | | +|streamDAG |? | | | | +|[tidydr](failures.md#tidydr)|0.0.5 |__+1__ | | | +|[tricolore](failures.md#tricolore)|1.2.4 |__+1__ | |-1 | +|TriDimRegression |1.0.2 |1 | | | +|[webSDM](failures.md#websdm)|1.1-5 |__+1__ | | | +|[xpose](failures.md#xpose)|0.4.19 |__+1__ | | | + +## New problems (1202) + +|package |version |error |warning |note | +|:-------------------------------|:----------|:---------|:--------|:------| +|[accrualPlot](problems.md#accrualplot)|1.0.7 |__+1__ | | | +|[activAnalyzer](problems.md#activanalyzer)|2.1.2 |__+2__ | |1 | +|[actxps](problems.md#actxps) |1.6.0 |__+1__ | | | +|[adjclust](problems.md#adjclust)|0.6.10 |__+1__ | |1 | +|[adjustedCurves](problems.md#adjustedcurves)|0.11.2 |__+3__ | | | +|[adklakedata](problems.md#adklakedata)|0.6.1 |__+1__ | |1 | +|[adw](problems.md#adw) |0.4.0 |__+2__ | | | +|[AeRobiology](problems.md#aerobiology)|2.0.1 |__+1__ | | | +|[afcharts](problems.md#afcharts)|0.4.1 |__+1__ | | | +|[afex](problems.md#afex) |1.4-1 |__+1__ | | | +|[AgroR](problems.md#agror) |1.3.6 |__+1__ | | | +|[AgroReg](problems.md#agroreg) |1.2.10 |__+1__ | | | +|[AgroTech](problems.md#agrotech)|1.0.2 |__+1__ | | | +|[airGR](problems.md#airgr) |1.7.6 |__+1__ | | | +|[airt](problems.md#airt) |0.2.2 |__+2__ | | | +|[akc](problems.md#akc) |0.9.9.1 |__+1__ | | | +|[ale](problems.md#ale) |0.5.0 |__+2__ | | | +|[AlleleShift](problems.md#alleleshift)|1.1-2 |__+1__ | | | +|[alookr](problems.md#alookr) |0.3.9 |__+1__ | | | +|[AlphaPart](problems.md#alphapart)|0.9.8 |__+1__ | | | +|[AmpliconDuo](problems.md#ampliconduo)|1.1.1 |__+1__ | |1 | +|[AnalysisLin](problems.md#analysislin)|0.1.2 |__+1__ | | | +|[AnanseSeurat](problems.md#ananseseurat)|1.2.0 |__+2__ | | | +|[andurinha](problems.md#andurinha)|0.0.2 |__+1__ | | | +|[animbook](problems.md#animbook)|1.0.0 |__+1__ | | | +|[ANN2](problems.md#ann2) |2.3.4 |__+1__ | |3 | +|[anscombiser](problems.md#anscombiser)|1.1.0 |__+1__ | | | +|[APackOfTheClones](problems.md#apackoftheclones)|1.2.4 |__+3__ |1 |1 | +|[APCtools](problems.md#apctools)|1.0.4 |__+3__ | | | +|[aplot](problems.md#aplot) |0.2.5 |__+1__ | | | +|[aplotExtra](problems.md#aplotextra)|0.0.3 |__+1__ | | | +|[apm](problems.md#apm) |0.1.0 |__+2__ | | | +|[appeears](problems.md#appeears)|1.1 |__+1__ | | | +|[applicable](problems.md#applicable)|0.1.1 |__+1__ | | | +|[AQEval](problems.md#aqeval) |0.6.0 |__+1__ | | | +|[arena2r](problems.md#arena2r) |1.0.0 |__+1__ | |1 | +|[arima2](problems.md#arima2) |3.3.0 |__+1__ | | | +|[arulesViz](problems.md#arulesviz)|1.5.3 |__+2__ | | | +|[ARUtools](problems.md#arutools)|0.7.2 |__+3__ | | | +|[ASRgenomics](problems.md#asrgenomics)|1.1.4 |__+1__ | |1 | +|[assignPOP](problems.md#assignpop)|1.3.0 |__+1__ | | | +|[atime](problems.md#atime) |2025.4.1 |__+2__ | | | +|[auditor](problems.md#auditor) |1.3.5 |__+1__ | | | +|[augmentedRCBD](problems.md#augmentedrcbd)|0.1.7 |-1 |__+1__ | | +|[aum](problems.md#aum) |2024.6.19 |__+1__ | | | +|[autocogs](problems.md#autocogs)|0.1.4 |__+1__ | |1 | +|[autoplotly](problems.md#autoplotly)|0.1.4 |__+2__ | | | +|[autoReg](problems.md#autoreg) |0.3.3 |__+2__ | | | +|[autostats](problems.md#autostats)|0.4.1 |__+2__ | |1 | +|[backShift](problems.md#backshift)|0.1.4.3 |__+1__ | |1 | +|[baggr](problems.md#baggr) |0.7.8 |__+2__ | |2 | +|[bakeoff](problems.md#bakeoff) |0.2.0 |__+1__ | |1 | +|[BAS](problems.md#bas) |1.7.5 |__+1__ | | | +|[BaseSet](problems.md#baseset) |1.0.0 |__+1__ | | | +|[BasketballAnalyzeR](problems.md#basketballanalyzer)|0.8.0 |__+1__ | |1 | +|[bayefdr](problems.md#bayefdr) |0.2.1 |__+2__ | | | +|[bayes4psy](problems.md#bayes4psy)|1.2.12 |__+1__ | |2 | +|[bayesAB](problems.md#bayesab) |1.1.3 |__+3__ | |1 | +|[bayesassurance](problems.md#bayesassurance)|0.1.0 |__+1__ | | | +|[BayesCVI](problems.md#bayescvi)|1.0.1 | |__+1__ | | +|[BayesERtools](problems.md#bayesertools)|0.2.1 |__+1__ | | | +|[BayesianFactorZoo](problems.md#bayesianfactorzoo)|0.0.0.3 |__+1__ | | | +|[BayesianPlatformDesignTimeTrend](problems.md#bayesianplatformdesigntimetrend)|1.2.3 |__+1__ | |2 | +|[BayesianReasoning](problems.md#bayesianreasoning)|0.4.2 |__+2__ | | | +|[BayesMallows](problems.md#bayesmallows)|2.2.3 |__+1__ | |1 | +|[BayesMultiMode](problems.md#bayesmultimode)|0.7.3 | |__+1__ |1 | +|[bayesplot](problems.md#bayesplot)|1.12.0 |__+1__ | |1 | +|[bayespm](problems.md#bayespm) |0.2.0 |__+1__ | | | +|[bayestestR](problems.md#bayestestr)|0.15.3 |1 __+1__ | | | +|[BayesTools](problems.md#bayestools)|0.2.18 |__+1__ | | | +|[BCClong](problems.md#bcclong) |1.0.3 |__+1__ | |1 | +|[BCEA](problems.md#bcea) |2.4.7 |__+2__ | | | +|[bdsm](problems.md#bdsm) |0.2.1 |__+1__ |1 | | +|[BEAMR](problems.md#beamr) |1.1.0 |__+1__ | | | +|[behaviorchange](problems.md#behaviorchange)|0.5.5 |__+1__ | | | +|[benchr](problems.md#benchr) |0.2.5 |__+1__ | |2 | +|[besthr](problems.md#besthr) |0.3.2 |__+2__ | | | +|[betaclust](problems.md#betaclust)|1.0.4 |__+1__ | | | +|[BGGM](problems.md#bggm) |2.1.5 |__+2__ | |1 | +|[bibliometrix](problems.md#bibliometrix)|4.3.5 |__+1__ | | | +|[biclustermd](problems.md#biclustermd)|0.2.3 |__+1__ | |1 | +|[BIGL](problems.md#bigl) |1.9.3 |__+1__ | | | +|[bigsnpr](problems.md#bigsnpr) |1.12.18 |__+2__ | |1 | +|[bigstatsr](problems.md#bigstatsr)|1.6.1 |__+1__ | |1 | +|[binsegRcpp](problems.md#binsegrcpp)|2023.8.31 |__+1__ | | | +|[biometryassist](problems.md#biometryassist)|1.2.2 |__+1__ | |2 | +|[biomod2](problems.md#biomod2) |4.2-6-2 |__+1__ | | | +|[BioPred](problems.md#biopred) |1.0.2 |__+2__ | | | +|[BiostatsUHNplus](problems.md#biostatsuhnplus)|1.0.2 |__+1__ | | | +|[BioVizSeq](problems.md#biovizseq)|1.0.3 |__+1__ | | | +|[biplotEZ](problems.md#biplotez)|2.2 |__+2__ | |1 | +|[BiVariAn](problems.md#bivarian)|1.0.1 |__+2__ | | | +|[blockCV](problems.md#blockcv) |3.1-5 |__+1__ | | | +|[bnma](problems.md#bnma) |1.6.0 |__+1__ | | | +|[BNPdensity](problems.md#bnpdensity)|2023.3.8 |__+1__ | |2 | +|[boxly](problems.md#boxly) |0.1.1 |__+1__ | | | +|[BrailleR](problems.md#brailler)|1.0.2 |__+3__ | | | +|[breakDown](problems.md#breakdown)|0.2.2 |__+1__ | | | +|[breathtestcore](problems.md#breathtestcore)|0.8.9 |__+1__ | | | +|[brolgar](problems.md#brolgar) |1.0.1 |__+2__ | | | +|[broom.mixed](problems.md#broommixed)|0.2.9.6 |__+1__ | |1 | +|[bsitar](problems.md#bsitar) |0.3.2 |__+1__ | |1 | +|[bvhar](problems.md#bvhar) |2.2.2 |__+1__ | |1 | +|[CAinterprTools](problems.md#cainterprtools)|1.1.0 |__+1__ | | | +|[calibmsm](problems.md#calibmsm)|1.1.1 |__+1__ | | | +|[calmr](problems.md#calmr) |0.7.0 |__+2__ | | | +|[camcorder](problems.md#camcorder)|0.1.0 |__+1__ | |1 | +|[canvasXpress](problems.md#canvasxpress)|1.56.1 |__+1__ | | | +|[CARBayesST](problems.md#carbayesst)|4.0 |__+1__ |-1 |1 | +|[carbonr](problems.md#carbonr) |0.2.1 |__+1__ | |2 | +|[caret](problems.md#caret) |7.0-1 |__+1__ | | | +|[caretEnsemble](problems.md#caretensemble)|4.0.1 |__+3__ | | | +|[cartograflow](problems.md#cartograflow)|1.0.5 |__+1__ | | | +|[cartographr](problems.md#cartographr)|0.2.2 |__+2__ | |1 | +|[casebase](problems.md#casebase)|0.10.6 |__+2__ | | | +|[cats](problems.md#cats) |1.0.2 |__+1__ | |1 | +|[causact](problems.md#causact) |0.5.7 |__+1__ | | | +|[CausalImpact](problems.md#causalimpact)|1.3.0 |__+1__ | | | +|[CausalQueries](problems.md#causalqueries)|1.3.3 |__+1__ | |2 | +|[cellularautomata](problems.md#cellularautomata)|0.1.0 |__+2__ | | | +|[centerline](problems.md#centerline)|0.2.2 |__+2__ | | | +|[Certara.DarwinReporter](problems.md#certaradarwinreporter)|2.0.1 |__+1__ | | | +|[Certara.ModelResults](problems.md#certaramodelresults)|3.0.1 |__+1__ | | | +|[Certara.RsNLME.ModelBuilder](problems.md#certararsnlmemodelbuilder)|3.0.1 |__+1__ | | | +|[Certara.RsNLME.ModelExecutor](problems.md#certararsnlmemodelexecutor)|3.0.2 |__+1__ | | | +|[Certara.Xpose.NLME](problems.md#certaraxposenlme)|2.0.2 |__+1__ | | | +|[ceterisParibus](problems.md#ceterisparibus)|0.6 |__+1__ | | | +|[CGGP](problems.md#cggp) |1.0.4 |__+1__ | | | +|[CGPfunctions](problems.md#cgpfunctions)|0.6.3 |__+1__ | | | +|[changepoint.influence](problems.md#changepointinfluence)|1.0.2 |__+1__ | | | +|[cheem](problems.md#cheem) |0.4.0.0 |__+1__ | | | +|[chem16S](problems.md#chem16s) |1.2.0 |__+1__ | | | +|[chemodiv](problems.md#chemodiv)|0.3.0 |__+3__ | | | +|[ChemoSpec](problems.md#chemospec)|6.1.11 |__+2__ | | | +|[ChemoSpecUtils](problems.md#chemospecutils)|1.0.5 |__+1__ | | | +|[chessboard](problems.md#chessboard)|0.1 |__+2__ | | | +|[chevron](problems.md#chevron) |0.2.11 |__+3__ | | | +|[chillR](problems.md#chillr) |0.76 |__+1__ | | | +|[choroplethr](problems.md#choroplethr)|4.0.0 |__+1__ | |1 | +|[chronicle](problems.md#chronicle)|0.3 |__+2__ | |1 | +|[CINNA](problems.md#cinna) |1.2.2 |__+1__ | |1 | +|[circhelp](problems.md#circhelp)|1.1 |__+2__ | | | +|[circumplex](problems.md#circumplex)|1.0.0 |__+1__ | | | +|[CKMRpop](problems.md#ckmrpop) |0.1.3 |__+2__ | |1 | +|[classmap](problems.md#classmap)|1.2.4 |__+1__ |__+1__ |1 | +|[clifro](problems.md#clifro) |3.2-5 |__+1__ | |1 | +|[climaemet](problems.md#climaemet)|1.4.1 |__+1__ | |1 | +|[climwin](problems.md#climwin) |1.2.3 |__+1__ | | | +|[clinDataReview](problems.md#clindatareview)|1.6.2 |__+3__ | |1 | +|[clinUtils](problems.md#clinutils)|0.2.0 |__+1__ | |1 | +|[clockSim](problems.md#clocksim)|0.1.2 | |__+1__ | | +|[clugenr](problems.md#clugenr) |1.0.3 |__+1__ | | | +|[ClustAssess](problems.md#clustassess)|1.0.0 |__+1__ | |1 | +|[clustcurv](problems.md#clustcurv)|2.0.2 |__+1__ | | | +|[ClustImpute](problems.md#clustimpute)|0.2.4 |__+1__ |1 | | +|[clustNet](problems.md#clustnet)|1.2.0 |__+1__ | | | +|[clustrd](problems.md#clustrd) |1.4.0 |__+1__ | |1 | +|[clustree](problems.md#clustree)|0.5.1 |__+3__ | | | +|[clustringr](problems.md#clustringr)|1.0 |__+1__ | |2 | +|[clustTMB](problems.md#clusttmb)|0.1.0 |__+1__ | |1 | +|[cmcR](problems.md#cmcr) |0.1.11 |__+1__ | |1 | +|[cnmap](problems.md#cnmap) |0.1.0 |__+2__ | | | +|[CNVreg](problems.md#cnvreg) |1.0 |__+1__ | | | +|[coat](problems.md#coat) |0.2.0 |__+1__ | | | +|[coda4microbiome](problems.md#coda4microbiome)|0.2.4 |__+1__ | | | +|[cogmapr](problems.md#cogmapr) |0.9.3 |__+1__ | | | +|[CohortCharacteristics](problems.md#cohortcharacteristics)|0.5.1 |__+2__ | |1 | +|[CohortPlat](problems.md#cohortplat)|1.0.5 |__+2__ | | | +|[COINr](problems.md#coinr) |1.1.14 |__+2__ | | | +|[colorrepel](problems.md#colorrepel)|0.4.1 |__+1__ | | | +|[comparer](problems.md#comparer)|0.2.4 |__+1__ | |1 | +|[conquestr](problems.md#conquestr)|1.5.1 |__+2__ | | | +|[conserveR](problems.md#conserver)|1.0.4 |__+1__ | |2 | +|[constructive](problems.md#constructive)|1.1.0 |__+1__ | | | +|[ContourFunctions](problems.md#contourfunctions)|0.1.2 |__+1__ | | | +|[contsurvplot](problems.md#contsurvplot)|0.2.1 |__+3__ | | | +|[convergEU](problems.md#convergeu)|0.7.3.2 |__+1__ | |1 | +|[CooccurrenceAffinity](problems.md#cooccurrenceaffinity)|1.0 |__+1__ | |1 | +|[CoreMicrobiomeR](problems.md#coremicrobiomer)|0.1.0 |__+1__ | | | +|[correlationfunnel](problems.md#correlationfunnel)|0.2.0 |__+1__ | |1 | +|[Correlplot](problems.md#correlplot)|1.1.0 |__+2__ | | | +|[corrgrapher](problems.md#corrgrapher)|1.0.4 |__+1__ | | | +|[corrViz](problems.md#corrviz) |0.1.0 |__+2__ | |1 | +|[CoSMoS](problems.md#cosmos) |2.1.0 |__+1__ | | | +|[countfitteR](problems.md#countfitter)|1.4 |__+1__ | |1 | +|[countries](problems.md#countries)|1.2.1 |__+1__ | |1 | +|[coursekata](problems.md#coursekata)|0.18.1 |__+1__ | | | +|[covalchemy](problems.md#covalchemy)|1.0.0 |__+1__ | |1 | +|[coveffectsplot](problems.md#coveffectsplot)|1.0.6 |__+1__ | | | +|[covidcast](problems.md#covidcast)|0.5.2 |__+2__ | |1 | +|[cowplot](problems.md#cowplot) |1.1.3 |__+1__ | | | +|[Coxmos](problems.md#coxmos) |1.1.2 |__+1__ | |1 | +|[CRABS](problems.md#crabs) |1.2.0 |__+1__ | | | +|[cricketdata](problems.md#cricketdata)|0.3.0 |__+1__ | |1 | +|[crmPack](problems.md#crmpack) |1.0.6 |__+1__ |-1 | | +|[crosshap](problems.md#crosshap)|1.4.0 |__+1__ | | | +|[crosstable](problems.md#crosstable)|0.8.1 |__+1__ | | | +|[crosstalkr](problems.md#crosstalkr)|1.0.5 |__+1__ | | | +|[cry](problems.md#cry) |0.5.1 |__+2__ | |1 | +|[csmpv](problems.md#csmpv) |1.0.3 |__+1__ | |1 | +|[cspp](problems.md#cspp) |0.3.3 |__+1__ | | | +|[ctrialsgov](problems.md#ctrialsgov)|0.2.5 |__+1__ | |1 | +|[ctsmTMB](problems.md#ctsmtmb) |1.0.0 |__+2__ | |1 | +|[cubble](problems.md#cubble) |1.0.0 |__+1__ | |1 | +|[cutpointr](problems.md#cutpointr)|1.2.0 |__+1__ | | | +|[cvasi](problems.md#cvasi) |1.4.0 |__+1__ | | | +|[cvms](problems.md#cvms) |1.7.0 |__+2__ | | | +|[cylcop](problems.md#cylcop) |0.2.0 |__+1__ | |1 | +|[cystiSim](problems.md#cystisim)|0.1.0 |__+1__ | |1 | +|[CytoSimplex](problems.md#cytosimplex)|0.2.0 |__+1__ | |1 | +|[D2MCS](problems.md#d2mcs) |1.0.1 |__+1__ | | | +|[dabestr](problems.md#dabestr) |2025.3.14 |__+1__ | | | +|[daiquiri](problems.md#daiquiri)|1.1.1 |__+2__ | | | +|[DAISIE](problems.md#daisie) |4.5.0 |__+1__ | |2 | +|[DAISIEprep](problems.md#daisieprep)|1.0.0 |__+3__ | | | +|[DALEX](problems.md#dalex) |2.4.3 |__+1__ | |1 | +|[DALEXtra](problems.md#dalextra)|2.3.0 |__+1__ | | | +|[daltoolbox](problems.md#daltoolbox)|1.2.707 | |__+1__ | | +|[dampack](problems.md#dampack) |1.0.2.1000 |__+3__ | |1 | +|[dams](problems.md#dams) |0.3.0 |__+1__ | |1 | +|[dartR](problems.md#dartr) |2.9.9.5 |__+1__ | |2 | +|[dartR.base](problems.md#dartrbase)|1.0.5 |__+1__ | |1 | +|[dartR.captive](problems.md#dartrcaptive)|1.0.2 |__+1__ | | | +|[dartR.popgen](problems.md#dartrpopgen)|1.0.0 |__+1__ | | | +|[dartR.sexlinked](problems.md#dartrsexlinked)|1.0.5 |__+1__ | | | +|[DatabionicSwarm](problems.md#databionicswarm)|2.0.0 |__+1__ | |3 | +|[ddpcr](problems.md#ddpcr) |1.15.2 |__+1__ | |3 | +|[ddtlcm](problems.md#ddtlcm) |0.2.1 |__+3__ | |1 | +|[debkeepr](problems.md#debkeepr)|0.1.1 |__+1__ | |1 | +|[decisionSupport](problems.md#decisionsupport)|1.114 |__+2__ | | | +|[Deducer](problems.md#deducer) |0.9-0 | |__+1__ | | +|[deepdep](problems.md#deepdep) |0.4.3 |__+1__ | | | +|[demodelr](problems.md#demodelr)|1.0.1 |__+1__ | | | +|[dendextend](problems.md#dendextend)|1.19.0 |__+2__ | |3 | +|[DescribeDisplay](problems.md#describedisplay)|0.2.11 |__+2__ | | | +|[DEXiR](problems.md#dexir) |1.0.2 |__+1__ | | | +|[dfoliatR](problems.md#dfoliatr)|0.3.0 |__+3__ | | | +|[Dforest](problems.md#dforest) |0.4.2 |__+1__ | | | +|[diceR](problems.md#dicer) |3.0.0 |__+1__ | | | +|[diffEnrich](problems.md#diffenrich)|0.1.2 |__+1__ | | | +|[digiRhythm](problems.md#digirhythm)|2.4 |__+2__ | | | +|[DImodelsVis](problems.md#dimodelsvis)|1.0.1 |__+2__ | | | +|[directlabels](problems.md#directlabels)|2024.1.21 |__+3__ | | | +|[disaggregation](problems.md#disaggregation)|0.4.0 |__+2__ | |1 | +|[DiSCos](problems.md#discos) |0.1.1 |__+1__ | | | +|[discourseGT](problems.md#discoursegt)|1.2.0 |__+1__ | | | +|[distreg.vis](problems.md#distregvis)|1.7.5 |__+1__ | | | +|[distributions3](problems.md#distributions3)|0.2.2 |__+2__ | | | 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|__+1__ | |1 | +|[easysurv](problems.md#easysurv)|2.0.1 |__+3__ | | | +|[EbayesThresh](problems.md#ebayesthresh)|1.4-12 |__+1__ | | | +|[ebvcube](problems.md#ebvcube) |0.5.0 |__+1__ | |1 | +|[ecocbo](problems.md#ecocbo) |0.12.0 |__+3__ | | | +|[ecochange](problems.md#ecochange)|2.9.3.3 |__+1__ | | | +|[ecoCopula](problems.md#ecocopula)|1.0.2 |__+1__ | | | +|[ecolRxC](problems.md#ecolrxc) |0.1.1-10 |__+1__ | |1 | +|[economiccomplexity](problems.md#economiccomplexity)|2.0.0 |__+1__ | |1 | +|[ecpc](problems.md#ecpc) |3.1.1 |__+1__ | | | +|[EDOIF](problems.md#edoif) |0.1.4 |__+2__ | | | +|[effectplots](problems.md#effectplots)|0.2.2 |__+2__ | |1 | +|[EGAnet](problems.md#eganet) |2.3.0 |__+1__ | |1 | +|[egg](problems.md#egg) |0.4.5 |__+1__ | | | +|[EGM](problems.md#egm) |0.1.0 |__+1__ | | | +|[eHDPrep](problems.md#ehdprep) |1.3.3 |__+1__ | |1 | +|[eiCircles](problems.md#eicircles)|0.0.1-12 |__+1__ | | | +|[EIX](problems.md#eix) |1.2.0 |__+2__ | | | +|[eks](problems.md#eks) |1.1.0 |__+2__ | | | +|[EMMIXgene](problems.md#emmixgene)|0.1.4 |__+1__ | |1 | +|[EMMIXmfa](problems.md#emmixmfa)|2.0.14 |__+1__ | | | +|[ENMTools](problems.md#enmtools)|1.1.2 |__+1__ | | | +|[enrichR](problems.md#enrichr) |3.4 |__+1__ | | | +|[EntropicStatistics](problems.md#entropicstatistics)|0.1.0 |__+1__ | | | +|[EnvStats](problems.md#envstats)|3.1.0 |__+1__ | |1 | +|[epiCleanr](problems.md#epicleanr)|0.2.0 |__+1__ | |1 | +|[epiCo](problems.md#epico) |1.0.1 |__+1__ | |1 | +|[EpiForsk](problems.md#epiforsk)|0.1.1 |__+1__ | | | +|[EpiNow2](problems.md#epinow2) |1.7.1 |__+2__ | |2 | +|[epiphy](problems.md#epiphy) |0.5.0 |__+1__ | | | +|[episensr](problems.md#episensr)|2.0.0 |__+1__ | | | +|[epos](problems.md#epos) |1.1 |__+1__ | |2 | +|[EQUALSTATS](problems.md#equalstats)|0.5.0 |__+1__ | |1 | +|[equatiomatic](problems.md#equatiomatic)|0.3.6 |__+1__ | | | +|[ern](problems.md#ern) |2.1.2 |__+3__ | | | +|[errors](problems.md#errors) |0.4.3 |__+2__ |-1 | | +|[esci](problems.md#esci) |1.0.7 |__+2__ | | | 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|__+1__ | | +|[FARS](problems.md#fars) |0.2.0 |__+1__ | | | +|[fastR2](problems.md#fastr2) |1.2.4 |__+1__ | |1 | +|[FastUtils](problems.md#fastutils)|0.2.1 |__+2__ | |1 | +|[faux](problems.md#faux) |1.2.2 |__+2__ | | | +|[fChange](problems.md#fchange) |2.0.0 |__+1__ | |1 | +|[fdANOVA](problems.md#fdanova) |0.1.2 |__+1__ | | | +|[fdaPOIFD](problems.md#fdapoifd)|1.0.3 |__+1__ | |1 | +|[feasts](problems.md#feasts) |0.4.1 |__+1__ | | | +|[fec16](problems.md#fec16) |0.1.4 |__+1__ | |1 | +|[fect](problems.md#fect) |1.0.0 |__+1__ | |3 | +|[fergm](problems.md#fergm) |1.1.4 |__+1__ |1 | | +|[ferrn](problems.md#ferrn) |0.1.0 |__+1__ | | | +|[fgeo.plot](problems.md#fgeoplot)|1.1.11 |__+2__ | | | +|[FieldSimR](problems.md#fieldsimr)|1.4.0 |__+1__ | | | +|[figpatch](problems.md#figpatch)|0.3.0 |__+2__ | | | +|[finalfit](problems.md#finalfit)|1.0.8 |__+3__ | |1 | +|[finalsize](problems.md#finalsize)|0.2.1 |__+1__ | |1 | +|[finna](problems.md#finna) |0.1.1 |__+1__ | | | 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| +|[ggpage](problems.md#ggpage) |0.2.3 |__+1__ | | | +|[ggparallel](problems.md#ggparallel)|0.4.0 |__+2__ | | | +|[ggparty](problems.md#ggparty) |1.0.0 |__+3__ | |2 | +|[ggpath](problems.md#ggpath) |1.0.2 |__+2__ | | | +|[ggpicrust2](problems.md#ggpicrust2)|2.1.2 |__+1__ | | | +|[ggpie](problems.md#ggpie) |0.2.5 |__+2__ | | | +|[ggplot2.utils](problems.md#ggplot2utils)|0.3.2 |__+1__ | | | +|[ggpmisc](problems.md#ggpmisc) |0.6.1 |__+2__ | | | +|[ggPMX](problems.md#ggpmx) |1.2.11 |__+2__ | |2 | +|[ggpointdensity](problems.md#ggpointdensity)|0.2.0 |__+2__ | | | +|[ggpol](problems.md#ggpol) |0.0.7 |__+1__ | |2 | +|[ggpolar](problems.md#ggpolar) |0.2.2 |__+2__ | | | +|[ggpp](problems.md#ggpp) |0.5.8-1 |__+3__ | | | +|[ggprism](problems.md#ggprism) |1.0.6 |__+3__ | | | +|[ggpubr](problems.md#ggpubr) |0.6.0 |__+2__ | | | +|[ggpval](problems.md#ggpval) |0.2.5 |__+3__ | | | +|[ggquickeda](problems.md#ggquickeda)|0.3.1 |__+1__ | |1 | +|[ggraph](problems.md#ggraph) |2.2.1 |__+2__ | |1 | 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| +|[incidence](problems.md#incidence)|1.7.5 |__+3__ | | | +|[IncidencePrevalence](problems.md#incidenceprevalence)|1.2.0 |__+1__ | | | +|[infer](problems.md#infer) |1.0.8 |__+3__ | | | +|[inferCSN](problems.md#infercsn)|1.1.7 |__+1__ | |1 | +|[ingredients](problems.md#ingredients)|2.3.0 |__+1__ | | | +|[injurytools](problems.md#injurytools)|1.0.3 |__+1__ | | | +|[inlabru](problems.md#inlabru) |2.12.0 |__+1__ | |1 | +|[insurancerating](problems.md#insurancerating)|0.7.5 |__+1__ | | | +|[interpretCI](problems.md#interpretci)|0.1.1 |__+2__ | |1 | +|[inTextSummaryTable](problems.md#intextsummarytable)|3.3.3 |__+2__ | |1 | +|[intradayModel](problems.md#intradaymodel)|0.0.1 |__+2__ | |1 | +|[iNZightPlots](problems.md#inzightplots)|2.15.3 |__+1__ | | | +|[iNZightRegression](problems.md#inzightregression)|1.3.4 |__+1__ | | | +|[iNZightTS](problems.md#inzightts)|2.0.0 |__+1__ | |1 | +|[ipeaplot](problems.md#ipeaplot)|0.4.1 |__+1__ | | | +|[ipsRdbs](problems.md#ipsrdbs) |1.0.0 |__+1__ | |1 | 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| | +|[mizer](problems.md#mizer) |2.5.3 |__+1__ | |1 | +|[MKpower](problems.md#mkpower) |1.0 |__+1__ | | | +|[mlergm](problems.md#mlergm) |0.8 |__+1__ | | | +|[mlr3fairness](problems.md#mlr3fairness)|0.3.2 |__+1__ | |1 | +|[mlr3spatiotempcv](problems.md#mlr3spatiotempcv)|2.3.2 |__+3__ | |1 | +|[mlr3viz](problems.md#mlr3viz) |0.10.1 |__+2__ | | | +|[mnda](problems.md#mnda) |1.0.9 |__+1__ | |1 | +|[mobr](problems.md#mobr) |3.0.0 |__+2__ | | | +|[modeldb](problems.md#modeldb) |0.3.0 |__+1__ | | | +|[modeltime](problems.md#modeltime)|1.3.1 |__+2__ | | | +|[modeltime.resample](problems.md#modeltimeresample)|0.2.3 |__+2__ | |1 | +|[moderndive](problems.md#moderndive)|0.7.0 |__+1__ | |2 | +|[modgo](problems.md#modgo) |1.0.1 |__+2__ | | | +|[Momocs](problems.md#momocs) |1.4.1 |__+1__ | | | +|[moranajp](problems.md#moranajp)|0.9.7 |__+1__ | | | +|[MorphoRegions](problems.md#morphoregions)|0.1.0 |__+1__ | | | +|[mosaic](problems.md#mosaic) |1.9.1 |__+1__ |1 |3 | 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+|[OneSampleLogRankTest](problems.md#onesamplelogranktest)|0.9.2 |__+2__ | | | +|[onewaytests](problems.md#onewaytests)|3.0 |__+1__ | | | +|[opitools](problems.md#opitools)|1.8.0 |__+1__ | |1 | +|[opticskxi](problems.md#opticskxi)|1.2.1 |__+1__ |1 | | +|[ordinalsimr](problems.md#ordinalsimr)|0.2.0 |__+1__ | | | +|[ordr](problems.md#ordr) |0.1.1 |__+3__ | |2 | +|[OTclust](problems.md#otclust) |1.0.6 |__+2__ | | | +|[OutliersO3](problems.md#outlierso3)|0.6.3 |__+2__ | | | +|[oxcAAR](problems.md#oxcaar) |1.1.1 |1 __+1__ | | | +|[pacu](problems.md#pacu) |0.1.44 |__+1__ | |1 | +|[pafr](problems.md#pafr) |0.0.2 |__+3__ | |1 | +|[palette](problems.md#palette) |0.0.2 |__+1__ | | | +|[paletteer](problems.md#paletteer)|1.6.0 |__+1__ | | | +|[palettes](problems.md#palettes)|0.2.1 |__+3__ | | | +|[pander](problems.md#pander) |0.6.6 |__+1__ | | | +|[panelView](problems.md#panelview)|1.1.18 |__+1__ | | | +|[ParamHelpers](problems.md#paramhelpers)|1.14.2 |__+1__ | | | +|[paramix](problems.md#paramix) |0.0.1 |__+1__ | | | +|[partition](problems.md#partition)|0.2.2 |__+1__ | |1 | +|[partR2](problems.md#partr2) |0.9.2 |__+1__ | |1 | +|[PAsso](problems.md#passo) |0.1.10 |__+1__ | |1 | +|[patchwork](problems.md#patchwork)|1.3.0 |__+3__ | | | +|[Path.Analysis](problems.md#pathanalysis)|0.1 |__+1__ | |1 | +|[pathfindR](problems.md#pathfindr)|2.4.2 |__+3__ | | | +|[pathviewr](problems.md#pathviewr)|1.1.7 |__+1__ | | | +|[PatientLevelPrediction](problems.md#patientlevelprediction)|6.4.1 |__+1__ | | | +|[patientProfilesVis](problems.md#patientprofilesvis)|2.0.9 |1 __+1__ | |1 | +|[patternplot](problems.md#patternplot)|1.0.0 |__+1__ | |3 | +|[PCMBase](problems.md#pcmbase) |1.2.14 |__+2__ | | | +|[pcpr](problems.md#pcpr) |1.0.0 |__+1__ | | | +|[pcr](problems.md#pcr) |1.2.2 |__+1__ | | | +|[pctax](problems.md#pctax) |0.1.3 |__+1__ | |1 | +|[pcutils](problems.md#pcutils) |0.2.8 |__+1__ | | | +|[pcvr](problems.md#pcvr) |1.2.0 |__+3__ | | | +|[pdxTrees](problems.md#pdxtrees)|0.4.0 |__+1__ | |1 | 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|2 | +|[pollster](problems.md#pollster)|0.1.6 |__+1__ | | | +|[poppr](problems.md#poppr) |2.9.6 |__+1__ |1 | | +|[portvine](problems.md#portvine)|1.0.3 |__+1__ | |1 | +|[PoweREST](problems.md#powerest)|0.1.0 |__+1__ | | | +|[PPforest](problems.md#ppforest)|0.1.3 |__+1__ | |2 | +|[PPQplan](problems.md#ppqplan) |1.1.0 |__+1__ | |2 | +|[pprof](problems.md#pprof) |1.0.1 |__+1__ | |2 | +|[ppseq](problems.md#ppseq) |0.2.5 |__+2__ | |1 | +|[prcbench](problems.md#prcbench)|1.1.10 |__+3__ | | | +|[PRECAST](problems.md#precast) |1.6.6 |__+1__ | |1 | +|[precintcon](problems.md#precintcon)|2.3.0 |__+1__ | | | +|[precrec](problems.md#precrec) |0.14.5 |__+1__ | |1 | +|[predictMe](problems.md#predictme)|0.1 |__+2__ | | | +|[predictNMB](problems.md#predictnmb)|0.2.1 |__+2__ | | | +|[predint](problems.md#predint) |2.2.1 |__+1__ | | | +|[PredPsych](problems.md#predpsych)|0.4 | |__+1__ | | +|[predRupdate](problems.md#predrupdate)|0.2.0 |__+1__ | | | +|[preference](problems.md#preference)|1.1.6 |__+1__ | |1 | +|[prevR](problems.md#prevr) |5.0.0 |__+1__ | |1 | +|[priorsense](problems.md#priorsense)|1.1.0 |__+1__ | | | +|[prism](problems.md#prism) |0.2.3 |__+1__ | | | +|[ProActive](problems.md#proactive)|0.1.0 |__+2__ | | | +|[ProAE](problems.md#proae) |1.0.3 |__+1__ | | | +|[probably](problems.md#probably)|1.0.3 |__+1__ | | | +|[processmapR](problems.md#processmapr)|0.5.6 |__+1__ | | | +|[profoc](problems.md#profoc) |1.3.3 |__+1__ | |1 | +|[projmgr](problems.md#projmgr) |0.1.1 |__+1__ | | | +|[psborrow](problems.md#psborrow)|0.2.2 |__+1__ |__+1__ | | +|[psc](problems.md#psc) |1.2.0 |__+1__ | | | +|[pscore](problems.md#pscore) |0.4.0 |__+1__ |__+1__ | | +|[psycModel](problems.md#psycmodel)|0.5.0 |__+2__ | |1 | +|[psyntur](problems.md#psyntur) |0.1.0 |__+1__ | | | +|[pubh](problems.md#pubh) |2.0.0 |__+2__ | | | +|[puff](problems.md#puff) |0.1.0 |__+3__ | | | +|[purgeR](problems.md#purger) |1.8.2 |__+1__ | |1 | +|[pvaluefunctions](problems.md#pvaluefunctions)|1.6.2 |__+2__ | | | 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|__+1__ | |1 | +|[R4GoodPersonalFinances](problems.md#r4goodpersonalfinances)|0.2.0 |__+2__ | | | +|[r6qualitytools](problems.md#r6qualitytools)|1.0.1 |__+1__ | | | +|[Racmacs](problems.md#racmacs) |1.2.9 |__+1__ | |1 | +|[radiant.basics](problems.md#radiantbasics)|1.6.6 |__+1__ | | | +|[radiant.data](problems.md#radiantdata)|1.6.7 |__+1__ | | | +|[radiant.model](problems.md#radiantmodel)|1.6.7 |__+1__ | | | +|[radiant.multivariate](problems.md#radiantmultivariate)|1.6.7 |__+1__ | | | +|[Radviz](problems.md#radviz) |0.9.4 |__+2__ | |1 | +|[RamanMP](problems.md#ramanmp) |1.0 |__+1__ | |1 | +|[randomForestExplainer](problems.md#randomforestexplainer)|0.10.1 |__+3__ | |1 | +|[RandomWalker](problems.md#randomwalker)|0.3.0 |__+2__ | | | +|[RARfreq](problems.md#rarfreq) |0.1.5 |__+1__ | | | +|[rassta](problems.md#rassta) |1.0.6 |__+3__ | | | +|[rasterdiv](problems.md#rasterdiv)|0.3.6 |__+1__ | | | +|[rasterpic](problems.md#rasterpic)|0.3.0 |__+1__ | | | +|[rater](problems.md#rater) |1.3.1 |__+1__ | |3 | +|[ratlas](problems.md#ratlas) |0.1.0 |__+2__ | |1 | +|[RavenR](problems.md#ravenr) |2.2.2 |__+1__ | | | +|[RBesT](problems.md#rbest) |1.8-2 |__+1__ | |2 | +|[rBiasCorrection](problems.md#rbiascorrection)|0.3.5 |__+2__ | | | +|[rbioacc](problems.md#rbioacc) |1.2.1 |__+1__ | |2 | +|[rbiom](problems.md#rbiom) |2.2.0 |__+2__ | | | +|[RcmdrPlugin.RiskDemo](problems.md#rcmdrpluginriskdemo)|3.2 |__+1__ | | | +|[rcssci](problems.md#rcssci) |0.4.0 |__+1__ | | | +|[rddensity](problems.md#rddensity)|2.6 |__+1__ | | | +|[reappraised](problems.md#reappraised)|0.1.1 |__+1__ | | | +|[reda](problems.md#reda) |0.5.4 |__+1__ | |3 | +|[redist](problems.md#redist) |4.2.0 |__+2__ | |1 | +|[registr](problems.md#registr) |2.1.0 |__+1__ | |2 | +|[regressinator](problems.md#regressinator)|0.2.0 |__+1__ | | | +|[regtomean](problems.md#regtomean)|1.2 | |__+1__ |1 | +|[reliabilitydiag](problems.md#reliabilitydiag)|0.2.1 |__+1__ | | | +|[relliptical](problems.md#relliptical)|1.3.0 |__+1__ | |1 | 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|__+1__ | | | +|[RMixtCompUtilities](problems.md#rmixtcomputilities)|4.1.6 |__+1__ | |1 | +|[rms](problems.md#rms) |8.0-0 |__+1__ |__+1__ |2 | +|[rmweather](problems.md#rmweather)|0.2.62 |__+1__ | | | +|[RNAseqQC](problems.md#rnaseqqc)|0.2.1 |__+1__ | |1 | +|[Rnest](problems.md#rnest) |1.1 |__+1__ | | | +|[roahd](problems.md#roahd) |1.4.3 |__+1__ | |2 | +|[robCompositions](problems.md#robcompositions)|2.4.1 |__+1__ |1 __+1__ |3 | +|[robustmatrix](problems.md#robustmatrix)|0.1.4 |__+1__ | | | +|[romic](problems.md#romic) |1.1.3 |__+1__ | |1 | +|[roptions](problems.md#roptions)|1.0.3 |__+1__ | |1 | +|[rPBK](problems.md#rpbk) |0.2.4 |__+1__ |1 |3 | +|[RpeakChrom](problems.md#rpeakchrom)|1.1.0 |__+1__ | | | +|[rrr](problems.md#rrr) |1.0.0 |__+2__ | |1 | +|[rrtable](problems.md#rrtable) |0.3.0 |__+1__ | | | +|[rSDI](problems.md#rsdi) |0.2.1 |__+2__ | | | +|[rsetse](problems.md#rsetse) |0.5.0 |__+1__ | | | +|[rstanemax](problems.md#rstanemax)|0.1.9 |__+1__ | |2 | +|[RTIGER](problems.md#rtiger) |2.1.0 | |__+1__ | | +|[rTPC](problems.md#rtpc) |1.0.4 |__+1__ | | | +|[RtsEva](problems.md#rtseva) |1.0.0 |__+1__ | |1 | +|[RVenn](problems.md#rvenn) |1.1.0 |__+1__ | |1 | +|[rvinecopulib](problems.md#rvinecopulib)|0.7.2.1.0 |__+2__ | |1 | +|[RWmisc](problems.md#rwmisc) |0.1.2 |__+1__ | | | +|[Rwtss](problems.md#rwtss) |0.9.2 |__+1__ | |1 | +|[rYWAASB](problems.md#rywaasb) |0.2 |__+1__ | |1 | +|[saens](problems.md#saens) |0.1.2 |__+1__ | | | +|[sageR](problems.md#sager) |0.6.1 |__+1__ | |1 | +|[SAMprior](problems.md#samprior)|2.0.0 |__+1__ | | | +|[SangerTools](problems.md#sangertools)|1.0.2 |__+2__ | | | +|[sapfluxnetr](problems.md#sapfluxnetr)|0.1.4 |__+1__ | |1 | +|[saros](problems.md#saros) |1.5.1 |__+2__ | | | +|[scatterbar](problems.md#scatterbar)|0.1.0 |__+1__ | | | +|[scatterpie](problems.md#scatterpie)|0.2.4 |__+2__ | | | +|[scCustomize](problems.md#sccustomize)|3.0.1 |__+1__ | | | +|[scdtb](problems.md#scdtb) |0.2.0 |__+1__ | | | 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+|[seedreg](problems.md#seedreg) |1.0.3 |__+1__ | | | +|[SEI](problems.md#sei) |0.2.0 |__+2__ |-1 |1 | +|[sensitivity](problems.md#sensitivity)|1.30.1 |__+1__ | |1 | +|[SensoMineR](problems.md#sensominer)|1.27 |__+1__ | | | +|[SentimentAnalysis](problems.md#sentimentanalysis)|1.3-5 |__+1__ | |1 | +|[sentopics](problems.md#sentopics)|0.7.4 |__+3__ | |3 | +|[sephora](problems.md#sephora) |0.1.31 |__+1__ | | | +|[seqHMM](problems.md#seqhmm) |2.0.0 |__+2__ |1 |1 | +|[SerolyzeR](problems.md#serolyzer)|1.2.0 |__+3__ | | | +|[serosv](problems.md#serosv) |1.1.0 |__+2__ | |2 | +|[SetMethods](problems.md#setmethods)|4.1 |__+1__ | | | +|[Seurat](problems.md#seurat) |5.3.0 |__+2__ | |2 | +|[sffdr](problems.md#sffdr) |1.0.0 |__+1__ | | | +|[sfnetworks](problems.md#sfnetworks)|0.6.5 |__+1__ | | | +|[sglg](problems.md#sglg) |0.2.2 |__+1__ | | | +|[sgsR](problems.md#sgsr) |1.4.5 |__+1__ | | | +|[shadowtext](problems.md#shadowtext)|0.1.4 |__+1__ | | | 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| | | +|[SimplyAgree](problems.md#simplyagree)|0.2.1 |__+2__ | | | +|[singleCellHaystack](problems.md#singlecellhaystack)|1.0.2 |__+1__ | | | +|[sivirep](problems.md#sivirep) |1.0.1 |__+1__ | |1 | +|[sjPlot](problems.md#sjplot) |2.8.17 |__+1__ | | | +|[SkeletalVis](problems.md#skeletalvis)|0.1.1 |__+1__ | | | +|[skewlmm](problems.md#skewlmm) |1.1.2 |__+1__ | | | +|[skipTrack](problems.md#skiptrack)|0.1.2 |__+3__ | | | +|[smallsets](problems.md#smallsets)|2.0.0 |__+3__ | |1 | +|[SmartEDA](problems.md#smarteda)|0.3.10 |__+2__ | |2 | +|[smdi](problems.md#smdi) |0.3.1 |__+1__ | | | +|[smer](problems.md#smer) |0.0.1 |__+1__ | |2 | +|[smoothic](problems.md#smoothic)|1.2.0 |__+2__ | | | +|[smplot2](problems.md#smplot2) |0.2.5 |__+1__ | | | +|[soc.ca](problems.md#socca) |0.8.0 |__+1__ | |3 | +|[SOMbrero](problems.md#sombrero)|1.4-2 |__+1__ | | | +|[spacejamr](problems.md#spacejamr)|0.2.1 |__+2__ | | | +|[SPARRAfairness](problems.md#sparrafairness)|0.1.0.0 |__+1__ | | | 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+|[stabm](problems.md#stabm) |1.2.2 |__+1__ | | | +|[starvz](problems.md#starvz) |0.8.2 |__+1__ | |1 | +|[statebins](problems.md#statebins)|1.4.0 |__+2__ | | | +|[states](problems.md#states) |0.3.2 |__+1__ | | | +|[statgenGWAS](problems.md#statgengwas)|1.0.11 |__+1__ | |1 | +|[statgenGxE](problems.md#statgengxe)|1.0.9 |__+3__ | |1 | +|[statgenHTP](problems.md#statgenhtp)|1.0.8 |__+2__ | |2 | +|[statgenIBD](problems.md#statgenibd)|1.0.8 |__+1__ | |2 | +|[statgenSTA](problems.md#statgensta)|1.0.14 |__+3__ | |2 | +|[stats19](problems.md#stats19) |3.3.1 |__+1__ | | | +|[statVisual](problems.md#statvisual)|1.2.1 |__+2__ | |1 | +|[StratifiedMedicine](problems.md#stratifiedmedicine)|1.0.5 |__+1__ | |1 | +|[STraTUS](problems.md#stratus) |1.1.2 |__+1__ | |1 | +|[stRoke](problems.md#stroke) |24.10.1 |__+1__ | |1 | +|[subincomeR](problems.md#subincomer)|0.3.0 |__+1__ | | | +|[suddengains](problems.md#suddengains)|0.7.2 |__+2__ | |2 | +|[SuperCell](problems.md#supercell)|1.0.1 |__+1__ | |1 | 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|__+2__ | | | +|[teal.widgets](problems.md#tealwidgets)|0.4.3 |__+1__ | | | +|[telraamStats](problems.md#telraamstats)|1.1.2 |__+2__ | |1 | +|[Tendril](problems.md#tendril) |2.0.4 |__+1__ | |2 | +|[tern.mmrm](problems.md#ternmmrm)|0.3.2 |__+1__ | | | +|[TestAnaAPP](problems.md#testanaapp)|1.1.2 |__+1__ | | | +|[TestGardener](problems.md#testgardener)|3.3.5 |__+1__ | | | +|[texmex](problems.md#texmex) |2.4.9 |__+1__ | | | +|[texreg](problems.md#texreg) |1.39.4 |__+1__ |1 |2 | +|[textplot](problems.md#textplot)|0.2.2 |__+2__ | | | +|[thematic](problems.md#thematic)|0.1.6 |__+2__ | | | +|[ThermalSampleR](problems.md#thermalsampler)|0.1.2 |__+1__ | |1 | +|[tickr](problems.md#tickr) |1.0.2 |__+1__ | | | +|[tidycat](problems.md#tidycat) |0.1.2 |__+2__ | |1 | +|[tidyCDISC](problems.md#tidycdisc)|0.2.1 |__+1__ | |1 | +|[tidychangepoint](problems.md#tidychangepoint)|1.0.0 |__+2__ | | | +|[tidycomm](problems.md#tidycomm)|0.4.1 |__+2__ | | | +|[TidyDensity](problems.md#tidydensity)|1.5.0 |__+1__ | | | +|[tidyEdSurvey](problems.md#tidyedsurvey)|0.1.3 |__+1__ | | | +|[tidyfit](problems.md#tidyfit) |0.7.4 |__+1__ | | | +|[tidyHeatmap](problems.md#tidyheatmap)|1.11.6 |__+2__ | |1 | +|[tidyLPA](problems.md#tidylpa) |1.1.0 |__+1__ | |2 | +|[tidyMC](problems.md#tidymc) |1.0.0 |__+1__ | | | +|[tidypaleo](problems.md#tidypaleo)|0.1.3 |__+3__ | | | +|[tidyplots](problems.md#tidyplots)|0.2.2 |__+3__ | | | +|[tidyposterior](problems.md#tidyposterior)|1.0.1 |__+1__ | | | +|[tidysdm](problems.md#tidysdm) |1.0.0 |__+3__ | | | +|[tidyseurat](problems.md#tidyseurat)|0.8.0 |__+3__ | | | +|[tidyterra](problems.md#tidyterra)|0.7.2 |__+2__ | | | +|[timetk](problems.md#timetk) |2.9.0 |__+1__ | |1 | +|[tinyarray](problems.md#tinyarray)|2.4.3 |__+1__ | | | +|[tip](problems.md#tip) |0.1.0 |__+2__ | |1 | +|[tlars](problems.md#tlars) |1.0.1 |__+1__ | |1 | +|[tmt](problems.md#tmt) |0.3.4-0 |__+1__ | |1 | +|[tntpr](problems.md#tntpr) |1.2.1 |__+1__ | | | +|[toxEval](problems.md#toxeval) |1.4.0 |__+2__ | |1 | +|[TPMplt](problems.md#tpmplt) |0.1.6 | |__+1__ | | +|[track2KBA](problems.md#track2kba)|1.1.2 |__+1__ | | | +|[tradeoffaucdim](problems.md#tradeoffaucdim)|0.1.0 |__+1__ | |1 | +|[trajmsm](problems.md#trajmsm) |0.1.3 | |__+1__ | | +|[TransProR](problems.md#transpror)|1.0.3 |__+1__ | | | +|[traumar](problems.md#traumar) |1.1.0 |__+1__ | | | +|[TreatmentPatterns](problems.md#treatmentpatterns)|3.0.3 |__+1__ | | | +|[treefit](problems.md#treefit) |1.0.3 |__+1__ | | | +|[treeheatr](problems.md#treeheatr)|0.2.1 |__+2__ | | | +|[trelliscopejs](problems.md#trelliscopejs)|0.2.6 |__+1__ | | | +|[trending](problems.md#trending)|0.1.0 |__+1__ | | | +|[TRexSelector](problems.md#trexselector)|1.0.0 |__+1__ | | | +|[triplot](problems.md#triplot) |1.3.0 |__+2__ | |1 | +|[triptych](problems.md#triptych)|0.1.3 |__+1__ | | | +|[tsfeatures](problems.md#tsfeatures)|1.1.1 |__+1__ | | | +|[tsgc](problems.md#tsgc) |0.0 |__+1__ | | | +|[tsnet](problems.md#tsnet) |0.1.0 |__+1__ | |2 | +|[tvthemes](problems.md#tvthemes)|1.3.3 |__+1__ | | | +|[twowaytests](problems.md#twowaytests)|1.5 |__+1__ | | | +|[ubiquity](problems.md#ubiquity)|2.1.0 |__+2__ | |1 | +|[ufs](problems.md#ufs) |0.5.12 |__+1__ | | | +|[ulrb](problems.md#ulrb) |0.1.6 |__+1__ | | | +|[umiAnalyzer](problems.md#umianalyzer)|1.0.0 |__+1__ | | | +|[umx](problems.md#umx) |4.21.0 |__+2__ | |3 | +|[UnalR](problems.md#unalr) |1.0.0 |__+1__ | |2 | +|[unhcrthemes](problems.md#unhcrthemes)|0.6.3 |__+1__ | | | +|[ushr](problems.md#ushr) |0.2.3 |__+1__ | | | +|[usmap](problems.md#usmap) |0.7.1 |__+3__ | |2 | +|[utile.visuals](problems.md#utilevisuals)|0.3.3 |__+1__ | | | +|[vaccine](problems.md#vaccine) |1.3.0 |__+1__ | | | +|[vaccineff](problems.md#vaccineff)|1.0.0 |__+1__ | | | +|[valr](problems.md#valr) |0.8.3 |__+1__ | |1 | +|[vangogh](problems.md#vangogh) |0.1.1 |__+1__ | | | +|[vanquish](problems.md#vanquish)|1.0.0 | |__+1__ | | +|[VarSelLCM](problems.md#varsellcm)|2.1.3.1 |__+1__ | |1 | +|[vayr](problems.md#vayr) |1.0.0 |__+2__ | | | +|[vDiveR](problems.md#vdiver) |2.0.1 |__+1__ | |1 | +|[vecmatch](problems.md#vecmatch)|1.1.0 |__+3__ | |1 | +|[vinereg](problems.md#vinereg) |0.11.0 |__+1__ | |1 | +|[vip](problems.md#vip) |0.4.1 |__+1__ | |2 | +|[viscomp](problems.md#viscomp) |1.0.0 |__+2__ | |1 | +|[visdat](problems.md#visdat) |0.6.0 |__+1__ | | | +|[ViSiElse](problems.md#visielse)|1.2.2 |__+1__ | |2 | +|[visualpred](problems.md#visualpred)|0.1.1 | |__+1__ | | +|[visxhclust](problems.md#visxhclust)|1.1.0 |__+2__ | | | +|[vital](problems.md#vital) |1.1.0 |__+2__ | |1 | +|[vivainsights](problems.md#vivainsights)|0.6.1 |__+2__ | | | +|[vivaldi](problems.md#vivaldi) |1.0.1 |__+3__ | |1 | +|[vivid](problems.md#vivid) |0.2.9 |__+1__ | | | +|[vivo](problems.md#vivo) |0.2.1 |__+1__ | |1 | +|[VizTest](problems.md#viztest) |0.3 |__+1__ | | | +|[VLTimeCausality](problems.md#vltimecausality)|0.1.5 |__+1__ | | | +|[voiceR](problems.md#voicer) |0.1.0 |__+2__ | |1 | +|[volker](problems.md#volker) |3.1.0 |__+3__ | | | +|[voluModel](problems.md#volumodel)|0.2.2 |__+3__ | | | +|[voteogram](problems.md#voteogram)|0.3.2 |__+1__ | | | +|[vroom](problems.md#vroom) |1.6.5 |__+1__ | |2 | +|[vvshiny](problems.md#vvshiny) |0.1.1 |__+2__ | | | +|[washi](problems.md#washi) |0.2.0 |__+1__ | | | +|[whippr](problems.md#whippr) |0.1.3 |__+1__ | | | +|[widyr](problems.md#widyr) |0.1.5 |__+1__ | | | +|[wilson](problems.md#wilson) |2.4.2 |__+1__ | | | +|[windfarmGA](problems.md#windfarmga)|4.0.0 |__+1__ | | | +|[wordpredictor](problems.md#wordpredictor)|0.0.5 |1 __+2__ | | | +|[wpa](problems.md#wpa) |1.9.1 |__+2__ | | | +|[wql](problems.md#wql) |1.0.2 |__+2__ | | | +|[WRS2](problems.md#wrs2) |1.1-6 |__+1__ |-1 | | +|[WRTDStidal](problems.md#wrtdstidal)|1.1.4 |__+2__ | |1 | +|[xaringanthemer](problems.md#xaringanthemer)|0.4.3 |__+1__ | | | +|[xdvir](problems.md#xdvir) |0.1-2 |-1 __+1__ | | | +|[xkcd](problems.md#xkcd) |0.0.6 |__+1__ |1 | | +|[xpose.xtras](problems.md#xposextras)|0.0.2 |__+3__ | |2 | +|[xray](problems.md#xray) |0.2 |__+1__ | | | +|[xvm](problems.md#xvm) |0.0.2 |__+1__ | | | +|[yamlet](problems.md#yamlet) |1.2.1 |__+2__ |1 | | +|[yardstick](problems.md#yardstick)|1.3.2 |__+1__ | | | +|[ZetaSuite](problems.md#zetasuite)|1.0.1 | |__+1__ |1 | + diff --git a/revdep/cran.md b/revdep/cran.md index d521f55150..d38ccc0ffd 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,1576 +1,4139 @@ ## revdepcheck results -We checked 5478 reverse dependencies (5461 from CRAN + 17 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 5701 reverse dependencies (5700 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 347 new problems - * We failed to check 179 packages + * We saw 1202 new problems + * We failed to check 23 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* ABHgenotypeR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* accrualPlot + checking re-building of vignette outputs ... ERROR + +* activAnalyzer + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR * actxps - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* adklakedata +* adjclust + checking tests ... ERROR + +* adjustedCurves checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* adobeanalyticsr - checking whether package ‘adobeanalyticsr’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* adklakedata + checking examples ... ERROR * adw checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR * AeRobiology - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* agricolaeplotr - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* afcharts + checking re-building of vignette outputs ... ERROR -* agridat - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* afex + checking re-building of vignette outputs ... ERROR -* AnalysisLin +* AgroR checking examples ... ERROR -* animbook +* AgroReg checking examples ... ERROR -* ANN2 - checking tests ... ERROR - -* APCI - checking tests ... ERROR - -* APCtools +* AgroTech checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* applicable - checking tests ... ERROR +* airGR + checking re-building of vignette outputs ... ERROR -* ARPALData +* airt checking examples ... ERROR - checking whether package ‘ARPALData’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* arulesViz - checking whether package ‘arulesViz’ can be installed ... WARNING + checking re-building of vignette outputs ... ERROR -* asremlPlus - checking whether package ‘asremlPlus’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* akc + checking re-building of vignette outputs ... ERROR -* autocogs +* ale checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* autoplotly +* AlleleShift checking examples ... ERROR - checking tests ... ERROR - -* autoTS - checking re-building of vignette outputs ... NOTE -* backShift +* alookr checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘backShift’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* bayesAB - checking tests ... ERROR +* AlphaPart + checking examples ... ERROR -* bayesforecast - checking running R code from vignettes ... ERROR - checking whether package ‘bayesforecast’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE +* AmpliconDuo + checking examples ... ERROR -* BayesGrowth - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* AnalysisLin + checking examples ... ERROR -* BayesianMCPMod +* AnanseSeurat checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* BayesianReasoning +* andurinha checking tests ... ERROR -* BayesMallows - checking tests ... ERROR +* animbook + checking examples ... ERROR -* bayesplot +* ANN2 checking tests ... ERROR -* BCEA +* anscombiser + checking examples ... ERROR + +* APackOfTheClones checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘BCEA’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* BEAMR +* APCtools checking examples ... ERROR - checking whether package ‘BEAMR’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* beastt +* aplot checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* biclust +* aplotExtra checking examples ... ERROR - checking whether package ‘biclust’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* biclustermd - checking tests ... ERROR +* apm + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* biodosetools - checking tests ... ERROR +* appeears + checking re-building of vignette outputs ... ERROR -* boxly +* applicable checking tests ... ERROR -* brolgar +* AQEval checking examples ... ERROR -* cartograflow +* arena2r + checking tests ... ERROR + +* arima2 checking examples ... ERROR -* cats +* arulesViz checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* CausalImpact +* ARUtools checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘CausalImpact’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE - -* celltrackR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* cellularautomata - checking running R code from vignettes ... ERROR +* ASRgenomics + checking tests ... ERROR -* CensMFM - checking whether package ‘CensMFM’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* assignPOP + checking tests ... ERROR -* CFO +* atime checking examples ... ERROR - checking whether package ‘CFO’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* changepoint.geo +* auditor checking tests ... ERROR -* cheem +* augmentedRCBD + checking re-building of vignette outputs ... WARNING + +* aum + checking re-building of vignette outputs ... ERROR + +* autocogs checking tests ... ERROR -* chillR +* autoplotly checking examples ... ERROR - checking whether package ‘chillR’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking tests ... ERROR -* chronicle +* autoReg checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* cjoint +* autostats checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘cjoint’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* clickstream - checking whether package ‘clickstream’ can be installed ... WARNING +* backShift + checking re-building of vignette outputs ... ERROR -* clinDataReview +* baggr checking examples ... ERROR checking tests ... ERROR - checking re-building of vignette outputs ... NOTE -* clinDR +* bakeoff checking examples ... ERROR -* clinUtils - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* BAS + checking re-building of vignette outputs ... ERROR -* CLONETv2 - checking whether package ‘CLONETv2’ can be installed ... WARNING +* BaseSet + checking re-building of vignette outputs ... ERROR -* ClusROC +* BasketballAnalyzeR checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘ClusROC’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* clustcurv - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* bayefdr + checking examples ... ERROR + checking tests ... ERROR -* clustMD - checking whether package ‘clustMD’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* bayes4psy + checking re-building of vignette outputs ... ERROR -* cnmap +* bayesAB checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* codaredistlm - checking examples ... ERROR +* bayesassurance + checking tests ... ERROR -* codez - checking whether package ‘codez’ can be installed ... WARNING +* BayesCVI + checking whether package ‘BayesCVI’ can be installed ... WARNING -* CohortPlat - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* BayesERtools + checking tests ... ERROR -* colorrepel +* BayesianFactorZoo checking examples ... ERROR -* CoreMicrobiomeR - checking examples ... ERROR +* BayesianPlatformDesignTimeTrend + checking re-building of vignette outputs ... ERROR -* correlationfunnel +* BayesianReasoning checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* corrViz - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* BayesMallows + checking tests ... ERROR -* CoSMoS - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* BayesMultiMode + checking whether package ‘BayesMultiMode’ can be installed ... WARNING -* countfitteR +* bayesplot checking tests ... ERROR -* covidcast - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* bayespm + checking examples ... ERROR -* creditmodel +* bayestestR checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘creditmodel’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* cricketr - checking whether package ‘cricketr’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* BayesTools + checking examples ... ERROR -* crosshap +* BCClong checking examples ... ERROR -* CRTgeeDR - checking whether package ‘CRTgeeDR’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* BCEA + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* ctrialsgov +* bdsm checking tests ... ERROR -* cubble - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* DAISIE +* BEAMR checking examples ... ERROR -* DAISIEprep +* behaviorchange + checking re-building of vignette outputs ... ERROR + +* benchr checking tests ... ERROR -* daltoolbox +* besthr checking examples ... ERROR - checking whether package ‘daltoolbox’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* dawaR - checking examples ... ERROR +* betaclust + checking re-building of vignette outputs ... ERROR -* DDPNA +* BGGM checking examples ... ERROR - checking whether package ‘DDPNA’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* Deducer +* bibliometrix checking examples ... ERROR - checking whether package ‘Deducer’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* deeptime - checking examples ... ERROR +* biclustermd checking tests ... ERROR -* desplot - checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘desplot’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE +* BIGL + checking re-building of vignette outputs ... ERROR -* diceR +* bigsnpr checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* directlabels +* bigstatsr checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* distributional +* binsegRcpp checking examples ... ERROR -* dittoViz - checking examples ... ERROR +* biometryassist checking tests ... ERROR -* divent +* biomod2 checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* doBy - checking whether package ‘doBy’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* DoseFinding +* BioPred checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘DoseFinding’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* dotsViolin +* BiostatsUHNplus checking examples ... ERROR -* dr4pl +* BioVizSeq checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘dr4pl’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* DRomics +* biplotEZ checking examples ... ERROR - checking whether package ‘DRomics’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE - -* drpop - checking whether package ‘drpop’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* duke +* BiVariAn + checking examples ... ERROR checking tests ... ERROR -* dymo - checking whether package ‘dymo’ can be installed ... WARNING +* blockCV + checking tests ... ERROR -* dynr - checking whether package ‘dynr’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* bnma + checking re-building of vignette outputs ... ERROR -* easysurv +* BNPdensity checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* EGM +* boxly checking tests ... ERROR -* entropart +* BrailleR checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* epiCleanr - checking examples ... ERROR +* breakDown + checking tests ... ERROR -* epiphy - checking examples ... ERROR +* breathtestcore + checking tests ... ERROR -* EQUALSTATS +* brolgar checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* esci +* broom.mixed + checking re-building of vignette outputs ... ERROR + +* bsitar + checking re-building of vignette outputs ... ERROR + +* bvhar + checking re-building of vignette outputs ... ERROR + +* CAinterprTools checking examples ... ERROR + +* calibmsm checking tests ... ERROR -* evalITR - checking re-building of vignette outputs ... NOTE +* calmr + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* eventstudyr +* camcorder checking tests ... ERROR -* expirest +* canvasXpress checking tests ... ERROR -* explainer - checking examples ... ERROR +* CARBayesST + checking re-building of vignette outputs ... ERROR -* ezEDA +* carbonr checking tests ... ERROR -* fable.prophet - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* caret + checking re-building of vignette outputs ... ERROR -* fabletools +* caretEnsemble checking examples ... ERROR checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* fairmodels +* cartograflow + checking examples ... ERROR + +* cartographr + checking examples ... ERROR checking tests ... ERROR -* FCPS +* casebase checking examples ... ERROR - checking whether package ‘FCPS’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* fdANOVA +* cats checking examples ... ERROR -* fddm - checking running R code from vignettes ... ERROR +* causact + checking tests ... ERROR -* feasts +* CausalImpact checking tests ... ERROR -* ffp +* CausalQueries checking examples ... ERROR -* fido +* cellularautomata + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* centerline checking examples ... ERROR checking tests ... ERROR -* FielDHub - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* Certara.DarwinReporter + checking tests ... ERROR -* figuRes2 - checking examples ... ERROR - checking running R code from vignettes ... ERROR +* Certara.ModelResults + checking tests ... ERROR -* flexsurv +* Certara.RsNLME.ModelBuilder checking tests ... ERROR - checking running R code from vignettes ... ERROR -* flipr - checking re-building of vignette outputs ... NOTE +* Certara.RsNLME.ModelExecutor + checking tests ... ERROR -* forestmodel +* Certara.Xpose.NLME checking examples ... ERROR - checking whether package ‘forestmodel’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* frailtyEM - checking examples ... ERROR +* ceterisParibus + checking tests ... ERROR + +* CGGP + checking tests ... ERROR + +* CGPfunctions + checking tests ... ERROR + +* changepoint.influence + checking tests ... ERROR + +* cheem + checking tests ... ERROR + +* chem16S + checking re-building of vignette outputs ... ERROR + +* chemodiv + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* ChemoSpec + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* ChemoSpecUtils + checking examples ... ERROR + +* chessboard + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* chevron + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* chillR + checking examples ... ERROR + +* choroplethr + checking examples ... ERROR + +* chronicle + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* CINNA + checking re-building of vignette outputs ... ERROR + +* circhelp + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* circumplex + checking tests ... ERROR + +* CKMRpop + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* classmap + checking examples ... ERROR + checking whether package ‘classmap’ can be installed ... WARNING + +* clifro + checking tests ... ERROR + +* climaemet + checking examples ... ERROR + +* climwin + checking tests ... ERROR + +* clinDataReview + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* clinUtils + checking re-building of vignette outputs ... ERROR + +* clockSim + checking whether package ‘clockSim’ can be installed ... WARNING + +* clugenr + checking re-building of vignette outputs ... ERROR + +* ClustAssess + checking examples ... ERROR + +* clustcurv + checking re-building of vignette outputs ... ERROR + +* ClustImpute + checking tests ... ERROR + +* clustNet + checking re-building of vignette outputs ... ERROR + +* clustrd + checking examples ... ERROR + +* clustree + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* clustringr + checking examples ... ERROR + +* clustTMB + checking re-building of vignette outputs ... ERROR + +* cmcR + checking tests ... ERROR + +* cnmap + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* CNVreg + checking re-building of vignette outputs ... ERROR + +* coat + checking examples ... ERROR + +* coda4microbiome + checking examples ... ERROR + +* cogmapr + checking examples ... ERROR + +* CohortCharacteristics + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* CohortPlat + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* COINr + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* colorrepel + checking examples ... ERROR + +* comparer + checking tests ... ERROR + +* conquestr + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* conserveR + checking examples ... ERROR + +* constructive + checking tests ... ERROR + +* ContourFunctions + checking tests ... ERROR + +* contsurvplot + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* convergEU + checking tests ... ERROR + +* CooccurrenceAffinity + checking examples ... ERROR + +* CoreMicrobiomeR + checking examples ... ERROR + +* correlationfunnel + checking tests ... ERROR + +* Correlplot + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* corrgrapher + checking tests ... ERROR + +* corrViz + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* CoSMoS + checking re-building of vignette outputs ... ERROR + +* countfitteR + checking tests ... ERROR + +* countries + checking tests ... ERROR + +* coursekata + checking tests ... ERROR + +* covalchemy + checking examples ... ERROR + +* coveffectsplot + checking re-building of vignette outputs ... ERROR + +* covidcast + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* cowplot + checking tests ... ERROR + +* Coxmos + checking examples ... ERROR + +* CRABS + checking examples ... ERROR + +* cricketdata + checking re-building of vignette outputs ... ERROR + +* crmPack + checking re-building of vignette outputs ... ERROR + +* crosshap + checking tests ... ERROR + +* crosstable + checking examples ... ERROR + +* crosstalkr + checking re-building of vignette outputs ... ERROR + +* cry + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* csmpv + checking re-building of vignette outputs ... ERROR + +* cspp + checking re-building of vignette outputs ... ERROR + +* ctrialsgov + checking tests ... ERROR + +* ctsmTMB + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* cubble + checking re-building of vignette outputs ... ERROR + +* cutpointr + checking tests ... ERROR + +* cvasi + checking re-building of vignette outputs ... ERROR + +* cvms + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* cylcop + checking examples ... ERROR + +* cystiSim + checking examples ... ERROR + +* CytoSimplex + checking re-building of vignette outputs ... ERROR + +* D2MCS + checking tests ... ERROR + +* dabestr + checking tests ... ERROR + +* daiquiri + checking tests ... 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ERROR + +* GeneSelectR + checking tests ... ERROR + +* geneSLOPE + checking whether package ‘geneSLOPE’ can be installed ... WARNING + +* geofacet + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* geofi + checking re-building of vignette outputs ... ERROR + +* geoheatmap + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* geomtextpath + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* geoprofiler + checking re-building of vignette outputs ... ERROR + +* GET + checking examples ... ERROR + +* gfoRmulaICE + checking tests ... ERROR + +* gg.gap + checking examples ... ERROR + +* gg1d + checking examples ... ERROR + checking tests ... ERROR + +* ggalign + checking examples ... ERROR + checking tests ... ERROR + checking Rd cross-references ... WARNING + checking for code/documentation mismatches ... 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ERROR + +* ggokabeito + checking tests ... ERROR + +* ggpackets + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* ggpage + checking re-building of vignette outputs ... ERROR + +* ggparallel + checking examples ... ERROR + checking tests ... ERROR + +* ggparty + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* ggpath + checking examples ... ERROR + checking tests ... ERROR + +* ggpicrust2 + checking examples ... ERROR + +* ggpie + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* ggplot2.utils + checking tests ... ERROR + +* ggpmisc + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* ggPMX + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* ggpointdensity + checking examples ... ERROR + checking tests ... ERROR + +* ggpol + checking examples ... 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ERROR + +* GrowthCurveME + checking tests ... ERROR + +* GRShiny + checking tests ... ERROR + +* grwat + checking tests ... ERROR + +* gsaot + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* GseaVis + checking examples ... ERROR + +* guideR + checking examples ... ERROR + checking tests ... ERROR + +* GWlasso + checking examples ... ERROR + +* HaDeX + checking tests ... ERROR + +* hahmmr + checking examples ... ERROR + +* HaploCatcher + checking re-building of vignette outputs ... ERROR + +* harmony + checking re-building of vignette outputs ... ERROR + +* hatchR + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* healthyR + checking re-building of vignette outputs ... ERROR + +* healthyR.ai + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* healthyR.ts + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* heatmaply + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* heplots + checking re-building of vignette outputs ... ERROR + +* hermiter + checking re-building of vignette outputs ... ERROR + +* hesim + checking tests ... ERROR + +* heumilkr + checking re-building of vignette outputs ... ERROR + +* hhmR + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* hidecan + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* highlightr + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* hmer + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* hmsidwR + checking re-building of vignette outputs ... ERROR + +* hrbrthemes + checking tests ... ERROR + +* hstats + checking examples ... ERROR + +* HTT + checking examples ... 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ERROR + +* idopNetwork + checking re-building of vignette outputs ... ERROR + +* iglu + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* ImHD + checking whether package ‘ImHD’ can be installed ... WARNING + +* iml + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* immunarch + checking examples ... ERROR + +* implicitMeasures + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* imputeTS + checking examples ... ERROR + checking tests ... ERROR + +* imsig + checking examples ... ERROR + +* incidence + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* IncidencePrevalence + checking re-building of vignette outputs ... ERROR + +* infer + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* inferCSN + checking examples ... ERROR + +* ingredients + checking tests ... ERROR + +* injurytools + checking re-building of vignette outputs ... ERROR + +* inlabru + checking examples ... ERROR + +* insurancerating + checking examples ... ERROR + +* interpretCI + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* inTextSummaryTable + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* intradayModel + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* iNZightPlots + checking tests ... ERROR + +* iNZightRegression + checking examples ... ERROR + +* iNZightTS + checking tests ... ERROR + +* ipeaplot + checking examples ... ERROR + +* ipsRdbs + checking re-building of vignette outputs ... ERROR + +* IPV + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* iRfcb + checking tests ... ERROR + +* IRon + checking examples ... ERROR + +* isoorbi + checking tests ... 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ERROR + checking re-building of vignette outputs ... ERROR + +* lgpr + checking tests ... ERROR + +* LightLogR + checking examples ... ERROR + checking tests ... ERROR + +* likelihoodTools + checking tests ... ERROR + +* lionfish + checking re-building of vignette outputs ... ERROR + +* listdown + checking tests ... ERROR + +* LMD + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* lmls + checking re-building of vignette outputs ... ERROR + +* lnmixsurv + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* LongDat + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* longevity + checking examples ... ERROR + checking tests ... ERROR + +* LorenzRegression + checking examples ... ERROR + +* LorMe + checking examples ... ERROR + +* lpdensity + checking examples ... ERROR + +* lphom + checking examples ... ERROR + +* lspartition + checking examples ... 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ERROR + checking re-building of vignette outputs ... ERROR + +* MASSExtra + checking re-building of vignette outputs ... ERROR + +* maths.genealogy + checking re-building of vignette outputs ... ERROR + +* matsindf + checking re-building of vignette outputs ... ERROR + +* MaxWiK + checking re-building of vignette outputs ... ERROR + +* MBMethPred + checking tests ... ERROR + +* MBNMAdose + checking re-building of vignette outputs ... ERROR + +* MBNMAtime + checking re-building of vignette outputs ... ERROR + +* mcp + checking examples ... ERROR + checking tests ... ERROR + +* mcradds + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* mcStats + checking tests ... ERROR + +* MDDC + checking tests ... ERROR + +* MedLEA + checking re-building of vignette outputs ... ERROR + +* meme + checking re-building of vignette outputs ... ERROR + +* MendelianRandomization + checking examples ... ERROR + +* messi + checking examples ... 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ERROR + +* MorphoRegions + checking re-building of vignette outputs ... ERROR + +* mosaic + checking examples ... ERROR + +* mosaicCalc + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* mosaicData + checking examples ... ERROR + +* motifr + checking examples ... ERROR + +* mpactr + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* mpmsim + checking re-building of vignette outputs ... ERROR + +* MPTmultiverse + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* mrgsim.sa + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* MRZero + checking examples ... ERROR + +* MSCMT + checking re-building of vignette outputs ... ERROR + +* mshap + checking tests ... ERROR + +* mstate + checking examples ... ERROR + +* mtdesign + checking tests ... ERROR + +* mulea + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* mulgar + checking examples ... ERROR + +* multid + checking examples ... ERROR + +* multilandr + checking examples ... ERROR + +* multilevelPSA + checking re-building of vignette outputs ... ERROR + +* multimedia + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* multiplestressR + checking examples ... ERROR + checking tests ... ERROR + +* munsell + checking examples ... ERROR + +* mverse + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* mvgam + checking examples ... ERROR + +* mvinfluence + checking re-building of vignette outputs ... ERROR + +* mvMAPIT + checking re-building of vignette outputs ... ERROR + +* MVNtestchar + checking re-building of vignette outputs ... ERROR + +* mxfda + checking tests ... ERROR + +* mxnorm + checking tests ... ERROR + +* myClim + checking examples ... ERROR + checking tests ... ERROR + +* NAIR + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* NatParksPalettes + checking examples ... ERROR + +* neatmaps + checking examples ... ERROR + +* neatStats + checking examples ... ERROR + +* netcom + checking re-building of vignette outputs ... ERROR + +* netplot + checking re-building of vignette outputs ... ERROR + +* netropy + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* NetworkExtinction + checking re-building of vignette outputs ... ERROR + +* NeuralNetTools + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* NeuralSens + checking examples ... ERROR + +* neuroUp + checking tests ... ERROR + +* nflplotR + checking examples ... ERROR + +* NHSRplotthedots + checking tests ... ERROR + +* nic + checking re-building of vignette outputs ... ERROR + +* nichetools + checking re-building of vignette outputs ... ERROR + +* NiLeDAM + checking tests ... ERROR + +* NIMAA + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* nlmixr2plot + checking tests ... ERROR + +* NMF + checking examples ... ERROR + +* nmrrr + checking tests ... ERROR + +* noisemodel + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* nonmem2R + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* normfluodbf + checking tests ... ERROR + +* NPflow + checking examples ... ERROR + +* nphRCT + checking re-building of vignette outputs ... ERROR + +* nprobust + checking examples ... ERROR + +* numbat + checking examples ... ERROR + +* nuts + checking re-building of vignette outputs ... ERROR + +* nzelect + checking re-building of vignette outputs ... ERROR + +* nzilbb.vowels + checking examples ... ERROR + +* OBIC + checking re-building of vignette outputs ... ERROR + +* occCite + checking tests ... ERROR + +* oddsratio + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* officer + checking examples ... ERROR + checking tests ... ERROR + +* ofpetrial + checking examples ... ERROR + +* ogrdbstats + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* OlinkAnalyze + checking re-building of vignette outputs ... ERROR + +* OmicNavigator + checking tests ... ERROR + +* OmopSketch + checking re-building of vignette outputs ... ERROR + +* onbrand + checking re-building of vignette outputs ... ERROR + +* oncomsm + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* OneSampleLogRankTest + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* onewaytests + checking examples ... ERROR + +* opitools + checking examples ... ERROR + +* opticskxi + checking tests ... ERROR + +* ordinalsimr + checking tests ... ERROR + +* ordr + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* OTclust + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* OutliersO3 + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* oxcAAR + checking tests ... ERROR + +* pacu + checking re-building of vignette outputs ... ERROR + +* pafr + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* palette + checking tests ... ERROR + +* paletteer + checking tests ... ERROR + +* palettes + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* pander + checking re-building of vignette outputs ... ERROR + +* panelView + checking examples ... ERROR + +* ParamHelpers + checking tests ... ERROR + +* paramix + checking re-building of vignette outputs ... ERROR + +* partition + checking tests ... ERROR + +* partR2 + checking re-building of vignette outputs ... ERROR + +* PAsso + checking examples ... ERROR + +* patchwork + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* Path.Analysis + checking re-building of vignette outputs ... ERROR + +* pathfindR + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* pathviewr + checking tests ... ERROR + +* PatientLevelPrediction + checking examples ... ERROR + +* patientProfilesVis + checking re-building of vignette outputs ... ERROR + +* patternplot + checking examples ... ERROR + +* PCMBase + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* pcpr + checking re-building of vignette outputs ... ERROR + +* pcr + checking tests ... ERROR + +* pctax + checking examples ... ERROR + +* pcutils + checking examples ... ERROR + +* pcvr + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* pdxTrees + checking re-building of vignette outputs ... ERROR + +* pedbp + checking tests ... ERROR + +* penaltyLearning + checking tests ... ERROR + +* PepMapViz + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* personalized + checking tests ... ERROR + +* pGRN + checking examples ... ERROR + +* PHENTHAUproc + checking re-building of vignette outputs ... ERROR + +* photobiologyFilters + checking re-building of vignette outputs ... ERROR + +* photobiologyInOut + checking re-building of vignette outputs ... ERROR + +* photobiologyLamps + checking re-building of vignette outputs ... ERROR + +* photobiologyPlants + checking re-building of vignette outputs ... ERROR + +* photobiologySensors + checking re-building of vignette outputs ... ERROR + +* phylepic + checking re-building of vignette outputs ... ERROR + +* phylopath + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* phylosem + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* phyloseqGraphTest + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* plantTracker + checking re-building of vignette outputs ... ERROR + +* Plasmidprofiler + checking examples ... ERROR + +* Platypus + checking examples ... ERROR + +* PlayerChart + checking examples ... ERROR + +* PLEXI + checking examples ... ERROR + +* PLMIX + checking examples ... ERROR + +* plotcli + checking re-building of vignette outputs ... ERROR + +* plotdap + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* plotDK + checking tests ... ERROR + +* PlotFTIR + checking examples ... ERROR + checking tests ... ERROR + +* plothelper + checking examples ... ERROR + +* plotly + checking examples ... ERROR + checking tests ... ERROR + +* plotor + checking tests ... ERROR + +* plotROC + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* plotscaper + checking re-building of vignette outputs ... ERROR + +* plotthis + checking examples ... ERROR + +* pmartR + checking examples ... ERROR + checking tests ... ERROR + +* pmxTools + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* pollster + checking re-building of vignette outputs ... ERROR + +* poppr + checking examples ... ERROR + +* portvine + checking re-building of vignette outputs ... ERROR + +* PoweREST + checking examples ... ERROR + +* PPforest + checking re-building of vignette outputs ... ERROR + +* PPQplan + checking re-building of vignette outputs ... ERROR + +* pprof + checking examples ... ERROR + +* ppseq + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* prcbench + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* PRECAST + checking examples ... ERROR + +* precintcon + checking examples ... ERROR + +* precrec + checking re-building of vignette outputs ... ERROR + +* predictMe + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* predictNMB + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* predint + checking tests ... ERROR + +* PredPsych + checking whether package ‘PredPsych’ can be installed ... WARNING + +* predRupdate + checking tests ... ERROR + +* preference + checking tests ... ERROR + +* prevR + checking re-building of vignette outputs ... ERROR + +* priorsense + checking tests ... ERROR + +* prism + checking tests ... ERROR + +* ProActive + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* ProAE + checking re-building of vignette outputs ... ERROR + +* probably + checking tests ... ERROR + +* processmapR + checking tests ... ERROR + +* profoc + checking re-building of vignette outputs ... ERROR + +* projmgr + checking tests ... ERROR + +* psborrow + checking tests ... ERROR + checking whether package ‘psborrow’ can be installed ... WARNING + +* psc + checking re-building of vignette outputs ... ERROR + +* pscore + checking tests ... ERROR + checking whether package ‘pscore’ can be installed ... WARNING + +* psycModel + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* psyntur + checking examples ... ERROR + +* pubh + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* puff + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* purgeR + checking re-building of vignette outputs ... ERROR + +* pvaluefunctions + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* PvSTATEM + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* qacBase + checking examples ... ERROR + +* qad + checking tests ... ERROR + +* qbinplots + checking examples ... ERROR + +* qdap + checking tests ... ERROR + +* qgcompint + checking examples ... ERROR + +* qicharts2 + checking examples ... ERROR + +* qlifetable + checking examples ... ERROR + +* quanteda.textplots + checking tests ... ERROR + +* quantities + checking re-building of vignette outputs ... ERROR + +* QuantNorm + checking examples ... ERROR + +* quickPlot + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* quickpsy + checking examples ... ERROR + +* quickReg + checking re-building of vignette outputs ... ERROR + +* QurvE + checking examples ... ERROR + +* r2dii.plot + checking tests ... ERROR + +* r2pptx + checking re-building of vignette outputs ... ERROR + +* R2sample + checking re-building of vignette outputs ... ERROR + +* R4GoodPersonalFinances + checking examples ... ERROR + checking tests ... ERROR + +* r6qualitytools + checking examples ... ERROR + +* Racmacs + checking tests ... ERROR + +* radiant.basics + checking examples ... ERROR + +* radiant.data + checking examples ... ERROR + +* radiant.model + checking examples ... ERROR + +* radiant.multivariate + checking examples ... ERROR + +* Radviz + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* RamanMP + checking examples ... ERROR + +* randomForestExplainer + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* RandomWalker + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* RARfreq + checking examples ... ERROR + +* rassta + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* rasterdiv + checking re-building of vignette outputs ... ERROR + +* rasterpic + checking re-building of vignette outputs ... ERROR + +* rater + checking tests ... ERROR + +* ratlas + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* RavenR + checking examples ... ERROR + +* RBesT + checking examples ... ERROR + +* rBiasCorrection + checking examples ... ERROR + checking tests ... ERROR + +* rbioacc + checking tests ... ERROR + +* rbiom + checking examples ... ERROR + checking tests ... ERROR + +* RcmdrPlugin.RiskDemo + checking examples ... ERROR + +* rcssci + checking examples ... ERROR + +* rddensity + checking examples ... ERROR + +* reappraised + checking re-building of vignette outputs ... ERROR + +* reda + checking tests ... ERROR + +* redist + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* registr + checking re-building of vignette outputs ... ERROR + +* regressinator + checking re-building of vignette outputs ... ERROR + +* regtomean + checking whether package ‘regtomean’ can be installed ... WARNING + +* reliabilitydiag + checking examples ... ERROR + +* relliptical + checking examples ... ERROR + +* rempsyc + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* reporter + checking examples ... ERROR + checking tests ... ERROR + +* reportRmd + checking examples ... ERROR + +* reReg + checking examples ... ERROR + +* reservr + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* ResIN + checking re-building of vignette outputs ... ERROR + +* RestoreNet + checking examples ... ERROR + +* ReturnCurves + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* RevGadgets + checking tests ... ERROR + +* rfishdraw + checking re-building of vignette outputs ... ERROR + +* RGCCA + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* rhierbaps + checking re-building of vignette outputs ... ERROR + +* ridgetorus + checking examples ... ERROR + +* rifreg + checking tests ... ERROR + +* RItools + checking tests ... ERROR + +* rLakeHabitat + checking examples ... ERROR + checking tests ... ERROR + +* rmcorr + checking re-building of vignette outputs ... ERROR + +* RMixtComp + checking examples ... ERROR + +* RMixtCompUtilities + checking examples ... ERROR + +* rms + checking examples ... ERROR + checking for code/documentation mismatches ... WARNING + +* rmweather + checking tests ... ERROR + +* RNAseqQC + checking re-building of vignette outputs ... ERROR + +* Rnest + checking examples ... ERROR + +* roahd + checking examples ... ERROR + +* robCompositions + checking examples ... ERROR + checking whether package ‘robCompositions’ can be installed ... WARNING + +* robustmatrix + checking re-building of vignette outputs ... ERROR + +* romic + checking tests ... ERROR + +* roptions + checking examples ... ERROR + +* rPBK + checking tests ... ERROR + +* RpeakChrom + checking examples ... ERROR + +* rrr + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* rrtable + checking examples ... ERROR + +* rSDI + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* rsetse + checking re-building of vignette outputs ... ERROR + +* rstanemax + checking tests ... ERROR + +* RTIGER + checking whether package ‘RTIGER’ can be installed ... WARNING + +* rTPC + checking re-building of vignette outputs ... ERROR + +* RtsEva + checking examples ... ERROR + +* RVenn + checking tests ... ERROR + +* rvinecopulib + checking examples ... ERROR + checking tests ... ERROR + +* RWmisc + checking tests ... ERROR + +* Rwtss + checking tests ... ERROR + +* rYWAASB + checking re-building of vignette outputs ... ERROR -* gapmap +* saens checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* gapminder +* sageR checking examples ... ERROR -* GEInter - checking whether package ‘GEInter’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* SAMprior + checking examples ... ERROR -* geoheatmap - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* SangerTools + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* geomtextpath +* sapfluxnetr + checking tests ... ERROR + +* saros checking examples ... ERROR checking tests ... ERROR -* ggalign - checking for code/documentation mismatches ... WARNING +* scatterbar + checking re-building of vignette outputs ... ERROR -* GGally - checking tests ... ERROR +* scatterpie + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* gganimate +* scCustomize + checking examples ... ERROR + +* scdtb checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* ggblanket +* scGate checking examples ... ERROR -* ggdark - checking examples ... ERROR +* schtools + checking re-building of vignette outputs ... ERROR + +* scico checking tests ... ERROR -* ggdemetra - checking whether package ‘ggdemetra’ can be installed ... WARNING +* SCIntRuler + checking re-building of vignette outputs ... ERROR -* ggdist +* scistreer checking examples ... ERROR - checking tests ... ERROR - checking re-building of vignette outputs ... NOTE -* ggedit +* scoringutils checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* ggESDA +* SCOUTer checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* ggfixest +* scplot + checking examples ... ERROR + checking whether package ‘scplot’ can be installed ... WARNING + +* SCpubr checking tests ... ERROR -* ggforce +* scRNAstat checking examples ... ERROR -* ggformula - checking for code/documentation mismatches ... WARNING +* scrutiny + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* ggfortify +* scUtils checking tests ... ERROR -* ggh4x +* SCVA checking examples ... ERROR + +* SDMtune checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* gghighlight +* seAMLess checking examples ... ERROR + +* SeaVal + checking examples ... ERROR + +* sedproxy checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* ggiraph +* see checking examples ... ERROR checking tests ... ERROR -* ggmap - checking whether package ‘ggmap’ can be installed ... WARNING +* seedreg + checking examples ... ERROR -* ggmcmc +* SEI checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* ggmice - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* sensitivity + checking examples ... ERROR -* ggmulti +* SensoMineR checking examples ... ERROR + +* SentimentAnalysis checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* ggparallel +* sentopics + checking examples ... ERROR checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* ggplotlyExtra +* sephora checking examples ... ERROR -* ggpol +* seqHMM checking examples ... ERROR + checking tests ... ERROR -* ggpubr +* SerolyzeR + checking examples ... ERROR checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* ggraph +* serosv checking examples ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* ggredist +* SetMethods checking examples ... ERROR -* ggRtsy +* Seurat + checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* ggseqplot - checking examples ... ERROR +* sffdr + checking re-building of vignette outputs ... ERROR + +* sfnetworks checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* ggside +* sglg checking examples ... ERROR + +* sgsR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘ggside’ can be installed ... WARNING - checking for code/documentation mismatches ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* ggsmc - checking running R code from vignettes ... ERROR +* shadowtext + checking re-building of vignette outputs ... ERROR -* ggspatial +* SHAPforxgboost checking examples ... ERROR - checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* ggstatsplot +* ShapleyOutlier checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* ggswissmaps - checking whether package ‘ggswissmaps’ can be installed ... WARNING - checking whether the namespace can be loaded with stated dependencies ... NOTE +* shapviz + checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* ggupset +* shazam checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* ggVennDiagram - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* SHELF + checking tests ... ERROR -* Greymodels +* sherlock checking examples ... ERROR -* GWASinspector - checking whether package ‘GWASinspector’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* shinipsum + checking tests ... ERROR -* GWlasso +* ShinyItemAnalysis checking examples ... ERROR -* harbinger +* shinyMixR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* shinyMobile checking examples ... ERROR - checking whether package ‘harbinger’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* HCmodelSets +* shoredate checking examples ... ERROR - checking whether package ‘HCmodelSets’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* healthyR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* sigminer + checking examples ... ERROR -* healthyR.ts +* signatureSurvival checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* heatmaply +* simaerep checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* heemod - checking running R code from vignettes ... ERROR +* simmr + checking re-building of vignette outputs ... ERROR -* hesim +* SimNPH checking tests ... ERROR -* hmsidwR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* HVT - checking examples ... ERROR - checking whether package ‘HVT’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* simplecolors + checking tests ... ERROR -* hypsoLoop - checking whether package ‘hypsoLoop’ can be installed ... WARNING +* SimplyAgree + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* iCARH - checking whether package ‘iCARH’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* singleCellHaystack + checking re-building of vignette outputs ... ERROR -* ICSsmoothing +* sivirep checking tests ... ERROR -* incidental - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* sjPlot + checking re-building of vignette outputs ... ERROR + +* SkeletalVis + checking tests ... ERROR -* industRial +* skewlmm checking examples ... ERROR -* infer +* skipTrack checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* inferCSN +* smallsets checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* injurytools - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* SmartEDA + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* inTextSummaryTable - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* smdi + checking re-building of vignette outputs ... ERROR -* inti - checking whether package ‘inti’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* smer + checking re-building of vignette outputs ... ERROR -* IPV +* smoothic checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* IRon +* smplot2 checking examples ... ERROR -* isoorbi - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* soc.ca + checking examples ... ERROR -* jenga - checking whether package ‘jenga’ can be installed ... WARNING +* SOMbrero + checking tests ... ERROR -* karel +* spacejamr checking examples ... ERROR checking tests ... ERROR -* kDGLM - checking examples ... ERROR +* SPARRAfairness + checking re-building of vignette outputs ... ERROR -* Keyboard +* SPARTAAS checking examples ... ERROR - checking whether package ‘Keyboard’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* latentcor - checking examples ... ERROR +* spatialwarnings + checking tests ... ERROR -* lcars - checking examples ... ERROR - checking running R code from vignettes ... ERROR +* SPECK + checking re-building of vignette outputs ... ERROR -* lemon +* specr checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* lfproQC - checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* spect + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* lilikoi - checking whether package ‘lilikoi’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* spectralR + checking tests ... ERROR -* LMoFit - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* SPIChanges + checking re-building of vignette outputs ... ERROR -* LocalCop - checking re-building of vignette outputs ... NOTE +* spinifex + checking examples ... ERROR + checking tests ... ERROR -* lognorm - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* splithalf + checking re-building of vignette outputs ... ERROR -* lsl +* spork checking examples ... ERROR + checking tests ... ERROR -* MAINT.Data - checking examples ... ERROR +* sport + checking tests ... ERROR + +* sportyR checking tests ... ERROR - checking whether package ‘MAINT.Data’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* MarketMatching +* spotoroo + checking tests ... ERROR checking re-building of vignette outputs ... ERROR -* metacart - checking examples ... ERROR - checking whether package ‘metacart’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* SPUTNIK + checking whether package ‘SPUTNIK’ can be installed ... WARNING -* MetAlyzer - checking examples ... ERROR +* SqueakR + checking re-building of vignette outputs ... ERROR -* metR - checking examples ... ERROR +* ssd4mosaic checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* mgcViz - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* ssdtools + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* migraph +* sssc + checking whether package ‘sssc’ can be installed ... WARNING + +* stabm checking tests ... ERROR -* mikropml +* starvz checking tests ... ERROR -* MiMIR +* statebins checking examples ... ERROR + checking tests ... ERROR -* miRetrieve +* states checking tests ... ERROR -* MiscMetabar - checking examples ... ERROR +* statgenGWAS checking tests ... ERROR -* misspi +* statgenGxE checking examples ... ERROR + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* mizer +* statgenHTP + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* statgenIBD checking tests ... ERROR -* MLEce +* statgenSTA checking examples ... ERROR - checking whether package ‘MLEce’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* modeltime.resample checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* moreparty - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* stats19 + checking re-building of vignette outputs ... ERROR -* mppR - checking running R code from vignettes ... ERROR - checking whether package ‘mppR’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE +* statVisual + checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* MPTmultiverse +* StratifiedMedicine + checking re-building of vignette outputs ... ERROR + +* STraTUS checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* mtb +* stRoke checking tests ... ERROR -* mudfold - checking whether package ‘mudfold’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* subincomeR + checking re-building of vignette outputs ... ERROR -* mulgar +* suddengains checking examples ... ERROR + checking re-building of vignette outputs ... ERROR + +* SuperCell + checking re-building of vignette outputs ... ERROR + +* Superpower + checking tests ... ERROR + +* superspreading + checking re-building of vignette outputs ... ERROR -* MultiTraits +* surveyexplorer + checking tests ... ERROR + +* survHE + checking tests ... ERROR + +* survivalAnalysis checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR + +* survParamSim + checking re-building of vignette outputs ... ERROR -* mvSLOUCH - checking re-building of vignette outputs ... NOTE +* survstan + checking re-building of vignette outputs ... ERROR -* naive - checking whether package ‘naive’ can be installed ... WARNING +* SWMPrExtension + checking examples ... ERROR -* ncappc - checking whether package ‘ncappc’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* symptomcheckR + checking examples ... ERROR -* neatmaps +* synthpop checking examples ... ERROR -* NetFACS +* Sysrecon checking examples ... ERROR - checking running R code from vignettes ... ERROR -* NetworkInference +* tabledown checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘NetworkInference’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* NHSRplotthedots +* tastypie checking tests ... ERROR -* nichetools - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* taylor + checking re-building of vignette outputs ... ERROR -* NIMAA - checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* TcGSA + checking Rd cross-references ... WARNING -* nzelect +* TCIU checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* oddsratio +* teal.reporter checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking tests ... ERROR -* OmicNavigator +* teal.widgets checking tests ... ERROR -* ordbetareg +* telraamStats checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* pafr - checking tests ... ERROR - -* pathviewr +* Tendril checking tests ... ERROR -* pdxTrees - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* PeakError +* tern.mmrm checking examples ... ERROR -* PeakSegJoint +* TestAnaAPP + checking tests ... ERROR + +* TestGardener checking examples ... ERROR -* PeakSegOptimal +* texmex checking examples ... ERROR -* personalized +* texreg checking tests ... ERROR -* Plasmidprofiler +* textplot checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* plotDK +* thematic + checking examples ... ERROR checking tests ... ERROR -* PlotFTIR - checking examples ... ERROR +* ThermalSampleR checking tests ... ERROR - checking running R code from vignettes ... ERROR -* plotly - checking examples ... ERROR +* tickr checking tests ... ERROR -* plotthis +* tidycat checking examples ... ERROR + checking re-building of vignette outputs ... ERROR -* pmartR +* tidyCDISC checking tests ... ERROR -* pmxTools +* tidychangepoint + checking examples ... ERROR checking tests ... ERROR -* pogit - checking whether package ‘pogit’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* tidycomm + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* posterior - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* TidyDensity + checking examples ... ERROR -* PPQplan - checking re-building of vignette outputs ... NOTE +* tidyEdSurvey + checking tests ... ERROR -* ppseq - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* tidyfit + checking re-building of vignette outputs ... ERROR -* precintcon - checking examples ... ERROR +* tidyHeatmap + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* pRecipe - checking whether package ‘pRecipe’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* tidyLPA + checking tests ... ERROR -* PReMiuM - checking whether package ‘PReMiuM’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* tidyMC + checking tests ... ERROR -* prevR +* tidypaleo checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘prevR’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* priorsense +* tidyplots checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* probably checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* processmapR +* tidyposterior checking tests ... ERROR -* psborrow +* tidysdm + checking examples ... ERROR checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* PupilPre - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* qgcomp +* tidyseurat checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘qgcomp’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* qpNCA +* tidyterra + checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘qpNCA’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* r2dii.plot +* timetk checking tests ... ERROR -* r4ss - checking whether package ‘r4ss’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* r6qualitytools +* tinyarray checking examples ... ERROR - checking whether package ‘r6qualitytools’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* Radviz +* tip checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* rassta - checking examples ... ERROR - checking tests ... ERROR +* tlars + checking re-building of vignette outputs ... ERROR -* rater +* tmt checking tests ... ERROR -* ratlas +* tntpr checking tests ... ERROR - checking re-building of vignette outputs ... NOTE -* RclusTool +* toxEval checking examples ... ERROR - checking whether package ‘RclusTool’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking tests ... ERROR -* RDS - checking examples ... ERROR - checking whether package ‘RDS’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* TPMplt + checking whether package ‘TPMplt’ can be installed ... WARNING -* regtomean - checking whether package ‘regtomean’ can be installed ... WARNING +* track2KBA + checking tests ... ERROR -* RKorAPClient +* tradeoffaucdim checking tests ... ERROR -* rmcfs - checking whether package ‘rmcfs’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* trajmsm + checking whether package ‘trajmsm’ can be installed ... WARNING -* rnmamod +* TransProR checking examples ... ERROR + +* traumar checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘rnmamod’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE -* roahd - checking examples ... ERROR +* TreatmentPatterns + checking tests ... ERROR + +* treefit + checking re-building of vignette outputs ... ERROR -* robomit +* treeheatr checking examples ... ERROR - checking whether package ‘robomit’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* romic +* trelliscopejs checking tests ... ERROR -* roptions - checking examples ... ERROR +* trending + checking re-building of vignette outputs ... ERROR -* rsimsum - checking whether package ‘rsimsum’ can be installed ... WARNING +* TRexSelector + checking re-building of vignette outputs ... ERROR -* rSRD +* triplot checking examples ... ERROR - checking whether package ‘rSRD’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking tests ... ERROR -* saeRobust +* triptych checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘saeRobust’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* scUtils - checking tests ... ERROR +* tsfeatures + checking re-building of vignette outputs ... ERROR -* SCVA +* tsgc checking examples ... ERROR -* SDMtune +* tsnet checking tests ... ERROR - checking installed package size ... NOTE -* seAMLess - checking examples ... ERROR +* tvthemes + checking tests ... ERROR -* seedreg +* twowaytests checking examples ... ERROR -* segen - checking whether package ‘segen’ can be installed ... WARNING - -* sensitivity +* ubiquity checking examples ... ERROR - checking whether package ‘sensitivity’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* sglg +* ufs checking examples ... ERROR -* sgsR - checking tests ... ERROR +* ulrb + checking re-building of vignette outputs ... ERROR -* SHAPforxgboost +* umiAnalyzer checking examples ... ERROR -* SHELF - checking whether package ‘SHELF’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* signatureSurvival +* umx checking examples ... ERROR - checking whether package ‘signatureSurvival’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* SimNPH checking tests ... ERROR -* simRestore +* UnalR checking tests ... ERROR -* singleCellHaystack - checking examples ... ERROR - checking whether package ‘singleCellHaystack’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* unhcrthemes + checking re-building of vignette outputs ... ERROR -* SNPannotator - checking whether package ‘SNPannotator’ can be installed ... WARNING - checking R code for possible problems ... NOTE +* ushr + checking examples ... ERROR -* soc.ca +* usmap checking examples ... ERROR - checking whether package ‘soc.ca’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* SOMbrero +* utile.visuals checking examples ... ERROR + +* vaccine checking tests ... ERROR - checking whether package ‘SOMbrero’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* spectralR +* vaccineff checking tests ... ERROR -* spinifex +* valr checking tests ... ERROR -* spooky - checking whether package ‘spooky’ can be installed ... WARNING +* vangogh + checking re-building of vignette outputs ... ERROR -* sport - checking tests ... ERROR +* vanquish + checking whether package ‘vanquish’ can be installed ... WARNING -* SqueakR - checking re-building of vignette outputs ... NOTE +* VarSelLCM + checking re-building of vignette outputs ... ERROR -* statgenGWAS +* vayr checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* statgenHTP - checking tests ... ERROR +* vDiveR + checking examples ... ERROR -* Superpower +* vecmatch checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking whether package ‘Superpower’ can be installed ... WARNING - checking R code for possible problems ... NOTE - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* surveyexplorer - checking examples ... ERROR +* vinereg + checking tests ... ERROR -* tabledown - checking examples ... ERROR +* vip + checking tests ... ERROR -* TCIU +* viscomp checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* tcplfit2 - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* visdat + checking tests ... ERROR -* tetragon - checking whether package ‘tetragon’ can be installed ... WARNING +* ViSiElse + checking re-building of vignette outputs ... ERROR -* thematic +* visualpred + checking whether package ‘visualpred’ can be installed ... WARNING + +* visxhclust checking examples ... ERROR checking tests ... ERROR -* tidybayes +* vital checking examples ... ERROR + checking tests ... ERROR -* tidycat +* vivainsights checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* tidyCDISC checking tests ... ERROR -* tidyplots +* vivaldi checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking re-building of vignette outputs ... ERROR -* tidytreatment - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* vivid + checking examples ... ERROR -* timetk +* vivo checking tests ... ERROR -* TOSTER - checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* VizTest + checking re-building of vignette outputs ... ERROR -* TransProR +* VLTimeCausality checking examples ... ERROR -* TreatmentPatterns +* voiceR + checking examples ... ERROR checking tests ... ERROR -* TreatmentSelection +* volker checking examples ... ERROR - checking whether package ‘TreatmentSelection’ can be installed ... WARNING - checking R code for possible problems ... NOTE - -* trelliscopejs checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* tricolore +* voluModel checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* tsnet checking tests ... ERROR + checking re-building of vignette outputs ... ERROR -* UCSCXenaShiny - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE +* voteogram + checking tests ... ERROR -* umiAnalyzer - checking examples ... ERROR +* vroom + checking re-building of vignette outputs ... ERROR -* usmap +* vvshiny checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* vaccineff +* washi checking tests ... ERROR -* valr +* whippr checking tests ... ERROR -* visOmopResults +* widyr + checking re-building of vignette outputs ... ERROR + +* wilson checking tests ... ERROR -* visvow +* windfarmGA checking tests ... ERROR - checking whether package ‘visvow’ can be installed ... WARNING - checking R code for possible problems ... NOTE -* vivaldi +* wordpredictor checking examples ... ERROR checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE -* voluModel +* wpa checking examples ... ERROR - checking re-building of vignette outputs ... NOTE - -* vvshiny checking tests ... ERROR -* VWPre - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE - -* WebAnalytics +* wql checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘WebAnalytics’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* WhatsR +* WRS2 + checking re-building of vignette outputs ... ERROR + +* WRTDStidal checking examples ... ERROR - checking tests ... ERROR - checking whether package ‘WhatsR’ can be installed ... WARNING - checking R code for possible problems ... NOTE + checking re-building of vignette outputs ... ERROR -* wilson - checking tests ... ERROR +* xaringanthemer + checking re-building of vignette outputs ... ERROR -* wordmap - checking tests ... ERROR +* xdvir + checking re-building of vignette outputs ... ERROR -* xpose +* xkcd checking examples ... ERROR - checking tests ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE * xpose.xtras checking examples ... ERROR - checking running R code from vignettes ... ERROR - checking re-building of vignette outputs ... NOTE + checking tests ... ERROR + checking re-building of vignette outputs ... ERROR + +* xray + checking examples ... ERROR + +* xvm + checking re-building of vignette outputs ... ERROR * yamlet checking examples ... ERROR checking tests ... ERROR +* yardstick + checking tests ... ERROR + +* ZetaSuite + checking whether package ‘ZetaSuite’ can be installed ... WARNING + ### Failed to check -* abctools (NA) -* adjustedCurves (NA) -* animalEKF (NA) -* ANOM (NA) -* atRisk (NA) -* autoReg (NA) -* AutoScore (NA) -* bartMan (NA) -* bayesDP (NA) -* BayesianFactorZoo (NA) -* BayesSurvive (NA) -* BCClong (NA) -* BGGM (NA) -* binsreg (NA) -* bspcov (NA) -* BSTZINB (NA) -* BuyseTest (NA) -* CAESAR.Suite (NA) -* CARBayesST (NA) -* Certara.VPCResults (NA) -* CGPfunctions (NA) -* cinaR (NA) -* cmprskcoxmsm (NA) -* COMMA (NA) -* contsurvplot (NA) -* counterfactuals (NA) -* CRMetrics (NA) -* ctsem (NA) -* dartR.base (NA) -* dartR.captive (NA) -* dartR.popgen (NA) -* dartR.sexlinked (NA) -* dartR.sim (NA) -* dartR.spatial (NA) -* DepthProc (NA) -* DFD (NA) -* dMrs (NA) -* DR.SC (NA) -* dscoreMSM (NA) -* easybgm (NA) -* EcoEnsemble (NA) -* ecolottery (NA) -* EpiEstim (NA) -* evolqg (NA) -* flexrsurv (NA) -* ForecastComb (NA) -* gap (NA) -* gapfill (NA) -* genekitr (NA) -* GeneSelectR (NA) -* GeomComb (NA) -* ggtern (NA) -* ggThemeAssist (NA) -* gJLS2 (NA) -* grandR (NA) -* GseaVis (NA) -* hettx (NA) -* Hmisc (NA) -* Hmsc (NA) -* iClusterVB (NA) -* immcp (NA) -* inventorize (NA) -* invivoPKfit (NA) -* iNZightPlots (NA) -* iNZightRegression (NA) -* IRexamples (NA) -* jmBIG (NA) -* joineRML (NA) -* jsmodule (NA) -* kmc (NA) -* KMunicate (NA) -* L2E (NA) -* Landmarking (NA) -* lavaSearch2 (NA) -* llbayesireg (NA) -* lnmixsurv (NA) -* LorenzRegression (NA) -* lsirm12pl (NA) -* MARVEL (NA) -* MaxWiK (NA) -* mbsts (NA) -* MendelianRandomization (NA) -* miWQS (NA) -* mlmts (NA) -* mlr (NA) -* MRZero (NA) -* mstate (NA) -* multilevelTools (NA) -* multinma (NA) -* multipleOutcomes (NA) -* MuPETFlow (NA) -* NCA (NA) -* netcmc (NA) -* NetworkChange (NA) -* nlmeVPC (NA) -* NMADiagT (NA) -* NMF (NA) -* obliqueRSF (NA) -* OlinkAnalyze (NA) -* optweight (NA) -* OVtool (NA) -* pammtools (NA) -* paths (NA) -* pcvr (NA) -* PLMIX (NA) -* popstudy (NA) -* pould (NA) -* PoweREST (NA) -* powerly (NA) -* pre (NA) -* ProFAST (NA) -* psbcSpeedUp (NA) -* pscore (NA) -* qPCRtools (NA) -* qris (NA) -* qte (NA) -* quantilogram (NA) -* quid (NA) -* RcmdrPlugin.RiskDemo (NA) -* rddtools (NA) -* relsurv (NA) -* ReporterScore (NA) -* riskRegression (NA) -* robber (NA) -* robmed (NA) -* robmedExtra (NA) -* RPPanalyzer (NA) -* RQdeltaCT (NA) -* rstanarm (NA) -* rTwig (NA) -* RVA (NA) -* S4DM (NA) -* scCustomize (NA) -* SCdeconR (NA) -* scGate (NA) -* SCIntRuler (NA) -* scMappR (NA) -* scpi (NA) -* SCpubr (NA) -* scRNAstat (NA) -* sectorgap (NA) -* SEERaBomb (NA) -* semicmprskcoxmsm (NA) -* SensMap (NA) -* Seurat (NA) -* shinyTempSignal (NA) -* sievePH (NA) -* SiFINeT (NA) -* sigminer (NA) -* Signac (NA) -* SimplyAgree (NA) -* SNPassoc (NA) -* snplinkage (NA) -* SoupX (NA) -* SpaCCI (NA) -* sparsereg (NA) -* spectralAnalysis (NA) -* spikeSlabGAM (NA) -* stabiliser (NA) -* statsr (NA) -* streamDAG (NA) -* survex (NA) -* survHE (NA) -* survidm (NA) -* tempted (NA) -* TestAnaAPP (NA) -* tidydr (NA) -* tidyEdSurvey (NA) -* tidyseurat (NA) -* tidyvpc (NA) -* tinyarray (NA) -* treeclim (NA) -* TriDimRegression (NA) -* TSrepr (NA) -* twang (NA) -* vdg (NA) -* visa (NA) -* wppExplorer (NA) -* WRTDStidal (NA) +* bartMan (NA) +* bayesdfa (NA) +* bmstdr (NA) +* cocktailApp (NA) +* coda.plot (NA) +* deeptime (NA) +* EcoEnsemble (NA) +* fio (NA) +* ggmosaic (NA) +* ggmulti (NA) +* ggtern (NA) +* inventorize (NA) +* MultiTraits (NA) +* PieGlyph (NA) +* rmsb (NA) +* rshift (NA) +* rstanarm (NA) +* streamDAG (NA) +* tidydr (NA) +* tricolore (NA) +* TriDimRegression (NA) +* webSDM (NA) +* xpose (NA) diff --git a/revdep/failures.md b/revdep/failures.md index d5b7b812fc..55c7993a18 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,23 +1,23 @@ -# abctools +# bartMan
-* Version: 1.1.7 -* GitHub: https://github.com/dennisprangle/abctools -* Source code: https://github.com/cran/abctools -* Date/Publication: 2023-09-18 10:40:02 UTC -* Number of recursive dependencies: 75 +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/bartMan +* Date/Publication: 2024-07-24 12:10:02 UTC +* Number of recursive dependencies: 134 -Run `revdepcheck::cloud_details(, "abctools")` for more info +Run `revdepcheck::cloud_details(, "bartMan")` for more info
-## In both +## Newly broken -* checking whether package ‘abctools’ can be installed ... ERROR +* checking whether package ‘bartMan’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/abctools/new/abctools.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details. ``` ## Installation @@ -25,147 +25,213 @@ Run `revdepcheck::cloud_details(, "abctools")` for more info ### Devel ``` -* installing *source* package ‘abctools’ ... -** package ‘abctools’ successfully unpacked and MD5 sums checked +* installing *source* package ‘bartMan’ ... +** package ‘bartMan’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c abctools.c -o abctools.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o abctools.so abctools.o init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/abctools/new/abctools.Rcheck/00LOCK-abctools/00new/abctools/libs ** R ** data -** inst +*** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in eval(exprs[i], envir) : object 'justify_grobs' not found +Error: unable to load R code in package ‘bartMan’ Execution halted -ERROR: lazy loading failed for package ‘abctools’ -* removing ‘/tmp/workdir/abctools/new/abctools.Rcheck/abctools’ +ERROR: lazy loading failed for package ‘bartMan’ +* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’ ``` ### CRAN ``` -* installing *source* package ‘abctools’ ... -** package ‘abctools’ successfully unpacked and MD5 sums checked +* installing *source* package ‘bartMan’ ... +** package ‘bartMan’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c abctools.c -o abctools.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o abctools.so abctools.o init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/abctools/old/abctools.Rcheck/00LOCK-abctools/00new/abctools/libs ** R ** data -** inst +*** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘abctools’ -* removing ‘/tmp/workdir/abctools/old/abctools.Rcheck/abctools’ +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (bartMan) ``` -# adjustedCurves +# bayesdfa
-* Version: 0.11.2 -* GitHub: https://github.com/RobinDenz1/adjustedCurves -* Source code: https://github.com/cran/adjustedCurves -* Date/Publication: 2024-07-29 14:30:02 UTC -* Number of recursive dependencies: 177 +* Version: 1.3.4 +* GitHub: https://github.com/fate-ewi/bayesdfa +* Source code: https://github.com/cran/bayesdfa +* Date/Publication: 2025-03-22 20:30:21 UTC +* Number of recursive dependencies: 85 -Run `revdepcheck::cloud_details(, "adjustedCurves")` for more info +Run `revdepcheck::cloud_details(, "bayesdfa")` for more info
-## Error before installation +## In both + +* checking whether package ‘bayesdfa’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details. + ``` + +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/adjustedCurves/new/adjustedCurves.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘adjustedCurves/DESCRIPTION’ ... OK -... ---- finished re-building ‘plot_customization.rmd’ +* installing *source* package ‘bayesdfa’ ... +** package ‘bayesdfa’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘bayesdfa’ +* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’ -SUMMARY: processing the following file failed: - ‘introduction.Rmd’ -Error: Vignette re-building failed. +``` +### CRAN + +``` +* installing *source* package ‘bayesdfa’ ... +** package ‘bayesdfa’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted +ERROR: configuration failed for package ‘bayesdfa’ +* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’ -* DONE -Status: 2 ERRORs, 1 WARNING, 3 NOTEs +``` +# bmstdr + +
+* Version: 0.8.2 +* GitHub: https://github.com/sujit-sahu/bmstdr +* Source code: https://github.com/cran/bmstdr +* Date/Publication: 2025-03-31 17:30:06 UTC +* Number of recursive dependencies: 206 +Run `revdepcheck::cloud_details(, "bmstdr")` for more info +
-``` -### CRAN +## Newly broken + +* checking whether package ‘bmstdr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bmstdr/new/bmstdr.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking installed package size ... NOTE + ``` + installed size is 144.1Mb + sub-directories of 1Mb or more: + data 1.5Mb + libs 139.8Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +## Installation + +### Devel ``` -* using log directory ‘/tmp/workdir/adjustedCurves/old/adjustedCurves.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘adjustedCurves/DESCRIPTION’ ... OK -... ---- finished re-building ‘plot_customization.rmd’ +* installing *source* package ‘bmstdr’ ... +** package ‘bmstdr’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 -SUMMARY: processing the following file failed: - ‘introduction.Rmd’ -Error: Vignette re-building failed. +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: .onLoad failed in loadNamespace() for 'rstan', details: + call: NULL + error: C stack usage 9962804 is too close to the limit Execution halted +ERROR: lazy loading failed for package ‘bmstdr’ +* removing ‘/tmp/workdir/bmstdr/new/bmstdr.Rcheck/bmstdr’ -* DONE -Status: 2 ERRORs, 1 WARNING, 3 NOTEs +``` +### CRAN + +``` +* installing *source* package ‘bmstdr’ ... +** package ‘bmstdr’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** checking absolute paths in shared objects and dynamic libraries +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (bmstdr) ``` -# animalEKF +# cocktailApp
-* Version: 1.2 -* GitHub: NA -* Source code: https://github.com/cran/animalEKF -* Date/Publication: 2023-09-29 15:32:41 UTC -* Number of recursive dependencies: 76 +* Version: 0.2.3 +* GitHub: https://github.com/shabbychef/cocktailApp +* Source code: https://github.com/cran/cocktailApp +* Date/Publication: 2023-07-19 13:40:09 UTC +* Number of recursive dependencies: 94 -Run `revdepcheck::cloud_details(, "animalEKF")` for more info +Run `revdepcheck::cloud_details(, "cocktailApp")` for more info
-## In both +## Newly broken -* checking whether package ‘animalEKF’ can be installed ... ERROR +* checking whether package ‘cocktailApp’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/animalEKF/new/animalEKF.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 14729 marked UTF-8 strings ``` ## Installation @@ -173,61 +239,64 @@ Run `revdepcheck::cloud_details(, "animalEKF")` for more info ### Devel ``` -* installing *source* package ‘animalEKF’ ... -** package ‘animalEKF’ successfully unpacked and MD5 sums checked +* installing *source* package ‘cocktailApp’ ... +** package ‘cocktailApp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: .onLoad failed in loadNamespace() for 'ggtern', details: + call: NULL + error: object properties are invalid: +- @lineend must be or , not S3 Execution halted -ERROR: lazy loading failed for package ‘animalEKF’ -* removing ‘/tmp/workdir/animalEKF/new/animalEKF.Rcheck/animalEKF’ +ERROR: lazy loading failed for package ‘cocktailApp’ +* removing ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/cocktailApp’ ``` ### CRAN ``` -* installing *source* package ‘animalEKF’ ... -** package ‘animalEKF’ successfully unpacked and MD5 sums checked +* installing *source* package ‘cocktailApp’ ... +** package ‘cocktailApp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘animalEKF’ -* removing ‘/tmp/workdir/animalEKF/old/animalEKF.Rcheck/animalEKF’ +** help +*** installing help indices +*** copying figures +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (cocktailApp) ``` -# ANOM +# coda.plot
-* Version: 0.5 -* GitHub: https://github.com/PhilipPallmann/ANOM -* Source code: https://github.com/cran/ANOM -* Date/Publication: 2017-04-12 13:32:33 UTC -* Number of recursive dependencies: 63 +* Version: 0.1.9 +* GitHub: NA +* Source code: https://github.com/cran/coda.plot +* Date/Publication: 2025-04-20 21:30:02 UTC +* Number of recursive dependencies: 42 -Run `revdepcheck::cloud_details(, "ANOM")` for more info +Run `revdepcheck::cloud_details(, "coda.plot")` for more info
-## In both +## Newly broken -* checking whether package ‘ANOM’ can be installed ... ERROR +* checking whether package ‘coda.plot’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/ANOM/new/ANOM.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/00install.out’ for details. ``` ## Installation @@ -235,63 +304,59 @@ Run `revdepcheck::cloud_details(, "ANOM")` for more info ### Devel ``` -* installing *source* package ‘ANOM’ ... -** package ‘ANOM’ successfully unpacked and MD5 sums checked +* installing *source* package ‘coda.plot’ ... +** package ‘coda.plot’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: .onLoad failed in loadNamespace() for 'ggtern', details: + call: NULL + error: object properties are invalid: +- @lineend must be or , not S3 Execution halted -ERROR: lazy loading failed for package ‘ANOM’ -* removing ‘/tmp/workdir/ANOM/new/ANOM.Rcheck/ANOM’ +ERROR: lazy loading failed for package ‘coda.plot’ +* removing ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/coda.plot’ ``` ### CRAN ``` -* installing *source* package ‘ANOM’ ... -** package ‘ANOM’ successfully unpacked and MD5 sums checked +* installing *source* package ‘coda.plot’ ... +** package ‘coda.plot’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ANOM’ -* removing ‘/tmp/workdir/ANOM/old/ANOM.Rcheck/ANOM’ +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (coda.plot) ``` -# atRisk +# deeptime
-* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/atRisk -* Date/Publication: 2025-01-14 18:50:01 UTC -* Number of recursive dependencies: 37 +* Version: 2.1.0 +* GitHub: https://github.com/willgearty/deeptime +* Source code: https://github.com/cran/deeptime +* Date/Publication: 2024-10-25 23:30:02 UTC +* Number of recursive dependencies: 195 -Run `revdepcheck::cloud_details(, "atRisk")` for more info +Run `revdepcheck::cloud_details(, "deeptime")` for more info
-## In both +## Newly broken -* checking whether package ‘atRisk’ can be installed ... ERROR +* checking whether package ‘deeptime’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/atRisk/new/atRisk.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/deeptime/new/deeptime.Rcheck/00install.out’ for details. ``` ## Installation @@ -299,213 +364,221 @@ Run `revdepcheck::cloud_details(, "atRisk")` for more info ### Devel ``` -* installing *source* package ‘atRisk’ ... -** package ‘atRisk’ successfully unpacked and MD5 sums checked +* installing *source* package ‘deeptime’ ... +** package ‘deeptime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +** help +*** installing help indices +... +** testing if installed package can be loaded from temporary location +Error: package or namespace load failed for ‘deeptime’: + .onLoad failed in loadNamespace() for 'deeptime', details: + call: NULL + error: object properties are invalid: +- @hjust must be , , or , not +Error: loading failed Execution halted -ERROR: lazy loading failed for package ‘atRisk’ -* removing ‘/tmp/workdir/atRisk/new/atRisk.Rcheck/atRisk’ +ERROR: loading failed +* removing ‘/tmp/workdir/deeptime/new/deeptime.Rcheck/deeptime’ ``` ### CRAN ``` -* installing *source* package ‘atRisk’ ... -** package ‘atRisk’ successfully unpacked and MD5 sums checked +* installing *source* package ‘deeptime’ ... +** package ‘deeptime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘atRisk’ -* removing ‘/tmp/workdir/atRisk/old/atRisk.Rcheck/atRisk’ +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (deeptime) ``` -# autoReg +# EcoEnsemble
-* Version: 0.3.3 -* GitHub: https://github.com/cardiomoon/autoReg -* Source code: https://github.com/cran/autoReg -* Date/Publication: 2023-11-14 05:53:27 UTC -* Number of recursive dependencies: 215 +* Version: 1.1.2 +* GitHub: https://github.com/CefasRepRes/EcoEnsemble +* Source code: https://github.com/cran/EcoEnsemble +* Date/Publication: 2025-03-18 18:20:02 UTC +* Number of recursive dependencies: 88 -Run `revdepcheck::cloud_details(, "autoReg")` for more info +Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info
-## Error before installation +## In both + +* checking whether package ‘EcoEnsemble’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. + ``` + +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/autoReg/new/autoReg.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘autoReg/DESCRIPTION’ ... OK -... -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘Automatic_Regression_Modeling.Rmd’ using ‘UTF-8’... OK - ‘Bootstrap_Prediction.Rmd’ using ‘UTF-8’... OK - ‘Getting_started.Rmd’ using ‘UTF-8’... OK - ‘Statiastical_test_in_gaze.Rmd’ using ‘UTF-8’... OK - ‘Survival.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ensemble_model_hierarchical.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/autoReg/old/autoReg.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘autoReg/DESCRIPTION’ ... OK -... -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘Automatic_Regression_Modeling.Rmd’ using ‘UTF-8’... OK - ‘Bootstrap_Prediction.Rmd’ using ‘UTF-8’... OK - ‘Getting_started.Rmd’ using ‘UTF-8’... OK - ‘Statiastical_test_in_gaze.Rmd’ using ‘UTF-8’... OK - ‘Survival.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ensemble_model_hierarchical.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ ``` -# AutoScore +# fio
-* Version: 1.0.0 -* GitHub: https://github.com/nliulab/AutoScore -* Source code: https://github.com/cran/AutoScore -* Date/Publication: 2022-10-15 22:15:26 UTC -* Number of recursive dependencies: 173 +* Version: 0.1.6 +* GitHub: https://github.com/albersonmiranda/fio +* Source code: https://github.com/cran/fio +* Date/Publication: 2025-04-06 07:50:02 UTC +* Number of recursive dependencies: 88 -Run `revdepcheck::cloud_details(, "AutoScore")` for more info +Run `revdepcheck::cloud_details(, "fio")` for more info
-## Error before installation +## In both -### Devel - -``` -* using log directory ‘/tmp/workdir/AutoScore/new/AutoScore.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘AutoScore/DESCRIPTION’ ... OK -... -* this is package ‘AutoScore’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘survAUC’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR +* checking whether package ‘fio’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/fio/new/fio.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘fio’ ... +** package ‘fio’ successfully unpacked and MD5 sums checked +** using staged installation +Error in eval(ei, envir) : +------------------ [UNSUPPORTED RUST VERSION]------------------ +- Minimum supported Rust version is 1.77. +- Installed Rust version is 1.75.0. +--------------------------------------------------------------- +Calls: source -> withVisible -> eval -> eval +Execution halted +ERROR: configuration failed for package ‘fio’ +* removing ‘/tmp/workdir/fio/new/fio.Rcheck/fio’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/AutoScore/old/AutoScore.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘AutoScore/DESCRIPTION’ ... OK -... -* this is package ‘AutoScore’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘survAUC’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +* installing *source* package ‘fio’ ... +** package ‘fio’ successfully unpacked and MD5 sums checked +** using staged installation +Error in eval(ei, envir) : +------------------ [UNSUPPORTED RUST VERSION]------------------ +- Minimum supported Rust version is 1.77. +- Installed Rust version is 1.75.0. +--------------------------------------------------------------- +Calls: source -> withVisible -> eval -> eval +Execution halted +ERROR: configuration failed for package ‘fio’ +* removing ‘/tmp/workdir/fio/old/fio.Rcheck/fio’ ``` -# bartMan +# ggmosaic
-* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/bartMan -* Date/Publication: 2024-07-24 12:10:02 UTC -* Number of recursive dependencies: 135 +* Version: 0.3.3 +* GitHub: https://github.com/haleyjeppson/ggmosaic +* Source code: https://github.com/cran/ggmosaic +* Date/Publication: 2021-02-23 19:50:02 UTC +* Number of recursive dependencies: 74 -Run `revdepcheck::cloud_details(, "bartMan")` for more info +Run `revdepcheck::cloud_details(, "ggmosaic")` for more info
## Newly broken -* checking whether package ‘bartMan’ can be installed ... ERROR +* checking whether package ‘ggmosaic’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking dependencies in R code ... NOTE + ``` + ':::' call which should be '::': ‘scales:::censor’ + See the note in ?`:::` about the use of this operator. + Unexported object imported by a ':::' call: ‘productplots:::bound’ + See the note in ?`:::` about the use of this operator. ``` ## Installation @@ -513,61 +586,66 @@ Run `revdepcheck::cloud_details(, "bartMan")` for more info ### Devel ``` -* installing *source* package ‘bartMan’ ... -** package ‘bartMan’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggmosaic’ ... +** package ‘ggmosaic’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading -Error in eval(exprs[i], envir) : object 'justify_grobs' not found -Error: unable to load R code in package ‘bartMan’ +Error in get(x, envir = ns, inherits = FALSE) : + object 'is.waive' not found +Error: unable to load R code in package ‘ggmosaic’ Execution halted -ERROR: lazy loading failed for package ‘bartMan’ -* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’ +ERROR: lazy loading failed for package ‘ggmosaic’ +* removing ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/ggmosaic’ ``` ### CRAN ``` -* installing *source* package ‘bartMan’ ... -** package ‘bartMan’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggmosaic’ ... +** package ‘ggmosaic’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices +*** copying figures ** building package indices +** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path -* DONE (bartMan) +* DONE (ggmosaic) ``` -# bayesDP +# ggmulti
-* Version: 1.3.7 -* GitHub: https://github.com/graemeleehickey/bayesDP -* Source code: https://github.com/cran/bayesDP -* Date/Publication: 2025-01-12 11:40:10 UTC -* Number of recursive dependencies: 79 +* Version: 1.0.7 +* GitHub: NA +* Source code: https://github.com/cran/ggmulti +* Date/Publication: 2024-04-09 09:40:05 UTC +* Number of recursive dependencies: 124 -Run `revdepcheck::cloud_details(, "bayesDP")` for more info +Run `revdepcheck::cloud_details(, "ggmulti")` for more info
-## In both +## Newly broken -* checking whether package ‘bayesDP’ can be installed ... ERROR +* checking whether package ‘ggmulti’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/00install.out’ for details. ``` ## Installation @@ -575,73 +653,80 @@ Run `revdepcheck::cloud_details(, "bayesDP")` for more info ### Devel ``` -* installing *source* package ‘bayesDP’ ... -** package ‘bayesDP’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggmulti’ ... +** package ‘ggmulti’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/bayesDP/new/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in get(x, envir = ns, inherits = FALSE) : + object 'new_aes' not found +Error: unable to load R code in package ‘ggmulti’ Execution halted -ERROR: lazy loading failed for package ‘bayesDP’ -* removing ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/bayesDP’ +ERROR: lazy loading failed for package ‘ggmulti’ +* removing ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/ggmulti’ ``` ### CRAN ``` -* installing *source* package ‘bayesDP’ ... -** package ‘bayesDP’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggmulti’ ... +** package ‘ggmulti’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/bayesDP/old/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bayesDP’ -* removing ‘/tmp/workdir/bayesDP/old/bayesDP.Rcheck/bayesDP’ +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggmulti) ``` -# BayesianFactorZoo +# ggtern
-* Version: 0.0.0.3 +* Version: 3.5.0 * GitHub: NA -* Source code: https://github.com/cran/BayesianFactorZoo -* Date/Publication: 2024-10-04 09:30:08 UTC -* Number of recursive dependencies: 74 +* Source code: https://github.com/cran/ggtern +* Date/Publication: 2024-03-24 21:50:02 UTC +* Number of recursive dependencies: 40 -Run `revdepcheck::cloud_details(, "BayesianFactorZoo")` for more info +Run `revdepcheck::cloud_details(, "ggtern")` for more info
-## In both +## Newly broken -* checking whether package ‘BayesianFactorZoo’ can be installed ... ERROR +* checking whether package ‘ggtern’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/BayesianFactorZoo/new/BayesianFactorZoo.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘chemometrics’ + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘sp’ ``` ## Installation @@ -649,139 +734,123 @@ Run `revdepcheck::cloud_details(, "BayesianFactorZoo")` for more info ### Devel ``` -* installing *source* package ‘BayesianFactorZoo’ ... -** package ‘BayesianFactorZoo’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggtern’ ... +** package ‘ggtern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB +** demo ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in get(x, envir = ns, inherits = FALSE) : + object 'update_guides' not found +Error: unable to load R code in package ‘ggtern’ Execution halted -ERROR: lazy loading failed for package ‘BayesianFactorZoo’ -* removing ‘/tmp/workdir/BayesianFactorZoo/new/BayesianFactorZoo.Rcheck/BayesianFactorZoo’ +ERROR: lazy loading failed for package ‘ggtern’ +* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’ ``` ### CRAN ``` -* installing *source* package ‘BayesianFactorZoo’ ... -** package ‘BayesianFactorZoo’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ggtern’ ... +** package ‘ggtern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB +** demo ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BayesianFactorZoo’ -* removing ‘/tmp/workdir/BayesianFactorZoo/old/BayesianFactorZoo.Rcheck/BayesianFactorZoo’ +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggtern) ``` -# BayesSurvive +# inventorize
-* Version: 0.0.2 -* GitHub: https://github.com/ocbe-uio/BayesSurvive -* Source code: https://github.com/cran/BayesSurvive -* Date/Publication: 2024-06-04 13:20:12 UTC -* Number of recursive dependencies: 118 +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/inventorize +* Date/Publication: 2022-05-31 22:20:09 UTC +* Number of recursive dependencies: 69 -Run `revdepcheck::cloud_details(, "BayesSurvive")` for more info +Run `revdepcheck::cloud_details(, "inventorize")` for more info
-## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/BayesSurvive/new/BayesSurvive.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘BayesSurvive/DESCRIPTION’ ... OK -... -* this is package ‘BayesSurvive’ version ‘0.0.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ +## Newly broken -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR +* checking whether package ‘inventorize’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘inventorize’ ... +** package ‘inventorize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in pm[[2]] : subscript out of bounds +Error: unable to load R code in package ‘inventorize’ +Execution halted +ERROR: lazy loading failed for package ‘inventorize’ +* removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/BayesSurvive/old/BayesSurvive.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘BayesSurvive/DESCRIPTION’ ... OK -... -* this is package ‘BayesSurvive’ version ‘0.0.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - +* installing *source* package ‘inventorize’ ... +** package ‘inventorize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Warning in qgamma(service_level, alpha, beta) : NaNs produced +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (inventorize) ``` -# BCClong +# MultiTraits
-* Version: 1.0.3 +* Version: 0.5.0 * GitHub: NA -* Source code: https://github.com/cran/BCClong -* Date/Publication: 2024-06-24 00:00:02 UTC -* Number of recursive dependencies: 148 +* Source code: https://github.com/cran/MultiTraits +* Date/Publication: 2025-04-20 18:40:02 UTC +* Number of recursive dependencies: 137 -Run `revdepcheck::cloud_details(, "BCClong")` for more info +Run `revdepcheck::cloud_details(, "MultiTraits")` for more info
-## In both +## Newly broken -* checking whether package ‘BCClong’ can be installed ... ERROR +* checking whether package ‘MultiTraits’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/00install.out’ for details. ``` ## Installation @@ -789,77 +858,67 @@ Run `revdepcheck::cloud_details(, "BCClong")` for more info ### Devel ``` -* installing *source* package ‘BCClong’ ... -** package ‘BCClong’ successfully unpacked and MD5 sums checked +* installing *source* package ‘MultiTraits’ ... +** package ‘MultiTraits’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -... ** R ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: .onLoad failed in loadNamespace() for 'ggtern', details: + call: NULL + error: object properties are invalid: +- @lineend must be or , not S3 Execution halted -ERROR: lazy loading failed for package ‘BCClong’ -* removing ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/BCClong’ +ERROR: lazy loading failed for package ‘MultiTraits’ +* removing ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/MultiTraits’ ``` ### CRAN ``` -* installing *source* package ‘BCClong’ ... -** package ‘BCClong’ successfully unpacked and MD5 sums checked +* installing *source* package ‘MultiTraits’ ... +** package ‘MultiTraits’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -... ** R ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BCClong’ -* removing ‘/tmp/workdir/BCClong/old/BCClong.Rcheck/BCClong’ +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (MultiTraits) ``` -# BGGM +# PieGlyph
-* Version: 2.1.5 -* GitHub: https://github.com/donaldRwilliams/BGGM -* Source code: https://github.com/cran/BGGM -* Date/Publication: 2024-12-22 21:40:02 UTC -* Number of recursive dependencies: 211 +* Version: 1.0.0 +* GitHub: https://github.com/rishvish/PieGlyph +* Source code: https://github.com/cran/PieGlyph +* Date/Publication: 2024-06-28 12:00:02 UTC +* Number of recursive dependencies: 88 -Run `revdepcheck::cloud_details(, "BGGM")` for more info +Run `revdepcheck::cloud_details(, "PieGlyph")` for more info
-## In both +## Newly broken -* checking whether package ‘BGGM’ can be installed ... ERROR +* checking whether package ‘PieGlyph’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/00install.out’ for details. ``` ## Installation @@ -867,77 +926,62 @@ Run `revdepcheck::cloud_details(, "BGGM")` for more info ### Devel ``` -* installing *source* package ‘BGGM’ ... -** package ‘BGGM’ successfully unpacked and MD5 sums checked +* installing *source* package ‘PieGlyph’ ... +** package ‘PieGlyph’ successfully unpacked and MD5 sums checked ** using staged installation -configure: creating ./config.status -config.status: creating src/Makevars -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_NO_DEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppDist/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_NO_DEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppDist/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c bggm_fast.cpp -o bggm_fast.o -... -** data -*** moving datasets to lazyload DB +** R ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in get(x, envir = ns, inherits = FALSE) : + object 'is.waive' not found +Error: unable to load R code in package ‘PieGlyph’ Execution halted -ERROR: lazy loading failed for package ‘BGGM’ -* removing ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/BGGM’ +ERROR: lazy loading failed for package ‘PieGlyph’ +* removing ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/PieGlyph’ ``` ### CRAN ``` -* installing *source* package ‘BGGM’ ... -** package ‘BGGM’ successfully unpacked and MD5 sums checked +* installing *source* package ‘PieGlyph’ ... +** package ‘PieGlyph’ successfully unpacked and MD5 sums checked ** using staged installation -configure: creating ./config.status -config.status: creating src/Makevars -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_NO_DEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppDist/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_NO_DEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppDist/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c bggm_fast.cpp -o bggm_fast.o -... -** data -*** moving datasets to lazyload DB +** R ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BGGM’ -* removing ‘/tmp/workdir/BGGM/old/BGGM.Rcheck/BGGM’ +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (PieGlyph) ``` -# binsreg +# rmsb
-* Version: 1.1 +* Version: 1.1-2 * GitHub: NA -* Source code: https://github.com/cran/binsreg -* Date/Publication: 2024-07-23 14:30:01 UTC -* Number of recursive dependencies: 35 +* Source code: https://github.com/cran/rmsb +* Date/Publication: 2025-04-13 16:30:02 UTC +* Number of recursive dependencies: 137 -Run `revdepcheck::cloud_details(, "binsreg")` for more info +Run `revdepcheck::cloud_details(, "rmsb")` for more info
## In both -* checking whether package ‘binsreg’ can be installed ... ERROR +* checking whether package ‘rmsb’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/binsreg/new/binsreg.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details. ``` ## Installation @@ -945,57 +989,51 @@ Run `revdepcheck::cloud_details(, "binsreg")` for more info ### Devel ``` -* installing *source* package ‘binsreg’ ... -** package ‘binsreg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rmsb’ ... +** package ‘rmsb’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘binsreg’ -* removing ‘/tmp/workdir/binsreg/new/binsreg.Rcheck/binsreg’ +ERROR: configuration failed for package ‘rmsb’ +* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’ ``` ### CRAN ``` -* installing *source* package ‘binsreg’ ... -** package ‘binsreg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rmsb’ ... +** package ‘rmsb’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘binsreg’ -* removing ‘/tmp/workdir/binsreg/old/binsreg.Rcheck/binsreg’ +ERROR: configuration failed for package ‘rmsb’ +* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’ ``` -# bspcov +# rshift
-* Version: 1.0.1 -* GitHub: https://github.com/statjs/bspcov -* Source code: https://github.com/cran/bspcov -* Date/Publication: 2024-11-13 20:10:02 UTC -* Number of recursive dependencies: 111 +* Version: 3.1.2 +* GitHub: https://github.com/alexhroom/rshift +* Source code: https://github.com/cran/rshift +* Date/Publication: 2025-04-06 18:40:02 UTC +* Number of recursive dependencies: 35 -Run `revdepcheck::cloud_details(, "bspcov")` for more info +Run `revdepcheck::cloud_details(, "rshift")` for more info
## In both -* checking whether package ‘bspcov’ can be installed ... ERROR +* checking whether package ‘rshift’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/bspcov/new/bspcov.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rshift/new/rshift.Rcheck/00install.out’ for details. ``` ## Installation @@ -1003,61 +1041,77 @@ Run `revdepcheck::cloud_details(, "bspcov")` for more info ### Devel ``` -* installing *source* package ‘bspcov’ ... -** package ‘bspcov’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rshift’ ... +** package ‘rshift’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bspcov’ -* removing ‘/tmp/workdir/bspcov/new/bspcov.Rcheck/bspcov’ +Using cargo 1.75.0 +Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball) +Building for CRAN. +Writing `src/Makevars`. +`tools/config.R` has finished. +** libs +using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +... +export CARGO_HOME=/tmp/workdir/rshift/new/rshift.Rcheck/00_pkg_src/rshift/src/.cargo && \ +export PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/root/.cargo/bin" && \ +RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target +error: failed to parse lock file at: /tmp/workdir/rshift/new/rshift.Rcheck/00_pkg_src/rshift/src/rust/Cargo.lock + +Caused by: + lock file version 4 requires `-Znext-lockfile-bump` +make: *** [Makevars:28: rust/target/release/librshift.a] Error 101 +ERROR: compilation failed for package ‘rshift’ +* removing ‘/tmp/workdir/rshift/new/rshift.Rcheck/rshift’ ``` ### CRAN ``` -* installing *source* package ‘bspcov’ ... -** package ‘bspcov’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rshift’ ... +** package ‘rshift’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘bspcov’ -* removing ‘/tmp/workdir/bspcov/old/bspcov.Rcheck/bspcov’ +Using cargo 1.75.0 +Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball) +Building for CRAN. +Writing `src/Makevars`. +`tools/config.R` has finished. +** libs +using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +... +export CARGO_HOME=/tmp/workdir/rshift/old/rshift.Rcheck/00_pkg_src/rshift/src/.cargo && \ +export PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/root/.cargo/bin" && \ +RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target +error: failed to parse lock file at: /tmp/workdir/rshift/old/rshift.Rcheck/00_pkg_src/rshift/src/rust/Cargo.lock + +Caused by: + lock file version 4 requires `-Znext-lockfile-bump` +make: *** [Makevars:28: rust/target/release/librshift.a] Error 101 +ERROR: compilation failed for package ‘rshift’ +* removing ‘/tmp/workdir/rshift/old/rshift.Rcheck/rshift’ ``` -# BSTZINB +# rstanarm
-* Version: 1.0.1 -* GitHub: https://github.com/SumanM47/BSTZINB -* Source code: https://github.com/cran/BSTZINB -* Date/Publication: 2024-10-31 22:50:02 UTC -* Number of recursive dependencies: 110 +* Version: 2.32.1 +* GitHub: https://github.com/stan-dev/rstanarm +* Source code: https://github.com/cran/rstanarm +* Date/Publication: 2024-01-18 23:00:03 UTC +* Number of recursive dependencies: 140 -Run `revdepcheck::cloud_details(, "BSTZINB")` for more info +Run `revdepcheck::cloud_details(, "rstanarm")` for more info
## In both -* checking whether package ‘BSTZINB’ can be installed ... ERROR +* checking whether package ‘rstanarm’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/BSTZINB/new/BSTZINB.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. ``` ## Installation @@ -1065,54 +1119,67 @@ Run `revdepcheck::cloud_details(, "BSTZINB")` for more info ### Devel ``` -* installing *source* package ‘BSTZINB’ ... -** package ‘BSTZINB’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BSTZINB’ -* removing ‘/tmp/workdir/BSTZINB/new/BSTZINB.Rcheck/BSTZINB’ +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 +"/opt/R/4.4.0/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stan_files/continuous.o] Error 1 +rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ ``` ### CRAN ``` -* installing *source* package ‘BSTZINB’ ... -** package ‘BSTZINB’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘BSTZINB’ -* removing ‘/tmp/workdir/BSTZINB/old/BSTZINB.Rcheck/BSTZINB’ +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 +"/opt/R/4.4.0/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stan_files/continuous.o] Error 1 +rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ ``` -# BuyseTest +# StatTeacherAssistant
-* Version: 3.0.5 -* GitHub: https://github.com/bozenne/BuyseTest -* Source code: https://github.com/cran/BuyseTest -* Date/Publication: 2024-10-13 21:40:02 UTC -* Number of recursive dependencies: 132 +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/StatTeacherAssistant +* Number of recursive dependencies: 124 -Run `revdepcheck::cloud_details(, "BuyseTest")` for more info +Run `revdepcheck::cloud_details(, "StatTeacherAssistant")` for more info
@@ -1121,27 +1188,7 @@ Run `revdepcheck::cloud_details(, "BuyseTest")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/BuyseTest/new/BuyseTest.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘BuyseTest/DESCRIPTION’ ... OK -... -* this is package ‘BuyseTest’ version ‘3.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR @@ -1151,44 +1198,24 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/BuyseTest/old/BuyseTest.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘BuyseTest/DESCRIPTION’ ... OK -... -* this is package ‘BuyseTest’ version ‘3.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR ``` -# CAESAR.Suite +# streamDAG
-* Version: 0.1.0 -* GitHub: https://github.com/XiaoZhangryy/CAESAR.Suite -* Source code: https://github.com/cran/CAESAR.Suite -* Date/Publication: 2024-09-16 14:20:06 UTC -* Number of recursive dependencies: 269 +* Version: 1.5-9 +* GitHub: NA +* Source code: https://github.com/cran/streamDAG +* Date/Publication: 2025-01-14 21:50:02 UTC +* Number of recursive dependencies: 137 -Run `revdepcheck::cloud_details(, "CAESAR.Suite")` for more info +Run `revdepcheck::cloud_details(, "streamDAG")` for more info
@@ -1197,22 +1224,20 @@ Run `revdepcheck::cloud_details(, "CAESAR.Suite")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/CAESAR.Suite/new/CAESAR.Suite.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) +* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘CAESAR.Suite/DESCRIPTION’ ... OK -... -* this is package ‘CAESAR.Suite’ version ‘0.1.0’ -* package encoding: UTF-8 +* checking for file ‘streamDAG/DESCRIPTION’ ... OK +* this is package ‘streamDAG’ version ‘1.5-9’ * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘ProFAST’ +Package required but not available: ‘asbio’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -1227,22 +1252,20 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/CAESAR.Suite/old/CAESAR.Suite.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) +* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘CAESAR.Suite/DESCRIPTION’ ... OK -... -* this is package ‘CAESAR.Suite’ version ‘0.1.0’ -* package encoding: UTF-8 +* checking for file ‘streamDAG/DESCRIPTION’ ... OK +* this is package ‘streamDAG’ version ‘1.5-9’ * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘ProFAST’ +Package required but not available: ‘asbio’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -1254,26 +1277,26 @@ Status: 1 ERROR ``` -# CARBayesST +# tidydr
-* Version: 4.0 -* GitHub: https://github.com/duncanplee/CARBayesST -* Source code: https://github.com/cran/CARBayesST -* Date/Publication: 2023-10-30 16:40:02 UTC -* Number of recursive dependencies: 106 +* Version: 0.0.5 +* GitHub: https://github.com/YuLab-SMU/tidydr +* Source code: https://github.com/cran/tidydr +* Date/Publication: 2023-03-08 09:20:02 UTC +* Number of recursive dependencies: 76 -Run `revdepcheck::cloud_details(, "CARBayesST")` for more info +Run `revdepcheck::cloud_details(, "tidydr")` for more info
-## In both +## Newly broken -* checking whether package ‘CARBayesST’ can be installed ... ERROR +* checking whether package ‘tidydr’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/CARBayesST/new/CARBayesST.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details. ``` ## Installation @@ -1281,71 +1304,68 @@ Run `revdepcheck::cloud_details(, "CARBayesST")` for more info ### Devel ``` -* installing *source* package ‘CARBayesST’ ... -** package ‘CARBayesST’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CARBayesST.cpp -o CARBayesST.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o CARBayesST.so CARBayesST.o RcppExports.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/CARBayesST/new/CARBayesST.Rcheck/00LOCK-CARBayesST/00new/CARBayesST/libs ** R ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in get(x, envir = ns, inherits = FALSE) : + object 'len0_null' not found +Error: unable to load R code in package ‘tidydr’ Execution halted -ERROR: lazy loading failed for package ‘CARBayesST’ -* removing ‘/tmp/workdir/CARBayesST/new/CARBayesST.Rcheck/CARBayesST’ +ERROR: lazy loading failed for package ‘tidydr’ +* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’ ``` ### CRAN ``` -* installing *source* package ‘CARBayesST’ ... -** package ‘CARBayesST’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CARBayesST.cpp -o CARBayesST.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o CARBayesST.so CARBayesST.o RcppExports.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/CARBayesST/old/CARBayesST.Rcheck/00LOCK-CARBayesST/00new/CARBayesST/libs ** R ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CARBayesST’ -* removing ‘/tmp/workdir/CARBayesST/old/CARBayesST.Rcheck/CARBayesST’ +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (tidydr) ``` -# Certara.VPCResults +# tricolore
-* Version: 3.0.2 -* GitHub: NA -* Source code: https://github.com/cran/Certara.VPCResults -* Date/Publication: 2024-12-02 15:30:02 UTC -* Number of recursive dependencies: 141 +* Version: 1.2.4 +* GitHub: https://github.com/jschoeley/tricolore +* Source code: https://github.com/cran/tricolore +* Date/Publication: 2024-05-15 15:00:02 UTC +* Number of recursive dependencies: 105 -Run `revdepcheck::cloud_details(, "Certara.VPCResults")` for more info +Run `revdepcheck::cloud_details(, "tricolore")` for more info
-## In both +## Newly broken -* checking whether package ‘Certara.VPCResults’ can be installed ... ERROR +* checking whether package ‘tricolore’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/Certara.VPCResults/new/Certara.VPCResults.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/tricolore/new/tricolore.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2 marked UTF-8 strings ``` ## Installation @@ -1353,59 +1373,66 @@ Run `revdepcheck::cloud_details(, "Certara.VPCResults")` for more info ### Devel ``` -* installing *source* package ‘Certara.VPCResults’ ... -** package ‘Certara.VPCResults’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tricolore’ ... +** package ‘tricolore’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: .onLoad failed in loadNamespace() for 'ggtern', details: + call: NULL + error: object properties are invalid: +- @lineend must be or , not S3 Execution halted -ERROR: lazy loading failed for package ‘Certara.VPCResults’ -* removing ‘/tmp/workdir/Certara.VPCResults/new/Certara.VPCResults.Rcheck/Certara.VPCResults’ +ERROR: lazy loading failed for package ‘tricolore’ +* removing ‘/tmp/workdir/tricolore/new/tricolore.Rcheck/tricolore’ ``` ### CRAN ``` -* installing *source* package ‘Certara.VPCResults’ ... -** package ‘Certara.VPCResults’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tricolore’ ... +** package ‘tricolore’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Certara.VPCResults’ -* removing ‘/tmp/workdir/Certara.VPCResults/old/Certara.VPCResults.Rcheck/Certara.VPCResults’ +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (tricolore) ``` -# CGPfunctions +# TriDimRegression
-* Version: 0.6.3 -* GitHub: https://github.com/ibecav/CGPfunctions -* Source code: https://github.com/cran/CGPfunctions -* Date/Publication: 2020-11-12 14:50:09 UTC -* Number of recursive dependencies: 155 +* Version: 1.0.2 +* GitHub: https://github.com/alexander-pastukhov/tridim-regression +* Source code: https://github.com/cran/TriDimRegression +* Date/Publication: 2023-09-13 14:10:03 UTC +* Number of recursive dependencies: 96 -Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info +Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info
## In both -* checking whether package ‘CGPfunctions’ can be installed ... ERROR +* checking whether package ‘TriDimRegression’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/00install.out’ for details. ``` ## Installation @@ -1413,11817 +1440,167 @@ Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info ### Devel ``` -* installing *source* package ‘CGPfunctions’ ... -** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked +* installing *source* package ‘TriDimRegression’ ... +** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘CGPfunctions’ -* removing ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/CGPfunctions’ +ERROR: configuration failed for package ‘TriDimRegression’ +* removing ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/TriDimRegression’ ``` ### CRAN ``` -* installing *source* package ‘CGPfunctions’ ... -** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked +* installing *source* package ‘TriDimRegression’ ... +** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘CGPfunctions’ -* removing ‘/tmp/workdir/CGPfunctions/old/CGPfunctions.Rcheck/CGPfunctions’ +ERROR: configuration failed for package ‘TriDimRegression’ +* removing ‘/tmp/workdir/TriDimRegression/old/TriDimRegression.Rcheck/TriDimRegression’ ``` -# cia +# webSDM
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cia -* Number of recursive dependencies: 122 +* Version: 1.1-5 +* GitHub: https://github.com/giopogg/webSDM +* Source code: https://github.com/cran/webSDM +* Date/Publication: 2024-06-24 12:10:02 UTC +* Number of recursive dependencies: 194 -Run `revdepcheck::cloud_details(, "cia")` for more info +Run `revdepcheck::cloud_details(, "webSDM")` for more info
-## Error before installation - -### Devel - -``` +## Newly broken +* checking whether package ‘webSDM’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/webSDM/new/webSDM.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘webSDM’ ... +** package ‘webSDM’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: .onLoad failed in loadNamespace() for 'rstan', details: + call: NULL + error: C stack usage 9963540 is too close to the limit +Execution halted +ERROR: lazy loading failed for package ‘webSDM’ +* removing ‘/tmp/workdir/webSDM/new/webSDM.Rcheck/webSDM’ ``` ### CRAN ``` - - - - +* installing *source* package ‘webSDM’ ... +** package ‘webSDM’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (webSDM) ``` -# cinaR +# xpose
-* Version: 0.2.3 -* GitHub: https://github.com/eonurk/cinaR -* Source code: https://github.com/cran/cinaR -* Date/Publication: 2022-05-18 14:00:09 UTC -* Number of recursive dependencies: 171 +* Version: 0.4.19 +* GitHub: https://github.com/UUPharmacometrics/xpose +* Source code: https://github.com/cran/xpose +* Date/Publication: 2025-01-07 20:00:02 UTC +* Number of recursive dependencies: 106 -Run `revdepcheck::cloud_details(, "cinaR")` for more info +Run `revdepcheck::cloud_details(, "xpose")` for more info
-## Error before installation +## Newly broken + +* checking whether package ‘xpose’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/xpose/new/xpose.Rcheck/00install.out’ for details. + ``` + +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/cinaR/new/cinaR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘cinaR/DESCRIPTION’ ... OK -... -* this is package ‘cinaR’ version ‘0.2.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'ChIPseeker', 'fgsea' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/cinaR/old/cinaR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘cinaR/DESCRIPTION’ ... OK -... -* this is package ‘cinaR’ version ‘0.2.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'ChIPseeker', 'fgsea' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# cmprskcoxmsm - -
- -* Version: 0.2.1 -* GitHub: NA -* Source code: https://github.com/cran/cmprskcoxmsm -* Date/Publication: 2021-09-04 05:50:02 UTC -* Number of recursive dependencies: 71 - -Run `revdepcheck::cloud_details(, "cmprskcoxmsm")` for more info - -
- -## In both - -* checking whether package ‘cmprskcoxmsm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘cmprskcoxmsm’ ... -** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘cmprskcoxmsm’ -* removing ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/cmprskcoxmsm’ - - -``` -### CRAN - -``` -* installing *source* package ‘cmprskcoxmsm’ ... -** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘cmprskcoxmsm’ -* removing ‘/tmp/workdir/cmprskcoxmsm/old/cmprskcoxmsm.Rcheck/cmprskcoxmsm’ - - -``` -# COMMA - -
- -* Version: 1.1.1 -* GitHub: NA -* Source code: https://github.com/cran/COMMA -* Date/Publication: 2024-12-13 21:10:02 UTC -* Number of recursive dependencies: 72 - -Run `revdepcheck::cloud_details(, "COMMA")` for more info - -
- -## In both - -* checking whether package ‘COMMA’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/COMMA/new/COMMA.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘COMMA’ ... -** package ‘COMMA’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘COMMA’ -* removing ‘/tmp/workdir/COMMA/new/COMMA.Rcheck/COMMA’ - - -``` -### CRAN - -``` -* installing *source* package ‘COMMA’ ... -** package ‘COMMA’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘COMMA’ -* removing ‘/tmp/workdir/COMMA/old/COMMA.Rcheck/COMMA’ - - -``` -# contsurvplot - -
- -* Version: 0.2.1 -* GitHub: https://github.com/RobinDenz1/contsurvplot -* Source code: https://github.com/cran/contsurvplot -* Date/Publication: 2023-08-15 08:00:03 UTC -* Number of recursive dependencies: 156 - -Run `revdepcheck::cloud_details(, "contsurvplot")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/contsurvplot/new/contsurvplot.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘contsurvplot/DESCRIPTION’ ... OK -... -* this is package ‘contsurvplot’ version ‘0.2.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/contsurvplot/old/contsurvplot.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘contsurvplot/DESCRIPTION’ ... OK -... -* this is package ‘contsurvplot’ version ‘0.2.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# counterfactuals - -
- -* Version: 0.1.6 -* GitHub: https://github.com/dandls/counterfactuals -* Source code: https://github.com/cran/counterfactuals -* Date/Publication: 2024-10-17 12:00:06 UTC -* Number of recursive dependencies: 217 - -Run `revdepcheck::cloud_details(, "counterfactuals")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/counterfactuals/new/counterfactuals.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘counterfactuals/DESCRIPTION’ ... OK -... -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘how-to-add-new-cf-methods.html.asis’ using ‘UTF-8’... OK - ‘introduction.html.asis’ using ‘UTF-8’... OK - ‘other_models.html.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/counterfactuals/old/counterfactuals.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘counterfactuals/DESCRIPTION’ ... OK -... -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘how-to-add-new-cf-methods.html.asis’ using ‘UTF-8’... OK - ‘introduction.html.asis’ using ‘UTF-8’... OK - ‘other_models.html.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# CRMetrics - -
- -* Version: 0.3.2 -* GitHub: https://github.com/khodosevichlab/CRMetrics -* Source code: https://github.com/cran/CRMetrics -* Date/Publication: 2024-11-08 00:20:06 UTC -* Number of recursive dependencies: 242 - -Run `revdepcheck::cloud_details(, "CRMetrics")` for more info - -
- -## In both - -* checking whether package ‘CRMetrics’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CRMetrics’ ... -** package ‘CRMetrics’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CRMetrics’ -* removing ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck/CRMetrics’ - - -``` -### CRAN - -``` -* installing *source* package ‘CRMetrics’ ... -** package ‘CRMetrics’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘CRMetrics’ -* removing ‘/tmp/workdir/CRMetrics/old/CRMetrics.Rcheck/CRMetrics’ - - -``` -# ctsem - -
- -* Version: 3.10.2 -* GitHub: https://github.com/cdriveraus/ctsem -* Source code: https://github.com/cran/ctsem -* Date/Publication: 2025-01-13 11:00:08 UTC -* Number of recursive dependencies: 160 - -Run `revdepcheck::cloud_details(, "ctsem")` for more info - -
- -## In both - -* checking whether package ‘ctsem’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ctsem’ ... -** package ‘ctsem’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 -ERROR: compilation failed for package ‘ctsem’ -* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ - - -``` -### CRAN - -``` -* installing *source* package ‘ctsem’ ... -** package ‘ctsem’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 -ERROR: compilation failed for package ‘ctsem’ -* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ - - -``` -# dartR.base - -
- -* Version: 0.98 -* GitHub: NA -* Source code: https://github.com/cran/dartR.base -* Date/Publication: 2024-09-19 13:20:02 UTC -* Number of recursive dependencies: 288 - -Run `revdepcheck::cloud_details(, "dartR.base")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.base/new/dartR.base.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.base/DESCRIPTION’ ... OK -... -* this is package ‘dartR.base’ version ‘0.98’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘SNPassoc’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.base/old/dartR.base.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.base/DESCRIPTION’ ... OK -... -* this is package ‘dartR.base’ version ‘0.98’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘SNPassoc’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dartR.captive - -
- -* Version: 0.75 -* GitHub: NA -* Source code: https://github.com/cran/dartR.captive -* Date/Publication: 2023-11-27 17:10:09 UTC -* Number of recursive dependencies: 152 - -Run `revdepcheck::cloud_details(, "dartR.captive")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.captive/new/dartR.captive.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.captive/DESCRIPTION’ ... OK -... -* this is package ‘dartR.captive’ version ‘0.75’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.captive/old/dartR.captive.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.captive/DESCRIPTION’ ... OK -... -* this is package ‘dartR.captive’ version ‘0.75’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dartR.popgen - -
- -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/dartR.popgen -* Date/Publication: 2024-06-27 23:20:04 UTC -* Number of recursive dependencies: 175 - -Run `revdepcheck::cloud_details(, "dartR.popgen")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.popgen/new/dartR.popgen.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.popgen/DESCRIPTION’ ... OK -... -* this is package ‘dartR.popgen’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.popgen/old/dartR.popgen.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.popgen/DESCRIPTION’ ... OK -... -* this is package ‘dartR.popgen’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dartR.sexlinked - -
- -* Version: 1.0.5 -* GitHub: NA -* Source code: https://github.com/cran/dartR.sexlinked -* Date/Publication: 2024-06-24 15:40:02 UTC -* Number of recursive dependencies: 120 - -Run `revdepcheck::cloud_details(, "dartR.sexlinked")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.sexlinked/new/dartR.sexlinked.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.sexlinked/DESCRIPTION’ ... OK -... -* this is package ‘dartR.sexlinked’ version ‘1.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.sexlinked/old/dartR.sexlinked.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.sexlinked/DESCRIPTION’ ... OK -... -* this is package ‘dartR.sexlinked’ version ‘1.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dartR.sim - -
- -* Version: 0.70 -* GitHub: https://github.com/green-striped-gecko/dartR.sim -* Source code: https://github.com/cran/dartR.sim -* Date/Publication: 2023-11-20 19:30:02 UTC -* Number of recursive dependencies: 133 - -Run `revdepcheck::cloud_details(, "dartR.sim")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.sim/new/dartR.sim.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.sim/DESCRIPTION’ ... OK -... -* this is package ‘dartR.sim’ version ‘0.70’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.sim/old/dartR.sim.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.sim/DESCRIPTION’ ... OK -... -* this is package ‘dartR.sim’ version ‘0.70’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dartR.spatial - -
- -* Version: 0.78 -* GitHub: NA -* Source code: https://github.com/cran/dartR.spatial -* Date/Publication: 2023-11-15 00:50:02 UTC -* Number of recursive dependencies: 168 - -Run `revdepcheck::cloud_details(, "dartR.spatial")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dartR.spatial/new/dartR.spatial.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.spatial/DESCRIPTION’ ... OK -... -* this is package ‘dartR.spatial’ version ‘0.78’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dartR.spatial/old/dartR.spatial.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dartR.spatial/DESCRIPTION’ ... OK -... -* this is package ‘dartR.spatial’ version ‘0.78’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘dartR.base’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# DepthProc - -
- -* Version: 2.1.5 -* GitHub: https://github.com/zzawadz/DepthProc -* Source code: https://github.com/cran/DepthProc -* Date/Publication: 2022-02-03 20:30:02 UTC -* Number of recursive dependencies: 133 - -Run `revdepcheck::cloud_details(, "DepthProc")` for more info - -
- -## In both - -* checking whether package ‘DepthProc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘DepthProc’ ... -** package ‘DepthProc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o -... -installing to /tmp/workdir/DepthProc/new/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘DepthProc’ -* removing ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/DepthProc’ - - -``` -### CRAN - -``` -* installing *source* package ‘DepthProc’ ... -** package ‘DepthProc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o -... -installing to /tmp/workdir/DepthProc/old/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘DepthProc’ -* removing ‘/tmp/workdir/DepthProc/old/DepthProc.Rcheck/DepthProc’ - - -``` -# DFD - -
- -* Version: 0.2.0 -* GitHub: https://github.com/MohmedSoudy/DFD -* Source code: https://github.com/cran/DFD -* Date/Publication: 2024-08-28 18:20:02 UTC -* Number of recursive dependencies: 207 - -Run `revdepcheck::cloud_details(, "DFD")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/DFD/new/DFD.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘DFD/DESCRIPTION’ ... OK -... -* this is package ‘DFD’ version ‘0.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘signatureSearch’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/DFD/old/DFD.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘DFD/DESCRIPTION’ ... OK -... -* this is package ‘DFD’ version ‘0.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘signatureSearch’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# dMrs - -
- -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/dMrs -* Date/Publication: 2025-01-21 15:40:05 UTC -* Number of recursive dependencies: 137 - -Run `revdepcheck::cloud_details(, "dMrs")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dMrs/new/dMrs.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dMrs/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... NONE -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘dMrs.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dMrs/old/dMrs.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dMrs/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... NONE -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘dMrs.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# DR.SC - -
- -* Version: 3.4 -* GitHub: https://github.com/feiyoung/DR.SC -* Source code: https://github.com/cran/DR.SC -* Date/Publication: 2024-03-19 08:40:02 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "DR.SC")` for more info - -
- -## In both - -* checking whether package ‘DR.SC’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘DR.SC’ ... -** package ‘DR.SC’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c getNB_fast.cpp -o getNB_fast.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job.cpp -o mt_paral_job.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job2.cpp -o mt_paral_job2.o -... -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘DR.SC’ -* removing ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/DR.SC’ - - -``` -### CRAN - -``` -* installing *source* package ‘DR.SC’ ... -** package ‘DR.SC’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c getNB_fast.cpp -o getNB_fast.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job.cpp -o mt_paral_job.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job2.cpp -o mt_paral_job2.o -... -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘DR.SC’ -* removing ‘/tmp/workdir/DR.SC/old/DR.SC.Rcheck/DR.SC’ - - -``` -# dscoreMSM - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/dscoreMSM -* Date/Publication: 2024-12-13 16:40:02 UTC -* Number of recursive dependencies: 121 - -Run `revdepcheck::cloud_details(, "dscoreMSM")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/dscoreMSM/new/dscoreMSM.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dscoreMSM/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘dscoreMSM.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/dscoreMSM/old/dscoreMSM.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘dscoreMSM/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘dscoreMSM.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# DynForest - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/DynForest -* Number of recursive dependencies: 143 - -Run `revdepcheck::cloud_details(, "DynForest")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# easybgm - -
- -* Version: 0.2.1 -* GitHub: https://github.com/KarolineHuth/easybgm -* Source code: https://github.com/cran/easybgm -* Date/Publication: 2024-10-17 08:30:02 UTC -* Number of recursive dependencies: 180 - -Run `revdepcheck::cloud_details(, "easybgm")` for more info - -
- -## In both - -* checking whether package ‘easybgm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/easybgm/new/easybgm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘easybgm’ ... -** package ‘easybgm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘easybgm’ -* removing ‘/tmp/workdir/easybgm/new/easybgm.Rcheck/easybgm’ - - -``` -### CRAN - -``` -* installing *source* package ‘easybgm’ ... -** package ‘easybgm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘easybgm’ -* removing ‘/tmp/workdir/easybgm/old/easybgm.Rcheck/easybgm’ - - -``` -# EcoEnsemble - -
- -* Version: 1.1.0 -* GitHub: https://github.com/CefasRepRes/EcoEnsemble -* Source code: https://github.com/cran/EcoEnsemble -* Date/Publication: 2024-08-19 17:20:06 UTC -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info - -
- -## In both - -* checking whether package ‘EcoEnsemble’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘EcoEnsemble’ ... -** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 -ERROR: compilation failed for package ‘EcoEnsemble’ -* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ - - -``` -### CRAN - -``` -* installing *source* package ‘EcoEnsemble’ ... -** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 -ERROR: compilation failed for package ‘EcoEnsemble’ -* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ - - -``` -# ecolottery - -
- -* Version: 1.0.0 -* GitHub: https://github.com/frmunoz/ecolottery -* Source code: https://github.com/cran/ecolottery -* Date/Publication: 2017-07-03 11:01:29 UTC -* Number of recursive dependencies: 87 - -Run `revdepcheck::cloud_details(, "ecolottery")` for more info - -
- -## In both - -* checking whether package ‘ecolottery’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ecolottery’ ... -** package ‘ecolottery’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ecolottery’ -* removing ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/ecolottery’ - - -``` -### CRAN - -``` -* installing *source* package ‘ecolottery’ ... -** package ‘ecolottery’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ecolottery’ -* removing ‘/tmp/workdir/ecolottery/old/ecolottery.Rcheck/ecolottery’ - - -``` -# EpiEstim - -
- -* Version: 2.2-4 -* GitHub: https://github.com/mrc-ide/EpiEstim -* Source code: https://github.com/cran/EpiEstim -* Date/Publication: 2021-01-07 16:20:10 UTC -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "EpiEstim")` for more info - -
- -## In both - -* checking whether package ‘EpiEstim’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘EpiEstim’ ... -** package ‘EpiEstim’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘EpiEstim’ -* removing ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/EpiEstim’ - - -``` -### CRAN - -``` -* installing *source* package ‘EpiEstim’ ... -** package ‘EpiEstim’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘EpiEstim’ -* removing ‘/tmp/workdir/EpiEstim/old/EpiEstim.Rcheck/EpiEstim’ - - -``` -# evolqg - -
- -* Version: 0.3-4 -* GitHub: https://github.com/lem-usp/evolqg -* Source code: https://github.com/cran/evolqg -* Date/Publication: 2023-12-05 15:20:12 UTC -* Number of recursive dependencies: 110 - -Run `revdepcheck::cloud_details(, "evolqg")` for more info - -
- -## In both - -* checking whether package ‘evolqg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘evolqg’ ... -** package ‘evolqg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/evolqg/new/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘evolqg’ -* removing ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/evolqg’ - - -``` -### CRAN - -``` -* installing *source* package ‘evolqg’ ... -** package ‘evolqg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/evolqg/old/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘evolqg’ -* removing ‘/tmp/workdir/evolqg/old/evolqg.Rcheck/evolqg’ - - -``` -# EWSmethods - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/EWSmethods -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "EWSmethods")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# flexrsurv - -
- -* Version: 2.0.18 -* GitHub: NA -* Source code: https://github.com/cran/flexrsurv -* Date/Publication: 2024-02-09 16:10:02 UTC -* Number of recursive dependencies: 129 - -Run `revdepcheck::cloud_details(, "flexrsurv")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/flexrsurv/new/flexrsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘flexrsurv/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/flexrsurv/old/flexrsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘flexrsurv/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -# fmx - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/fmx -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "fmx")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ForecastComb - -
- -* Version: 1.3.1 -* GitHub: https://github.com/ceweiss/ForecastComb -* Source code: https://github.com/cran/ForecastComb -* Date/Publication: 2018-08-07 13:50:08 UTC -* Number of recursive dependencies: 73 - -Run `revdepcheck::cloud_details(, "ForecastComb")` for more info - -
- -## In both - -* checking whether package ‘ForecastComb’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ForecastComb’ ... -** package ‘ForecastComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ForecastComb’ -* removing ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/ForecastComb’ - - -``` -### CRAN - -``` -* installing *source* package ‘ForecastComb’ ... -** package ‘ForecastComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ForecastComb’ -* removing ‘/tmp/workdir/ForecastComb/old/ForecastComb.Rcheck/ForecastComb’ - - -``` -# gap - -
- -* Version: 1.6 -* GitHub: https://github.com/jinghuazhao/R -* Source code: https://github.com/cran/gap -* Date/Publication: 2024-08-27 04:40:06 UTC -* Number of recursive dependencies: 177 - -Run `revdepcheck::cloud_details(, "gap")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/gap/new/gap.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘gap/DESCRIPTION’ ... OK -... ---- failed re-building ‘jss.Rnw’ - -SUMMARY: processing the following file failed: - ‘jss.Rnw’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 4 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/gap/old/gap.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘gap/DESCRIPTION’ ... OK -... ---- failed re-building ‘jss.Rnw’ - -SUMMARY: processing the following file failed: - ‘jss.Rnw’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 4 NOTEs - - - - - -``` -# gapfill - -
- -* Version: 0.9.6-1 -* GitHub: https://github.com/florafauna/gapfill -* Source code: https://github.com/cran/gapfill -* Date/Publication: 2021-02-12 10:10:05 UTC -* Number of recursive dependencies: 70 - -Run `revdepcheck::cloud_details(, "gapfill")` for more info - -
- -## In both - -* checking whether package ‘gapfill’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Packages which this enhances but not available for checking: - 'raster', 'doParallel', 'doMPI' - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘gapfill’ ... -** package ‘gapfill’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/gapfill/new/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘gapfill’ -* removing ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/gapfill’ - - -``` -### CRAN - -``` -* installing *source* package ‘gapfill’ ... -** package ‘gapfill’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/gapfill/old/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘gapfill’ -* removing ‘/tmp/workdir/gapfill/old/gapfill.Rcheck/gapfill’ - - -``` -# genekitr - -
- -* Version: 1.2.8 -* GitHub: https://github.com/GangLiLab/genekitr -* Source code: https://github.com/cran/genekitr -* Date/Publication: 2024-09-06 13:00:06 UTC -* Number of recursive dependencies: 199 - -Run `revdepcheck::cloud_details(, "genekitr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘genekitr/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -Package suggested but not available for checking: ‘fgsea’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘genekitr/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -Package suggested but not available for checking: ‘fgsea’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# GeneSelectR - -
- -* Version: 1.0.1 -* GitHub: https://github.com/dzhakparov/GeneSelectR -* Source code: https://github.com/cran/GeneSelectR -* Date/Publication: 2024-02-03 14:00:05 UTC -* Number of recursive dependencies: 183 - -Run `revdepcheck::cloud_details(, "GeneSelectR")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/GeneSelectR/new/GeneSelectR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘GeneSelectR/DESCRIPTION’ ... OK -... -+ build_vignettes = FALSE) - - When sourcing ‘example.R’: -Error: there is no package called ‘devtools’ -Execution halted - - ‘example.Rmd’ using ‘UTF-8’... failed -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 WARNING, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/GeneSelectR/old/GeneSelectR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘GeneSelectR/DESCRIPTION’ ... OK -... -+ build_vignettes = FALSE) - - When sourcing ‘example.R’: -Error: there is no package called ‘devtools’ -Execution halted - - ‘example.Rmd’ using ‘UTF-8’... failed -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 WARNING, 1 NOTE - - - - - -``` -# GeomComb - -
- -* Version: 1.0 -* GitHub: https://github.com/ceweiss/GeomComb -* Source code: https://github.com/cran/GeomComb -* Date/Publication: 2016-11-27 16:02:26 -* Number of recursive dependencies: 74 - -Run `revdepcheck::cloud_details(, "GeomComb")` for more info - -
- -## In both - -* checking whether package ‘GeomComb’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘GeomComb’ ... -** package ‘GeomComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘GeomComb’ -* removing ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/GeomComb’ - - -``` -### CRAN - -``` -* installing *source* package ‘GeomComb’ ... -** package ‘GeomComb’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘GeomComb’ -* removing ‘/tmp/workdir/GeomComb/old/GeomComb.Rcheck/GeomComb’ - - -``` -# geomorph - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/geomorph -* Number of recursive dependencies: 71 - -Run `revdepcheck::cloud_details(, "geomorph")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# GeoTox - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/GeoTox -* Number of recursive dependencies: 143 - -Run `revdepcheck::cloud_details(, "GeoTox")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ggtern - -
- -* Version: 3.5.0 -* GitHub: NA -* Source code: https://github.com/cran/ggtern -* Date/Publication: 2024-03-24 21:50:02 UTC -* Number of recursive dependencies: 42 - -Run `revdepcheck::cloud_details(, "ggtern")` for more info - -
- -## Newly broken - -* checking whether package ‘ggtern’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘chemometrics’ - ``` - -## In both - -* checking package dependencies ... NOTE - ``` - Package which this enhances but not available for checking: ‘sp’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ggtern’ ... -** package ‘ggtern’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -Error in get(x, envir = ns, inherits = FALSE) : - object 'update_guides' not found -Error: unable to load R code in package ‘ggtern’ -Execution halted -ERROR: lazy loading failed for package ‘ggtern’ -* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’ - - -``` -### CRAN - -``` -* installing *source* package ‘ggtern’ ... -** package ‘ggtern’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** demo -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (ggtern) - - -``` -# ggThemeAssist - -
- -* Version: 0.1.5 -* GitHub: https://github.com/calligross/ggthemeassist -* Source code: https://github.com/cran/ggThemeAssist -* Date/Publication: 2016-08-13 16:50:55 -* Number of recursive dependencies: 57 - -Run `revdepcheck::cloud_details(, "ggThemeAssist")` for more info - -
- -## Newly broken - -* checking whether package ‘ggThemeAssist’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ggThemeAssist/new/ggThemeAssist.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking LazyData ... NOTE - ``` - 'LazyData' is specified without a 'data' directory - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ggThemeAssist’ ... -** package ‘ggThemeAssist’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in is.element("extrafont", installed.packages()[, 1]) : - unused argument (installed.packages()[, 1]) -Error: unable to load R code in package ‘ggThemeAssist’ -Execution halted -ERROR: lazy loading failed for package ‘ggThemeAssist’ -* removing ‘/tmp/workdir/ggThemeAssist/new/ggThemeAssist.Rcheck/ggThemeAssist’ - - -``` -### CRAN - -``` -* installing *source* package ‘ggThemeAssist’ ... -** package ‘ggThemeAssist’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (ggThemeAssist) - - -``` -# gJLS2 - -
- -* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/gJLS2 -* Date/Publication: 2021-09-30 09:00:05 UTC -* Number of recursive dependencies: 45 - -Run `revdepcheck::cloud_details(, "gJLS2")` for more info - -
- -## In both - -* checking whether package ‘gJLS2’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘gJLS2’ ... -** package ‘gJLS2’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘gJLS2’ -* removing ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/gJLS2’ - - -``` -### CRAN - -``` -* installing *source* package ‘gJLS2’ ... -** package ‘gJLS2’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘gJLS2’ -* removing ‘/tmp/workdir/gJLS2/old/gJLS2.Rcheck/gJLS2’ - - -``` -# grandR - -
- -* Version: 0.2.6 -* GitHub: https://github.com/erhard-lab/grandR -* Source code: https://github.com/cran/grandR -* Date/Publication: 2025-01-22 22:10:02 UTC -* Number of recursive dependencies: 265 - -Run `revdepcheck::cloud_details(, "grandR")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘grandR/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘getting-started.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘grandR/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘getting-started.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -# GseaVis - -
- -* Version: 0.0.5 -* GitHub: https://github.com/junjunlab/GseaVis -* Source code: https://github.com/cran/GseaVis -* Date/Publication: 2022-12-20 19:40:07 UTC -* Number of recursive dependencies: 104 - -Run `revdepcheck::cloud_details(, "GseaVis")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/GseaVis/new/GseaVis.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘GseaVis/DESCRIPTION’ ... OK -... -* this is package ‘GseaVis’ version ‘0.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘DOSE’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/GseaVis/old/GseaVis.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘GseaVis/DESCRIPTION’ ... OK -... -* this is package ‘GseaVis’ version ‘0.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘DOSE’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# hettx - -
- -* Version: 0.1.3 -* GitHub: https://github.com/bfifield/hettx -* Source code: https://github.com/cran/hettx -* Date/Publication: 2023-08-19 22:22:34 UTC -* Number of recursive dependencies: 84 - -Run `revdepcheck::cloud_details(, "hettx")` for more info - -
- -## In both - -* checking whether package ‘hettx’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘hettx’ ... -** package ‘hettx’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘hettx’ -* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’ - - -``` -### CRAN - -``` -* installing *source* package ‘hettx’ ... -** package ‘hettx’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘hettx’ -* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’ - - -``` -# Hmisc - -
- -* Version: 5.2-2 -* GitHub: NA -* Source code: https://github.com/cran/Hmisc -* Date/Publication: 2025-01-10 23:30:03 UTC -* Number of recursive dependencies: 173 - -Run `revdepcheck::cloud_details(, "Hmisc")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/Hmisc/new/Hmisc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Hmisc/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: 4 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/Hmisc/old/Hmisc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Hmisc/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: 4 NOTEs - - - - - -``` -# Hmsc - -
- -* Version: 3.0-13 -* GitHub: https://github.com/hmsc-r/HMSC -* Source code: https://github.com/cran/Hmsc -* Date/Publication: 2022-08-11 14:10:14 UTC -* Number of recursive dependencies: 75 - -Run `revdepcheck::cloud_details(, "Hmsc")` for more info - -
- -## In both - -* checking whether package ‘Hmsc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Hmsc’ ... -** package ‘Hmsc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Hmsc’ -* removing ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/Hmsc’ - - -``` -### CRAN - -``` -* installing *source* package ‘Hmsc’ ... -** package ‘Hmsc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Hmsc’ -* removing ‘/tmp/workdir/Hmsc/old/Hmsc.Rcheck/Hmsc’ - - -``` -# iClusterVB - -
- -* Version: 0.1.4 -* GitHub: https://github.com/AbdalkarimA/iClusterVB -* Source code: https://github.com/cran/iClusterVB -* Date/Publication: 2024-12-09 19:50:06 UTC -* Number of recursive dependencies: 128 - -Run `revdepcheck::cloud_details(, "iClusterVB")` for more info - -
- -## In both - -* checking whether package ‘iClusterVB’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘iClusterVB’ ... -** package ‘iClusterVB’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c CAVI_algorithms.cpp -o CAVI_algorithms.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o iClusterVB.so CAVI_algorithms.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/00LOCK-iClusterVB/00new/iClusterVB/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iClusterVB’ -* removing ‘/tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/iClusterVB’ - - -``` -### CRAN - -``` -* installing *source* package ‘iClusterVB’ ... -** package ‘iClusterVB’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c CAVI_algorithms.cpp -o CAVI_algorithms.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o iClusterVB.so CAVI_algorithms.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/iClusterVB/old/iClusterVB.Rcheck/00LOCK-iClusterVB/00new/iClusterVB/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iClusterVB’ -* removing ‘/tmp/workdir/iClusterVB/old/iClusterVB.Rcheck/iClusterVB’ - - -``` -# immcp - -
- -* Version: 1.0.3 -* GitHub: https://github.com/YuanlongHu/immcp -* Source code: https://github.com/cran/immcp -* Date/Publication: 2022-05-12 05:50:02 UTC -* Number of recursive dependencies: 187 - -Run `revdepcheck::cloud_details(, "immcp")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘immcp/DESCRIPTION’ ... OK -... -* this is package ‘immcp’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'clusterProfiler', 'DOSE' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘immcp/DESCRIPTION’ ... OK -... -* this is package ‘immcp’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'clusterProfiler', 'DOSE' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# inventorize - -
- -* Version: 1.1.1 -* GitHub: NA -* Source code: https://github.com/cran/inventorize -* Date/Publication: 2022-05-31 22:20:09 UTC -* Number of recursive dependencies: 71 - -Run `revdepcheck::cloud_details(, "inventorize")` for more info - -
- -## Newly broken - -* checking whether package ‘inventorize’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘inventorize’ ... -** package ‘inventorize’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in pm[[2]] : subscript out of bounds -Error: unable to load R code in package ‘inventorize’ -Execution halted -ERROR: lazy loading failed for package ‘inventorize’ -* removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’ - - -``` -### CRAN - -``` -* installing *source* package ‘inventorize’ ... -** package ‘inventorize’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Warning in qgamma(service_level, alpha, beta) : NaNs produced -Warning in qgamma(service_level, alpha, beta) : NaNs produced -** help -*** installing help indices -** building package indices -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (inventorize) - - -``` -# invivoPKfit - -
- -* Version: 2.0.0 -* GitHub: NA -* Source code: https://github.com/cran/invivoPKfit -* Date/Publication: 2025-01-09 14:30:02 UTC -* Number of recursive dependencies: 172 - -Run `revdepcheck::cloud_details(, "invivoPKfit")` for more info - -
- -## In both - -* checking whether package ‘invivoPKfit’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/invivoPKfit/new/invivoPKfit.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘invivoPKfit’ ... -** package ‘invivoPKfit’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘expand1’ is not exported by 'namespace:Matrix' -Execution halted -ERROR: lazy loading failed for package ‘invivoPKfit’ -* removing ‘/tmp/workdir/invivoPKfit/new/invivoPKfit.Rcheck/invivoPKfit’ - - -``` -### CRAN - -``` -* installing *source* package ‘invivoPKfit’ ... -** package ‘invivoPKfit’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘expand1’ is not exported by 'namespace:Matrix' -Execution halted -ERROR: lazy loading failed for package ‘invivoPKfit’ -* removing ‘/tmp/workdir/invivoPKfit/old/invivoPKfit.Rcheck/invivoPKfit’ - - -``` -# iNZightPlots - -
- -* Version: 2.15.3 -* GitHub: https://github.com/iNZightVIT/iNZightPlots -* Source code: https://github.com/cran/iNZightPlots -* Date/Publication: 2023-10-14 05:00:02 UTC -* Number of recursive dependencies: 161 - -Run `revdepcheck::cloud_details(, "iNZightPlots")` for more info - -
- -## In both - -* checking whether package ‘iNZightPlots’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘iNZightPlots’ ... -** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightPlots’ -* removing ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/iNZightPlots’ - - -``` -### CRAN - -``` -* installing *source* package ‘iNZightPlots’ ... -** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightPlots’ -* removing ‘/tmp/workdir/iNZightPlots/old/iNZightPlots.Rcheck/iNZightPlots’ - - -``` -# iNZightRegression - -
- -* Version: 1.3.4 -* GitHub: https://github.com/iNZightVIT/iNZightRegression -* Source code: https://github.com/cran/iNZightRegression -* Date/Publication: 2024-04-05 02:32:59 UTC -* Number of recursive dependencies: 162 - -Run `revdepcheck::cloud_details(, "iNZightRegression")` for more info - -
- -## In both - -* checking whether package ‘iNZightRegression’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘iNZightRegression’ ... -** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightRegression’ -* removing ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/iNZightRegression’ - - -``` -### CRAN - -``` -* installing *source* package ‘iNZightRegression’ ... -** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘iNZightRegression’ -* removing ‘/tmp/workdir/iNZightRegression/old/iNZightRegression.Rcheck/iNZightRegression’ - - -``` -# IRexamples - -
- -* Version: 0.0.4 -* GitHub: https://github.com/vinhdizzo/IRexamples -* Source code: https://github.com/cran/IRexamples -* Date/Publication: 2023-10-06 06:40:02 UTC -* Number of recursive dependencies: 180 - -Run `revdepcheck::cloud_details(, "IRexamples")` for more info - -
- -## In both - -* checking whether package ‘IRexamples’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘IRexamples’ ... -** package ‘IRexamples’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘IRexamples’ -* removing ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/IRexamples’ - - -``` -### CRAN - -``` -* installing *source* package ‘IRexamples’ ... -** package ‘IRexamples’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘IRexamples’ -* removing ‘/tmp/workdir/IRexamples/old/IRexamples.Rcheck/IRexamples’ - - -``` -# jmBIG - -
- -* Version: 0.1.3 -* GitHub: NA -* Source code: https://github.com/cran/jmBIG -* Date/Publication: 2025-01-19 21:00:02 UTC -* Number of recursive dependencies: 187 - -Run `revdepcheck::cloud_details(, "jmBIG")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/jmBIG/new/jmBIG.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘jmBIG/DESCRIPTION’ ... OK -... -* checking if there is a namespace ... OK -* checking for executable files ... OK -* checking for hidden files and directories ... OK -* checking for portable file names ... OK -* checking for sufficient/correct file permissions ... OK -* checking whether package ‘jmBIG’ can be installed ... ERROR -Installation failed. -See ‘/tmp/workdir/jmBIG/new/jmBIG.Rcheck/00install.out’ for details. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/jmBIG/old/jmBIG.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘jmBIG/DESCRIPTION’ ... OK -... -* checking if there is a namespace ... OK -* checking for executable files ... OK -* checking for hidden files and directories ... OK -* checking for portable file names ... OK -* checking for sufficient/correct file permissions ... OK -* checking whether package ‘jmBIG’ can be installed ... ERROR -Installation failed. -See ‘/tmp/workdir/jmBIG/old/jmBIG.Rcheck/00install.out’ for details. -* DONE -Status: 1 ERROR - - - - - -``` -# joineRML - -
- -* Version: 0.4.6 -* GitHub: https://github.com/graemeleehickey/joineRML -* Source code: https://github.com/cran/joineRML -* Date/Publication: 2023-01-20 04:50:02 UTC -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "joineRML")` for more info - -
- -## In both - -* checking whether package ‘joineRML’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘joineRML’ ... -** package ‘joineRML’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘joineRML’ -* removing ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/joineRML’ - - -``` -### CRAN - -``` -* installing *source* package ‘joineRML’ ... -** package ‘joineRML’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘joineRML’ -* removing ‘/tmp/workdir/joineRML/old/joineRML.Rcheck/joineRML’ - - -``` -# jsmodule - -
- -* Version: 1.6.1 -* GitHub: https://github.com/jinseob2kim/jsmodule -* Source code: https://github.com/cran/jsmodule -* Date/Publication: 2025-01-08 13:10:02 UTC -* Number of recursive dependencies: 241 - -Run `revdepcheck::cloud_details(, "jsmodule")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/jsmodule/new/jsmodule.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘jsmodule/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘jsmodule.Rmd’ using ‘UTF-8’... OK - ‘jsmodule_subgroup_cmprsk.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/jsmodule/old/jsmodule.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘jsmodule/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘jsmodule.Rmd’ using ‘UTF-8’... OK - ‘jsmodule_subgroup_cmprsk.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# kmc - -
- -* Version: 0.4-2 -* GitHub: https://github.com/yfyang86/kmc -* Source code: https://github.com/cran/kmc -* Date/Publication: 2022-11-22 08:30:02 UTC -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "kmc")` for more info - -
- -## In both - -* checking whether package ‘kmc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/kmc/new/kmc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘kmc’ ... -** package ‘kmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/kmc/new/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘kmc’ -* removing ‘/tmp/workdir/kmc/new/kmc.Rcheck/kmc’ - - -``` -### CRAN - -``` -* installing *source* package ‘kmc’ ... -** package ‘kmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/kmc/old/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘kmc’ -* removing ‘/tmp/workdir/kmc/old/kmc.Rcheck/kmc’ - - -``` -# KMunicate - -
- -* Version: 0.2.5 -* GitHub: https://github.com/ellessenne/KMunicate-package -* Source code: https://github.com/cran/KMunicate -* Date/Publication: 2024-05-16 11:50:08 UTC -* Number of recursive dependencies: 171 - -Run `revdepcheck::cloud_details(, "KMunicate")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/KMunicate/new/KMunicate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘KMunicate/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘KMunicate.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/KMunicate/old/KMunicate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘KMunicate/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘KMunicate.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# L2E - -
- -* Version: 2.0 -* GitHub: NA -* Source code: https://github.com/cran/L2E -* Date/Publication: 2022-09-08 21:13:00 UTC -* Number of recursive dependencies: 65 - -Run `revdepcheck::cloud_details(, "L2E")` for more info - -
- -## In both - -* checking whether package ‘L2E’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/L2E/new/L2E.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘L2E’ ... -** package ‘L2E’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required -Execution halted -ERROR: lazy loading failed for package ‘L2E’ -* removing ‘/tmp/workdir/L2E/new/L2E.Rcheck/L2E’ - - -``` -### CRAN - -``` -* installing *source* package ‘L2E’ ... -** package ‘L2E’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required -Execution halted -ERROR: lazy loading failed for package ‘L2E’ -* removing ‘/tmp/workdir/L2E/old/L2E.Rcheck/L2E’ - - -``` -# Landmarking - -
- -* Version: 1.0.0 -* GitHub: https://github.com/isobelbarrott/Landmarking -* Source code: https://github.com/cran/Landmarking -* Date/Publication: 2022-02-15 20:00:07 UTC -* Number of recursive dependencies: 122 - -Run `revdepcheck::cloud_details(, "Landmarking")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/Landmarking/new/Landmarking.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Landmarking/DESCRIPTION’ ... OK -... -* this is package ‘Landmarking’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/Landmarking/old/Landmarking.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Landmarking/DESCRIPTION’ ... OK -... -* this is package ‘Landmarking’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# lavaSearch2 - -
- -* Version: 2.0.3 -* GitHub: https://github.com/bozenne/lavaSearch2 -* Source code: https://github.com/cran/lavaSearch2 -* Date/Publication: 2024-02-23 09:10:02 UTC -* Number of recursive dependencies: 149 - -Run `revdepcheck::cloud_details(, "lavaSearch2")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/lavaSearch2/new/lavaSearch2.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lavaSearch2/DESCRIPTION’ ... OK -... - [ FAIL 1 | WARN 1 | SKIP 0 | PASS 266 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘overview.pdf.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/lavaSearch2/old/lavaSearch2.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lavaSearch2/DESCRIPTION’ ... OK -... - [ FAIL 1 | WARN 1 | SKIP 0 | PASS 266 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘overview.pdf.asis’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -# llbayesireg - -
- -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/llbayesireg -* Date/Publication: 2019-04-04 16:20:03 UTC -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "llbayesireg")` for more info - -
- -## In both - -* checking whether package ‘llbayesireg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/llbayesireg/new/llbayesireg.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘llbayesireg’ ... -** package ‘llbayesireg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘llbayesireg’ -* removing ‘/tmp/workdir/llbayesireg/new/llbayesireg.Rcheck/llbayesireg’ - - -``` -### CRAN - -``` -* installing *source* package ‘llbayesireg’ ... -** package ‘llbayesireg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘llbayesireg’ -* removing ‘/tmp/workdir/llbayesireg/old/llbayesireg.Rcheck/llbayesireg’ - - -``` -# lnmixsurv - -
- -* Version: 3.1.6 -* GitHub: NA -* Source code: https://github.com/cran/lnmixsurv -* Date/Publication: 2024-09-03 15:20:08 UTC -* Number of recursive dependencies: 195 - -Run `revdepcheck::cloud_details(, "lnmixsurv")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/lnmixsurv/new/lnmixsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK -... ---- finished re-building ‘parallel_computation.Rmd’ - -SUMMARY: processing the following file failed: - ‘expectation_maximization.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 2 ERRORs, 5 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/lnmixsurv/old/lnmixsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘lnmixsurv/DESCRIPTION’ ... OK -... -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘compare.Rmd’ using ‘UTF-8’... OK - ‘expectation_maximization.Rmd’ using ‘UTF-8’... OK - ‘intercept_only.Rmd’ using ‘UTF-8’... OK - ‘lnmixsurv.Rmd’ using ‘UTF-8’... OK - ‘parallel_computation.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 4 NOTEs - - - - - -``` -# LorenzRegression - -
- -* Version: 2.1.0 -* GitHub: https://github.com/AlJacq/LorenzRegression -* Source code: https://github.com/cran/LorenzRegression -* Date/Publication: 2024-10-11 16:50:02 UTC -* Number of recursive dependencies: 83 - -Run `revdepcheck::cloud_details(, "LorenzRegression")` for more info - -
- -## In both - -* checking whether package ‘LorenzRegression’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘LorenzRegression’ ... -** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘LorenzRegression’ -* removing ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/LorenzRegression’ - - -``` -### CRAN - -``` -* installing *source* package ‘LorenzRegression’ ... -** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘LorenzRegression’ -* removing ‘/tmp/workdir/LorenzRegression/old/LorenzRegression.Rcheck/LorenzRegression’ - - -``` -# lsirm12pl - -
- -* Version: 1.3.3 -* GitHub: NA -* Source code: https://github.com/cran/lsirm12pl -* Date/Publication: 2024-08-28 23:00:02 UTC -* Number of recursive dependencies: 123 - -Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info - -
- -## In both - -* checking whether package ‘lsirm12pl’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘lsirm12pl’ ... -** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o -... -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘lsirm12pl’ -* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’ - - -``` -### CRAN - -``` -* installing *source* package ‘lsirm12pl’ ... -** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o -... -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘lsirm12pl’ -* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’ - - -``` -# MantaID - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MantaID -* Number of recursive dependencies: 157 - -Run `revdepcheck::cloud_details(, "MantaID")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MARVEL - -
- -* Version: 1.4.0 -* GitHub: NA -* Source code: https://github.com/cran/MARVEL -* Date/Publication: 2022-10-31 10:22:50 UTC -* Number of recursive dependencies: 229 - -Run `revdepcheck::cloud_details(, "MARVEL")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/MARVEL/new/MARVEL.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘MARVEL/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘MARVEL.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/MARVEL/old/MARVEL.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘MARVEL/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘MARVEL.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# MaxWiK - -
- -* Version: 1.0.5 -* GitHub: NA -* Source code: https://github.com/cran/MaxWiK -* Date/Publication: 2024-11-25 11:40:13 UTC -* Number of recursive dependencies: 57 - -Run `revdepcheck::cloud_details(, "MaxWiK")` for more info - -
- -## In both - -* checking whether package ‘MaxWiK’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/MaxWiK/new/MaxWiK.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘MaxWiK’ ... -** package ‘MaxWiK’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MaxWiK’ -* removing ‘/tmp/workdir/MaxWiK/new/MaxWiK.Rcheck/MaxWiK’ - - -``` -### CRAN - -``` -* installing *source* package ‘MaxWiK’ ... -** package ‘MaxWiK’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MaxWiK’ -* removing ‘/tmp/workdir/MaxWiK/old/MaxWiK.Rcheck/MaxWiK’ - - -``` -# mbsts - -
- -* Version: 3.0 -* GitHub: NA -* Source code: https://github.com/cran/mbsts -* Date/Publication: 2023-01-07 01:10:02 UTC -* Number of recursive dependencies: 81 - -Run `revdepcheck::cloud_details(, "mbsts")` for more info - -
- -## In both - -* checking whether package ‘mbsts’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘mbsts’ ... -** package ‘mbsts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘mbsts’ -* removing ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/mbsts’ - - -``` -### CRAN - -``` -* installing *source* package ‘mbsts’ ... -** package ‘mbsts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘mbsts’ -* removing ‘/tmp/workdir/mbsts/old/mbsts.Rcheck/mbsts’ - - -``` -# MendelianRandomization - -
- -* Version: 0.10.0 -* GitHub: NA -* Source code: https://github.com/cran/MendelianRandomization -* Date/Publication: 2024-04-12 10:10:02 UTC -* Number of recursive dependencies: 88 - -Run `revdepcheck::cloud_details(, "MendelianRandomization")` for more info - -
- -## In both - -* checking whether package ‘MendelianRandomization’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘MendelianRandomization’ ... -** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MendelianRandomization’ -* removing ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/MendelianRandomization’ - - -``` -### CRAN - -``` -* installing *source* package ‘MendelianRandomization’ ... -** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MendelianRandomization’ -* removing ‘/tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/MendelianRandomization’ - - -``` -# miWQS - -
- -* Version: 0.4.4 -* GitHub: https://github.com/phargarten2/miWQS -* Source code: https://github.com/cran/miWQS -* Date/Publication: 2021-04-02 21:50:02 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "miWQS")` for more info - -
- -## In both - -* checking whether package ‘miWQS’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘wqs’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘miWQS’ ... -** package ‘miWQS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘miWQS’ -* removing ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/miWQS’ - - -``` -### CRAN - -``` -* installing *source* package ‘miWQS’ ... -** package ‘miWQS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘miWQS’ -* removing ‘/tmp/workdir/miWQS/old/miWQS.Rcheck/miWQS’ - - -``` -# mlmts - -
- -* Version: 1.1.2 -* GitHub: NA -* Source code: https://github.com/cran/mlmts -* Date/Publication: 2024-08-18 08:40:06 UTC -* Number of recursive dependencies: 244 - -Run `revdepcheck::cloud_details(, "mlmts")` for more info - -
- -## In both - -* checking whether package ‘mlmts’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘mlmts’ ... -** package ‘mlmts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Error: unable to load R code in package ‘mlmts’ -Execution halted -ERROR: lazy loading failed for package ‘mlmts’ -* removing ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/mlmts’ - - -``` -### CRAN - -``` -* installing *source* package ‘mlmts’ ... -** package ‘mlmts’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Error: unable to load R code in package ‘mlmts’ -Execution halted -ERROR: lazy loading failed for package ‘mlmts’ -* removing ‘/tmp/workdir/mlmts/old/mlmts.Rcheck/mlmts’ - - -``` -# mlr - -
- -* Version: 2.19.2 -* GitHub: https://github.com/mlr-org/mlr -* Source code: https://github.com/cran/mlr -* Date/Publication: 2024-06-12 10:50:02 UTC -* Number of recursive dependencies: 365 - -Run `revdepcheck::cloud_details(, "mlr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/mlr/new/mlr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘mlr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘mlr.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 WARNING, 3 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/mlr/old/mlr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘mlr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘mlr.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -# MRZero - -
- -* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/MRZero -* Date/Publication: 2024-04-14 09:30:03 UTC -* Number of recursive dependencies: 82 - -Run `revdepcheck::cloud_details(, "MRZero")` for more info - -
- -## In both - -* checking whether package ‘MRZero’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘MRZero’ ... -** package ‘MRZero’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MRZero’ -* removing ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/MRZero’ - - -``` -### CRAN - -``` -* installing *source* package ‘MRZero’ ... -** package ‘MRZero’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MRZero’ -* removing ‘/tmp/workdir/MRZero/old/MRZero.Rcheck/MRZero’ - - -``` -# mstate - -
- -* Version: 0.3.3 -* GitHub: https://github.com/hputter/mstate -* Source code: https://github.com/cran/mstate -* Date/Publication: 2024-07-11 21:30:06 UTC -* Number of recursive dependencies: 113 - -Run `revdepcheck::cloud_details(, "mstate")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/mstate/new/mstate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘mstate/DESCRIPTION’ ... OK -... ---- failed re-building ‘Tutorial.Rnw’ - -SUMMARY: processing the following file failed: - ‘Tutorial.Rnw’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/mstate/old/mstate.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘mstate/DESCRIPTION’ ... OK -... ---- failed re-building ‘Tutorial.Rnw’ - -SUMMARY: processing the following file failed: - ‘Tutorial.Rnw’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 NOTE - - - - - -``` -# multilevelTools - -
- -* Version: 0.1.1 -* GitHub: https://github.com/JWiley/multilevelTools -* Source code: https://github.com/cran/multilevelTools -* Date/Publication: 2020-03-04 09:50:02 UTC -* Number of recursive dependencies: 170 - -Run `revdepcheck::cloud_details(, "multilevelTools")` for more info - -
- -## In both - -* checking whether package ‘multilevelTools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘multilevelTools’ ... -** package ‘multilevelTools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘multilevelTools’ -* removing ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/multilevelTools’ - - -``` -### CRAN - -``` -* installing *source* package ‘multilevelTools’ ... -** package ‘multilevelTools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘multilevelTools’ -* removing ‘/tmp/workdir/multilevelTools/old/multilevelTools.Rcheck/multilevelTools’ - - -``` -# multinma - -
- -* Version: 0.7.2 -* GitHub: https://github.com/dmphillippo/multinma -* Source code: https://github.com/cran/multinma -* Date/Publication: 2024-09-16 12:20:02 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "multinma")` for more info - -
- -## In both - -* checking whether package ‘multinma’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘multinma’ ... -** package ‘multinma’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1 -ERROR: compilation failed for package ‘multinma’ -* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ - - -``` -### CRAN - -``` -* installing *source* package ‘multinma’ ... -** package ‘multinma’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1 -ERROR: compilation failed for package ‘multinma’ -* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ - - -``` -# multipleOutcomes - -
- -* Version: 0.4 -* GitHub: NA -* Source code: https://github.com/cran/multipleOutcomes -* Date/Publication: 2024-05-30 15:00:03 UTC -* Number of recursive dependencies: 176 - -Run `revdepcheck::cloud_details(, "multipleOutcomes")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/multipleOutcomes/new/multipleOutcomes.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘multipleOutcomes/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘test.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/multipleOutcomes/old/multipleOutcomes.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘multipleOutcomes/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘test.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# MuPETFlow - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/MuPETFlow -* Date/Publication: 2025-01-15 19:40:19 UTC -* Number of recursive dependencies: 85 - -Run `revdepcheck::cloud_details(, "MuPETFlow")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/MuPETFlow/new/MuPETFlow.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘MuPETFlow/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘MuPETFlow.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/MuPETFlow/old/MuPETFlow.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘MuPETFlow/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘MuPETFlow.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# NCA - -
- -* Version: 4.0.2 -* GitHub: NA -* Source code: https://github.com/cran/NCA -* Date/Publication: 2024-11-09 18:10:02 UTC -* Number of recursive dependencies: 98 - -Run `revdepcheck::cloud_details(, "NCA")` for more info - -
- -## In both - -* checking whether package ‘NCA’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/NCA/new/NCA.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NCA’ ... -** package ‘NCA’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NCA’ -* removing ‘/tmp/workdir/NCA/new/NCA.Rcheck/NCA’ - - -``` -### CRAN - -``` -* installing *source* package ‘NCA’ ... -** package ‘NCA’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NCA’ -* removing ‘/tmp/workdir/NCA/old/NCA.Rcheck/NCA’ - - -``` -# netcmc - -
- -* Version: 1.0.2 -* GitHub: NA -* Source code: https://github.com/cran/netcmc -* Date/Publication: 2022-11-08 22:30:15 UTC -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "netcmc")` for more info - -
- -## In both - -* checking whether package ‘netcmc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘netcmc’ ... -** package ‘netcmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o -... -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/netcmc/new/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘netcmc’ -* removing ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/netcmc’ - - -``` -### CRAN - -``` -* installing *source* package ‘netcmc’ ... -** package ‘netcmc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o -... -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/netcmc/old/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘netcmc’ -* removing ‘/tmp/workdir/netcmc/old/netcmc.Rcheck/netcmc’ - - -``` -# NetworkChange - -
- -* Version: 0.8 -* GitHub: https://github.com/jongheepark/NetworkChange -* Source code: https://github.com/cran/NetworkChange -* Date/Publication: 2022-03-04 07:30:02 UTC -* Number of recursive dependencies: 122 - -Run `revdepcheck::cloud_details(, "NetworkChange")` for more info - -
- -## In both - -* checking whether package ‘NetworkChange’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NetworkChange’ ... -** package ‘NetworkChange’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘NetworkChange’ -* removing ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/NetworkChange’ - - -``` -### CRAN - -``` -* installing *source* package ‘NetworkChange’ ... -** package ‘NetworkChange’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘NetworkChange’ -* removing ‘/tmp/workdir/NetworkChange/old/NetworkChange.Rcheck/NetworkChange’ - - -``` -# nlmeVPC - -
- -* Version: 2.6 -* GitHub: NA -* Source code: https://github.com/cran/nlmeVPC -* Date/Publication: 2022-12-22 05:20:02 UTC -* Number of recursive dependencies: 77 - -Run `revdepcheck::cloud_details(, "nlmeVPC")` for more info - -
- -## In both - -* checking whether package ‘nlmeVPC’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘nlmeVPC’ ... -** package ‘nlmeVPC’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Misc.cpp -o Misc.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nlmeVPC.so Misc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/00LOCK-nlmeVPC/00new/nlmeVPC/libs -** R -** data -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘nlmeVPC’ -* removing ‘/tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/nlmeVPC’ - - -``` -### CRAN - -``` -* installing *source* package ‘nlmeVPC’ ... -** package ‘nlmeVPC’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Misc.cpp -o Misc.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nlmeVPC.so Misc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/nlmeVPC/old/nlmeVPC.Rcheck/00LOCK-nlmeVPC/00new/nlmeVPC/libs -** R -** data -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘nlmeVPC’ -* removing ‘/tmp/workdir/nlmeVPC/old/nlmeVPC.Rcheck/nlmeVPC’ - - -``` -# NMADiagT - -
- -* Version: 0.1.2 -* GitHub: NA -* Source code: https://github.com/cran/NMADiagT -* Date/Publication: 2020-02-26 07:00:02 UTC -* Number of recursive dependencies: 78 - -Run `revdepcheck::cloud_details(, "NMADiagT")` for more info - -
- -## In both - -* checking whether package ‘NMADiagT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NMADiagT’ ... -** package ‘NMADiagT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NMADiagT’ -* removing ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/NMADiagT’ - - -``` -### CRAN - -``` -* installing *source* package ‘NMADiagT’ ... -** package ‘NMADiagT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘NMADiagT’ -* removing ‘/tmp/workdir/NMADiagT/old/NMADiagT.Rcheck/NMADiagT’ - - -``` -# NMF - -
- -* Version: 0.28 -* GitHub: NA -* Source code: https://github.com/cran/NMF -* Date/Publication: 2024-08-22 16:20:01 UTC -* Number of recursive dependencies: 132 - -Run `revdepcheck::cloud_details(, "NMF")` for more info - -
- -## Newly broken - -* checking whether package ‘NMF’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/NMF/new/NMF.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking re-building of vignette outputs ... NOTE - ``` - Error(s) in re-building vignettes: - --- re-building ‘NMF-vignette.Rnw’ using knitr - Error in citation(x) : there is no package called 'doMC' - Converted 9 of 10 package citations to BibTeX - Writing 11 Bibtex entries ... OK - Results written to file 'Rpackages.bib' - Error: processing vignette 'NMF-vignette.Rnw' failed with diagnostics: - Running 'texi2dvi' on 'NMF-vignette.tex' failed. - LaTeX errors: - ! LaTeX Error: File `a4wide.sty' not found. - ... - l.62 \usepackage - {xspace}^^M - ! ==> Fatal error occurred, no output PDF file produced! - --- failed re-building ‘heatmaps.Rnw’ - - SUMMARY: processing the following files failed: - ‘NMF-vignette.Rnw’ ‘heatmaps.Rnw’ - - Error: Vignette re-building failed. - Execution halted - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NMF’ ... -** package ‘NMF’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c distance.cpp -o distance.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c divergence.cpp -o divergence.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c euclidean.cpp -o euclidean.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -... -Creating meta registry in package 'NMF' ... OK -Creating registry 'extra_handler' in package 'NMF' ... OK -Creating registry 'extra_action' in package 'NMF' ... OK -Registering extra handler 'install.packages' [function] ... OK -Creating registry 'algorithm' in package 'NMF' ... OK -Error in is.element("...", n.update) : unused argument (n.update) -Error: unable to load R code in package ‘NMF’ -Execution halted -ERROR: lazy loading failed for package ‘NMF’ -* removing ‘/tmp/workdir/NMF/new/NMF.Rcheck/NMF’ - - -``` -### CRAN - -``` -* installing *source* package ‘NMF’ ... -** package ‘NMF’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c distance.cpp -o distance.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c divergence.cpp -o divergence.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c euclidean.cpp -o euclidean.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -... -Registering NMF seeding method 'nndsvd' [NMFSeed] ... OK -** help -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** checking absolute paths in shared objects and dynamic libraries -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (NMF) - - -``` -# obliqueRSF - -
- -* Version: 0.1.2 -* GitHub: NA -* Source code: https://github.com/cran/obliqueRSF -* Date/Publication: 2022-08-28 20:50:02 UTC -* Number of recursive dependencies: 117 - -Run `revdepcheck::cloud_details(, "obliqueRSF")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/obliqueRSF/new/obliqueRSF.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘obliqueRSF/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/obliqueRSF/old/obliqueRSF.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘obliqueRSF/DESCRIPTION’ ... OK -... -* checking for missing documentation entries ... OK -* checking for code/documentation mismatches ... OK -* checking Rd \usage sections ... OK -* checking Rd contents ... OK -* checking for unstated dependencies in examples ... OK -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -# OlinkAnalyze - -
- -* Version: 4.0.2 -* GitHub: https://github.com/Olink-Proteomics/OlinkRPackage -* Source code: https://github.com/cran/OlinkAnalyze -* Date/Publication: 2024-11-22 16:20:02 UTC -* Number of recursive dependencies: 210 - -Run `revdepcheck::cloud_details(, "OlinkAnalyze")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/OlinkAnalyze/new/OlinkAnalyze.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK -... ---- finished re-building ‘plate_randomizer.Rmd’ - -SUMMARY: processing the following file failed: - ‘Vignett.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 ERROR, 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/OlinkAnalyze/old/OlinkAnalyze.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK -... ---- finished re-building ‘plate_randomizer.Rmd’ - -SUMMARY: processing the following file failed: - ‘Vignett.Rmd’ - -Error: Vignette re-building failed. -Execution halted - -* DONE -Status: 1 ERROR, 2 NOTEs - - - - - -``` -# optweight - -
- -* Version: 0.2.5 -* GitHub: NA -* Source code: https://github.com/cran/optweight -* Date/Publication: 2019-09-16 15:40:02 UTC -* Number of recursive dependencies: 55 - -Run `revdepcheck::cloud_details(, "optweight")` for more info - -
- -## In both - -* checking whether package ‘optweight’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/optweight/new/optweight.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘optweight’ ... -** package ‘optweight’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘optweight’ -* removing ‘/tmp/workdir/optweight/new/optweight.Rcheck/optweight’ - - -``` -### CRAN - -``` -* installing *source* package ‘optweight’ ... -** package ‘optweight’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘optweight’ -* removing ‘/tmp/workdir/optweight/old/optweight.Rcheck/optweight’ - - -``` -# OVtool - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/OVtool -* Date/Publication: 2021-11-02 08:10:07 UTC -* Number of recursive dependencies: 156 - -Run `revdepcheck::cloud_details(, "OVtool")` for more info - -
- -## In both - -* checking whether package ‘OVtool’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘OVtool’ ... -** package ‘OVtool’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘OVtool’ -* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’ - - -``` -### CRAN - -``` -* installing *source* package ‘OVtool’ ... -** package ‘OVtool’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘OVtool’ -* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’ - - -``` -# pammtools - -
- -* Version: 0.5.93 -* GitHub: https://github.com/adibender/pammtools -* Source code: https://github.com/cran/pammtools -* Date/Publication: 2024-02-25 10:10:02 UTC -* Number of recursive dependencies: 124 - -Run `revdepcheck::cloud_details(, "pammtools")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/pammtools/new/pammtools.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘pammtools/DESCRIPTION’ ... OK -... -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking R/sysdata.rda ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/pammtools/old/pammtools.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘pammtools/DESCRIPTION’ ... OK -... -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking R/sysdata.rda ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: OK - - - - - -``` -# paths - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/paths -* Date/Publication: 2021-06-18 08:40:02 UTC -* Number of recursive dependencies: 102 - -Run `revdepcheck::cloud_details(, "paths")` for more info - -
- -## In both - -* checking whether package ‘paths’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/paths/new/paths.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘paths’ ... -** package ‘paths’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘paths’ -* removing ‘/tmp/workdir/paths/new/paths.Rcheck/paths’ - - -``` -### CRAN - -``` -* installing *source* package ‘paths’ ... -** package ‘paths’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘paths’ -* removing ‘/tmp/workdir/paths/old/paths.Rcheck/paths’ - - -``` -# PathwaySpace - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/PathwaySpace -* Number of recursive dependencies: 69 - -Run `revdepcheck::cloud_details(, "PathwaySpace")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# pcvr - -
- -* Version: 1.1.1.0 -* GitHub: https://github.com/danforthcenter/pcvr -* Source code: https://github.com/cran/pcvr -* Date/Publication: 2024-11-06 20:50:02 UTC -* Number of recursive dependencies: 192 - -Run `revdepcheck::cloud_details(, "pcvr")` for more info - -
- -## In both - -* checking whether package ‘pcvr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pcvr’ ... -** package ‘pcvr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pcvr’ -* removing ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/pcvr’ - - -``` -### CRAN - -``` -* installing *source* package ‘pcvr’ ... -** package ‘pcvr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pcvr’ -* removing ‘/tmp/workdir/pcvr/old/pcvr.Rcheck/pcvr’ - - -``` -# PLMIX - -
- -* Version: 2.1.1 -* GitHub: NA -* Source code: https://github.com/cran/PLMIX -* Date/Publication: 2019-09-04 11:50:02 UTC -* Number of recursive dependencies: 128 - -Run `revdepcheck::cloud_details(, "PLMIX")` for more info - -
- -## In both - -* checking whether package ‘PLMIX’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/PLMIX/new/PLMIX.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘PLMIX’ ... -** package ‘PLMIX’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompProbZpartial.cpp -o CompProbZpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateP.cpp -o CompRateP.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateYpartial.cpp -o CompRateYpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Estep.cpp -o Estep.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c PLMIXsim.cpp -o PLMIXsim.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘PLMIX’ -* removing ‘/tmp/workdir/PLMIX/new/PLMIX.Rcheck/PLMIX’ - - -``` -### CRAN - -``` -* installing *source* package ‘PLMIX’ ... -** package ‘PLMIX’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompProbZpartial.cpp -o CompProbZpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateP.cpp -o CompRateP.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateYpartial.cpp -o CompRateYpartial.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Estep.cpp -o Estep.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c PLMIXsim.cpp -o PLMIXsim.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘PLMIX’ -* removing ‘/tmp/workdir/PLMIX/old/PLMIX.Rcheck/PLMIX’ - - -``` -# popstudy - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/popstudy -* Date/Publication: 2023-10-17 23:50:02 UTC -* Number of recursive dependencies: 242 - -Run `revdepcheck::cloud_details(, "popstudy")` for more info - -
- -## In both - -* checking whether package ‘popstudy’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘popstudy’ ... -** package ‘popstudy’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘popstudy’ -* removing ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/popstudy’ - - -``` -### CRAN - -``` -* installing *source* package ‘popstudy’ ... -** package ‘popstudy’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘popstudy’ -* removing ‘/tmp/workdir/popstudy/old/popstudy.Rcheck/popstudy’ - - -``` -# pould - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/pould -* Date/Publication: 2020-10-16 13:50:03 UTC -* Number of recursive dependencies: 104 - -Run `revdepcheck::cloud_details(, "pould")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/pould/new/pould.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘pould/DESCRIPTION’ ... OK -... -* this is package ‘pould’ version ‘1.0.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘haplo.stats’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/pould/old/pould.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘pould/DESCRIPTION’ ... OK -... -* this is package ‘pould’ version ‘1.0.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘haplo.stats’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# PoweREST - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/PoweREST -* Date/Publication: 2024-09-09 09:30:02 UTC -* Number of recursive dependencies: 171 - -Run `revdepcheck::cloud_details(, "PoweREST")` for more info - -
- -## In both - -* checking whether package ‘PoweREST’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/PoweREST/new/PoweREST.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘PoweREST’ ... -** package ‘PoweREST’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘PoweREST’ -* removing ‘/tmp/workdir/PoweREST/new/PoweREST.Rcheck/PoweREST’ - - -``` -### CRAN - -``` -* installing *source* package ‘PoweREST’ ... -** package ‘PoweREST’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘PoweREST’ -* removing ‘/tmp/workdir/PoweREST/old/PoweREST.Rcheck/PoweREST’ - - -``` -# powerly - -
- -* Version: 1.8.6 -* GitHub: https://github.com/mihaiconstantin/powerly -* Source code: https://github.com/cran/powerly -* Date/Publication: 2022-09-09 14:10:01 UTC -* Number of recursive dependencies: 169 - -Run `revdepcheck::cloud_details(, "powerly")` for more info - -
- -## In both - -* checking whether package ‘powerly’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/powerly/new/powerly.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘powerly’ ... -** package ‘powerly’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘powerly’ -* removing ‘/tmp/workdir/powerly/new/powerly.Rcheck/powerly’ - - -``` -### CRAN - -``` -* installing *source* package ‘powerly’ ... -** package ‘powerly’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘powerly’ -* removing ‘/tmp/workdir/powerly/old/powerly.Rcheck/powerly’ - - -``` -# pre - -
- -* Version: 1.0.7 -* GitHub: https://github.com/marjoleinF/pre -* Source code: https://github.com/cran/pre -* Date/Publication: 2024-01-12 19:30:02 UTC -* Number of recursive dependencies: 153 - -Run `revdepcheck::cloud_details(, "pre")` for more info - -
- -## In both - -* checking whether package ‘pre’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pre/new/pre.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pre’ ... -** package ‘pre’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pre’ -* removing ‘/tmp/workdir/pre/new/pre.Rcheck/pre’ - - -``` -### CRAN - -``` -* installing *source* package ‘pre’ ... -** package ‘pre’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pre’ -* removing ‘/tmp/workdir/pre/old/pre.Rcheck/pre’ - - -``` -# ProFAST - -
- -* Version: 1.4 -* GitHub: https://github.com/feiyoung/ProFAST -* Source code: https://github.com/cran/ProFAST -* Date/Publication: 2024-03-18 08:10:06 UTC -* Number of recursive dependencies: 248 - -Run `revdepcheck::cloud_details(, "ProFAST")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/ProFAST/new/ProFAST.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ProFAST/DESCRIPTION’ ... OK -... -* this is package ‘ProFAST’ version ‘1.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'DR.SC', 'PRECAST' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/ProFAST/old/ProFAST.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ProFAST/DESCRIPTION’ ... OK -... -* this is package ‘ProFAST’ version ‘1.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'DR.SC', 'PRECAST' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# psbcSpeedUp - -
- -* Version: 2.0.7 -* GitHub: https://github.com/ocbe-uio/psbcSpeedUp -* Source code: https://github.com/cran/psbcSpeedUp -* Date/Publication: 2024-07-01 09:00:02 UTC -* Number of recursive dependencies: 119 - -Run `revdepcheck::cloud_details(, "psbcSpeedUp")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/psbcSpeedUp/new/psbcSpeedUp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘psbcSpeedUp/DESCRIPTION’ ... OK -... -* this is package ‘psbcSpeedUp’ version ‘2.0.7’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/psbcSpeedUp/old/psbcSpeedUp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘psbcSpeedUp/DESCRIPTION’ ... OK -... -* this is package ‘psbcSpeedUp’ version ‘2.0.7’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘riskRegression’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# pscore - -
- -* Version: 0.4.0 -* GitHub: https://github.com/JWiley/score-project -* Source code: https://github.com/cran/pscore -* Date/Publication: 2022-05-13 22:30:02 UTC -* Number of recursive dependencies: 171 - -Run `revdepcheck::cloud_details(, "pscore")` for more info - -
- -## In both - -* checking whether package ‘pscore’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pscore’ ... -** package ‘pscore’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pscore’ -* removing ‘/tmp/workdir/pscore/new/pscore.Rcheck/pscore’ - - -``` -### CRAN - -``` -* installing *source* package ‘pscore’ ... -** package ‘pscore’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pscore’ -* removing ‘/tmp/workdir/pscore/old/pscore.Rcheck/pscore’ - - -``` -# pubh - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/pubh -* Number of recursive dependencies: 161 - -Run `revdepcheck::cloud_details(, "pubh")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# qPCRtools - -
- -* Version: 1.0.1 -* GitHub: https://github.com/lixiang117423/qPCRtools -* Source code: https://github.com/cran/qPCRtools -* Date/Publication: 2023-11-02 13:10:05 UTC -* Number of recursive dependencies: 110 - -Run `revdepcheck::cloud_details(, "qPCRtools")` for more info - -
- -## In both - -* checking whether package ‘qPCRtools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/qPCRtools/new/qPCRtools.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘qPCRtools’ ... -** package ‘qPCRtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qPCRtools’ -* removing ‘/tmp/workdir/qPCRtools/new/qPCRtools.Rcheck/qPCRtools’ - - -``` -### CRAN - -``` -* installing *source* package ‘qPCRtools’ ... -** package ‘qPCRtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qPCRtools’ -* removing ‘/tmp/workdir/qPCRtools/old/qPCRtools.Rcheck/qPCRtools’ - - -``` -# qris - -
- -* Version: 1.1.1 -* GitHub: https://github.com/Kyuhyun07/qris -* Source code: https://github.com/cran/qris -* Date/Publication: 2024-03-05 14:40:03 UTC -* Number of recursive dependencies: 54 - -Run `revdepcheck::cloud_details(, "qris")` for more info - -
- -## In both - -* checking whether package ‘qris’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/qris/new/qris.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘qris’ ... -** package ‘qris’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o -... -installing to /tmp/workdir/qris/new/qris.Rcheck/00LOCK-qris/00new/qris/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qris’ -* removing ‘/tmp/workdir/qris/new/qris.Rcheck/qris’ - - -``` -### CRAN - -``` -* installing *source* package ‘qris’ ... -** package ‘qris’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o -... -installing to /tmp/workdir/qris/old/qris.Rcheck/00LOCK-qris/00new/qris/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qris’ -* removing ‘/tmp/workdir/qris/old/qris.Rcheck/qris’ - - -``` -# qte - -
- -* Version: 1.3.1 -* GitHub: NA -* Source code: https://github.com/cran/qte -* Date/Publication: 2022-09-01 14:30:02 UTC -* Number of recursive dependencies: 123 - -Run `revdepcheck::cloud_details(, "qte")` for more info - -
- -## In both - -* checking whether package ‘qte’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/qte/new/qte.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘qte’ ... -** package ‘qte’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qte’ -* removing ‘/tmp/workdir/qte/new/qte.Rcheck/qte’ - - -``` -### CRAN - -``` -* installing *source* package ‘qte’ ... -** package ‘qte’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘qte’ -* removing ‘/tmp/workdir/qte/old/qte.Rcheck/qte’ - - -``` -# quantilogram - -
- -* Version: 3.1.1 -* GitHub: NA -* Source code: https://github.com/cran/quantilogram -* Date/Publication: 2024-08-27 12:40:02 UTC -* Number of recursive dependencies: 58 - -Run `revdepcheck::cloud_details(, "quantilogram")` for more info - -
- -## In both - -* checking whether package ‘quantilogram’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/quantilogram/new/quantilogram.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘quantilogram’ ... -** package ‘quantilogram’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quantilogram’ -* removing ‘/tmp/workdir/quantilogram/new/quantilogram.Rcheck/quantilogram’ - - -``` -### CRAN - -``` -* installing *source* package ‘quantilogram’ ... -** package ‘quantilogram’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quantilogram’ -* removing ‘/tmp/workdir/quantilogram/old/quantilogram.Rcheck/quantilogram’ - - -``` -# quid - -
- -* Version: 0.0.1 -* GitHub: NA -* Source code: https://github.com/cran/quid -* Date/Publication: 2021-12-09 09:00:02 UTC -* Number of recursive dependencies: 94 - -Run `revdepcheck::cloud_details(, "quid")` for more info - -
- -## In both - -* checking whether package ‘quid’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/quid/new/quid.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘quid’ ... -** package ‘quid’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quid’ -* removing ‘/tmp/workdir/quid/new/quid.Rcheck/quid’ - - -``` -### CRAN - -``` -* installing *source* package ‘quid’ ... -** package ‘quid’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘quid’ -* removing ‘/tmp/workdir/quid/old/quid.Rcheck/quid’ - - -``` -# RcmdrPlugin.RiskDemo - -
- -* Version: 3.2 -* GitHub: NA -* Source code: https://github.com/cran/RcmdrPlugin.RiskDemo -* Date/Publication: 2024-02-06 09:20:02 UTC -* Number of recursive dependencies: 201 - -Run `revdepcheck::cloud_details(, "RcmdrPlugin.RiskDemo")` for more info - -
- -## In both - -* checking whether package ‘RcmdrPlugin.RiskDemo’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/RcmdrPlugin.RiskDemo/new/RcmdrPlugin.RiskDemo.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘RcmdrPlugin.RiskDemo’ ... -** package ‘RcmdrPlugin.RiskDemo’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RcmdrPlugin.RiskDemo’ -* removing ‘/tmp/workdir/RcmdrPlugin.RiskDemo/new/RcmdrPlugin.RiskDemo.Rcheck/RcmdrPlugin.RiskDemo’ - - -``` -### CRAN - -``` -* installing *source* package ‘RcmdrPlugin.RiskDemo’ ... -** package ‘RcmdrPlugin.RiskDemo’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RcmdrPlugin.RiskDemo’ -* removing ‘/tmp/workdir/RcmdrPlugin.RiskDemo/old/RcmdrPlugin.RiskDemo.Rcheck/RcmdrPlugin.RiskDemo’ - - -``` -# rddtools - -
- -* Version: 1.6.0 -* GitHub: https://github.com/bquast/rddtools -* Source code: https://github.com/cran/rddtools -* Date/Publication: 2022-01-10 12:42:49 UTC -* Number of recursive dependencies: 108 - -Run `revdepcheck::cloud_details(, "rddtools")` for more info - -
- -## In both - -* checking whether package ‘rddtools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rddtools’ ... -** package ‘rddtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘rddtools’ -* removing ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/rddtools’ - - -``` -### CRAN - -``` -* installing *source* package ‘rddtools’ ... -** package ‘rddtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘rddtools’ -* removing ‘/tmp/workdir/rddtools/old/rddtools.Rcheck/rddtools’ - - -``` -# relsurv - -
- -* Version: 2.3-1 -* GitHub: NA -* Source code: https://github.com/cran/relsurv -* Date/Publication: 2025-01-20 15:40:01 UTC -* Number of recursive dependencies: 112 - -Run `revdepcheck::cloud_details(, "relsurv")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/relsurv/new/relsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘relsurv/DESCRIPTION’ ... OK -... -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking line endings in Makefiles ... OK -* checking compilation flags in Makevars ... OK -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/relsurv/old/relsurv.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘relsurv/DESCRIPTION’ ... OK -... -* checking line endings in C/C++/Fortran sources/headers ... OK -* checking line endings in Makefiles ... OK -* checking compilation flags in Makevars ... OK -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* DONE -Status: OK - - - - - -``` -# ReporterScore - -
- -* Version: 0.1.9 -* GitHub: https://github.com/Asa12138/ReporterScore -* Source code: https://github.com/cran/ReporterScore -* Date/Publication: 2024-11-28 14:10:06 UTC -* Number of recursive dependencies: 250 - -Run `revdepcheck::cloud_details(, "ReporterScore")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/ReporterScore/new/ReporterScore.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ReporterScore/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘ReporterScore.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/ReporterScore/old/ReporterScore.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ReporterScore/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘ReporterScore.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# RGraphSpace - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/RGraphSpace -* Number of recursive dependencies: 64 - -Run `revdepcheck::cloud_details(, "RGraphSpace")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# riskRegression - -
- -* Version: 2023.12.21 -* GitHub: https://github.com/tagteam/riskRegression -* Source code: https://github.com/cran/riskRegression -* Date/Publication: 2023-12-19 17:00:02 UTC -* Number of recursive dependencies: 185 - -Run `revdepcheck::cloud_details(, "riskRegression")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/riskRegression/new/riskRegression.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘riskRegression/DESCRIPTION’ ... OK -... -* this is package ‘riskRegression’ version ‘2023.12.21’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/riskRegression/old/riskRegression.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘riskRegression/DESCRIPTION’ ... OK -... -* this is package ‘riskRegression’ version ‘2023.12.21’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# rmlnomogram - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/rmlnomogram -* Number of recursive dependencies: 181 - -Run `revdepcheck::cloud_details(, "rmlnomogram")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# rms - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/rms -* Number of recursive dependencies: 148 - -Run `revdepcheck::cloud_details(, "rms")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# robber - -
- -* Version: 0.2.4 -* GitHub: https://github.com/Chabert-Liddell/robber -* Source code: https://github.com/cran/robber -* Date/Publication: 2024-02-07 13:50:02 UTC -* Number of recursive dependencies: 143 - -Run `revdepcheck::cloud_details(, "robber")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/robber/new/robber.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘robber/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘spelling.R’ - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘topological-analysis.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/robber/old/robber.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘robber/DESCRIPTION’ ... OK -... -* checking tests ... OK - Running ‘spelling.R’ - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... OK - ‘topological-analysis.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: OK - - - - - -``` -# robmed - -
- -* Version: 1.2.0 -* GitHub: https://github.com/aalfons/robmed -* Source code: https://github.com/cran/robmed -* Date/Publication: 2024-12-10 00:00:02 UTC -* Number of recursive dependencies: 59 - -Run `revdepcheck::cloud_details(, "robmed")` for more info - -
- -## In both - -* checking whether package ‘robmed’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/robmed/new/robmed.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘robmed’ ... -** package ‘robmed’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘robmed’ -* removing ‘/tmp/workdir/robmed/new/robmed.Rcheck/robmed’ - - -``` -### CRAN - -``` -* installing *source* package ‘robmed’ ... -** package ‘robmed’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘robmed’ -* removing ‘/tmp/workdir/robmed/old/robmed.Rcheck/robmed’ - - -``` -# robmedExtra - -
- -* Version: 0.1.1 -* GitHub: https://github.com/aalfons/robmedExtra -* Source code: https://github.com/cran/robmedExtra -* Date/Publication: 2024-11-03 12:10:01 UTC -* Number of recursive dependencies: 91 - -Run `revdepcheck::cloud_details(, "robmedExtra")` for more info - -
- -## In both - -* checking whether package ‘robmedExtra’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/robmedExtra/new/robmedExtra.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘robmedExtra’ ... -** package ‘robmedExtra’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘robmed’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘robmedExtra’ -* removing ‘/tmp/workdir/robmedExtra/new/robmedExtra.Rcheck/robmedExtra’ - - -``` -### CRAN - -``` -* installing *source* package ‘robmedExtra’ ... -** package ‘robmedExtra’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘robmed’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘robmedExtra’ -* removing ‘/tmp/workdir/robmedExtra/old/robmedExtra.Rcheck/robmedExtra’ - - -``` -# RPPanalyzer - -
- -* Version: 1.4.9 -* GitHub: NA -* Source code: https://github.com/cran/RPPanalyzer -* Date/Publication: 2024-01-25 11:00:02 UTC -* Number of recursive dependencies: 82 - -Run `revdepcheck::cloud_details(, "RPPanalyzer")` for more info - -
- -## In both - -* checking whether package ‘RPPanalyzer’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/RPPanalyzer/new/RPPanalyzer.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘RPPanalyzer’ ... -** package ‘RPPanalyzer’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RPPanalyzer’ -* removing ‘/tmp/workdir/RPPanalyzer/new/RPPanalyzer.Rcheck/RPPanalyzer’ - - -``` -### CRAN - -``` -* installing *source* package ‘RPPanalyzer’ ... -** package ‘RPPanalyzer’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RPPanalyzer’ -* removing ‘/tmp/workdir/RPPanalyzer/old/RPPanalyzer.Rcheck/RPPanalyzer’ - - -``` -# RQdeltaCT - -
- -* Version: 1.3.0 -* GitHub: NA -* Source code: https://github.com/cran/RQdeltaCT -* Date/Publication: 2024-04-17 15:50:02 UTC -* Number of recursive dependencies: 163 - -Run `revdepcheck::cloud_details(, "RQdeltaCT")` for more info - -
- -## In both - -* checking whether package ‘RQdeltaCT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘RQdeltaCT’ ... -** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RQdeltaCT’ -* removing ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/RQdeltaCT’ - - -``` -### CRAN - -``` -* installing *source* package ‘RQdeltaCT’ ... -** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RQdeltaCT’ -* removing ‘/tmp/workdir/RQdeltaCT/old/RQdeltaCT.Rcheck/RQdeltaCT’ - - -``` -# RRPP - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/RRPP -* Number of recursive dependencies: 67 - -Run `revdepcheck::cloud_details(, "RRPP")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# rstanarm - -
- -* Version: 2.32.1 -* GitHub: https://github.com/stan-dev/rstanarm -* Source code: https://github.com/cran/rstanarm -* Date/Publication: 2024-01-18 23:00:03 UTC -* Number of recursive dependencies: 140 - -Run `revdepcheck::cloud_details(, "rstanarm")` for more info - -
- -## In both - -* checking whether package ‘rstanarm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan -Wrote C++ file "stan_files/bernoulli.cc" - - -... -/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1 -rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ - - -``` -### CRAN - -``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan -Wrote C++ file "stan_files/bernoulli.cc" - - -... -/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here -/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1 -rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ - - -``` -# rTwig - -
- -* Version: 1.3.0 -* GitHub: https://github.com/aidanmorales/rTwig -* Source code: https://github.com/cran/rTwig -* Date/Publication: 2024-11-21 21:30:02 UTC -* Number of recursive dependencies: 141 - -Run `revdepcheck::cloud_details(, "rTwig")` for more info - -
- -## In both - -* checking whether package ‘rTwig’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rTwig/new/rTwig.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rTwig’ ... -** package ‘rTwig’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c box_counting.cpp -o box_counting.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cluster_cloud.cpp -o cluster_cloud.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c colors.cpp -o colors.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c convex_hull.cpp -o convex_hull.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘rTwig’ -* removing ‘/tmp/workdir/rTwig/new/rTwig.Rcheck/rTwig’ - - -``` -### CRAN - -``` -* installing *source* package ‘rTwig’ ... -** package ‘rTwig’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c box_counting.cpp -o box_counting.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cluster_cloud.cpp -o cluster_cloud.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c colors.cpp -o colors.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I../inst/include -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c convex_hull.cpp -o convex_hull.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘rTwig’ -* removing ‘/tmp/workdir/rTwig/old/rTwig.Rcheck/rTwig’ - - -``` -# RVA - -
- -* Version: 0.0.5 -* GitHub: https://github.com/THERMOSTATS/RVA -* Source code: https://github.com/cran/RVA -* Date/Publication: 2021-11-01 21:40:02 UTC -* Number of recursive dependencies: 210 - -Run `revdepcheck::cloud_details(, "RVA")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘RVA/DESCRIPTION’ ... OK -... -* this is package ‘RVA’ version ‘0.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘RVA/DESCRIPTION’ ... OK -... -* this is package ‘RVA’ version ‘0.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# S4DM - -
- -* Version: 0.0.1 -* GitHub: NA -* Source code: https://github.com/cran/S4DM -* Date/Publication: 2025-01-10 21:00:02 UTC -* Number of recursive dependencies: 138 - -Run `revdepcheck::cloud_details(, "S4DM")` for more info - -
- -## In both - -* checking whether package ‘S4DM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/S4DM/new/S4DM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘S4DM’ ... -** package ‘S4DM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘S4DM’ -* removing ‘/tmp/workdir/S4DM/new/S4DM.Rcheck/S4DM’ - - -``` -### CRAN - -``` -* installing *source* package ‘S4DM’ ... -** package ‘S4DM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘S4DM’ -* removing ‘/tmp/workdir/S4DM/old/S4DM.Rcheck/S4DM’ - - -``` -# scCustomize - -
- -* Version: 3.0.1 -* GitHub: https://github.com/samuel-marsh/scCustomize -* Source code: https://github.com/cran/scCustomize -* Date/Publication: 2024-12-18 18:40:02 UTC -* Number of recursive dependencies: 272 - -Run `revdepcheck::cloud_details(, "scCustomize")` for more info - -
- -## In both - -* checking whether package ‘scCustomize’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘Nebulosa’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scCustomize’ ... -** package ‘scCustomize’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘scCustomize’ -* removing ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/scCustomize’ - - -``` -### CRAN - -``` -* installing *source* package ‘scCustomize’ ... -** package ‘scCustomize’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘scCustomize’ -* removing ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/scCustomize’ - - -``` -# SCdeconR - -
- -* Version: 1.0.0 -* GitHub: https://github.com/Liuy12/SCdeconR -* Source code: https://github.com/cran/SCdeconR -* Date/Publication: 2024-03-22 19:20:02 UTC -* Number of recursive dependencies: 237 - -Run `revdepcheck::cloud_details(, "SCdeconR")` for more info - -
- -## In both - -* checking whether package ‘SCdeconR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SCdeconR/new/SCdeconR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SCdeconR’ ... -** package ‘SCdeconR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘SCdeconR’ -* removing ‘/tmp/workdir/SCdeconR/new/SCdeconR.Rcheck/SCdeconR’ - - -``` -### CRAN - -``` -* installing *source* package ‘SCdeconR’ ... -** package ‘SCdeconR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘SCdeconR’ -* removing ‘/tmp/workdir/SCdeconR/old/SCdeconR.Rcheck/SCdeconR’ - - -``` -# scGate - -
- -* Version: 1.6.2 -* GitHub: https://github.com/carmonalab/scGate -* Source code: https://github.com/cran/scGate -* Date/Publication: 2024-04-23 08:50:02 UTC -* Number of recursive dependencies: 180 - -Run `revdepcheck::cloud_details(, "scGate")` for more info - -
- -## In both - -* checking whether package ‘scGate’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scGate/new/scGate.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scGate’ ... -** package ‘scGate’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘query.seurat’ -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘query.seurat’ -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scGate’ -* removing ‘/tmp/workdir/scGate/new/scGate.Rcheck/scGate’ - - -``` -### CRAN - -``` -* installing *source* package ‘scGate’ ... -** package ‘scGate’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘query.seurat’ -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘query.seurat’ -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scGate’ -* removing ‘/tmp/workdir/scGate/old/scGate.Rcheck/scGate’ - - -``` -# SCIntRuler - -
- -* Version: 0.99.6 -* GitHub: https://github.com/yuelyu21/SCIntRuler -* Source code: https://github.com/cran/SCIntRuler -* Date/Publication: 2024-07-12 15:20:08 UTC -* Number of recursive dependencies: 202 - -Run `revdepcheck::cloud_details(, "SCIntRuler")` for more info - -
- -## In both - -* checking whether package ‘SCIntRuler’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SCIntRuler’ ... -** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SCIntRuler’ -* removing ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/SCIntRuler’ - - -``` -### CRAN - -``` -* installing *source* package ‘SCIntRuler’ ... -** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs -** R -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SCIntRuler’ -* removing ‘/tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/SCIntRuler’ - - -``` -# scMappR - -
- -* Version: 1.0.11 -* GitHub: NA -* Source code: https://github.com/cran/scMappR -* Date/Publication: 2023-06-30 08:40:08 UTC -* Number of recursive dependencies: 241 - -Run `revdepcheck::cloud_details(, "scMappR")` for more info - -
- -## In both - -* checking whether package ‘scMappR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scMappR’ ... -** package ‘scMappR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scMappR’ -* removing ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/scMappR’ - - -``` -### CRAN - -``` -* installing *source* package ‘scMappR’ ... -** package ‘scMappR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scMappR’ -* removing ‘/tmp/workdir/scMappR/old/scMappR.Rcheck/scMappR’ - - -``` -# scpi - -
- -* Version: 2.2.6 -* GitHub: NA -* Source code: https://github.com/cran/scpi -* Date/Publication: 2024-11-11 23:40:02 UTC -* Number of recursive dependencies: 96 - -Run `revdepcheck::cloud_details(, "scpi")` for more info - -
- -## In both - -* checking whether package ‘scpi’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scpi/new/scpi.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scpi’ ... -** package ‘scpi’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated -Warning in .recacheSubclasses(def@className, def, env) : -... -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scpi’ -* removing ‘/tmp/workdir/scpi/new/scpi.Rcheck/scpi’ - - -``` -### CRAN - -``` -* installing *source* package ‘scpi’ ... -** package ‘scpi’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstVal"; definition not updated -Warning in .recacheSubclasses(def@className, def, env) : -... -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstValORExpr"; definition not updated -Warning in .recacheSubclasses(def@className, def, env) : - undefined subclass "pcorMatrix" of class "ConstValORNULL"; definition not updated -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scpi’ -* removing ‘/tmp/workdir/scpi/old/scpi.Rcheck/scpi’ - - -``` -# SCpubr - -
- -* Version: 2.0.2 -* GitHub: https://github.com/enblacar/SCpubr -* Source code: https://github.com/cran/SCpubr -* Date/Publication: 2023-10-11 09:50:02 UTC -* Number of recursive dependencies: 301 - -Run `revdepcheck::cloud_details(, "SCpubr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCpubr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘reference_manual.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCpubr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘reference_manual.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -# scRNAstat - -
- -* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/scRNAstat -* Date/Publication: 2021-09-22 08:10:02 UTC -* Number of recursive dependencies: 156 - -Run `revdepcheck::cloud_details(, "scRNAstat")` for more info - -
- -## In both - -* checking whether package ‘scRNAstat’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scRNAstat’ ... -** package ‘scRNAstat’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -Warning: namespace ‘SeuratObject’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -... -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -Warning: namespace ‘DBI’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scRNAstat’ -* removing ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/scRNAstat’ - - -``` -### CRAN - -``` -* installing *source* package ‘scRNAstat’ ... -** package ‘scRNAstat’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -Warning: namespace ‘SeuratObject’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -... -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -Warning: namespace ‘DBI’ is not available and has been replaced -by .GlobalEnv when processing object ‘AJ064_small_last_sce’ -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘scRNAstat’ -* removing ‘/tmp/workdir/scRNAstat/old/scRNAstat.Rcheck/scRNAstat’ - - -``` -# sectorgap - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/sectorgap -* Date/Publication: 2024-01-22 17:40:02 UTC -* Number of recursive dependencies: 46 - -Run `revdepcheck::cloud_details(, "sectorgap")` for more info - -
- -## In both - -* checking whether package ‘sectorgap’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/sectorgap/new/sectorgap.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘sectorgap’ ... -** package ‘sectorgap’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sectorgap’ -* removing ‘/tmp/workdir/sectorgap/new/sectorgap.Rcheck/sectorgap’ - - -``` -### CRAN - -``` -* installing *source* package ‘sectorgap’ ... -** package ‘sectorgap’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sectorgap’ -* removing ‘/tmp/workdir/sectorgap/old/sectorgap.Rcheck/sectorgap’ - - -``` -# SEERaBomb - -
- -* Version: 2019.2 -* GitHub: NA -* Source code: https://github.com/cran/SEERaBomb -* Date/Publication: 2019-12-12 18:50:03 UTC -* Number of recursive dependencies: 185 - -Run `revdepcheck::cloud_details(, "SEERaBomb")` for more info - -
- -## In both - -* checking whether package ‘SEERaBomb’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SEERaBomb’ ... -** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c SEERaBomb_init.c -o SEERaBomb_init.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fillPYM.cpp -o fillPYM.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR -... -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘SEERaBomb’ -* removing ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/SEERaBomb’ - - -``` -### CRAN - -``` -* installing *source* package ‘SEERaBomb’ ... -** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c SEERaBomb_init.c -o SEERaBomb_init.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fillPYM.cpp -o fillPYM.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR -... -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘SEERaBomb’ -* removing ‘/tmp/workdir/SEERaBomb/old/SEERaBomb.Rcheck/SEERaBomb’ - - -``` -# semicmprskcoxmsm - -
- -* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/semicmprskcoxmsm -* Date/Publication: 2022-04-29 23:40:02 UTC -* Number of recursive dependencies: 70 - -Run `revdepcheck::cloud_details(, "semicmprskcoxmsm")` for more info - -
- -## In both - -* checking whether package ‘semicmprskcoxmsm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘semicmprskcoxmsm’ ... -** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘semicmprskcoxmsm’ -* removing ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’ - - -``` -### CRAN - -``` -* installing *source* package ‘semicmprskcoxmsm’ ... -** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘semicmprskcoxmsm’ -* removing ‘/tmp/workdir/semicmprskcoxmsm/old/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’ - - -``` -# SensMap - -
- -* Version: 0.7 -* GitHub: https://github.com/IbtihelRebhi/SensMap -* Source code: https://github.com/cran/SensMap -* Date/Publication: 2022-07-04 19:00:02 UTC -* Number of recursive dependencies: 148 - -Run `revdepcheck::cloud_details(, "SensMap")` for more info - -
- -## In both - -* checking whether package ‘SensMap’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SensMap’ ... -** package ‘SensMap’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SensMap’ -* removing ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/SensMap’ - - -``` -### CRAN - -``` -* installing *source* package ‘SensMap’ ... -** package ‘SensMap’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SensMap’ -* removing ‘/tmp/workdir/SensMap/old/SensMap.Rcheck/SensMap’ - - -``` -# Seurat - -
- -* Version: 5.2.1 -* GitHub: https://github.com/satijalab/seurat -* Source code: https://github.com/cran/Seurat -* Date/Publication: 2025-01-24 06:50:06 UTC -* Number of recursive dependencies: 281 - -Run `revdepcheck::cloud_details(, "Seurat")` for more info - -
- -## In both - -* checking whether package ‘Seurat’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Seurat’ ... -** package ‘Seurat’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘Seurat’ -* removing ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/Seurat’ - - -``` -### CRAN - -``` -* installing *source* package ‘Seurat’ ... -** package ‘Seurat’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o -In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘Seurat’ -* removing ‘/tmp/workdir/Seurat/old/Seurat.Rcheck/Seurat’ - - -``` -# shinyTempSignal - -
- -* Version: 0.0.8 -* GitHub: https://github.com/YuLab-SMU/shinyTempSignal -* Source code: https://github.com/cran/shinyTempSignal -* Date/Publication: 2024-03-06 08:00:02 UTC -* Number of recursive dependencies: 134 - -Run `revdepcheck::cloud_details(, "shinyTempSignal")` for more info - -
- -## In both - -* checking whether package ‘shinyTempSignal’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘shinyTempSignal’ ... -** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘shinyTempSignal’ -* removing ‘/tmp/workdir/shinyTempSignal/new/shinyTempSignal.Rcheck/shinyTempSignal’ - - -``` -### CRAN - -``` -* installing *source* package ‘shinyTempSignal’ ... -** package ‘shinyTempSignal’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘shinyTempSignal’ -* removing ‘/tmp/workdir/shinyTempSignal/old/shinyTempSignal.Rcheck/shinyTempSignal’ - - -``` -# sievePH - -
- -* Version: 1.1 -* GitHub: https://github.com/mjuraska/sievePH -* Source code: https://github.com/cran/sievePH -* Date/Publication: 2024-05-17 23:40:02 UTC -* Number of recursive dependencies: 76 - -Run `revdepcheck::cloud_details(, "sievePH")` for more info - -
- -## In both - -* checking whether package ‘sievePH’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/sievePH/new/sievePH.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘sievePH’ ... -** package ‘sievePH’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c kernel_sievePH_utils.cpp -o kernel_sievePH_utils.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sievePH.so RcppExports.o kernel_sievePH_utils.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sievePH/new/sievePH.Rcheck/00LOCK-sievePH/00new/sievePH/libs -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sievePH’ -* removing ‘/tmp/workdir/sievePH/new/sievePH.Rcheck/sievePH’ - - -``` -### CRAN - -``` -* installing *source* package ‘sievePH’ ... -** package ‘sievePH’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c kernel_sievePH_utils.cpp -o kernel_sievePH_utils.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sievePH.so RcppExports.o kernel_sievePH_utils.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sievePH/old/sievePH.Rcheck/00LOCK-sievePH/00new/sievePH/libs -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sievePH’ -* removing ‘/tmp/workdir/sievePH/old/sievePH.Rcheck/sievePH’ - - -``` -# SiFINeT - -
- -* Version: 1.13 -* GitHub: NA -* Source code: https://github.com/cran/SiFINeT -* Date/Publication: 2025-01-16 15:10:05 UTC -* Number of recursive dependencies: 75 - -Run `revdepcheck::cloud_details(, "SiFINeT")` for more info - -
- -## In both - -* checking whether package ‘SiFINeT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SiFINeT/new/SiFINeT.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SiFINeT’ ... -** package ‘SiFINeT’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c EstNull.cpp -o EstNull.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_coexp.cpp -o cal_coexp.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_coexp_sp.cpp -o cal_coexp_sp.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_conn.cpp -o cal_conn.o -... -installing to /tmp/workdir/SiFINeT/new/SiFINeT.Rcheck/00LOCK-SiFINeT/00new/SiFINeT/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SiFINeT’ -* removing ‘/tmp/workdir/SiFINeT/new/SiFINeT.Rcheck/SiFINeT’ - - -``` -### CRAN - -``` -* installing *source* package ‘SiFINeT’ ... -** package ‘SiFINeT’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c EstNull.cpp -o EstNull.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_coexp.cpp -o cal_coexp.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_coexp_sp.cpp -o cal_coexp_sp.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c cal_conn.cpp -o cal_conn.o -... -installing to /tmp/workdir/SiFINeT/old/SiFINeT.Rcheck/00LOCK-SiFINeT/00new/SiFINeT/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SiFINeT’ -* removing ‘/tmp/workdir/SiFINeT/old/SiFINeT.Rcheck/SiFINeT’ - - -``` -# sigminer - -
- -* Version: 2.3.1 -* GitHub: https://github.com/ShixiangWang/sigminer -* Source code: https://github.com/cran/sigminer -* Date/Publication: 2024-05-11 08:50:02 UTC -* Number of recursive dependencies: 212 - -Run `revdepcheck::cloud_details(, "sigminer")` for more info - -
- -## Newly broken - -* checking whether package ‘sigminer’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/sigminer/new/sigminer.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking installed package size ... NOTE - ``` - installed size is 7.9Mb - sub-directories of 1Mb or more: - R 1.0Mb - data 2.0Mb - extdata 1.0Mb - help 1.7Mb - libs 1.3Mb - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘sigminer’ ... -** package ‘sigminer’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c calc_cosine.cpp -o calc_cosine.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c get_intersect_size.cpp -o get_intersect_size.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sigminer.so RcppExports.o calc_cosine.o get_intersect_size.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sigminer/new/sigminer.Rcheck/00LOCK-sigminer/00new/sigminer/libs -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'NMF', details: - call: is.element(models, models.wraps) - error: unused argument (models.wraps) -Execution halted -ERROR: lazy loading failed for package ‘sigminer’ -* removing ‘/tmp/workdir/sigminer/new/sigminer.Rcheck/sigminer’ - - -``` -### CRAN - -``` -* installing *source* package ‘sigminer’ ... -** package ‘sigminer’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c calc_cosine.cpp -o calc_cosine.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c get_intersect_size.cpp -o get_intersect_size.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sigminer.so RcppExports.o calc_cosine.o get_intersect_size.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sigminer/old/sigminer.Rcheck/00LOCK-sigminer/00new/sigminer/libs -... -** help -*** installing help indices -*** copying figures -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** checking absolute paths in shared objects and dynamic libraries -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (sigminer) - - -``` -# Signac - -
- -* Version: 1.14.0 -* GitHub: https://github.com/stuart-lab/signac -* Source code: https://github.com/cran/Signac -* Date/Publication: 2024-08-21 07:40:02 UTC -* Number of recursive dependencies: 246 - -Run `revdepcheck::cloud_details(, "Signac")` for more info - -
- -## In both - -* checking whether package ‘Signac’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Signac/new/Signac.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Signac’ ... -** package ‘Signac’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c group.cpp -o group.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split.cpp -o split.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c validate.cpp -o validate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Signac’ -* removing ‘/tmp/workdir/Signac/new/Signac.Rcheck/Signac’ - - -``` -### CRAN - -``` -* installing *source* package ‘Signac’ ... -** package ‘Signac’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c group.cpp -o group.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split.cpp -o split.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c validate.cpp -o validate.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Signac’ -* removing ‘/tmp/workdir/Signac/old/Signac.Rcheck/Signac’ - - -``` -# SimplyAgree - -
- -* Version: 0.2.0 -* GitHub: https://github.com/arcaldwell49/SimplyAgree -* Source code: https://github.com/cran/SimplyAgree -* Date/Publication: 2024-03-21 14:20:06 UTC -* Number of recursive dependencies: 118 - -Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info - -
- -## In both - -* checking whether package ‘SimplyAgree’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SimplyAgree’ ... -** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SimplyAgree’ -* removing ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/SimplyAgree’ - - -``` -### CRAN - -``` -* installing *source* package ‘SimplyAgree’ ... -** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SimplyAgree’ -* removing ‘/tmp/workdir/SimplyAgree/old/SimplyAgree.Rcheck/SimplyAgree’ - - -``` -# smer - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/smer -* Number of recursive dependencies: 114 - -Run `revdepcheck::cloud_details(, "smer")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# SNPassoc - -
- -* Version: 2.1-2 -* GitHub: https://github.com/isglobal-brge/SNPassoc -* Source code: https://github.com/cran/SNPassoc -* Date/Publication: 2024-10-28 17:30:02 UTC -* Number of recursive dependencies: 164 - -Run `revdepcheck::cloud_details(, "SNPassoc")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SNPassoc/new/SNPassoc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SNPassoc/DESCRIPTION’ ... OK -... -* this is package ‘SNPassoc’ version ‘2.1-2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘haplo.stats’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SNPassoc/old/SNPassoc.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SNPassoc/DESCRIPTION’ ... OK -... -* this is package ‘SNPassoc’ version ‘2.1-2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘haplo.stats’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# snplinkage - -
- -* Version: 1.2.0 -* GitHub: NA -* Source code: https://github.com/cran/snplinkage -* Date/Publication: 2024-09-09 19:10:02 UTC -* Number of recursive dependencies: 155 - -Run `revdepcheck::cloud_details(, "snplinkage")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/snplinkage/new/snplinkage.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘snplinkage/DESCRIPTION’ ... OK -... -* this is package ‘snplinkage’ version ‘1.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘GWASTools’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/snplinkage/old/snplinkage.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘snplinkage/DESCRIPTION’ ... OK -... -* this is package ‘snplinkage’ version ‘1.2.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘GWASTools’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# SoupX - -
- -* Version: 1.6.2 -* GitHub: https://github.com/constantAmateur/SoupX -* Source code: https://github.com/cran/SoupX -* Date/Publication: 2022-11-01 14:00:03 UTC -* Number of recursive dependencies: 202 - -Run `revdepcheck::cloud_details(, "SoupX")` for more info - -
- -## In both - -* checking whether package ‘SoupX’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SoupX/new/SoupX.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SoupX’ ... -** package ‘SoupX’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SoupX’ -* removing ‘/tmp/workdir/SoupX/new/SoupX.Rcheck/SoupX’ - - -``` -### CRAN - -``` -* installing *source* package ‘SoupX’ ... -** package ‘SoupX’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SoupX’ -* removing ‘/tmp/workdir/SoupX/old/SoupX.Rcheck/SoupX’ - - -``` -# SpaCCI - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/SpaCCI -* Date/Publication: 2025-01-18 23:10:02 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "SpaCCI")` for more info - -
- -## In both - -* checking whether package ‘SpaCCI’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SpaCCI/new/SpaCCI.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SpaCCI’ ... -** package ‘SpaCCI’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c permutation_func.cpp -o permutation_func.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SpaCCI.so RcppExports.o permutation_func.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/SpaCCI/new/SpaCCI.Rcheck/00LOCK-SpaCCI/00new/SpaCCI/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SpaCCI’ -* removing ‘/tmp/workdir/SpaCCI/new/SpaCCI.Rcheck/SpaCCI’ - - -``` -### CRAN - -``` -* installing *source* package ‘SpaCCI’ ... -** package ‘SpaCCI’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c permutation_func.cpp -o permutation_func.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SpaCCI.so RcppExports.o permutation_func.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/SpaCCI/old/SpaCCI.Rcheck/00LOCK-SpaCCI/00new/SpaCCI/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SpaCCI’ -* removing ‘/tmp/workdir/SpaCCI/old/SpaCCI.Rcheck/SpaCCI’ - - -``` -# sparsereg - -
- -* Version: 1.2 -* GitHub: NA -* Source code: https://github.com/cran/sparsereg -* Date/Publication: 2016-03-10 23:32:18 -* Number of recursive dependencies: 50 - -Run `revdepcheck::cloud_details(, "sparsereg")` for more info - -
- -## In both - -* checking whether package ‘sparsereg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/sparsereg/new/sparsereg.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘sparsereg’ ... -** package ‘sparsereg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makeinter.cpp -o makeinter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makethreeinter.cpp -o makethreeinter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c subgroup.cpp -o subgroup.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sparsereg.so RcppExports.o makeinter.o makethreeinter.o subgroup.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sparsereg/new/sparsereg.Rcheck/00LOCK-sparsereg/00new/sparsereg/libs -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sparsereg’ -* removing ‘/tmp/workdir/sparsereg/new/sparsereg.Rcheck/sparsereg’ - - -``` -### CRAN - -``` -* installing *source* package ‘sparsereg’ ... -** package ‘sparsereg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makeinter.cpp -o makeinter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makethreeinter.cpp -o makethreeinter.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c subgroup.cpp -o subgroup.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sparsereg.so RcppExports.o makeinter.o makethreeinter.o subgroup.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/sparsereg/old/sparsereg.Rcheck/00LOCK-sparsereg/00new/sparsereg/libs -** R -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘sparsereg’ -* removing ‘/tmp/workdir/sparsereg/old/sparsereg.Rcheck/sparsereg’ - - -``` -# spectralAnalysis - -
- -* Version: 4.3.3 -* GitHub: NA -* Source code: https://github.com/cran/spectralAnalysis -* Date/Publication: 2024-01-30 08:50:02 UTC -* Number of recursive dependencies: 117 - -Run `revdepcheck::cloud_details(, "spectralAnalysis")` for more info - -
- -## Newly broken - -* checking whether package ‘spectralAnalysis’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/spectralAnalysis/new/spectralAnalysis.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking installed package size ... NOTE - ``` - installed size is 6.0Mb - sub-directories of 1Mb or more: - doc 4.6Mb - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘spectralAnalysis’ ... -** package ‘spectralAnalysis’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'NMF', details: - call: is.element(models, models.wraps) - error: unused argument (models.wraps) -Execution halted -ERROR: lazy loading failed for package ‘spectralAnalysis’ -* removing ‘/tmp/workdir/spectralAnalysis/new/spectralAnalysis.Rcheck/spectralAnalysis’ - - -``` -### CRAN - -``` -* installing *source* package ‘spectralAnalysis’ ... -** package ‘spectralAnalysis’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Creating a new generic function for ‘smooth’ in package ‘spectralAnalysis’ -** help -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (spectralAnalysis) - - -``` -# spikeSlabGAM - -
- -* Version: 1.1-20 -* GitHub: https://github.com/fabian-s/spikeSlabGAM -* Source code: https://github.com/cran/spikeSlabGAM -* Date/Publication: 2024-10-22 17:30:02 UTC -* Number of recursive dependencies: 77 - -Run `revdepcheck::cloud_details(, "spikeSlabGAM")` for more info - -
- -## In both - -* checking whether package ‘spikeSlabGAM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/spikeSlabGAM/new/spikeSlabGAM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘spikeSlabGAM’ ... -** package ‘spikeSlabGAM’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sampler.c -o sampler.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spikeSlabGAM_init.c -o spikeSlabGAM_init.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o spikeSlabGAM.so sampler.o spikeSlabGAM_init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/spikeSlabGAM/new/spikeSlabGAM.Rcheck/00LOCK-spikeSlabGAM/00new/spikeSlabGAM/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘spikeSlabGAM’ -* removing ‘/tmp/workdir/spikeSlabGAM/new/spikeSlabGAM.Rcheck/spikeSlabGAM’ - - -``` -### CRAN - -``` -* installing *source* package ‘spikeSlabGAM’ ... -** package ‘spikeSlabGAM’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sampler.c -o sampler.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spikeSlabGAM_init.c -o spikeSlabGAM_init.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o spikeSlabGAM.so sampler.o spikeSlabGAM_init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/spikeSlabGAM/old/spikeSlabGAM.Rcheck/00LOCK-spikeSlabGAM/00new/spikeSlabGAM/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘spikeSlabGAM’ -* removing ‘/tmp/workdir/spikeSlabGAM/old/spikeSlabGAM.Rcheck/spikeSlabGAM’ - - -``` -# stabiliser - -
- -* Version: 1.0.6 -* GitHub: NA -* Source code: https://github.com/cran/stabiliser -* Date/Publication: 2023-05-17 11:00:05 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "stabiliser")` for more info - -
- -## In both - -* checking whether package ‘stabiliser’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/stabiliser/new/stabiliser.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘stabiliser’ ... -** package ‘stabiliser’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘maditr’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘stabiliser’ -* removing ‘/tmp/workdir/stabiliser/new/stabiliser.Rcheck/stabiliser’ - - -``` -### CRAN - -``` -* installing *source* package ‘stabiliser’ ... -** package ‘stabiliser’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘maditr’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘stabiliser’ -* removing ‘/tmp/workdir/stabiliser/old/stabiliser.Rcheck/stabiliser’ - - -``` -# statsr - -
- -* Version: 0.3.0 -* GitHub: https://github.com/StatsWithR/statsr -* Source code: https://github.com/cran/statsr -* Date/Publication: 2021-01-22 20:40:03 UTC -* Number of recursive dependencies: 96 - -Run `revdepcheck::cloud_details(, "statsr")` for more info - -
- -## In both - -* checking whether package ‘statsr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/statsr/new/statsr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘statsr’ ... -** package ‘statsr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘BayesFactor’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘statsr’ -* removing ‘/tmp/workdir/statsr/new/statsr.Rcheck/statsr’ - - -``` -### CRAN - -``` -* installing *source* package ‘statsr’ ... -** package ‘statsr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘BayesFactor’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘statsr’ -* removing ‘/tmp/workdir/statsr/old/statsr.Rcheck/statsr’ - - -``` -# streamDAG - -
- -* Version: 1.5-9 -* GitHub: NA -* Source code: https://github.com/cran/streamDAG -* Date/Publication: 2025-01-14 21:50:02 UTC -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "streamDAG")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘streamDAG/DESCRIPTION’ ... OK -* this is package ‘streamDAG’ version ‘1.5-9’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘asbio’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘streamDAG/DESCRIPTION’ ... OK -* this is package ‘streamDAG’ version ‘1.5-9’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘asbio’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# survex - -
- -* Version: 1.2.0 -* GitHub: https://github.com/ModelOriented/survex -* Source code: https://github.com/cran/survex -* Date/Publication: 2023-10-24 18:50:07 UTC -* Number of recursive dependencies: 182 - -Run `revdepcheck::cloud_details(, "survex")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/survex/new/survex.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survex/DESCRIPTION’ ... OK -... -  A new explainer has been created!  -> -> y <- cph_exp$y -> times <- cph_exp$times -> surv <- cph_exp$predict_survival_function(cph, cph_exp$data, times) -Error in loadNamespace(x) : there is no package called ‘riskRegression’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/survex/old/survex.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survex/DESCRIPTION’ ... OK -... -  A new explainer has been created!  -> -> y <- cph_exp$y -> times <- cph_exp$times -> surv <- cph_exp$predict_survival_function(cph, cph_exp$data, times) -Error in loadNamespace(x) : there is no package called ‘riskRegression’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -* DONE -Status: 1 ERROR, 1 NOTE - - - - - -``` -# survHE - -
- -* Version: 2.0.2 -* GitHub: https://github.com/giabaio/survHE -* Source code: https://github.com/cran/survHE -* Date/Publication: 2024-10-04 09:50:02 UTC -* Number of recursive dependencies: 129 - -Run `revdepcheck::cloud_details(, "survHE")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/survHE/new/survHE.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survHE/DESCRIPTION’ ... OK -... -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -Packages suggested but not available for checking: - 'survHEinla', 'survHEhmc' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/survHE/old/survHE.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘survHE/DESCRIPTION’ ... OK -... -* checking package dependencies ... ERROR -Package required but not available: ‘rms’ - -Packages suggested but not available for checking: - 'survHEinla', 'survHEhmc' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# survidm - -
- -* Version: 1.3.2 -* GitHub: NA -* Source code: https://github.com/cran/survidm -* Date/Publication: 2021-06-24 23:20:02 UTC -* Number of recursive dependencies: 87 - -Run `revdepcheck::cloud_details(, "survidm")` for more info - -
- -## In both - -* checking whether package ‘survidm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/survidm/new/survidm.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘survidm’ ... -** package ‘survidm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survidm_init.c -o survidm_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survivalBIV.c -o survivalBIV.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o survidm.so survidm_init.o survivalBIV.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/survidm/new/survidm.Rcheck/00LOCK-survidm/00new/survidm/libs -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘survidm’ -* removing ‘/tmp/workdir/survidm/new/survidm.Rcheck/survidm’ - - -``` -### CRAN - -``` -* installing *source* package ‘survidm’ ... -** package ‘survidm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survidm_init.c -o survidm_init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survivalBIV.c -o survivalBIV.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o survidm.so survidm_init.o survivalBIV.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/survidm/old/survidm.Rcheck/00LOCK-survidm/00new/survidm/libs -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘survidm’ -* removing ‘/tmp/workdir/survidm/old/survidm.Rcheck/survidm’ - - -``` -# tempted - -
- -* Version: 0.1.1 -* GitHub: https://github.com/pixushi/tempted -* Source code: https://github.com/cran/tempted -* Date/Publication: 2024-05-09 02:40:02 UTC -* Number of recursive dependencies: 37 - -Run `revdepcheck::cloud_details(, "tempted")` for more info - -
- -## In both - -* checking whether package ‘tempted’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tempted/new/tempted.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tempted’ ... -** package ‘tempted’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘tempted’ -* removing ‘/tmp/workdir/tempted/new/tempted.Rcheck/tempted’ - - -``` -### CRAN - -``` -* installing *source* package ‘tempted’ ... -** package ‘tempted’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘tempted’ -* removing ‘/tmp/workdir/tempted/old/tempted.Rcheck/tempted’ - - -``` -# TestAnaAPP - -
- -* Version: 1.1.2 -* GitHub: https://github.com/jiangyouxiang/TestAnaAPP -* Source code: https://github.com/cran/TestAnaAPP -* Date/Publication: 2024-11-09 04:00:02 UTC -* Number of recursive dependencies: 255 - -Run `revdepcheck::cloud_details(, "TestAnaAPP")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘TestAnaAPP/DESCRIPTION’ ... OK -... -* this is package ‘TestAnaAPP’ version ‘1.1.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘lordif’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/TestAnaAPP/old/TestAnaAPP.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘TestAnaAPP/DESCRIPTION’ ... OK -... -* this is package ‘TestAnaAPP’ version ‘1.1.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘lordif’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# tidydr - -
- -* Version: 0.0.5 -* GitHub: https://github.com/YuLab-SMU/tidydr -* Source code: https://github.com/cran/tidydr -* Date/Publication: 2023-03-08 09:20:02 UTC -* Number of recursive dependencies: 79 - -Run `revdepcheck::cloud_details(, "tidydr")` for more info - -
- -## Newly broken - -* checking whether package ‘tidydr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tidydr’ ... -** package ‘tidydr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in get(x, envir = ns, inherits = FALSE) : - object 'len0_null' not found -Error: unable to load R code in package ‘tidydr’ -Execution halted -ERROR: lazy loading failed for package ‘tidydr’ -* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’ - - -``` -### CRAN - -``` -* installing *source* package ‘tidydr’ ... -** package ‘tidydr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (tidydr) - - -``` -# tidyEdSurvey - -
- -* Version: 0.1.3 -* GitHub: NA -* Source code: https://github.com/cran/tidyEdSurvey -* Date/Publication: 2024-05-14 20:20:03 UTC -* Number of recursive dependencies: 113 - -Run `revdepcheck::cloud_details(, "tidyEdSurvey")` for more info - -
- -## In both - -* checking whether package ‘tidyEdSurvey’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tidyEdSurvey’ ... -** package ‘tidyEdSurvey’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -In addition: Warning message: -In check_dep_version() : ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Execution halted -ERROR: lazy loading failed for package ‘tidyEdSurvey’ -* removing ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/tidyEdSurvey’ - - -``` -### CRAN - -``` -* installing *source* package ‘tidyEdSurvey’ ... -** package ‘tidyEdSurvey’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -In addition: Warning message: -In check_dep_version() : ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Execution halted -ERROR: lazy loading failed for package ‘tidyEdSurvey’ -* removing ‘/tmp/workdir/tidyEdSurvey/old/tidyEdSurvey.Rcheck/tidyEdSurvey’ - - -``` -# tidyseurat - -
- -* Version: 0.8.0 -* GitHub: https://github.com/stemangiola/tidyseurat -* Source code: https://github.com/cran/tidyseurat -* Date/Publication: 2024-01-10 04:50:02 UTC -* Number of recursive dependencies: 196 - -Run `revdepcheck::cloud_details(, "tidyseurat")` for more info - -
- -## In both - -* checking whether package ‘tidyseurat’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tidyseurat’ ... -** package ‘tidyseurat’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘tidyseurat’ -* removing ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/tidyseurat’ - - -``` -### CRAN - -``` -* installing *source* package ‘tidyseurat’ ... -** package ‘tidyseurat’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘tidyseurat’ -* removing ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck/tidyseurat’ - - -``` -# tidyvpc - -
- -* Version: 1.5.2 -* GitHub: https://github.com/certara/tidyvpc -* Source code: https://github.com/cran/tidyvpc -* Date/Publication: 2024-11-21 23:10:02 UTC -* Number of recursive dependencies: 180 - -Run `revdepcheck::cloud_details(, "tidyvpc")` for more info - -
- -## In both - -* checking whether package ‘tidyvpc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tidyvpc/new/tidyvpc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tidyvpc’ ... -** package ‘tidyvpc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘tidyvpc’ -* removing ‘/tmp/workdir/tidyvpc/new/tidyvpc.Rcheck/tidyvpc’ - - -``` -### CRAN - -``` -* installing *source* package ‘tidyvpc’ ... -** package ‘tidyvpc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘tidyvpc’ -* removing ‘/tmp/workdir/tidyvpc/old/tidyvpc.Rcheck/tidyvpc’ - - -``` -# tinyarray - -
- -* Version: 2.4.2 -* GitHub: https://github.com/xjsun1221/tinyarray -* Source code: https://github.com/cran/tinyarray -* Date/Publication: 2024-06-13 14:20:02 UTC -* Number of recursive dependencies: 250 - -Run `revdepcheck::cloud_details(, "tinyarray")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/tinyarray/new/tinyarray.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘tinyarray/DESCRIPTION’ ... OK -... -* this is package ‘tinyarray’ version ‘2.4.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/tinyarray/old/tinyarray.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 - GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 -* running under: Ubuntu 24.04.1 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘tinyarray/DESCRIPTION’ ... OK -... -* this is package ‘tinyarray’ version ‘2.4.2’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# treeclim - -
- -* Version: 2.0.7.1 -* GitHub: https://github.com/cszang/treeclim -* Source code: https://github.com/cran/treeclim -* Date/Publication: 2024-12-16 16:20:02 UTC -* Number of recursive dependencies: 60 - -Run `revdepcheck::cloud_details(, "treeclim")` for more info - -
- -## In both - -* checking whether package ‘treeclim’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/treeclim/new/treeclim.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘treeclim’ ... -** package ‘treeclim’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun.cpp -o corfun.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun_exact.cpp -o corfun_exact.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun_noboot.cpp -o corfun_noboot.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c pcor.cpp -o pcor.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘treeclim’ -* removing ‘/tmp/workdir/treeclim/new/treeclim.Rcheck/treeclim’ - - -``` -### CRAN - -``` -* installing *source* package ‘treeclim’ ... -** package ‘treeclim’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun.cpp -o corfun.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun_exact.cpp -o corfun_exact.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c corfun_noboot.cpp -o corfun_noboot.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c pcor.cpp -o pcor.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘treeclim’ -* removing ‘/tmp/workdir/treeclim/old/treeclim.Rcheck/treeclim’ - - -``` -# TriDimRegression - -
- -* Version: 1.0.2 -* GitHub: https://github.com/alexander-pastukhov/tridim-regression -* Source code: https://github.com/cran/TriDimRegression -* Date/Publication: 2023-09-13 14:10:03 UTC -* Number of recursive dependencies: 98 - -Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info - -
- -## In both - -* checking whether package ‘TriDimRegression’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘TriDimRegression’ ... -** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘TriDimRegression’ -* removing ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/TriDimRegression’ - - -``` -### CRAN - -``` -* installing *source* package ‘TriDimRegression’ ... -** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘TriDimRegression’ -* removing ‘/tmp/workdir/TriDimRegression/old/TriDimRegression.Rcheck/TriDimRegression’ - - -``` -# TSrepr - -
- -* Version: 1.1.0 -* GitHub: https://github.com/PetoLau/TSrepr -* Source code: https://github.com/cran/TSrepr -* Date/Publication: 2020-07-13 06:50:15 UTC -* Number of recursive dependencies: 71 - -Run `revdepcheck::cloud_details(, "TSrepr")` for more info - -
- -## In both - -* checking whether package ‘TSrepr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/TSrepr/new/TSrepr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘TSrepr’ ... -** package ‘TSrepr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c FeatureClippingTrending.cpp -o FeatureClippingTrending.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c measures.cpp -o measures.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c normalizations.cpp -o normalizations.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘TSrepr’ -* removing ‘/tmp/workdir/TSrepr/new/TSrepr.Rcheck/TSrepr’ - - -``` -### CRAN - -``` -* installing *source* package ‘TSrepr’ ... -** package ‘TSrepr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c FeatureClippingTrending.cpp -o FeatureClippingTrending.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c measures.cpp -o measures.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c normalizations.cpp -o normalizations.o -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘TSrepr’ -* removing ‘/tmp/workdir/TSrepr/old/TSrepr.Rcheck/TSrepr’ - - -``` -# twang - -
- -* Version: 2.6.1 -* GitHub: NA -* Source code: https://github.com/cran/twang -* Date/Publication: 2024-07-22 16:10:01 UTC -* Number of recursive dependencies: 53 - -Run `revdepcheck::cloud_details(, "twang")` for more info - -
- -## In both - -* checking whether package ‘twang’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/twang/new/twang.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘twang’ ... -** package ‘twang’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ks.c -o ks.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o twang.so init.o ks.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/twang/new/twang.Rcheck/00LOCK-twang/00new/twang/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘twang’ -* removing ‘/tmp/workdir/twang/new/twang.Rcheck/twang’ - - -``` -### CRAN - -``` -* installing *source* package ‘twang’ ... -** package ‘twang’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ks.c -o ks.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o twang.so init.o ks.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/twang/old/twang.Rcheck/00LOCK-twang/00new/twang/libs -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘twang’ -* removing ‘/tmp/workdir/twang/old/twang.Rcheck/twang’ - - -``` -# vdg - -
- -* Version: 1.2.3 -* GitHub: NA -* Source code: https://github.com/cran/vdg -* Date/Publication: 2024-04-23 13:00:02 UTC -* Number of recursive dependencies: 45 - -Run `revdepcheck::cloud_details(, "vdg")` for more info - -
- -## In both - -* checking whether package ‘vdg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/vdg/new/vdg.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘vdg’ ... -** package ‘vdg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using Fortran compiler: ‘GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gfortran -fpic -g -O2 -c FDS.f -o FDS.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o vdg.so FDS.o -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/vdg/new/vdg.Rcheck/00LOCK-vdg/00new/vdg/libs -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘vdg’ -* removing ‘/tmp/workdir/vdg/new/vdg.Rcheck/vdg’ - - -``` -### CRAN - -``` -* installing *source* package ‘vdg’ ... -** package ‘vdg’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using Fortran compiler: ‘GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ -gfortran -fpic -g -O2 -c FDS.f -o FDS.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o vdg.so FDS.o -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/vdg/old/vdg.Rcheck/00LOCK-vdg/00new/vdg/libs -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘vdg’ -* removing ‘/tmp/workdir/vdg/old/vdg.Rcheck/vdg’ - - -``` -# VecDep - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/VecDep -* Number of recursive dependencies: 100 - -Run `revdepcheck::cloud_details(, "VecDep")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# visa - -
- -* Version: 0.1.0 -* GitHub: https://github.com/kang-yu/visa -* Source code: https://github.com/cran/visa -* Date/Publication: 2021-04-20 07:20:02 UTC -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "visa")` for more info - -
- -## In both - -* checking whether package ‘visa’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/visa/new/visa.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘visa’ ... -** package ‘visa’ successfully unpacked and MD5 sums checked +* installing *source* package ‘xpose’ ... +** package ‘xpose’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB +Error in get("print.ggplot", envir = asNamespace("ggplot2")) : + object 'print.ggplot' not found +Warning: namespace ‘xpose’ is not available and has been replaced +by .GlobalEnv when processing object ‘xpdb_ex_pk’ +... +Warning: namespace ‘xpose’ is not available and has been replaced +by .GlobalEnv when processing object ‘xpdb_ex_pk’ ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in get("print.ggplot", envir = asNamespace("ggplot2")) : + object 'print.ggplot' not found +Error: unable to load R code in package ‘xpose’ Execution halted -ERROR: lazy loading failed for package ‘visa’ -* removing ‘/tmp/workdir/visa/new/visa.Rcheck/visa’ +ERROR: lazy loading failed for package ‘xpose’ +* removing ‘/tmp/workdir/xpose/new/xpose.Rcheck/xpose’ ``` ### CRAN ``` -* installing *source* package ‘visa’ ... -** package ‘visa’ successfully unpacked and MD5 sums checked +* installing *source* package ‘xpose’ ... +** package ‘xpose’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘visa’ -* removing ‘/tmp/workdir/visa/old/visa.Rcheck/visa’ - - -``` -# VisualizeSimon2Stage - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/VisualizeSimon2Stage -* Number of recursive dependencies: 36 - -Run `revdepcheck::cloud_details(, "VisualizeSimon2Stage")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# wppExplorer - -
- -* Version: 2.3-4 -* GitHub: NA -* Source code: https://github.com/cran/wppExplorer -* Date/Publication: 2020-04-09 09:10:02 UTC -* Number of recursive dependencies: 99 - -Run `revdepcheck::cloud_details(, "wppExplorer")` for more info - -
- -## Newly broken - -* checking whether package ‘wppExplorer’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/wppExplorer/new/wppExplorer.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘wppExplorer’ ... -** package ‘wppExplorer’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in is.element(wpp.data.env$iso3166$uncode, wpp.data.env$popM$country_code) : - unused argument (wpp.data.env$popM$country_code) -Error: unable to load R code in package ‘wppExplorer’ -Execution halted -ERROR: lazy loading failed for package ‘wppExplorer’ -* removing ‘/tmp/workdir/wppExplorer/new/wppExplorer.Rcheck/wppExplorer’ - - -``` -### CRAN - -``` -* installing *source* package ‘wppExplorer’ ... -** package ‘wppExplorer’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading ** help *** installing help indices +*** copying figures ** building package indices +** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path -* DONE (wppExplorer) - - -``` -# WRTDStidal - -
- -* Version: 1.1.4 -* GitHub: https://github.com/fawda123/WRTDStidal -* Source code: https://github.com/cran/WRTDStidal -* Date/Publication: 2023-10-20 09:00:11 UTC -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "WRTDStidal")` for more info - -
- -## In both - -* checking whether package ‘WRTDStidal’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/WRTDStidal/new/WRTDStidal.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘WRTDStidal’ ... -** package ‘WRTDStidal’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘WRTDStidal’ -* removing ‘/tmp/workdir/WRTDStidal/new/WRTDStidal.Rcheck/WRTDStidal’ - - -``` -### CRAN - -``` -* installing *source* package ‘WRTDStidal’ ... -** package ‘WRTDStidal’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘WRTDStidal’ -* removing ‘/tmp/workdir/WRTDStidal/old/WRTDStidal.Rcheck/WRTDStidal’ - - -``` -# xxdi - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/xxdi -* Number of recursive dependencies: 37 - -Run `revdepcheck::cloud_details(, "xxdi")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - +* DONE (xpose) ``` diff --git a/revdep/problems.md b/revdep/problems.md index e69de29bb2..82419c92f9 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -0,0 +1,61788 @@ +# accrualPlot + +
+ +* Version: 1.0.7 +* GitHub: https://github.com/CTU-Bern/accrualPlot +* Source code: https://github.com/cran/accrualPlot +* Date/Publication: 2022-08-16 10:10:05 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "accrualPlot")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘accrualPlot.Rmd’ using rmarkdown + ``` + +# activAnalyzer + +
+ +* Version: 2.1.2 +* GitHub: https://github.com/pydemull/activAnalyzer +* Source code: https://github.com/cran/activAnalyzer +* Date/Publication: 2024-09-23 23:40:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "activAnalyzer")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(shinytest2) + > library(activAnalyzer) + > + > test_check("activAnalyzer") + Loading required package: shiny + ... + 16. └─ggplot2:::add_ggplot(e1, e2, e2name) + 17. └─ggplot2::ggplot_add(object, p, objectname) + 18. ├─S7::S7_dispatch() + 19. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 20. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 21. └─rlang::abort(...) + + [ FAIL 9 | WARN 8 | SKIP 1 | PASS 181 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘activAnalyzer.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.3Mb + sub-directories of 1Mb or more: + R 1.0Mb + doc 1.0Mb + extdata 2.0Mb + ``` + +# actxps + +
+ +* Version: 1.6.0 +* GitHub: https://github.com/mattheaphy/actxps +* Source code: https://github.com/cran/actxps +* Date/Publication: 2025-01-07 13:00:02 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "actxps")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘actxps.Rmd’ using rmarkdown + + Quitting from actxps.Rmd:10-18 [setup] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `get()`: + ! object 'ggplot_build.ggplot' not found + --- + Backtrace: + ... + + Error: processing vignette 'transactions.Rmd' failed with diagnostics: + object 'ggplot_build.ggplot' not found + --- failed re-building ‘transactions.Rmd’ + + SUMMARY: processing the following files failed: + ‘actxps.Rmd’ ‘misc.Rmd’ ‘transactions.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# adjclust + +
+ +* Version: 0.6.10 +* GitHub: https://github.com/pneuvial/adjclust +* Source code: https://github.com/cran/adjclust +* Date/Publication: 2024-10-08 08:10:02 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "adjclust")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library("testthat") + > library("adjclust") + > + > test_check("adjclust") + object has no names - using numeric order for row/column names + [ FAIL 4 | WARN 0 | SKIP 3 | PASS 154 ] + + ... + ! `dim(data)` must return an of length 2. + ── Error ('test_plotSim.R:98:3'): 'plotSim' works for 'dist' ─────────────────── + Error in `fortify(data, ...)`: `data` must be a , or an object coercible by `fortify()`, or + a valid -like object coercible by `as.data.frame()`. + Caused by error in `check_data_frame_like()`: + ! `dim(data)` must return an of length 2. + + [ FAIL 4 | WARN 0 | SKIP 3 | PASS 154 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.1Mb + sub-directories of 1Mb or more: + doc 2.1Mb + libs 2.5Mb + ``` + +# adjustedCurves + +
+ +* Version: 0.11.2 +* GitHub: https://github.com/RobinDenz1/adjustedCurves +* Source code: https://github.com/cran/adjustedCurves +* Date/Publication: 2024-07-29 14:30:02 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "adjustedCurves")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘adjustedCurves-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.adjustedsurv + > ### Title: Plot Confounder-Adjusted Survival Curves + > ### Aliases: plot.adjustedsurv + > + > ### ** Examples + > + > library(adjustedCurves) + ... + + plot(adjsurv) + theme_bw() + + } + Warning: Ignoring unknown labels: + • `linetype = "Group"` + • `fill = "Group"` + Loading required namespace: cowplot + Warning: Ignoring unknown labels: + • `linetype = "Group"` + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(p_surv)@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(adjustedCurves) + > + > library(dplyr) + + Attaching package: 'dplyr' + + The following objects are masked from 'package:stats': + ... + • plot.adjustedsurv/risk-table-stratify-customized-text.svg + • plot.adjustedsurv/risk-table-theme.svg + • plot.adjustedsurv/risk-table-use-weights-all.svg + • plot.adjustedsurv/risk-table-use-weights-stratify.svg + • plot.adjustedsurv/risk-table-weights-present-but-not-used.svg + • plot.adjustedsurv/risk-table-with-more-breaks.svg + • plot.adjustedsurv/risk-table-y-vjust-all.svg + • plot.adjustedsurv/risk-table-y-vjust-stratify.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘comparing_groups.rmd’ using rmarkdown + + Quitting from comparing_groups.rmd:59-62 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(p_surv)@layout`? + --- + Backtrace: + ... + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'comparing_groups.rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(p_surv)@layout`? + --- failed re-building ‘comparing_groups.rmd’ + + --- re-building ‘faq.rmd’ using rmarkdown + --- finished re-building ‘faq.rmd’ + + --- re-building ‘introduction.Rmd’ using rmarkdown + ``` + +# adklakedata + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/lawinslow/adklakedata +* Source code: https://github.com/cran/adklakedata +* Date/Publication: 2018-02-16 19:08:16 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "adklakedata")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘adklakedata-Ex.R’ failed + The error most likely occurred in: + + > ### Name: adk_lake_shapes + > ### Title: Return path to Lake Polygons Shapefile + > ### Aliases: adk_lake_shapes + > + > ### ** Examples + > + > library(sf) + Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE + > bl = read_sf(adklakedata::adk_shape()) + Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : + package tibble not available: install first? + Calls: read_sf ... st_read -> st_read.character -> process_cpl_read_ogr + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# adw + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/PanfengZhang/adw +* Source code: https://github.com/cran/adw +* Date/Publication: 2024-04-15 19:10:16 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "adw")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘adw-Ex.R’ failed + The error most likely occurred in: + + > ### Name: adw + > ### Title: Angular Distance Weighting Interpolation. + > ### Aliases: adw + > + > ### ** Examples + > + > set.seed(2) + ... + 4 111.75 31.25 -0.47570806 + 5 112.25 31.25 -1.57521787 + 6 112.75 31.25 -1.10541492 + > + > # example 2 + > hmap <- cnmap::getMap(code = "410000") |> sf::st_make_valid() # return a 'sf' object. + Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : + package tibble not available: install first? + Calls: ... st_read -> st_read.character -> process_cpl_read_ogr + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Introduction.Rmd’ using rmarkdown + + Quitting from Introduction.Rmd:47-74 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `process_cpl_read_ogr()`: + ! package tibble not available: install first? + --- + Backtrace: + ... + + Error: processing vignette 'Introduction.Rmd' failed with diagnostics: + package tibble not available: install first? + --- failed re-building ‘Introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘Introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# AeRobiology + +
+ +* Version: 2.0.1 +* GitHub: NA +* Source code: https://github.com/cran/AeRobiology +* Date/Publication: 2019-06-03 06:20:03 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "AeRobiology")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘my-vignette.Rmd’ using rmarkdown + ``` + +# afcharts + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/best-practice-and-impact/afcharts +* Source code: https://github.com/cran/afcharts +* Date/Publication: 2025-01-13 15:20:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "afcharts")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘accessibility.Rmd’ using rmarkdown + --- finished re-building ‘accessibility.Rmd’ + + --- re-building ‘colours.Rmd’ using rmarkdown + --- finished re-building ‘colours.Rmd’ + + --- re-building ‘cookbook.Rmd’ using rmarkdown + ``` + +# afex + +
+ +* Version: 1.4-1 +* GitHub: https://github.com/singmann/afex +* Source code: https://github.com/cran/afex +* Date/Publication: 2024-09-01 16:10:02 UTC +* Number of recursive dependencies: 238 + +Run `revdepcheck::cloud_details(, "afex")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown + ``` + +# AgroR + +
+ +* Version: 1.3.6 +* GitHub: NA +* Source code: https://github.com/cran/AgroR +* Date/Publication: 2024-04-24 02:20:18 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "AgroR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AgroR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: DBC.glm + > ### Title: Analysis: Randomized block design by glm + > ### Aliases: DBC.glm + > + > ### ** Examples + > + > data("aristolochia") + ... + trat prob SE asymp.LCL asymp.UCL .group + 15 15 0.00 0.00 0.00 0.00 d + 20 20 0.04 0.01 0.03 0.05 c + 25 25 0.47 0.02 0.44 0.51 b + 30 30 0.75 0.02 0.72 0.78 a + 35 35 0.54 0.02 0.50 0.57 b + Error in as.vector(x, "list") : + cannot coerce type 'object' to vector of type 'list' + Calls: DBC.glm -> as.list -> as.list.default + Execution halted + ``` + +# AgroReg + +
+ +* Version: 1.2.10 +* GitHub: NA +* Source code: https://github.com/cran/AgroReg +* Date/Publication: 2024-01-16 12:50:16 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "AgroReg")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AgroReg-Ex.R’ failed + The error most likely occurred in: + + > ### Name: adjust_scale + > ### Title: Utils: Adjust y and x scale + > ### Aliases: adjust_scale + > + > ### ** Examples + > + > library(AgroReg) + ... + > data("aristolochia") + > attach(aristolochia) + > a=LM(trat,resp) + + > b=LL(trat,resp,npar = "LL.3") + > a=plot_arrange(list(a,b),gray = TRUE) + Error in equation[[i]] <- plots[[i]][[3]]$plot$s : + replacement has length zero + Calls: plot_arrange + Execution halted + ``` + +# AgroTech + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/AgroTech +* Date/Publication: 2022-09-14 20:30:02 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "AgroTech")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AgroTech-Ex.R’ failed + The error most likely occurred in: + + > ### Name: markblue + > ### Title: Spray deposit (glowing blue marker) + > ### Aliases: markblue + > + > ### ** Examples + > + > data("example_markbluecurve") + ... + 4 0.6413714 ab + 1 0.6331792 ab + 2 0.4861496 b + 3 0.1564178 c + + + Error in as.vector(x, "list") : + cannot coerce type 'object' to vector of type 'list' + Calls: markblue ... eval -> eval -> dic.analysis -> as.list -> as.list.default + Execution halted + ``` + +# airGR + +
+ +* Version: 1.7.6 +* GitHub: NA +* Source code: https://github.com/cran/airGR +* Date/Publication: 2023-10-26 07:30:05 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "airGR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘V01_get_started.Rmd’ using rmarkdown + --- finished re-building ‘V01_get_started.Rmd’ + + --- re-building ‘V02.1_param_optim.Rmd’ using rmarkdown + ``` + +# airt + +
+ +* Version: 0.2.2 +* GitHub: NA +* Source code: https://github.com/cran/airt +* Date/Publication: 2023-08-08 12:50:09 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "airt")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘airt-Ex.R’ failed + The error most likely occurred in: + + > ### Name: latent_trait_analysis + > ### Title: Performs the latent trait analysis + > ### Aliases: latent_trait_analysis autoplot.latenttrait + > + > ### ** Examples + > + > # This is a dummy example. + ... + > x1 <- runif(200) + > x2 <- 2*x1 + rnorm(200, mean=0, sd=0.1) + > x3 <- 1 - x1 + rnorm(200, mean=0, sd=0.1) + > X <- cbind.data.frame(x1, x2, x3) + > max_item <- rep(max(x1, x2, x3),3) + > min_item <- rep(min(x1, x2, x3),3) + > mod <- cirtmodel(X, max.item=max_item, min.item=min_item) + > out <- latent_trait_analysis(X, mod$model$param, min_item= min_item, max_item = max_item) + Error: Can't get S7 properties with `$`. Did you mean `g@data`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘airt.Rmd’ using rmarkdown + ``` + +# akc + +
+ +* Version: 0.9.9.1 +* GitHub: https://github.com/hope-data-science/akc +* Source code: https://github.com/cran/akc +* Date/Publication: 2025-02-25 09:20:02 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "akc")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Benchmarking.Rmd’ using rmarkdown + --- finished re-building ‘Benchmarking.Rmd’ + + --- re-building ‘akc_vignette.Rmd’ using rmarkdown + + Quitting from akc_vignette.Rmd:89-92 [unnamed-chunk-7] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'akc_vignette.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘akc_vignette.Rmd’ + + --- re-building ‘tutorial_raw_text.Rmd’ using rmarkdown + ``` + +# ale + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/tripartio/ale +* Source code: https://github.com/cran/ale +* Date/Publication: 2025-04-09 20:50:02 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "ale")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + Caused by error: + ! Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(it.plot)@data`? + Backtrace: + ▆ + 1. └─testthat::expect_snapshot(ale_plots_to_data(plot(mb, type = "boot"))) at test-ModelBoot.R:75:5 + 2. └─rlang::cnd_signal(state$error) + + [ FAIL 2 | WARN 13 | SKIP 14 | PASS 74 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ale-intro.Rmd’ using rmarkdown + ``` + +# AlleleShift + +
+ +* Version: 1.1-2 +* GitHub: NA +* Source code: https://github.com/cran/AlleleShift +* Date/Publication: 2023-10-28 21:50:12 UTC +* Number of recursive dependencies: 170 + +Run `revdepcheck::cloud_details(, "AlleleShift")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AlleleShift-Ex.R’ failed + The error most likely occurred in: + + > ### Name: shift.dot.ggplot + > ### Title: Shifts of Allele Frequencies as Response to Climate Change + > ### Aliases: shift.dot.ggplot + > + > ### ** Examples + > + > + ... + Warning: Use of `freq.future$Allele.freq` is discouraged. + ℹ Use `Allele.freq` instead. + Warning: Use of `freq.future$Pop` is discouraged. + ℹ Use `Pop` instead. + Warning: Use of `freq.future$Freq.e2` is discouraged. + ℹ Use `Freq.e2` instead. + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +# alookr + +
+ +* Version: 0.3.9 +* GitHub: https://github.com/choonghyunryu/alookr +* Source code: https://github.com/cran/alookr +* Date/Publication: 2024-02-11 07:30:02 UTC +* Number of recursive dependencies: 169 + +Run `revdepcheck::cloud_details(, "alookr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘alookr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compare_plot + > ### Title: Comparison plot of train set and test set + > ### Aliases: compare_plot + > + > ### ** Examples + > + > library(dplyr) + ... + > sb %>% + + compare_plot() + Warning: `unite_()` was deprecated in tidyr 1.2.0. + ℹ Please use `unite()` instead. + ℹ The deprecated feature was likely used in the ggmosaic package. + Please report the issue at . + Error in make_title(..., self = self) : + unused arguments ("dataset class", "x") + Calls: %>% ... labels -> -> resolve_label -> + Execution halted + ``` + +# AlphaPart + +
+ +* Version: 0.9.8 +* GitHub: NA +* Source code: https://github.com/cran/AlphaPart +* Date/Publication: 2022-11-15 21:40:05 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "AlphaPart")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AlphaPart-Ex.R’ failed + The error most likely occurred in: + + > ### Name: print.plotSummaryAlphaPart + > ### Title: Print a plot generate by the function 'plotSummaryAlphaPart' + > ### Aliases: print.plotSummaryAlphaPart + > + > ### ** Examples + > + > ## Partition additive genetic values + ... + 1. ├─base::plot(...) + 2. └─AlphaPart:::plot.summaryAlphaPart(...) + 3. ├─directlabels::direct.label(p = p, method = method) + 4. └─directlabels::direct.label.ggplot(p = p, method = method) + 5. └─directlabels::geom_dl(...) + 6. └─ggplot2::layer(...) + 7. └─ggplot2:::validate_mapping(mapping, call_env) + 8. └─cli::cli_abort(msg, call = call) + 9. └─rlang::abort(...) + Execution halted + ``` + +# AmpliconDuo + +
+ +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/AmpliconDuo +* Date/Publication: 2020-05-25 22:20:02 UTC +* Number of recursive dependencies: 27 + +Run `revdepcheck::cloud_details(, "AmpliconDuo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AmpliconDuo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: AmpliconDuo-package + > ### Title: Statistical Analysis Of Amplicon Data Of The Same Sample To + > ### Identify Spurious Amplicons + > ### Aliases: AmpliconDuo-package AmpliconDuo + > ### Keywords: package + > + > ### ** Examples + ... + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. ├─rlang::exec(scale, !!!args) + 5. └─ggplot2 (local) ``(...) + 6. ├─ggplot2::discrete_scale(...) + 7. │ └─ggplot2::ggproto(...) + 8. │ └─rlang::list2(...) + 9. └─ggplot2:::pal_qualitative(type = type) + 10. └─ggplot2:::stop_input_type(type, "a character vector or list of character vectors") + 11. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) AmpliconDuo-package.Rd:37-39: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:40-42: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:43-46: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:47-49: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:50-52: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:53-55: Lost braces in \itemize; meant \describe ? + checkRd: (-1) AmpliconDuo-package.Rd:56-58: Lost braces in \itemize; meant \describe ? + ``` + +# AnalysisLin + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/AnalysisLin +* Date/Publication: 2024-01-30 00:10:10 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "AnalysisLin")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AnalysisLin-Ex.R’ failed + The error most likely occurred in: + + > ### Name: bar_plot + > ### Title: Bar Plots for Categorical Variables + > ### Aliases: bar_plot + > + > ### ** Examples + > + > data(iris) + > bar_plot(iris) + Error in pm[[2]] : subscript out of bounds + Calls: bar_plot ... plotly_build -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# AnanseSeurat + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/JGASmits/AnanseSeurat +* Source code: https://github.com/cran/AnanseSeurat +* Date/Publication: 2023-11-11 21:43:17 UTC +* Number of recursive dependencies: 205 + +Run `revdepcheck::cloud_details(, "AnanseSeurat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AnanseSeurat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Factor_Motif_Plot + > ### Title: Factor_Motif_Plot + > ### Aliases: Factor_Motif_Plot + > + > ### ** Examples + > + > sce_small <- readRDS(system.file("extdata","sce_small.Rds",package = 'AnanseSeurat')) + ... + Please report the issue at . + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the Seurat package. + Please report the issue at . + Error in `&.default`(plot, scale_color_gradientn(colors = cols, limits = c(min.feature.value, : + operations are possible only for numeric, logical or complex types + Calls: Factor_Motif_Plot ... suppressMessages -> withCallingHandlers -> Ops.S7_object -> NextMethod + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 1. └─AnanseSeurat::Factor_Motif_Plot(...) at test-Motif2TF_functions.R:23:3 + 2. └─Seurat::FeaturePlot(...) + 3. ├─base::suppressMessages(...) + 4. │ └─base::withCallingHandlers(...) + 5. ├─S7:::Ops.S7_object(...) + 6. └─base::NextMethod() + + [ FAIL 1 | WARN 23 | SKIP 0 | PASS 38 ] + Error: Test failures + Execution halted + ``` + +# andurinha + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/noemiallefs/andurinha +* Source code: https://github.com/cran/andurinha +* Date/Publication: 2020-08-13 08:40:02 UTC +* Number of recursive dependencies: 75 + +Run `revdepcheck::cloud_details(, "andurinha")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(andurinha) + > + > test_check("andurinha") + sample absMax + 1 A 0.465 + 2 B 0.402 + ... + ── Failure ('test_funtionsOutput.R:29:3'): plotPeaks return a ggplot objetc ──── + class(...) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test_funtionsOutput.R:32:3'): plotPeaks return a ggplot objetc ──── + class(...) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 43 ] + Error: Test failures + Execution halted + ``` + +# animbook + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/KrisanatA/animbook +* Source code: https://github.com/cran/animbook +* Date/Publication: 2023-12-05 17:50:07 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "animbook")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘animbook-Ex.R’ failed + The error most likely occurred in: + + > ### Name: anim_animate + > ### Title: Modified the ggplot object + > ### Aliases: anim_animate + > + > ### ** Examples + > + > animbook <- anim_prep(data = osiris, id = ID, values = sales, time = year, group = japan) + > + > plot <- wallaby_plot(animbook) + You can now use the animbook::anim_animate() function to + transform it into an animated object + > + > animate <- anim_animate(plot) + Error in plot$plot_env : object of type 'object' is not subsettable + Calls: anim_animate + Execution halted + ``` + +# ANN2 + +
+ +* Version: 2.3.4 +* GitHub: https://github.com/bflammers/ANN2 +* Source code: https://github.com/cran/ANN2 +* Date/Publication: 2020-12-01 10:00:02 UTC +* Number of recursive dependencies: 49 + +Run `revdepcheck::cloud_details(, "ANN2")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ANN2) + > + > # Only test if not on mac + > if (tolower(Sys.info()[["sysname"]]) != "darwin") { + + test_check("ANN2") + + } + ... + target is NULL, current is character + ── Failure ('test-plotting.R:71:3'): the compression_plot.ANN() function works correctly ── + `p_AE` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-plotting.R:77:3'): the compression_plot.ANN() function works correctly ── + p_AE$labels$colour not equal to "col". + target is NULL, current is character + + [ FAIL 9 | WARN 2 | SKIP 4 | PASS 139 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +* checking installed package size ... NOTE + ``` + installed size is 48.9Mb + sub-directories of 1Mb or more: + cereal 1.4Mb + libs 47.4Mb + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# anscombiser + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/paulnorthrop/anscombiser +* Source code: https://github.com/cran/anscombiser +* Date/Publication: 2022-10-02 23:30:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "anscombiser")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘anscombiser-Ex.R’ failed + The error most likely occurred in: + + > ### Name: anscombise_gif + > ### Title: Animation of several Anscombised datasets + > ### Aliases: anscombise_gif + > + > ### ** Examples + > + > # Animate some Anscombe-like datasets produced using input1 to input8 + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# APackOfTheClones + +
+ +* Version: 1.2.4 +* GitHub: https://github.com/Qile0317/APackOfTheClones +* Source code: https://github.com/cran/APackOfTheClones +* Date/Publication: 2024-11-18 22:30:02 UTC +* Number of recursive dependencies: 175 + +Run `revdepcheck::cloud_details(, "APackOfTheClones")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘APackOfTheClones-Ex.R’ failed + The error most likely occurred in: + + > ### Name: APOTCPlot + > ### Title: Various variations of visualizations of clonal expansion + > ### post-RunAPOTC + > ### Aliases: APOTCPlot + > + > ### ** Examples + > + ... + by .GlobalEnv when processing object ‘combined_pbmc’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘combined_pbmc’ + > + > combined_pbmc <- RunAPOTC( + + combined_pbmc, run_id = "run1", verbose = FALSE + + ) + > + > # plotting with default arguments will plot the latest "run1" + > clonal_packing_plot <- APOTCPlot(combined_pbmc) + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + 9. └─ggplot2::layer(...) + 10. └─ggplot2:::validate_mapping(mapping, call_env) + 11. └─cli::cli_abort(msg, call = call) + 12. └─rlang::abort(...) + + [ FAIL 9 | WARN 5 | SKIP 7 | PASS 235 ] + Deleting unused snapshots: + • APOTCPlot/add-default-theme-plot.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘APackOfTheClones-install.Rmd’ using rmarkdown + --- finished re-building ‘APackOfTheClones-install.Rmd’ + + --- re-building ‘APackOfTheClones-runs.Rmd’ using rmarkdown + + Quitting from APackOfTheClones-runs.Rmd:150-178 [apotcplot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + ... + Error: processing vignette 'APackOfTheClones.Rmd' failed with diagnostics: + Can't add `x[[i]]` to a object. + --- failed re-building ‘APackOfTheClones.Rmd’ + + SUMMARY: processing the following files failed: + ‘APackOfTheClones-runs.Rmd’ ‘APackOfTheClones-shared.Rmd’ + ‘APackOfTheClones-utils.Rmd’ ‘APackOfTheClones.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking contents of ‘data’ directory ... WARNING + ``` + Output for data("combined_pbmc", package = "APackOfTheClones"): + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘combined_pbmc’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘combined_pbmc’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘combined_pbmc’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘combined_pbmc’ + ``` + +* checking installed package size ... NOTE + ``` + installed size is 7.6Mb + sub-directories of 1Mb or more: + help 1.1Mb + libs 5.3Mb + ``` + +# APCtools + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/bauer-alex/APCtools +* Source code: https://github.com/cran/APCtools +* Date/Publication: 2023-01-13 23:30:02 UTC +* Number of recursive dependencies: 113 + +Run `revdepcheck::cloud_details(, "APCtools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘APCtools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_densityMatrix + > ### Title: Create a matrix of density plots + > ### Aliases: plot_densityMatrix + > + > ### ** Examples + > + > library(APCtools) + ... + 2.2.0 and is now defunct. + ℹ Please use the `rows` argument instead. + Backtrace: + ▆ + 1. └─APCtools::plot_densityMatrix(...) + 2. └─ggplot2::facet_grid(facets = facet_formula, switch = "y") + 3. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") + 4. └─lifecycle:::deprecate_stop0(msg) + 5. └─rlang::cnd_signal(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(APCtools) + > + > test_check("APCtools") + Loading required package: nlme + This is mgcv 1.9-1. For overview type 'help("mgcv-package")'. + Excluding 9565 missing observations of mainTrip_distance... + ... + ▆ + 1. └─APCtools::plot_densityMatrix(...) at test-plots_descriptive.R:148:3 + 2. └─ggplot2::facet_grid(facets = facet_formula, switch = "y") + 3. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") + 4. └─lifecycle:::deprecate_stop0(msg) + 5. └─rlang::cnd_signal(...) + + [ FAIL 3 | WARN 39 | SKIP 0 | PASS 69 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘main_functionality.Rmd’ using rmarkdown + ``` + +# aplot + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/YuLab-SMU/aplot +* Source code: https://github.com/cran/aplot +* Date/Publication: 2025-02-27 03:50:02 UTC +* Number of recursive dependencies: 48 + +Run `revdepcheck::cloud_details(, "aplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘aplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: xlim2 + > ### Title: xlim2 + > ### Aliases: xlim2 ylim2 + > + > ### ** Examples + > + > library(ggplot2) + > library(aplot) + > p1 <- ggplot(mtcars, aes(cyl)) + geom_bar() + > p2 <- ggplot(subset(mtcars, cyl != 4), aes(cyl)) + geom_bar() + > p2 + xlim2(p1) + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(gg)@layout`? + Execution halted + ``` + +# aplotExtra + +
+ +* Version: 0.0.3 +* GitHub: https://github.com/YuLab-SMU/aplotExtra +* Source code: https://github.com/cran/aplotExtra +* Date/Publication: 2024-12-17 08:30:13 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "aplotExtra")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘aplotExtra-Ex.R’ failed + The error most likely occurred in: + + > ### Name: upset_plot + > ### Title: upsetplot2 + > ### Aliases: upset_plot + > + > ### ** Examples + > + > list = list(A = sample(LETTERS, 20), + ... + + C = sample(LETTERS, 14), + + D = sample(LETTERS, 30, replace = TRUE)) + > upset_plot(list) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the aplotExtra package. + Please report the issue to the authors. + Error in as.aplot(.data) : input should be a 'gg' object. + Calls: upset_plot ... insert_lr -> as.aplot -> -> insert_tb -> as.aplot + Execution halted + ``` + +# apm + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/tl2624/apm +* Source code: https://github.com/cran/apm +* Date/Publication: 2025-03-10 16:50:17 UTC +* Number of recursive dependencies: 55 + +Run `revdepcheck::cloud_details(, "apm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘apm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: apm_pre + > ### Title: Fit validation models to pre-treatment data + > ### Aliases: apm_pre summary.apm_pre_fits + > + > ### ** Examples + > + > data("ptpdata") + ... + objects. + Backtrace: + ▆ + 1. ├─base::plot(fits, type = "error") + 2. └─apm:::plot.apm_pre_fits(fits, type = "error") + 3. └─ggh4x::strip_themed(background_x = elem_list_rect(fill = strip_cols)) + 4. └─ggh4x:::validate_element_list(background_x, "element_rect") + 5. └─cli::cli_abort("The {.arg {argname}} argument should be a list of {.cls {prototype}} \\\n objects.") + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘apm.Rmd’ using rmarkdown_notangle + ``` + +# appeears + +
+ +* Version: 1.1 +* GitHub: https://github.com/bluegreen-labs/appeears +* Source code: https://github.com/cran/appeears +* Date/Publication: 2023-09-15 15:02:06 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "appeears")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘appeears_vignette.Rmd’ using rmarkdown + ``` + +# applicable + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/tidymodels/applicable +* Source code: https://github.com/cran/applicable +* Date/Publication: 2024-04-25 00:00:04 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "applicable")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(applicable) + Loading required package: ggplot2 + > + > test_check("applicable") + Loading required package: dplyr + ... + `expected` is a character vector ('percentile') + ── Failure ('test-plot.R:36:3'): output of autoplot.apd_pca is correct when options=distance are provided ── + ad_plot$labels$y (`actual`) not equal to "percentile" (`expected`). + + `actual` is NULL + `expected` is a character vector ('percentile') + + [ FAIL 3 | WARN 0 | SKIP 22 | PASS 90 ] + Error: Test failures + Execution halted + ``` + +# AQEval + +
+ +* Version: 0.6.0 +* GitHub: https://github.com/karlropkins/AQEval +* Source code: https://github.com/cran/AQEval +* Date/Publication: 2025-01-09 19:20:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "AQEval")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘AQEval-Ex.R’ failed + The error most likely occurred in: + + > ### Name: isolate.signal + > ### Title: isolateContribution + > ### Aliases: isolate.signal isolateContribution + > + > ### ** Examples + > + > #fitting a simple deseasonalisation, deweathering + ... + 19. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 20. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 21. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 22. │ └─base::withCallingHandlers(...) + 23. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 24. ├─S7::S7_dispatch() + 25. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 26. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 27. └─rlang::abort(...) + Execution halted + ``` + +# arena2r + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/pedroliman/arena2r +* Source code: https://github.com/cran/arena2r +* Date/Publication: 2018-10-19 15:30:03 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "arena2r")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(arena2r) + > + > test_check("arena2r") + [ FAIL 3 | WARN 6 | SKIP 0 | PASS 4 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('tests_arena2r.R:31:3'): plots_sao_gerados ───────────────────────── + `plot_conf` has type 'object', not 'list'. + ── Failure ('tests_arena2r.R:32:3'): plots_sao_gerados ───────────────────────── + `plot_scat` has type 'object', not 'list'. + ── Failure ('tests_arena2r.R:33:3'): plots_sao_gerados ───────────────────────── + `plot_box` has type 'object', not 'list'. + + [ FAIL 3 | WARN 6 | SKIP 0 | PASS 4 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘purrr’ ‘shinyBS’ ‘shinydashboard’ ‘shinyjs’ + All declared Imports should be used. + ``` + +# arima2 + +
+ +* Version: 3.3.0 +* GitHub: https://github.com/jeswheel/arima2 +* Source code: https://github.com/cran/arima2 +* Date/Publication: 2024-08-19 14:20:02 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "arima2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘arima2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.Arima2 + > ### Title: Plot 'Arima2' object + > ### Aliases: plot.Arima2 + > + > ### ** Examples + > + > plot(arima(lh, order = c(1,0,1))) + Error: Can't find property @i + Execution halted + ``` + +# arulesViz + +
+ +* Version: 1.5.3 +* GitHub: https://github.com/mhahsler/arulesViz +* Source code: https://github.com/cran/arulesViz +* Date/Publication: 2024-04-26 09:20:02 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "arulesViz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘arulesViz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_arulesViz + > ### Title: Visualize Association Rules and Itemsets + > ### Aliases: plot_arulesViz plot.rules plot plot.itemsets + > ### plot.grouped_matrix plotly guide_edge_colourbar + > ### Keywords: hplot + > + > ### ** Examples + ... + 24. └─vctrs::vec_default_cast(...) + 25. ├─base::withRestarts(...) + 26. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 27. │ └─base (local) doWithOneRestart(return(expr), restart) + 28. └─vctrs::stop_incompatible_cast(...) + 29. └─vctrs::stop_incompatible_type(...) + 30. └─vctrs:::stop_incompatible(...) + 31. └─vctrs:::stop_vctrs(...) + 32. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘arulesViz.Rnw’ using Sweave + Loading required package: arules + Loading required package: Matrix + + Attaching package: ‘arules’ + + The following objects are masked from ‘package:base’: + + ... + To reduce overplotting, jitter is added! Use jitter = 0 to prevent jitter. + Error: processing vignette 'arulesViz.Rnw' failed with diagnostics: + Can't convert to . + --- failed re-building ‘arulesViz.Rnw’ + + SUMMARY: processing the following file failed: + ‘arulesViz.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ARUtools + +
+ +* Version: 0.7.2 +* GitHub: https://github.com/ARUtools/ARUtools +* Source code: https://github.com/cran/ARUtools +* Date/Publication: 2025-03-19 19:20:05 UTC +* Number of recursive dependencies: 141 + +Run `revdepcheck::cloud_details(, "ARUtools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ARUtools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: calc_selection_weights + > ### Title: Calculate Selection Weights + > ### Aliases: calc_selection_weights + > + > ### ** Examples + > + > s <- clean_site_index(example_sites_clean, + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ARUtools) + > + > test_check("ARUtools") + sh: 1: sox: not found + Extracting Dates and Times... + ! Omitted 1 extra, non-json/GPS files + ... + 26. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 27. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 5 | PASS 567 ] + Deleting unused snapshots: + • 08_selections/sim-selection-weights1.svg + • 08_selections/sim-selection-weights2.svg + • 08_selections/sim-selection-weights3.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ARUtools.Rmd’ using rmarkdown + --- finished re-building ‘ARUtools.Rmd’ + + --- re-building ‘Misc.Rmd’ using rmarkdown + --- finished re-building ‘Misc.Rmd’ + + --- re-building ‘SubSample.Rmd’ using rmarkdown + + Quitting from SubSample.Rmd:115-124 [unnamed-chunk-5] + ... + --- finished re-building ‘spatial.Rmd’ + + --- re-building ‘timezones.Rmd’ using rmarkdown + --- finished re-building ‘timezones.Rmd’ + + SUMMARY: processing the following files failed: + ‘SubSample.Rmd’ ‘multisampling.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ASRgenomics + +
+ +* Version: 1.1.4 +* GitHub: NA +* Source code: https://github.com/cran/ASRgenomics +* Date/Publication: 2024-01-29 21:20:02 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "ASRgenomics")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + `expected`: "gg" "ggplot" + ── Failure ('test-qc.R:58:3'): filters work ──────────────────────────────────── + class(M_filter$plot.maf) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 5 | WARN 7 | SKIP 0 | PASS 258 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.9Mb + sub-directories of 1Mb or more: + data 8.5Mb + ``` + +# assignPOP + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/alexkychen/assignPOP +* Source code: https://github.com/cran/assignPOP +* Date/Publication: 2024-03-13 08:30:02 UTC +* Number of recursive dependencies: 139 + +Run `revdepcheck::cloud_details(, "assignPOP")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(assignPOP) + > + > test_check("assignPOP") + + Correct assignment rates were estimated!! + A total of 3 assignment tests for 3 pops. + ... + ── Failure ('test_accuracy.R:8:3'): Calculate assignment accuracy for Monte-Carlo results ── + `plot` has type 'object', not 'list'. + ── Failure ('test_accuracy.R:18:3'): Calculate assignment accuracy for K-fold results ── + `plot` has type 'object', not 'list'. + ── Failure ('test_membership.R:5:3'): Plot membership probability ────────────── + `plot` has type 'object', not 'list'. + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 39 ] + Error: Test failures + Execution halted + ``` + +# atime + +
+ +* Version: 2025.4.1 +* GitHub: https://github.com/tdhock/atime +* Source code: https://github.com/cran/atime +* Date/Publication: 2025-04-09 07:30:39 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "atime")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘atime-Ex.R’ failed + The error most likely occurred in: + + > ### Name: atime + > ### Title: Asymptotic timing + > ### Aliases: atime + > + > ### ** Examples + > + > + ... + 1. ├─base::plot(atime_result_string) + 2. └─atime:::plot.atime(atime_result_string) + 3. ├─directlabels::direct.label(gg, "right.polygons") + 4. └─directlabels::direct.label.ggplot(gg, "right.polygons") + 5. └─directlabels::geom_dl(...) + 6. └─ggplot2::layer(...) + 7. └─ggplot2:::validate_mapping(mapping, call_env) + 8. └─cli::cli_abort(msg, call = call) + 9. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Custom_Plots.Rmd’ using knitr + ``` + +# auditor + +
+ +* Version: 1.3.5 +* GitHub: https://github.com/ModelOriented/auditor +* Source code: https://github.com/cran/auditor +* Date/Publication: 2023-10-30 15:40:07 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "auditor")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(auditor) + > + > test_check("auditor") + 1 out of 100 + 2 out of 100 + 3 out of 100 + ... + ── Failure ('test_plotsR.R:137:3'): plot type is not provided ────────────────── + plot(cd_lm) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_plotsR.R:138:3'): plot type is not provided ────────────────── + plot(mp_lm) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_plotsR.R:139:3'): plot type is not provided ────────────────── + plot(mr_glm) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 67 | WARN 0 | SKIP 2 | PASS 112 ] + Error: Test failures + Execution halted + ``` + +# augmentedRCBD + +
+ +* Version: 0.1.7 +* GitHub: https://github.com/aravind-j/augmentedRCBD +* Source code: https://github.com/cran/augmentedRCBD +* Date/Publication: 2023-08-19 00:12:38 UTC +* Number of recursive dependencies: 113 + +Run `revdepcheck::cloud_details(, "augmentedRCBD")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘Data_Analysis_with_augmentedRCBD.Rmd’ using rmarkdown_notangle + trying URL 'https://www.r-project.org/logo/Rlogo.png' + Content type 'image/png' length 48148 bytes (47 KB) + ================================================== + downloaded 47 KB + + trying URL 'https://raw.githubusercontent.com/aravind-j/augmentedRCBD/master/vignettes/rbase.png' + Content type 'image/png' length 57299 bytes (55 KB) + ================================================== + ... + + Error: processing vignette 'Data_Analysis_with_augmentedRCBD.Rmd' failed with diagnostics: + LaTeX failed to compile /tmp/workdir/augmentedRCBD/new/augmentedRCBD.Rcheck/vign_test/augmentedRCBD/vignettes/Data_Analysis_with_augmentedRCBD.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Data_Analysis_with_augmentedRCBD.log for more info. + --- failed re-building ‘Data_Analysis_with_augmentedRCBD.Rmd’ + + SUMMARY: processing the following file failed: + ‘Data_Analysis_with_augmentedRCBD.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Data_Analysis_with_augmentedRCBD.Rmd’ using rmarkdown_notangle + trying URL 'https://www.r-project.org/logo/Rlogo.png' + Content type 'image/png' length 48148 bytes (47 KB) + ================================================== + downloaded 47 KB + + trying URL 'https://raw.githubusercontent.com/aravind-j/augmentedRCBD/master/vignettes/rbase.png' + + Quitting from Data_Analysis_with_augmentedRCBD.Rmd:137-146 [unnamed-chunk-4] + ... + + Error: processing vignette 'Data_Analysis_with_augmentedRCBD.Rmd' failed with diagnostics: + cannot open URL 'https://raw.githubusercontent.com/aravind-j/augmentedRCBD/master/vignettes/rbase.png' + --- failed re-building ‘Data_Analysis_with_augmentedRCBD.Rmd’ + + SUMMARY: processing the following file failed: + ‘Data_Analysis_with_augmentedRCBD.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# aum + +
+ +* Version: 2024.6.19 +* GitHub: https://github.com/tdhock/aum +* Source code: https://github.com/cran/aum +* Date/Publication: 2024-06-20 21:20:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "aum")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘speed-comparison.Rmd’ using knitr + + Quitting from speed-comparison.Rmd:21-44 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'speed-comparison.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘speed-comparison.Rmd’ + + SUMMARY: processing the following file failed: + ‘speed-comparison.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# autocogs + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/schloerke/autocogs +* Source code: https://github.com/cran/autocogs +* Date/Publication: 2021-05-29 17:00:05 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "autocogs")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(autocogs) + > + > test_check("autocogs") + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 8. └─autocogs (local) FUN(X[[i]], ...) + 9. └─base::lapply(...) + 10. └─autocogs (local) FUN(X[[i]], ...) + 11. ├─base::do.call(fn, args) + 12. └─autocogs (local) ``(...) + 13. └─base::do.call(loess, c(core_params, params$method.args)) + + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘MASS’ ‘broom’ ‘diptest’ ‘ggplot2’ ‘hexbin’ ‘moments’ + All declared Imports should be used. + ``` + +# autoplotly + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/terrytangyuan/autoplotly +* Source code: https://github.com/cran/autoplotly +* Date/Publication: 2021-04-18 06:50:11 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "autoplotly")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘autoplotly-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplotly + > ### Title: Automatic Visualization of Popular Statistical Results Using + > ### 'plotly.js' and 'ggplot2' + > ### Aliases: autoplotly + > + > ### ** Examples + > + ... + > p <- autoplotly(prcomp(iris[c(1, 2, 3, 4)]), data = iris, + + colour = 'Species', label = TRUE, label.size = 3, frame = TRUE) + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the ggfortify package. + Please report the issue at . + Error in pm[[2]] : subscript out of bounds + Calls: autoplotly ... autoplotly.default -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(autoplotly) + > + > test_check("autoplotly") + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ▆ + 1. ├─autoplotly::autoplotly(...) at test_all.R:26:3 + 2. └─autoplotly:::autoplotly.default(...) + 3. ├─plotly::ggplotly(...) + 4. └─plotly:::ggplotly.ggplot(...) + 5. └─plotly::gg2list(...) + + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ] + Error: Test failures + Execution halted + ``` + +# autoReg + +
+ +* Version: 0.3.3 +* GitHub: https://github.com/cardiomoon/autoReg +* Source code: https://github.com/cran/autoReg +* Date/Publication: 2023-11-14 05:53:27 UTC +* Number of recursive dependencies: 217 + +Run `revdepcheck::cloud_details(, "autoReg")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘autoReg-Ex.R’ failed + The error most likely occurred in: + + > ### Name: modelPlot + > ### Title: Draw coefficients/odds ratio/hazard ratio plot + > ### Aliases: modelPlot + > + > ### ** Examples + > + > fit=lm(mpg~wt*hp+am,data=mtcars) + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Automatic_Regression_Modeling.Rmd’ using rmarkdown + + Quitting from Automatic_Regression_Modeling.Rmd:141-143 [unnamed-chunk-15] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Automatic_Regression_Modeling.Rmd' failed with diagnostics: + Can't add `x$tab2` to a object. + ... + Error: processing vignette 'Survival.Rmd' failed with diagnostics: + Can't add `ggtheme` to a object. + --- failed re-building ‘Survival.Rmd’ + + SUMMARY: processing the following files failed: + ‘Automatic_Regression_Modeling.Rmd’ ‘Bootstrap_Prediction.Rmd’ + ‘Getting_started.Rmd’ ‘Survival.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# autostats + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/Harrison4192/autostats +* Source code: https://github.com/cran/autostats +* Date/Publication: 2024-06-04 09:44:44 UTC +* Number of recursive dependencies: 200 + +Run `revdepcheck::cloud_details(, "autostats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘autostats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: auto_variable_contributions + > ### Title: Plot Variable Contributions + > ### Aliases: auto_variable_contributions + > + > ### ** Examples + > + > + ... + 2. autostats::auto_variable_contributions(., tidy_formula(., target = Petal.Width)) + 5. patchwork::wrap_plots(pcf, plm) + 6. base::Reduce(`+`, plots, init = plot_filler()) + 7. S7:::Ops.S7_object(init, x[[i]]) + 12. base_ops[[.Generic]](e1, e2) + 14. ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 15. ggplot2:::add_ggplot(e1, e2, e2name) + 16. ggplot2::ggplot_add(object, p, objectname) + 18. ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘autostats.Rmd’ using rmarkdown + + Quitting from autostats.Rmd:40-43 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'autostats.Rmd' failed with diagnostics: + Can't add `x[[i]]` to a object. + --- failed re-building ‘autostats.Rmd’ + + --- re-building ‘tidyXgboost.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘Ckmeans.1d.dp’ ‘broom.mixed’ ‘igraph’ + All declared Imports should be used. + ``` + +# backShift + +
+ +* Version: 0.1.4.3 +* GitHub: https://github.com/christinaheinze/backShift +* Source code: https://github.com/cran/backShift +* Date/Publication: 2020-05-06 11:30:03 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "backShift")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘exampleBackShift.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘InvariantCausalPrediction’, ‘CompareCausalNetworks’ + ``` + +# baggr + +
+ +* Version: 0.7.8 +* GitHub: https://github.com/wwiecek/baggr +* Source code: https://github.com/cran/baggr +* Date/Publication: 2024-02-12 18:20:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "baggr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘baggr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: baggr_plot + > ### Title: Plotting method in baggr package + > ### Aliases: baggr_plot + > + > ### ** Examples + > + > fit <- baggr(schools, pooling = "none") + Automatically chose Rubin model with aggregate data based on input data. + Setting prior for mean in each group using 10 times the max effect : + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(baggr) + Loading required package: Rcpp + This is baggr; see vignette('baggr') for tutorial, ?baggr for basic help. + For execution on a local, multicore CPU with excess RAM call: + options(mc.cores = parallel::detectCores()) + > + ... + ── Failure ('test_rubin.R:328:3'): baggr_compare basic cases work with Rubin ─── + `p2` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_rubin.R:397:3'): baggr comparison method works for Rubin model ── + plot(comp_rbpl) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_rubin.R:399:3'): baggr comparison method works for Rubin model ── + plot(comp_rbpr) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 41 | WARN 5 | SKIP 6 | PASS 479 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 190.9Mb + sub-directories of 1Mb or more: + libs 189.1Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# bakeoff + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/apreshill/bakeoff +* Source code: https://github.com/cran/bakeoff +* Date/Publication: 2022-10-21 15:25:10 UTC +* Number of recursive dependencies: 31 + +Run `revdepcheck::cloud_details(, "bakeoff")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘bakeoff-Ex.R’ failed + The error most likely occurred in: + + > ### Name: bakeoff_palette + > ### Title: A *bakeoff* palette generator + > ### Aliases: bakeoff_palette + > + > ### ** Examples + > + > bakeoff_palette("showstopper") + ... + 19. └─vctrs (local) ``() + 20. └─vctrs::vec_default_ptype2(...) + 21. ├─base::withRestarts(...) + 22. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 23. │ └─base (local) doWithOneRestart(return(expr), restart) + 24. └─vctrs::stop_incompatible_type(...) + 25. └─vctrs:::stop_incompatible(...) + 26. └─vctrs:::stop_vctrs(...) + 27. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 260 marked UTF-8 strings + ``` + +# bartMan + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/bartMan +* Date/Publication: 2024-07-24 12:10:02 UTC +* Number of recursive dependencies: 134 + +Run `revdepcheck::cloud_details(, "bartMan")` for more info + +
+ +## Newly broken + +* checking whether package ‘bartMan’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bartMan’ ... +** package ‘bartMan’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in eval(exprs[i], envir) : object 'justify_grobs' not found +Error: unable to load R code in package ‘bartMan’ +Execution halted +ERROR: lazy loading failed for package ‘bartMan’ +* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’ + + +``` +### CRAN + +``` +* installing *source* package ‘bartMan’ ... +** package ‘bartMan’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (bartMan) + + +``` +# BAS + +
+ +* Version: 1.7.5 +* GitHub: https://github.com/merliseclyde/BAS +* Source code: https://github.com/cran/BAS +* Date/Publication: 2024-11-28 11:50:02 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "BAS")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘BAS-vignette.Rmd’ using rmarkdown + ``` + +# BaseSet + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/ropensci/BaseSet +* Source code: https://github.com/cran/BaseSet +* Date/Publication: 2025-02-17 20:10:11 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "BaseSet")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘BaseSet.Rmd’ using rmarkdown + --- finished re-building ‘BaseSet.Rmd’ + + --- re-building ‘advanced.Rmd’ using rmarkdown + + Quitting from advanced.Rmd:72-91 [evidence_ontology] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `as.vector()`: + ... + --- failed re-building ‘advanced.Rmd’ + + --- re-building ‘fuzzy.Rmd’ using rmarkdown + --- finished re-building ‘fuzzy.Rmd’ + + SUMMARY: processing the following file failed: + ‘advanced.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# BasketballAnalyzeR + +
+ +* Version: 0.8.0 +* GitHub: https://github.com/sndmrc/BasketballAnalyzeR +* Source code: https://github.com/cran/BasketballAnalyzeR +* Date/Publication: 2025-04-18 03:40:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "BasketballAnalyzeR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BasketballAnalyzeR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: assistnet + > ### Title: Investigates the network of assists-shots in a team + > ### Aliases: assistnet + > + > ### ** Examples + > + > PbP <- PbPmanipulation(PbP.BDB) + ... + > PbP.GSW <- subset(PbP, team=="GSW") + > out <- assistnet(PbP.GSW) + > plot(out) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the BasketballAnalyzeR package. + Please report the issue at + . + Error: C stack usage 9962244 is too close to the limit + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.0Mb + sub-directories of 1Mb or more: + data 6.5Mb + ``` + +# bayefdr + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/VallejosGroup/bayefdr +* Source code: https://github.com/cran/bayefdr +* Date/Publication: 2022-10-26 19:35:06 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "bayefdr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘bayefdr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: traceplot + > ### Title: Trace, marginal density histogram, and autocorrelation plot of + > ### MCMC draws. + > ### Aliases: traceplot + > + > ### ** Examples + > + > x <- rnorm(1000) + > traceplot(x) + Error: Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(bayefdr) + > + > test_check("bayefdr") + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 12 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. └─bayefdr::traceplot(rnorm(1000)) + 5. └─ggExtra::ggMarginal(p1, type = "histogram", margins = "y") + 6. ├─scatPbuilt$plot + 7. └─S7:::`$.S7_object`(scatPbuilt, "plot") + + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 12 ] + Error: Test failures + Execution halted + ``` + +# bayes4psy + +
+ +* Version: 1.2.12 +* GitHub: https://github.com/bstatcomp/bayes4psy +* Source code: https://github.com/cran/bayes4psy +* Date/Publication: 2023-09-29 13:10:06 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "bayes4psy")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘adaptation_level.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 146.2Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 1.9Mb + libs 142.1Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# bayesAB + +
+ +* Version: 1.1.3 +* GitHub: https://github.com/FrankPortman/bayesAB +* Source code: https://github.com/cran/bayesAB +* Date/Publication: 2021-06-25 00:50:02 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "bayesAB")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘bayesAB-Ex.R’ failed + The error most likely occurred in: + + > ### Name: bayesTest + > ### Title: Fit a Bayesian model to A/B test data. + > ### Aliases: bayesTest + > + > ### ** Examples + > + > A_binom <- rbinom(100, 1, .5) + ... + > plot(AB1) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the bayesAB package. + Please report the issue at . + Warning: `qplot()` was deprecated in ggplot2 3.4.0. + ℹ The deprecated feature was likely used in the bayesAB package. + Please report the issue at . + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(p)@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(bayesAB) + > + > test_check("bayesAB") + [ FAIL 2 | WARN 4 | SKIP 0 | PASS 124 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 10. └─bayesAB:::plot.bayesTest(x) + 11. └─bayesAB:::plotSamples(x, percentLift) + 12. ├─base::do.call(fun, call) + 13. └─bayesAB (local) ``(A = ``, B = ``, name = "Mu", percentLift = 0) + 14. ├─ggplot2::ggplot_build(p)$layout + 15. └─S7:::`$.S7_object`(ggplot2::ggplot_build(p), "layout") + + [ FAIL 2 | WARN 4 | SKIP 0 | PASS 124 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) plotDistributions.Rd:32: Lost braces + 32 | plot{...} functions are generated programmatically so the function calls in + | ^ + ``` + +# bayesassurance + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/jpan928/bayesassurance_rpackage +* Source code: https://github.com/cran/bayesassurance +* Date/Publication: 2022-06-17 10:40:17 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "bayesassurance")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(bayesassurance) + > + > test_check("bayesassurance") + [1] 20 10 + [1] 30 10 + [1] 40 10 + ... + Error in `out$plot$labels`: object of type 'object' is not subsettable + Backtrace: + ▆ + 1. └─testthat::expect_identical(out$plot$labels$y, "Power/Assurance") at test-pwr_curves.R:114:3 + 2. └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. └─rlang::eval_bare(expr, quo_get_env(quo)) + + [ FAIL 15 | WARN 92 | SKIP 0 | PASS 125 ] + Error: Test failures + Execution halted + ``` + +# BayesCVI + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/BayesCVI +* Date/Publication: 2024-09-04 15:50:02 UTC +* Number of recursive dependencies: 31 + +Run `revdepcheck::cloud_details(, "BayesCVI")` for more info + +
+ +## Newly broken + +* checking whether package ‘BayesCVI’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘BayesCVI’ + See ‘/tmp/workdir/BayesCVI/new/BayesCVI.Rcheck/00install.out’ for details. + ``` + +# BayesERtools + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/BayesERtools +* Date/Publication: 2025-02-12 11:40:22 UTC +* Number of recursive dependencies: 216 + +Run `revdepcheck::cloud_details(, "BayesERtools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 24. └─ggplot2:::add_ggplot(e1, e2, e2name) + 25. └─ggplot2::ggplot_add(object, p, objectname) + 26. ├─S7::S7_dispatch() + 27. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 28. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 29. └─rlang::abort(...) + + [ FAIL 9 | WARN 3 | SKIP 0 | PASS 140 ] + Error: Test failures + Execution halted + ``` + +# BayesianFactorZoo + +
+ +* Version: 0.0.0.3 +* GitHub: NA +* Source code: https://github.com/cran/BayesianFactorZoo +* Date/Publication: 2024-10-04 09:30:08 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "BayesianFactorZoo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BayesianFactorZoo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: BayesianFM + > ### Title: Bayesian Fama-MacBeth + > ### Aliases: BayesianFM + > + > ### ** Examples + > + > + ... + + theme(legend.position="bottom")+ + + theme(text = element_text(size = 26))+ + + xlab(bquote("Risk premium ("~lambda[strong]~")")) + + + ylab("Density" ) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +# BayesianPlatformDesignTimeTrend + +
+ +* Version: 1.2.3 +* GitHub: https://github.com/ZXW834/BayesianPlatformDesignTimeTrend +* Source code: https://github.com/cran/BayesianPlatformDesignTimeTrend +* Date/Publication: 2023-12-07 11:00:02 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "BayesianPlatformDesignTimeTrend")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘MAMS-CutoffScreening-GP-Asymmetric-tutorial.Rmd’ using rmarkdown + + Quitting from MAMS-CutoffScreening-GP-Asymmetric-tutorial.Rmd:169-251 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `ggplot_build(Contour.tIE)@data`? + --- + Backtrace: + ... + ▆ + 1. ├─ggplot_build(Contour.tIE)$data + 2. └─S7:::`$.S7_object`(ggplot_build(Contour.tIE), data) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'MAMS-CutoffScreening-GP-Asymmetric-tutorial.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `ggplot_build(Contour.tIE)@data`? + --- failed re-building ‘MAMS-CutoffScreening-GP-Asymmetric-tutorial.Rmd’ + + --- re-building ‘MAMS-CutoffScreening-GP-Symmetric-tutorial.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 115.2Mb + sub-directories of 1Mb or more: + data 3.5Mb + help 1.9Mb + libs 108.6Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# BayesianReasoning + +
+ +* Version: 0.4.2 +* GitHub: https://github.com/gorkang/BayesianReasoning +* Source code: https://github.com/cran/BayesianReasoning +* Date/Publication: 2023-11-14 11:33:20 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "BayesianReasoning")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(BayesianReasoning) + > + > test_check("BayesianReasoning") + + Plot created in: ./FP_10_sens_100_screening_1667_diagnostic_44.png + + ... + `names(expected)` is absent + ── Failure ('test-PPV_heatmap.R:1097:3'): Plot with line overlay ─────────────── + vapply(p$result$layers, function(x) class(x$geom)[1], "") (`actual`) not identical to c("GeomTile", "GeomSegment", "GeomPoint", "GeomMarkRect") (`expected`). + + `names(actual)` is a character vector ('geom_tile', 'annotate', 'annotate...3', 'geom_mark_rect') + `names(expected)` is absent + + [ FAIL 10 | WARN 16 | SKIP 4 | PASS 108 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘PPV_NPV.Rmd’ using rmarkdown + ``` + +# BayesMallows + +
+ +* Version: 2.2.3 +* GitHub: https://github.com/ocbe-uio/BayesMallows +* Source code: https://github.com/cran/BayesMallows +* Date/Publication: 2025-01-14 11:30:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "BayesMallows")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + `expected` is a character vector ('interaction(chain, cluster)') + ── Failure ('test-assess_convergence.R:217:3'): assess_convergence.BayesMallowsMixtures works ── + p$labels$colour (`actual`) not equal to "cluster" (`expected`). + + `actual` is NULL + `expected` is a character vector ('cluster') + + [ FAIL 10 | WARN 0 | SKIP 10 | PASS 363 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 23.8Mb + sub-directories of 1Mb or more: + doc 2.7Mb + libs 20.2Mb + ``` + +# BayesMultiMode + +
+ +* Version: 0.7.3 +* GitHub: https://github.com/paullabonne/BayesMultiMode +* Source code: https://github.com/cran/BayesMultiMode +* Date/Publication: 2024-10-31 15:30:06 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "BayesMultiMode")` for more info + +
+ +## Newly broken + +* checking whether package ‘BayesMultiMode’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/BayesMultiMode/new/BayesMultiMode.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.4Mb + sub-directories of 1Mb or more: + help 6.1Mb + ``` + +# bayesplot + +
+ +* Version: 1.12.0 +* GitHub: https://github.com/stan-dev/bayesplot +* Source code: https://github.com/cran/bayesplot +* Date/Publication: 2025-04-10 10:10:06 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "bayesplot")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(bayesplot) + This is bayesplot version 1.12.0 + - Online documentation and vignettes at mc-stan.org/bayesplot + - bayesplot theme set to bayesplot::theme_default() + * Does _not_ affect other ggplot2 plots + * See ?bayesplot_theme_set for details on theme setting + ... + ── Error ('test-ppc-discrete.R:28:3'): freq argument to ppc_bars works ───────── + Error: Can't get S7 properties with `$`. Did you mean `p_freq@data`? + Backtrace: + ▆ + 1. ├─p_freq$data at test-ppc-discrete.R:28:3 + 2. └─S7:::`$.S7_object`(p_freq, data) at test-ppc-discrete.R:28:3 + + [ FAIL 8 | WARN 2 | SKIP 74 | PASS 1017 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.2Mb + sub-directories of 1Mb or more: + R 5.0Mb + doc 3.5Mb + ``` + +# bayespm + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/bayespm +* Date/Publication: 2023-09-10 22:20:05 UTC +* Number of recursive dependencies: 31 + +Run `revdepcheck::cloud_details(, "bayespm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘bayespm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: norm_mean2_PRC + > ### Title: PRC for Normal data with unknown parameters (mean) + > ### Aliases: norm_mean2_PRC + > + > ### ** Examples + > + > + ... + > M0F <- 31.8 + > LF <- 1/2 + > AF <- 2 + > BF <- 2.1^2 + > + > norm_mean2_PRC( data = CD, historical_data = HD, alpha_0 = 1/n0, mu0 = M0F, + + l0 = LF, a0 = AF, b0 = BF, h = 3.749, two.sided = TRUE ) + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +# bayestestR + +
+ +* Version: 0.15.3 +* GitHub: https://github.com/easystats/bayestestR +* Source code: https://github.com/cran/bayestestR +* Date/Publication: 2025-04-28 13:00:14 UTC +* Number of recursive dependencies: 197 + +Run `revdepcheck::cloud_details(, "bayestestR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘bayestestR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: bayesfactor_restricted + > ### Title: Bayes Factors (BF) for Order Restricted Models + > ### Aliases: bayesfactor_restricted bf_restricted + > ### bayesfactor_restricted.stanreg bayesfactor_restricted.brmsfit + > ### bayesfactor_restricted.blavaan bayesfactor_restricted.emmGrid + > ### bayesfactor_restricted.data.frame as.logical.bayesfactor_restricted + > + ... + + ) + > + > + > (b <- bayesfactor_restricted(posterior, hypothesis = hyps, prior = prior)) + Bayes Factor (Order-Restriction) + + Hypothesis P(Prior) P(Posterior) BF + A > B & B > C 0.16 0.23 1.39 + A > B & A > C 0.36 0.59 1.61 + C > A 0.46 0.34 0.742 + ``` + +## In both + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(bayestestR) + > + > test_check("bayestestR") + Starting 2 test processes + [ FAIL 2 | WARN 0 | SKIP 80 | PASS 225 ] + + ... + 14. └─brms:::eval2(call, envir = args, enclos = envir) + 15. └─base::eval(expr, envir, ...) + 16. └─base::eval(expr, envir, ...) + 17. └─rstan (local) .fun(model_code = .x1) + 18. └─rstan:::cxxfunctionplus(...) + 19. └─base::sink(type = "output") + + [ FAIL 2 | WARN 0 | SKIP 80 | PASS 225 ] + Error: Test failures + Execution halted + ``` + +# BayesTools + +
+ +* Version: 0.2.18 +* GitHub: https://github.com/FBartos/BayesTools +* Source code: https://github.com/cran/BayesTools +* Date/Publication: 2025-01-14 17:10:06 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "BayesTools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BayesTools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.prior + > ### Title: Plots a prior object + > ### Aliases: plot.prior + > + > ### ** Examples + > + > # create some prior distributions + ... + 9. │ └─ggplot2 (local) labels(..., self = self) + 10. └─self$resolve_label(self$panel_scales_x[[1]], labels) + 11. └─ggplot2 (local) resolve_label(..., self = self) + 12. └─scale$make_title(prim_guide, prim_scale, prim_label) + 13. └─ggplot2 (local) make_title(..., self = self) + 14. └─ggplot2:::allow_lambda(scale_title) + 15. └─rlang::as_function(x) + 16. └─rlang:::abort_coercion(...) + 17. └─rlang::abort(msg, call = call) + Execution halted + ``` + +# BCClong + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/BCClong +* Date/Publication: 2024-06-24 00:00:02 UTC +* Number of recursive dependencies: 148 + +Run `revdepcheck::cloud_details(, "BCClong")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BCClong-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.BCC + > ### Title: Generic plot method for BCC objects + > ### Aliases: plot.BCC + > + > ### ** Examples + > + > # get data from the package + ... + 23. └─vctrs (local) ``() + 24. └─vctrs::vec_default_ptype2(...) + 25. ├─base::withRestarts(...) + 26. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 27. │ └─base (local) doWithOneRestart(return(expr), restart) + 28. └─vctrs::stop_incompatible_type(...) + 29. └─vctrs:::stop_incompatible(...) + 30. └─vctrs:::stop_vctrs(...) + 31. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.4Mb + sub-directories of 1Mb or more: + data 3.3Mb + doc 1.2Mb + libs 6.8Mb + ``` + +# BCEA + +
+ +* Version: 2.4.7 +* GitHub: https://github.com/n8thangreen/BCEA +* Source code: https://github.com/cran/BCEA +* Date/Publication: 2025-01-14 12:30:08 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "BCEA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BCEA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: eib.plot.bcea + > ### Title: Expected Incremental Benefit (EIB) Plot + > ### Aliases: eib.plot.bcea eib.plot + > ### Keywords: hplot + > + > ### ** Examples + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘CEriskav.Rmd’ using rmarkdown + ``` + +# bdsm + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/bdsm +* Date/Publication: 2025-05-02 18:50:02 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "bdsm")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + `expected`: "gg" "ggplot" + ── Failure ('test-model_sizes.R:21:3'): model_sizes creates correct lists with graphs ── + class(size_graphs[[3]]) (`actual`) not equal to c("gg", "ggplot", "ggarrange") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" "ggarrange" + `expected`: "gg" "ggplot" "ggarrange" + + [ FAIL 10 | WARN 0 | SKIP 6 | PASS 69 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘bdsm_vignette.Rnw’ using Sweave + Error: processing vignette 'bdsm_vignette.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'bdsm_vignette.tex' failed. + LaTeX errors: + ! LaTeX Error: File `vmargin.sty' not found. + + Type X to quit or to proceed, + or enter new name. (Default extension: sty) + ... + l.5 \usepackage + {amsmath}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘bdsm_vignette.Rnw’ + + SUMMARY: processing the following file failed: + ‘bdsm_vignette.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# BEAMR + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/annaSeffernick/BEAMR +* Source code: https://github.com/cran/BEAMR +* Date/Publication: 2024-07-27 16:00:06 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "BEAMR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BEAMR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gen_beam_plot_list + > ### Title: Generate BEAM Plot List + > ### Aliases: gen_beam_plot_list + > + > ### ** Examples + > + > data(beam_stats) + ... + + pair.order="omic", endpt.order=NULL) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggpubr package. + Please report the issue at . + Error in `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = structure(list( : + Can't add `ggtheme` to a object. + Error in plot.temp$plot : $ operator is invalid for atomic vectors + Calls: gen_beam_plot_list + Execution halted + ``` + +# behaviorchange + +
+ +* Version: 0.5.5 +* GitHub: NA +* Source code: https://github.com/cran/behaviorchange +* Date/Publication: 2023-03-04 23:20:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "behaviorchange")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘abcd-laagdrempelige_nederlandse_uitleg.Rmd’ using rmarkdown + --- finished re-building ‘abcd-laagdrempelige_nederlandse_uitleg.Rmd’ + + --- re-building ‘abcd.Rmd’ using rmarkdown + --- finished re-building ‘abcd.Rmd’ + + --- re-building ‘complecs.Rmd’ using rmarkdown + --- finished re-building ‘complecs.Rmd’ + + ... + + Error: processing vignette 'determinant-selection-tutorial.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `builtMeansPlot@layout`? + --- failed re-building ‘determinant-selection-tutorial.Rmd’ + + SUMMARY: processing the following file failed: + ‘determinant-selection-tutorial.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# benchr + +
+ +* Version: 0.2.5 +* GitHub: NA +* Source code: https://github.com/cran/benchr +* Date/Publication: 2020-03-07 06:30:03 UTC +* Number of recursive dependencies: 29 + +Run `revdepcheck::cloud_details(, "benchr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > if (requireNamespace("tinytest", quietly = TRUE)) { + + tinytest::test_package("benchr") + + } + + test-benchmark.R.............. 0 tests 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + ... + + test-plot.R................... 0 tests + test-plot.R................... 0 tests + test-plot.R................... 1 tests 1 fails + test-plot.R................... 2 tests 1 fails + test-plot.R................... 3 tests 2 fails + test-plot.R................... 4 tests 2 fails + test-plot.R................... 5 tests 2 fails + test-plot.R................... 5 tests 2 fails Error: Can't get S7 properties with `$`. Did you mean `bpp@layout`? + Execution halted + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# besthr + +
+ +* Version: 0.3.2 +* GitHub: NA +* Source code: https://github.com/cran/besthr +* Date/Publication: 2023-04-14 08:50:08 UTC +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "besthr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘besthr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.hrest + > ### Title: plots the 'hrest' object + > ### Aliases: plot.hrest + > + > ### ** Examples + > + > + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘basic-use.Rmd’ using rmarkdown + + Quitting from basic-use.Rmd:33-44 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'basic-use.Rmd' failed with diagnostics: + Can't add `x[[i]]` to a object. + --- failed re-building ‘basic-use.Rmd’ + + SUMMARY: processing the following file failed: + ‘basic-use.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# betaclust + +
+ +* Version: 1.0.4 +* GitHub: NA +* Source code: https://github.com/cran/betaclust +* Date/Publication: 2024-09-24 09:30:05 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "betaclust")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘vignettes.Rmd’ using rmarkdown + ``` + +# BGGM + +
+ +* Version: 2.1.5 +* GitHub: https://github.com/donaldRwilliams/BGGM +* Source code: https://github.com/cran/BGGM +* Date/Publication: 2024-12-22 21:40:02 UTC +* Number of recursive dependencies: 210 + +Run `revdepcheck::cloud_details(, "BGGM")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BGGM-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_prior + > ### Title: Plot: Prior Distribution + > ### Aliases: plot_prior + > + > ### ** Examples + > + > # note: iter = 250 for demonstrative purposes + > + > plot_prior(prior_sd = 0.25, iter = 250) + Warning: `qplot()` was deprecated in ggplot2 3.4.0. + ℹ The deprecated feature was likely used in the BGGM package. + Please report the issue at . + Error: C stack usage 9962276 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘control.Rmd’ using rmarkdown + --- finished re-building ‘control.Rmd’ + + --- re-building ‘hyp_3_ways.Rmd’ using rmarkdown + --- finished re-building ‘hyp_3_ways.Rmd’ + + --- re-building ‘in_tandem.Rmd’ using rmarkdown + --- finished re-building ‘in_tandem.Rmd’ + + ... + --- finished re-building ‘test_sum.Rmd’ + + --- re-building ‘var_model.Rmd’ using rmarkdown + --- finished re-building ‘var_model.Rmd’ + + SUMMARY: processing the following file failed: + ‘ppc_custom.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 12.6Mb + sub-directories of 1Mb or more: + doc 3.4Mb + help 1.1Mb + libs 7.3Mb + ``` + +# bibliometrix + +
+ +* Version: 4.3.5 +* GitHub: https://github.com/massimoaria/bibliometrix +* Source code: https://github.com/cran/bibliometrix +* Date/Publication: 2025-05-12 11:40:02 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "bibliometrix")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘bibliometrix-Ex.R’ failed + The error most likely occurred in: + + > ### Name: conceptualStructure + > ### Title: Creating and plotting conceptual structure map of a scientific + > ### field + > ### Aliases: conceptualStructure + > + > ### ** Examples + > + ... + > # EXAMPLE Conceptual Structure using Keywords Plus + > + > data(scientometrics, package = "bibliometrixData") + > + > CS <- conceptualStructure(scientometrics, + + field = "ID", method = "CA", + + stemming = FALSE, minDegree = 3, k.max = 5 + + ) + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(g)@data`? + Execution halted + ``` + +# biclustermd + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/jreisner/biclustermd +* Source code: https://github.com/cran/biclustermd +* Date/Publication: 2021-06-17 15:10:06 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "biclustermd")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(biclustermd) + Loading required package: ggplot2 + Loading required package: tidyr + + Attaching package: 'tidyr' + + ... + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. ├─base::sapply(aps$data, function(z) max(z$x) + 1) + 5. │ └─base::lapply(X = X, FUN = FUN, ...) + 6. ├─aps$data + 7. └─S7:::`$.S7_object`(aps, data) + + [ FAIL 9 | WARN 0 | SKIP 0 | PASS 55 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘nycflights13’ + All declared Imports should be used. + ``` + +# BIGL + +
+ +* Version: 1.9.3 +* GitHub: https://github.com/openanalytics/BIGL +* Source code: https://github.com/cran/BIGL +* Date/Publication: 2024-08-01 08:20:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "BIGL")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘analysis.Rmd’ using rmarkdown + ``` + +# bigsnpr + +
+ +* Version: 1.12.18 +* GitHub: https://github.com/privefl/bigsnpr +* Source code: https://github.com/cran/bigsnpr +* Date/Publication: 2024-11-26 10:30:02 UTC +* Number of recursive dependencies: 148 + +Run `revdepcheck::cloud_details(, "bigsnpr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘bigsnpr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: snp_gc + > ### Title: Genomic Control + > ### Aliases: snp_gc + > + > ### ** Examples + > + > set.seed(9) + ... + > gwas_gc <- snp_gc(gwas) # this modifies `attr(gwas_gc, "transfo")` + > snp_qq(gwas_gc) + > + > # The next plot should be prettier with a real dataset + > snp_manhattan(gwas_gc, + + infos.chr = test$map$chromosome, + + infos.pos = test$map$physical.pos) + + + ggplot2::geom_hline(yintercept = -log10(5e-8), linetype = 2, color = "red") + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(bigsnpr) + Loading required package: bigstatsr + > + > for (k in 1:9) + + test_check("bigsnpr", filter = paste0(k, '-')) + ... + 1. ├─bigsnpr::snp_manhattan(...) at test-4-pcadapt.R:55:3 + 2. │ ├─base::`$<-`(`*tmp*`, "plot_env", value = ``) + 3. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "plot_env", value = ``) + 4. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 5. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 6. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 81 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 17.7Mb + sub-directories of 1Mb or more: + libs 16.2Mb + ``` + +# bigstatsr + +
+ +* Version: 1.6.1 +* GitHub: https://github.com/privefl/bigstatsr +* Source code: https://github.com/cran/bigstatsr +* Date/Publication: 2024-09-09 21:40:02 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "bigstatsr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘bigstatsr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.big_SVD + > ### Title: Plot method + > ### Aliases: plot.big_SVD + > + > ### ** Examples + > + > set.seed(1) + ... + > print(obj3 <- obj2 + theme(legend.position = c(0.82, 0.17))) + > ## change the title and the labels of the axes + > obj3 + ggtitle("Yet another title") + xlab("with an other 'x' label") + > + > # loadings + > plot(svd, type = "loadings", loadings = 2) + > ## all loadings + > plot(svd, type = "loadings", loadings = 1:2, coeff = 0.7, ncol = 1) + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 18.5Mb + sub-directories of 1Mb or more: + extdata 2.3Mb + libs 15.4Mb + ``` + +# binsegRcpp + +
+ +* Version: 2023.8.31 +* GitHub: https://github.com/tdhock/binsegRcpp +* Source code: https://github.com/cran/binsegRcpp +* Date/Publication: 2023-09-06 04:30:11 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "binsegRcpp")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘binsegRcpp-Ex.R’ failed + The error most likely occurred in: + + > ### Name: random_set_vec + > ### Title: random set vec + > ### Aliases: random_set_vec + > + > ### ** Examples + > + > + ... + Backtrace: + ▆ + 1. ├─directlabels::direct.label(gg, "last.polygons") + 2. └─directlabels::direct.label.ggplot(gg, "last.polygons") + 3. └─directlabels::geom_dl(...) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +# biometryassist + +
+ +* Version: 1.2.2 +* GitHub: https://github.com/biometryhub/biometryassist +* Source code: https://github.com/cran/biometryassist +* Date/Publication: 2025-04-23 15:00:07 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "biometryassist")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(biometryassist) + > + > test_check("biometryassist") + Starting 2 test processes + [ FAIL 3 | WARN 4 | SKIP 122 | PASS 168 ] + + ... + • resplot/resplot-for-asreml-pt-1.svg + • resplot/resplot-for-asreml-pt-2.svg + • resplot/resplot-for-asreml-pt-3.svg + • resplot/resplot-for-asreml-single.svg + • resplot/resplot-for-lme4.svg + • resplot/resplot-for-sommer-mmer.svg + • resplot/resplot-for-sommer-mmes.svg + • resplot/resplot-with-smaller-call.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'asreml', 'ARTool', 'lme4', 'sommer' + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘lme4’ + ``` + +# biomod2 + +
+ +* Version: 4.2-6-2 +* GitHub: https://github.com/biomodhub/biomod2 +* Source code: https://github.com/cran/biomod2 +* Date/Publication: 2025-01-24 18:20:06 UTC +* Number of recursive dependencies: 245 + +Run `revdepcheck::cloud_details(, "biomod2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘biomod2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: BIOMOD.formated.data.PA + > ### Title: 'BIOMOD_FormatingData()' output object class (with + > ### pseudo-absences) + > ### Aliases: BIOMOD.formated.data.PA BIOMOD.formated.data.PA-class + > ### BIOMOD.formated.data.PA,numeric,data.frame-method + > ### BIOMOD.formated.data.PA,numeric,SpatRaster-method + > + ... + ▆ + 1. ├─base::plot(myBiomodData) + 2. └─biomod2::plot(myBiomodData) + 3. └─biomod2 (local) .local(x, ...) + 4. └─tidyterra::geom_spatraster(data = this_mask, aes(fill = factor(after_stat(value)))) + 5. └─ggplot2::layer(...) + 6. └─ggplot2:::validate_mapping(mapping, call_env) + 7. └─cli::cli_abort(msg, call = call) + 8. └─rlang::abort(...) + Execution halted + ``` + +# BioPred + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/BioPred +* Date/Publication: 2024-11-04 08:30:13 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "BioPred")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BioPred-Ex.R’ failed + The error most likely occurred in: + + > ### Name: subgrp_perf + > ### Title: Subgroup Performance Evaluation for Prognostic Cases + > ### Aliases: subgrp_perf + > + > ### ** Examples + > + > # Load a sample dataset + ... + 11. └─base_ops[[.Generic]](e1, e2) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. └─ggplot2::ggplot_add(object, p, objectname) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Tutorial.Rmd’ using rmarkdown + ``` + +# BiostatsUHNplus + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/BiostatsUHNplus +* Date/Publication: 2025-02-03 08:00:10 UTC +* Number of recursive dependencies: 141 + +Run `revdepcheck::cloud_details(, "BiostatsUHNplus")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BiostatsUHNplus-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ae_timeline_plot + > ### Title: Outputs related adverse event timeline plots including just + > ### system organ class (AE category), or system organ class and lowest + > ### level term (AE detail). This function can fit up to 5 different + > ### attributions. Modify width, height and scale parameters in ggsave() + > ### to customize fit for large plot. + > ### Aliases: ae_timeline_plot + ... + Error in `validate_element_list()`: + ! The `text_y` argument should be a list of objects. + Backtrace: + ▆ + 1. └─BiostatsUHNplus::ae_timeline_plot(...) + 2. └─ggh4x::strip_nested(...) + 3. └─ggh4x:::validate_element_list(text_y, "element_text") + 4. └─cli::cli_abort("The {.arg {argname}} argument should be a list of {.cls {prototype}} \\\n objects.") + 5. └─rlang::abort(...) + Execution halted + ``` + +# BioVizSeq + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/BioVizSeq +* Date/Publication: 2025-04-11 16:30:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "BioVizSeq")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BioVizSeq-Ex.R’ failed + The error most likely occurred in: + + > ### Name: combi_p + > ### Title: combi_p + > ### Aliases: combi_p + > + > ### ** Examples + > + > tree_path <- system.file("extdata", "idpep.nwk", package = "BioVizSeq") + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# biplotEZ + +
+ +* Version: 2.2 +* GitHub: NA +* Source code: https://github.com/cran/biplotEZ +* Date/Publication: 2024-11-13 18:20:09 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "biplotEZ")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘biplotEZ-Ex.R’ failed + The error most likely occurred in: + + > ### Name: samples + > ### Title: Format aesthetics for the biplot samples + > ### Aliases: samples + > + > ### ** Examples + > + > biplot(iris[,1:4]) |> PCA() |> samples(col="purple",pch=15, opacity=0.5) |> plot() + ... + Warning: Use of `df$z` is discouraged. + ℹ Use `z` instead. + Warning: Use of `df$x` is discouraged. + ℹ Use `x` instead. + Warning: Use of `df$y` is discouraged. + ℹ Use `y` instead. + Warning: Use of `df$z` is discouraged. + ℹ Use `z` instead. + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(pp)@layout`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Biplots_in_1D.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘bipl5’ + ``` + +# BiVariAn + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/AndresFloresG/BiVariAn +* Source code: https://github.com/cran/BiVariAn +* Date/Publication: 2025-03-05 13:10:02 UTC +* Number of recursive dependencies: 199 + +Run `revdepcheck::cloud_details(, "BiVariAn")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BiVariAn-Ex.R’ failed + The error most likely occurred in: + + > ### Name: auto_bar_categ + > ### Title: Automatic generation of barplot with percentages + > ### Aliases: auto_bar_categ + > + > ### ** Examples + > + > data<-data.frame(categ = rep(letters[1:2], 10), + ... + 1. └─BiVariAn::auto_bar_categ(data = data, groupvar = "categ", lang_labs = "EN") + 2. └─BiVariAn (local) theme_func() + 3. ├─... %+replace% ... + 4. │ └─ggplot2::is_theme(e1) + 5. │ └─S7::S7_inherits(x, class_theme) + 6. └─ggprism::theme_prism(...) + 7. └─parent %+replace% t + 8. └─cli::cli_abort("{.code %+replace%} requires two theme objects") + 9. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + 4. │ └─ggplot2::is_theme(e1) + 5. │ └─S7::S7_inherits(x, class_theme) + 6. └─ggprism::theme_prism(...) + 7. └─parent %+replace% t + 8. └─cli::cli_abort("{.code %+replace%} requires two theme objects") + 9. └─rlang::abort(...) + + [ FAIL 8 | WARN 2 | SKIP 7 | PASS 100 ] + Error: Test failures + Execution halted + ``` + +# blockCV + +
+ +* Version: 3.1-5 +* GitHub: https://github.com/rvalavi/blockCV +* Source code: https://github.com/cran/blockCV +* Date/Publication: 2024-11-01 08:20:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "blockCV")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ── Failure ('test-cv_plot.R:20:13'): test that cv_plot function works ────────── + `plt` has type 'object', not 'list'. + ── Failure ('test-cv_similarity.R:23:13'): test that cv_similarity function works with cv_spatil ── + `plt` has type 'object', not 'list'. + ── Failure ('test-cv_similarity.R:39:13'): test that cv_similarity function works with cv_buffer ── + `plt` has type 'object', not 'list'. + + [ FAIL 3 | WARN 0 | SKIP 1 | PASS 316 ] + Error: Test failures + Execution halted + ``` + +# bmstdr + +
+ +* Version: 0.8.2 +* GitHub: https://github.com/sujit-sahu/bmstdr +* Source code: https://github.com/cran/bmstdr +* Date/Publication: 2025-03-31 17:30:06 UTC +* Number of recursive dependencies: 206 + +Run `revdepcheck::cloud_details(, "bmstdr")` for more info + +
+ +## Newly broken + +* checking whether package ‘bmstdr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bmstdr/new/bmstdr.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking installed package size ... NOTE + ``` + installed size is 144.1Mb + sub-directories of 1Mb or more: + data 1.5Mb + libs 139.8Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bmstdr’ ... +** package ‘bmstdr’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: .onLoad failed in loadNamespace() for 'rstan', details: + call: NULL + error: C stack usage 9962804 is too close to the limit +Execution halted +ERROR: lazy loading failed for package ‘bmstdr’ +* removing ‘/tmp/workdir/bmstdr/new/bmstdr.Rcheck/bmstdr’ + + +``` +### CRAN + +``` +* installing *source* package ‘bmstdr’ ... +** package ‘bmstdr’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** checking absolute paths in shared objects and dynamic libraries +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (bmstdr) + + +``` +# bnma + +
+ +* Version: 1.6.0 +* GitHub: NA +* Source code: https://github.com/cran/bnma +* Date/Publication: 2024-02-11 01:10:02 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "bnma")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘bnma.Rmd’ using rmarkdown + + Quitting from bnma.Rmd:87-99 [unnamed-chunk-8] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@layout`? + --- + ... + + Error: processing vignette 'bnma.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@layout`? + --- failed re-building ‘bnma.Rmd’ + + SUMMARY: processing the following file failed: + ‘bnma.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# BNPdensity + +
+ +* Version: 2023.3.8 +* GitHub: NA +* Source code: https://github.com/cran/BNPdensity +* Date/Publication: 2023-03-24 15:10:02 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "BNPdensity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BNPdensity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: GOFplots_noncensored + > ### Title: Plot Goodness of fits graphical checks for non censored data + > ### Aliases: GOFplots_noncensored + > + > ### ** Examples + > + > + > set.seed(150520) + > data(acidity) + > out <- MixNRMI1(acidity, extras = TRUE, Nit = 100) + >>> Total processing time (sec.): + user system elapsed + 1.693 0.030 1.723 + > BNPdensity:::GOFplots_noncensored(out) + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.2Mb + sub-directories of 1Mb or more: + data 3.5Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) MvInv.Rd:23-35: Lost braces + 23 | function(eps, u = 0.5, alpha = 1, kappa = 1, gama = 1 / 2, N = 3001) { + | ^ + checkRd: (-1) dt_.Rd:19-21: Lost braces + 19 | function(x, df, mean, sd) { + | ^ + ``` + +# boxly + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/Merck/boxly +* Source code: https://github.com/cran/boxly +* Date/Publication: 2023-10-24 02:40:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "boxly")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 16. ├─plotly::add_trace(...) + 17. │ └─plotly::add_data(p, data) + 18. │ └─plotly:::is.plotly(p) + 19. ├─plotly::ggplotly(p, tooltip = "text", dynamicTicks = TRUE) + 20. └─plotly:::ggplotly.ggplot(p, tooltip = "text", dynamicTicks = TRUE) + 21. └─plotly::gg2list(...) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 25 ] + Error: Test failures + Execution halted + ``` + +# BrailleR + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/ajrgodfrey/BrailleR +* Source code: https://github.com/cran/BrailleR +* Date/Publication: 2023-07-10 19:10:12 UTC +* Number of recursive dependencies: 199 + +Run `revdepcheck::cloud_details(, "BrailleR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘BrailleR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: AddXMLMethod + > ### Title: Create XML files to sit alongside SVG files in order to make an + > ### accessible graph experience. + > ### Aliases: AddXML AddXML.default AddXML.boxplot AddXML.dotplot + > ### AddXML.eulerr AddXML.ggplot AddXML.histogram AddXML.scatterplot + > ### AddXML.tsplot + > + ... + > + > # Open a new PDF device, but + > #discard the output instead of saving it to a file + > pdf(NULL) + > + > # Plot the ggplot object on the current device + > simpleHist + `stat_bin()` using `bins = 30`. Pick better value `binwidth`. + Error: Can't get S7 properties with `$`. Did you mean `xbuild@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘VI.ggplot.test.R’ + Running the tests in ‘tests/VI.ggplot.test.R’ failed. + Complete output: + > library(BrailleR) + The BrailleR.View, option is set to FALSE. + + Attaching package: 'BrailleR' + + The following objects are masked from 'package:graphics': + + ... + > # points, smoothing, log-transform, xlim + > VI(qplot(data=m, disp,mpg, facets=.~am, margins=TRUE, + + geom=c("point","smooth"), main="Cars, cars, cars", xlab="displacement", + + ylab="Miles per gallon", log="y", xlim=c(90,450))) + Error: Can't get S7 properties with `$`. Did you mean `xbuild@layout`? + In addition: Warning messages: + 1: `qplot()` was deprecated in ggplot2 3.4.0. + 2: Removed 12 rows containing non-finite outside the scale range + (`stat_smooth()`). + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘BrailleR.Rmd’ using rmarkdown + --- finished re-building ‘BrailleR.Rmd’ + + --- re-building ‘BrailleRHistory.rmd’ using rmarkdown + ``` + +# breakDown + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/pbiecek/breakDown +* Source code: https://github.com/cran/breakDown +* Date/Publication: 2024-03-11 23:30:02 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "breakDown")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(breakDown) + > + > test_check("breakDown") + contribution + (Intercept) 0.240 + - number_project = 2 -0.048 + ... + ── Failure ('test_plot.R:37:3'): Output format ───────────────────────────────── + plot(broken_glm_classif, top_features = 3, min_delta = 0.1) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_plot.R:41:3'): Output format ───────────────────────────────── + plot(broken_rf_classif_extended, plot_distributions = TRUE, add_contributions = FALSE) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_plot.R:42:3'): Output format ───────────────────────────────── + plot(broken_rf_classif_extended, plot_distributions = TRUE) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 9 | WARN 13 | SKIP 0 | PASS 19 ] + Error: Test failures + Execution halted + ``` + +# breathtestcore + +
+ +* Version: 0.8.9 +* GitHub: https://github.com/dmenne/breathtestcore +* Source code: https://github.com/cran/breathtestcore +* Date/Publication: 2025-01-08 09:20:12 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "breathtestcore")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > library(testthat) + > + > #options(Ncpus = parallelly::availableCores(omit = 1)) + > #options(Ncpus = 1) + > options(lifecycle_verbosity = "warning") + > test_check("breathtestcore") + Loading required package: breathtestcore + ... + 1. ├─testthat::expect_equal(nlayers(p), 1) at test_plot_breathtestfit.R:80:3 + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. └─breathtestcore (local) nlayers(p) + 5. ├─ggplot_build(x)$data at test_plot_breathtestfit.R:1:12 + 6. └─S7:::`$.S7_object`(ggplot_build(x), data) at test_plot_breathtestfit.R:1:12 + + [ FAIL 5 | WARN 0 | SKIP 4 | PASS 352 ] + Error: Test failures + Execution halted + ``` + +# brolgar + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/njtierney/brolgar +* Source code: https://github.com/cran/brolgar +* Date/Publication: 2024-05-10 14:50:34 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "brolgar")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘brolgar-Ex.R’ failed + The error most likely occurred in: + + > ### Name: facet_sample + > ### Title: Facet data into groups to facilitate exploration + > ### Aliases: facet_sample + > + > ### ** Examples + > + > library(ggplot2) + > ggplot(heights, + + aes(x = year, + + y = height_cm, + + group = country)) + + + geom_line() + + + facet_sample() + Error in if (params$as.table) { : argument is of length zero + Calls: ... -> setup -> -> compute_layout + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘exploratory-modelling.Rmd’ using rmarkdown + + Quitting from exploratory-modelling.Rmd:46-56 [use-gg-highlight] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'exploratory-modelling.Rmd' failed with diagnostics: + Can't add `gghighlight(.slope_xp < 0)` to a object. + --- failed re-building ‘exploratory-modelling.Rmd’ + + --- re-building ‘finding-features.Rmd’ using rmarkdown + ``` + +# broom.mixed + +
+ +* Version: 0.2.9.6 +* GitHub: https://github.com/bbolker/broom.mixed +* Source code: https://github.com/cran/broom.mixed +* Date/Publication: 2024-10-15 22:20:02 UTC +* Number of recursive dependencies: 186 + +Run `revdepcheck::cloud_details(, "broom.mixed")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘broom_mixed_intro.rmd’ using rmarkdown + + Quitting from broom_mixed_intro.rmd:64-80 [dwplot1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + + Error: processing vignette 'broom_mixed_intro.rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘broom_mixed_intro.rmd’ + + SUMMARY: processing the following file failed: + ‘broom_mixed_intro.rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.5Mb + sub-directories of 1Mb or more: + extdata 5.0Mb + ``` + +# bsitar + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/Sandhu-SS/bsitar +* Source code: https://github.com/cran/bsitar +* Date/Publication: 2025-02-07 06:50:02 UTC +* Number of recursive dependencies: 167 + +Run `revdepcheck::cloud_details(, "bsitar")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Bayesian_SITAR_model_An_Introduction.Rmd’ using rmarkdown + --- finished re-building ‘Bayesian_SITAR_model_An_Introduction.Rmd’ + + --- re-building ‘Bayesian_SITAR_model_fit.Rmd’ using rmarkdown + + Quitting from Bayesian_SITAR_model_fit.Rmd:280-288 [prepare_adv_bsitar_1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ... + + Error: processing vignette 'Bayesian_SITAR_model_fit.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `getbuiltingg@data`? + --- failed re-building ‘Bayesian_SITAR_model_fit.Rmd’ + + SUMMARY: processing the following file failed: + ‘Bayesian_SITAR_model_fit.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.7Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 8.0Mb + ``` + +# bvhar + +
+ +* Version: 2.2.2 +* GitHub: https://github.com/ygeunkim/bvhar +* Source code: https://github.com/cran/bvhar +* Date/Publication: 2025-02-28 09:40:08 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "bvhar")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘bvhar.Rmd’ using rmarkdown + --- finished re-building ‘bvhar.Rmd’ + + --- re-building ‘forecasting.Rmd’ using rmarkdown + + Quitting from forecasting.Rmd:241-248 [predplot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ... + 64. └─grid:::validDetails.text(x) + 65. ├─base::as.character(x$label) + 66. └─base::as.character.default(x$label) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'shrinkage.Rmd' failed with diagnostics: + cannot coerce type 'object' to vector of type 'character' + --- failed re-building ‘shrinkage.Rmd’ + + --- re-building ‘stochastic-volatility.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 172.9Mb + sub-directories of 1Mb or more: + libs 170.9Mb + ``` + +# CAinterprTools + +
+ +* Version: 1.1.0 +* GitHub: NA +* Source code: https://github.com/cran/CAinterprTools +* Date/Publication: 2020-06-05 22:00:09 UTC +* Number of recursive dependencies: 138 + +Run `revdepcheck::cloud_details(, "CAinterprTools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘CAinterprTools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: caScatter + > ### Title: Scatterplot visualization facility + > ### Aliases: caScatter + > ### Keywords: caScatter + > + > ### ** Examples + > + > data(greenacre_data) + > + > # symmetric scatterplot for rows and columns + > caScatter(greenacre_data, 1, 2, type=1) + Error: object properties are invalid: + - @face must be or , not + Execution halted + ``` + +# calibmsm + +
+ +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/calibmsm +* Date/Publication: 2024-06-14 09:40:02 UTC +* Number of recursive dependencies: 148 + +Run `revdepcheck::cloud_details(, "calibmsm")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + `expected`: "gg" "ggplot" "ggarrange" + ── Failure ('test-plot_calib.R:278:3'): check plot.calib_mlr output (j = 3, s = 100) ── + class(plot.object) (`actual`) not equal to c("gg", "ggplot", "ggarrange") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" "ggarrange" + `expected`: "gg" "ggplot" "ggarrange" + + [ FAIL 10 | WARN 10 | SKIP 16 | PASS 201 ] + Error: Test failures + Execution halted + ``` + +# calmr + +
+ +* Version: 0.7.0 +* GitHub: https://github.com/victor-navarro/calmr +* Source code: https://github.com/cran/calmr +* Date/Publication: 2025-05-11 21:30:02 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "calmr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(calmr) + + Attaching package: 'calmr' + + The following object is masked from 'package:stats': + ... + 16. └─ggplot2:::add_ggplot(e1, e2, e2name) + 17. └─ggplot2::ggplot_add(object, p, objectname) + 18. ├─S7::S7_dispatch() + 19. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 20. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 21. └─rlang::abort(...) + + [ FAIL 8 | WARN 5 | SKIP 0 | PASS 241 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ANCCR.Rmd’ using rmarkdown + --- finished re-building ‘ANCCR.Rmd’ + + --- re-building ‘HD2022.Rmd’ using rmarkdown + --- finished re-building ‘HD2022.Rmd’ + + --- re-building ‘MAC1975.Rmd’ using rmarkdown + --- finished re-building ‘MAC1975.Rmd’ + + ... + --- re-building ‘RW1972.Rmd’ using rmarkdown + --- finished re-building ‘RW1972.Rmd’ + + --- re-building ‘SM2007.Rmd’ using rmarkdown + --- finished re-building ‘SM2007.Rmd’ + + --- re-building ‘TD.Rmd’ using rmarkdown + --- finished re-building ‘TD.Rmd’ + + --- re-building ‘calmr.Rmd’ using rmarkdown + ``` + +# camcorder + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/camcorder +* Date/Publication: 2022-10-03 07:40:05 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "camcorder")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 3 | PASS 8 ] + Deleting unused snapshots: + • recording/camcorder_preview_ggplot2.png + • recording/camcorder_preview_patchwork.png + • recording/camcorder_preview_polaroid.png + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) Recording.Rd:112: Lost braces; missing escapes or markup? + 112 | Stop recording images with {camcorder}. + | ^ + ``` + +# canvasXpress + +
+ +* Version: 1.56.1 +* GitHub: https://github.com/neuhausi/canvasXpress +* Source code: https://github.com/cran/canvasXpress +* Date/Publication: 2025-04-08 19:30:02 UTC +* Number of recursive dependencies: 147 + +Run `revdepcheck::cloud_details(, "canvasXpress")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(canvasXpress) + > require(canvasXpress.data) + Loading required package: canvasXpress.data + > + > test_check("canvasXpress") + Loading required package: htmlwidgets + ... + 3. └─canvasXpress::ggplot.as.list(gplot) + 4. └─canvasXpress:::gg_cxplot(o, "canvas", ...) + 5. └─canvasXpress:::gg_scales(o, bld) + 6. ├─b[[3]] + 7. └─S7:::`[[.S7_object`(b, 3) + 8. └─S7:::check_subsettable(x, allow_env = TRUE) + + [ FAIL 9 | WARN 1 | SKIP 479 | PASS 58 ] + Error: Test failures + Execution halted + ``` + +# CARBayesST + +
+ +* Version: 4.0 +* GitHub: https://github.com/duncanplee/CARBayesST +* Source code: https://github.com/cran/CARBayesST +* Date/Publication: 2023-10-30 16:40:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "CARBayesST")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘CARBayesST.Rnw’ using Sweave + Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE + + Attaching package: ‘dplyr’ + + The following objects are masked from ‘package:stats’: + + filter, lag + ... + Loading required package: ggplot2 + Error: processing vignette 'CARBayesST.Rnw' failed with diagnostics: + C stack usage 9963172 is too close to the limit + --- failed re-building ‘CARBayesST.Rnw’ + + SUMMARY: processing the following file failed: + ‘CARBayesST.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘CARBayesST.Rnw’ using Sweave + Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE + + Attaching package: ‘dplyr’ + + The following objects are masked from ‘package:stats’: + + filter, lag + + ... + l.11 ^^M + + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘CARBayesST.Rnw’ + + SUMMARY: processing the following file failed: + ‘CARBayesST.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.3Mb + sub-directories of 1Mb or more: + R 1.5Mb + libs 7.6Mb + ``` + +# carbonr + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/carbonr +* Date/Publication: 2024-10-16 18:10:09 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "carbonr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(carbonr) + > + > test_check("carbonr") + [ FAIL 3 | WARN 7 | SKIP 0 | PASS 117 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test-output_display.R:15:3'): output_display generates gg/ggplot object ── + class(output1) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test-output_display.R:16:3'): output_display generates gg/ggplot object ── + class(output2) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 3 | WARN 7 | SKIP 0 | PASS 117 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘sp’ ‘tibble’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 710 marked UTF-8 strings + ``` + +# caret + +
+ +* Version: 7.0-1 +* GitHub: https://github.com/topepo/caret +* Source code: https://github.com/cran/caret +* Date/Publication: 2024-12-10 01:30:01 UTC +* Number of recursive dependencies: 192 + +Run `revdepcheck::cloud_details(, "caret")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘caret.Rmd’ using rmarkdown + + Quitting from caret.Rmd:180-182 [pls-plot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'caret.Rmd' failed with diagnostics: + ... + Caused by error in `check_data_frame_like()`: + ! `dim(data)` must return an of + length 2. + --- failed re-building ‘caret.Rmd’ + + SUMMARY: processing the following file failed: + ‘caret.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# caretEnsemble + +
+ +* Version: 4.0.1 +* GitHub: https://github.com/zachmayer/caretEnsemble +* Source code: https://github.com/cran/caretEnsemble +* Date/Publication: 2024-09-12 21:50:09 UTC +* Number of recursive dependencies: 175 + +Run `revdepcheck::cloud_details(, "caretEnsemble")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘caretEnsemble-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot.caretStack + > ### Title: Convenience function for more in-depth diagnostic plots of + > ### caretStack objects + > ### Aliases: autoplot.caretStack + > + > ### ** Examples + > + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > testthat::test_check("caretEnsemble") + Loading required package: caretEnsemble + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 610 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Error ('test-caretEnsemble.R:202:5'): ggplot2::autoplot.caretEnsemble works ── + Error in ``method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = , + ... + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 610 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Version-4.0-New-Features.Rmd’ using rmarkdown + ``` + +# cartograflow + +
+ +* Version: 1.0.5 +* GitHub: https://github.com/fbahoken/cartogRaflow +* Source code: https://github.com/cran/cartograflow +* Date/Publication: 2023-10-17 22:40:21 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "cartograflow")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cartograflow-Ex.R’ failed + The error most likely occurred in: + + > ### Name: flowgini + > ### Title: Analysis of flow concentration (Gini coefficient) + > ### Aliases: flowgini + > + > ### ** Examples + > + > library(cartograflow) + ... + ℹ Use `flowcum` instead. + Warning: Use of `x$linkcum` is discouraged. + ℹ Use `linkcum` instead. + Warning: Use of `x$flowcum` is discouraged. + ℹ Use `flowcum` instead. + Warning: Use of `x$flowcum` is discouraged. + ℹ Use `flowcum` instead. + Error in pm[[2]] : subscript out of bounds + Calls: flowgini ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# cartographr + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/da-wi/cartographr +* Source code: https://github.com/cran/cartographr +* Date/Publication: 2024-06-28 14:50:09 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "cartographr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cartographr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_map + > ### Title: Plot a map with custom palette + > ### Aliases: plot_map + > + > ### ** Examples + > + > data("osm") + > my_map <- osm |> plot_map(palette = 'gray') + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Failure ('test-theme.R:12:3'): theme_poster returns a ggplot2 theme object and handles invalid fonts ── + theme_poster_anton() inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + ── Failure ('test-theme.R:13:3'): theme_poster returns a ggplot2 theme object and handles invalid fonts ── + theme_poster_poppins() inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + ── Failure ('test-utils.R:13:3'): add_attribution returns correct ggplot2 labs object ── + `result` inherits from 'ggplot2::labels'/'gg'/'S7_object' not 'labels'. + + [ FAIL 12 | WARN 0 | SKIP 0 | PASS 94 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.3Mb + sub-directories of 1Mb or more: + data 3.5Mb + ``` + +# casebase + +
+ +* Version: 0.10.6 +* GitHub: https://github.com/sahirbhatnagar/casebase +* Source code: https://github.com/cran/casebase +* Date/Publication: 2024-08-17 23:20:05 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "casebase")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘casebase-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ERSPC + > ### Title: Data on the men in the European Randomized Study of Prostate + > ### Cancer Screening + > ### Aliases: ERSPC + > ### Keywords: datasets + > + > ### ** Examples + ... + + event = "DeadOfPrCa", + + exposure = "ScrArm") + 'Follow.Up.Time' will be used as the time variable + > + > plot(pt_object_strat, + + facet.params = list(ncol = 2)) + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘competingRisk.Rmd’ using rmarkdown + ``` + +# cats + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/cats +* Date/Publication: 2022-03-11 10:20:07 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "cats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: trial_ocs + > ### Title: Calculates the operating characteristics of the cohort trial + > ### Aliases: trial_ocs + > + > ### ** Examples + > + > + ... + + safety_prob = safety_prob, Bayes_Sup1 = Bayes_Sup1, Bayes_Sup2 = Bayes_Sup2, + + cohort_offset = cohort_offset, sr_first_pos = sr_first_pos, + + missing_prob = missing_prob, cohort_fixed = cohort_fixed, accrual_type = accrual_type, + + accrual_param = accrual_param, hist_lag = hist_lag, analysis_times = analysis_times, + + time_trend = time_trend, cohorts_start = cohorts_start, cohorts_sim = cohorts_sim, + + iter = 2, coresnum = 1, save = FALSE, ret_list = TRUE, plot_ocs = TRUE + + ) + Error in pm[[2]] : subscript out of bounds + Calls: trial_ocs -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘epitools’ ‘forcats’ ‘purrr’ + All declared Imports should be used. + ``` + +# causact + +
+ +* Version: 0.5.7 +* GitHub: https://github.com/flyaflya/causact +* Source code: https://github.com/cran/causact +* Date/Publication: 2025-01-15 21:20:01 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "causact")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(causact) + WARNING: The 'r-causact' Conda environment does not exist. To use the 'dag_numpyro()' function, you need to set up the 'r-causact' environment. Run install_causact_deps() when ready to set up the 'r-causact' environment. + + Attaching package: 'causact' + + The following objects are masked from 'package:stats': + ... + WARNING: The 'r-causact' Conda environment does not exist. To use the 'dag_numpyro()' function, you need to set up the 'r-causact' environment. Run install_causact_deps() when ready to set up the 'r-causact' environment. + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 60 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-dag_plot.R:4:3'): dag plot creates graph ───────────────────── + `plotGr` has type 'object', not 'list'. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 60 ] + Error: Test failures + Execution halted + ``` + +# CausalImpact + +
+ +* Version: 1.3.0 +* GitHub: NA +* Source code: https://github.com/cran/CausalImpact +* Date/Publication: 2022-11-09 08:40:40 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "CausalImpact")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘CausalImpact_import_test.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # Copyright 2014-2022 Google Inc. All rights reserved. + > # + > # Licensed under the Apache License, Version 2.0 (the "License"); + > # you may not use this file except in compliance with the License. + > # You may obtain a copy of the License at + > # + ... + ▆ + 1. ├─base::`$<-`(`*tmp*`, plot_env, value = ``) at test-impact-plot.R:141:3 + 2. ├─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, plot_env, value = ``) at test-impact-plot.R:141:3 + 3. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 4. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 5. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 3 | WARN 4 | SKIP 0 | PASS 737 ] + Error: Test failures + Execution halted + ``` + +# CausalQueries + +
+ +* Version: 1.3.3 +* GitHub: https://github.com/integrated-inferences/CausalQueries +* Source code: https://github.com/cran/CausalQueries +* Date/Publication: 2025-02-22 11:20:02 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "CausalQueries")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘CausalQueries-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_model + > ### Title: Plots a DAG in ggplot style using a causal model input + > ### Aliases: plot_model + > ### Keywords: internal + > + > ### ** Examples + > + ... + ▆ + 1. ├─base::plot(...) + 2. └─CausalQueries:::plot.causal_model(...) + 3. └─CausalQueries::plot_model(x, ...) + 4. └─ggraph::geom_edge_arc(...) + 5. └─ggplot2::layer(...) + 6. └─ggplot2:::validate_mapping(mapping, call_env) + 7. └─cli::cli_abort(msg, call = call) + 8. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 66.2Mb + sub-directories of 1Mb or more: + libs 65.1Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# cellularautomata + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/cellularautomata +* Date/Publication: 2024-11-20 19:10:06 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "cellularautomata")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cellularautomata-Ex.R’ failed + The error most likely occurred in: + + > ### Name: wolfram_rule_def + > ### Title: Plot the definition of a Wolfram rule + > ### Aliases: wolfram_rule_def + > + > ### ** Examples + > + > wolfram_rule_def(30) + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘basic-usage.Rmd’ using rmarkdown + ``` + +# centerline + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/atsyplenkov/centerline +* Source code: https://github.com/cran/centerline +* Date/Publication: 2025-03-16 04:40:02 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "centerline")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘centerline-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_cnt_text + > ### Title: Plot label or text on centerline with ggplot2 + > ### Aliases: geom_cnt_text geom_cnt_label + > + > ### ** Examples + > + > ## Don't show: + ... + 22. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 23. │ └─self$draw_panel(...) + 24. │ └─geomtextpath (local) draw_panel(...) + 25. │ └─geomtextpath:::sf_textgrob(...) + 26. └─base::.handleSimpleError(...) + 27. └─rlang (local) h(simpleError(msg, call)) + 28. └─handlers[[1L]](cnd) + 29. └─cli::cli_abort(...) + 30. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 6. └─base::lapply(...) + 7. └─ggplot2 (local) FUN(X[[i]], ...) + 8. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 9. └─self$draw_panel(...) + 10. └─geomtextpath (local) draw_panel(...) + 11. └─geomtextpath:::sf_textgrob(...) + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 245 ] + Error: Test failures + Execution halted + ``` + +# Certara.DarwinReporter + +
+ +* Version: 2.0.1 +* GitHub: NA +* Source code: https://github.com/cran/Certara.DarwinReporter +* Date/Publication: 2025-03-07 16:40:13 UTC +* Number of recursive dependencies: 150 + +Run `revdepcheck::cloud_details(, "Certara.DarwinReporter")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(Certara.DarwinReporter) + > + > test_check("Certara.DarwinReporter") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-generate_ui.R:24:3'): theme_certara() returns valid ui class ── + `theme` inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ] + Error: Test failures + Execution halted + ``` + +# Certara.ModelResults + +
+ +* Version: 3.0.1 +* GitHub: NA +* Source code: https://github.com/cran/Certara.ModelResults +* Date/Publication: 2025-03-03 11:50:24 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "Certara.ModelResults")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(Certara.ModelResults) + > + > test_check("Certara.ModelResults") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-generate_ui.R:24:3'): theme_certara() returns valid ui class ── + `theme` inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ] + Error: Test failures + Execution halted + ``` + +# Certara.RsNLME.ModelBuilder + +
+ +* Version: 3.0.1 +* GitHub: NA +* Source code: https://github.com/cran/Certara.RsNLME.ModelBuilder +* Date/Publication: 2024-12-20 11:00:10 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "Certara.RsNLME.ModelBuilder")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(Certara.RsNLME.ModelBuilder) + > library(Certara.RsNLME) + > + > test_check("Certara.RsNLME.ModelBuilder") + [ FAIL 1 | WARN 0 | SKIP 1 | PASS 6 ] + + ... + • cannot start the test, INSTALLDIR variable is not specified. (1): + 'test_estimatesUI.R:2:3' + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-generate_ui.R:24:3'): theme_certara() returns valid ui class ── + `theme` inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 1 | WARN 0 | SKIP 1 | PASS 6 ] + Error: Test failures + Execution halted + ``` + +# Certara.RsNLME.ModelExecutor + +
+ +* Version: 3.0.2 +* GitHub: NA +* Source code: https://github.com/cran/Certara.RsNLME.ModelExecutor +* Date/Publication: 2025-03-19 14:50:01 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "Certara.RsNLME.ModelExecutor")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(Certara.RsNLME.ModelExecutor) + > + > test_check("Certara.RsNLME.ModelExecutor") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-generate_ui.R:24:3'): theme_certara() returns valid ui class ── + `theme` inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] + Error: Test failures + Execution halted + ``` + +# Certara.Xpose.NLME + +
+ +* Version: 2.0.2 +* GitHub: NA +* Source code: https://github.com/cran/Certara.Xpose.NLME +* Date/Publication: 2025-01-28 15:50:10 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "Certara.Xpose.NLME")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Certara.Xpose.NLME-Ex.R’ failed + The error most likely occurred in: + + > ### Name: eta_vs_cov + > ### Title: ETAs vs covariate Plot + > ### Aliases: eta_vs_cov + > + > ### ** Examples + > + > eta_vs_cov(xpose::xpdb_ex_pk, + ... + Using data from $prob no.1 + Removing duplicated rows based on: ID + Tidying data by ID, SEX, MED1, MED2, DOSE ... and 23 more variables + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the Certara.Xpose.NLME package. + Please report the issue to the authors. + Error: Can't find property @i + Execution halted + ``` + +# ceterisParibus + +
+ +* Version: 0.6 +* GitHub: https://github.com/pbiecek/ceterisParibus +* Source code: https://github.com/cran/ceterisParibus +* Date/Publication: 2024-11-21 10:20:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "ceterisParibus")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ceterisParibus) + Loading required package: ggplot2 + Loading required package: gower + > + > test_check("ceterisParibus") + Welcome to DALEX (version: 2.4.3). + ... + ── Failure ('test_local_fit.R:14:3'): Plotting local_fit_explainer ───────────── + plot(cr_rf, palette = "wangkardu") inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_what_if.R:18:3'): Plotting what_if_explainer ───────────────── + plot(wi_rf_all, quantiles = FALSE) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_what_if.R:19:3'): Plotting what_if_explainer ───────────────── + plot(wi_rf, wi_lm, color = "models", split = "variable") inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 12 | WARN 3 | SKIP 0 | PASS 17 ] + Error: Test failures + Execution halted + ``` + +# CGGP + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/CollinErickson/CGGP +* Source code: https://github.com/cran/CGGP +* Date/Publication: 2024-01-23 03:22:57 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "CGGP")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(CGGP) + > + > test_check("CGGP") + [ FAIL 5 | WARN 2 | SKIP 0 | PASS 691 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('testplot.R:38:3'): Plots work ───────────────────────────────────── + `pval` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('testplot.R:90:3'): Plots work ───────────────────────────────────── + `pval` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('testplot.R:93:3'): Plots work ───────────────────────────────────── + `pval2` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 5 | WARN 2 | SKIP 0 | PASS 691 ] + Error: Test failures + Execution halted + ``` + +# CGPfunctions + +
+ +* Version: 0.6.3 +* GitHub: https://github.com/ibecav/CGPfunctions +* Source code: https://github.com/cran/CGPfunctions +* Date/Publication: 2020-11-12 14:50:09 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(CGPfunctions) + > + > test_check("CGPfunctions") + [ FAIL 1 | WARN 4 | SKIP 0 | PASS 2 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ▆ + 1. ├─testthat::expect_equal(length(pb$data), 5L) at test-newggslopegraph.R:40:1 + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. ├─pb$data + 5. └─S7:::`$.S7_object`(pb, data) + + [ FAIL 1 | WARN 4 | SKIP 0 | PASS 2 ] + Error: Test failures + Execution halted + ``` + +# changepoint.influence + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/rkillick/changepoint.influence +* Source code: https://github.com/cran/changepoint.influence +* Date/Publication: 2024-02-20 02:20:07 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "changepoint.influence")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test.R’ + Running the tests in ‘tests/test.R’ failed. + Complete output: + > ################################################ + > ############ Well Log Examples ################# + > ################################################ + > + > library(changepoint.influence) + Loading required package: changepoint + Loading required package: zoo + ... + > #### Parameter Stability plot #### + > ParameterStability(welllogs.inf, original.mean = rep(param.est(out.PELT)$mean, times=diff(c(0,out.PELT@cpts))), las = 1, ylab = 'Nuclear-Magnetic Response') + > + > #### Influence Map #### + > + > welllogs.inf = influence(out.PELT, method = "delete") + > InfluenceMap(cpts(out.PELT), welllogs.inf, data = welllogs, include.data = T, + + ylab = 'Nuclear-Magnetic\n Response') + Error: Can't find property @i + Execution halted + ``` + +# cheem + +
+ +* Version: 0.4.0.0 +* GitHub: https://github.com/nspyrison/cheem +* Source code: https://github.com/cran/cheem +* Date/Publication: 2023-11-08 21:30:02 UTC +* Number of recursive dependencies: 149 + +Run `revdepcheck::cloud_details(, "cheem")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(cheem) + -------------------------------------------------------- + cheem --- version 0.4.0.0 + Please share bugs, suggestions, and feature requests at: + https://github.com/nspyrison/cheem/issues/ + -------------------------------------------------------- + ... + 13. │ ├─utils::modifyList(x %||% list(), y %||% list(), ...) + 14. │ │ └─base::stopifnot(is.list(x), is.list(val)) + 15. │ └─x %||% list() + 16. ├─plotly::ggplotly(...) + 17. └─plotly:::ggplotly.ggplot(...) + 18. └─plotly::gg2list(...) + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 8 ] + Error: Test failures + Execution halted + ``` + +# chem16S + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/jedick/chem16S +* Source code: https://github.com/cran/chem16S +* Date/Publication: 2025-01-16 05:50:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "chem16S")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘metrics.Rmd’ using rmarkdown + ``` + +# chemodiv + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/hpetren/chemodiv +* Source code: https://github.com/cran/chemodiv +* Date/Publication: 2023-08-17 17:52:33 UTC +* Number of recursive dependencies: 168 + +Run `revdepcheck::cloud_details(, "chemodiv")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘chemodiv-Ex.R’ failed + The error most likely occurred in: + + > ### Name: molNetPlot + > ### Title: Plot molecular networks + > ### Aliases: molNetPlot + > + > ### ** Examples + > + > data(minimalSampData) + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─chemodiv::molNetPlot(minimalSampData, minimalMolNet) + 2. └─ggraph::geom_edge_link(ggplot2::aes(width = .data$weight), edge_color = "grey40") + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(chemodiv) + > + > test_check("chemodiv") + Accumulate the abundance along the tree branches... + Compute pairwise distances ... + Completed! + ... + 5. └─chemodiv::molNetPlot(testSampData, testMolNet$networkObject) + 6. └─ggraph::geom_edge_link(ggplot2::aes(width = .data$weight), edge_color = "grey40") + 7. └─ggplot2::layer(...) + 8. └─ggplot2:::validate_mapping(mapping, call_env) + 9. └─cli::cli_abort(msg, call = call) + 10. └─rlang::abort(...) + + [ FAIL 1 | WARN 1 | SKIP 3 | PASS 81 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘chemodiv-vignette.Rmd’ using rmarkdown + + Quitting from chemodiv-vignette.Rmd:332-337 [unnamed-chunk-17] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'chemodiv-vignette.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘chemodiv-vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘chemodiv-vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ChemoSpec + +
+ +* Version: 6.1.11 +* GitHub: https://github.com/bryanhanson/ChemoSpec +* Source code: https://github.com/cran/ChemoSpec +* Date/Publication: 2025-04-15 15:00:09 UTC +* Number of recursive dependencies: 164 + +Run `revdepcheck::cloud_details(, "ChemoSpec")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ChemoSpec-Ex.R’ failed + The error most likely occurred in: + + > ### Name: sgfSpectra + > ### Title: Apply Savitzky-Golay filters to a Spectra object + > ### Aliases: sgfSpectra + > ### Keywords: multivariate utilities + > + > ### ** Examples + > + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ChemoSpec.Rmd’ using rmarkdown + + Quitting from ChemoSpec.Rmd:410-415 [classPCA] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ChemoSpec.Rmd' failed with diagnostics: + Can't add `plot_annotation(myt)` to a object. + --- failed re-building ‘ChemoSpec.Rmd’ + + SUMMARY: processing the following file failed: + ‘ChemoSpec.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ChemoSpecUtils + +
+ +* Version: 1.0.5 +* GitHub: https://github.com/bryanhanson/ChemoSpecUtils +* Source code: https://github.com/cran/ChemoSpecUtils +* Date/Publication: 2025-04-12 15:30:04 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "ChemoSpecUtils")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ChemoSpecUtils-Ex.R’ failed + The error most likely occurred in: + + > ### Name: GraphicsOptions + > ### Title: Graphic Output Options in ChemoSpec and ChemoSpec2D + > ### Aliases: GraphicsOptions + > ### Keywords: utilities + > + > ### ** Examples + > + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# chessboard + +
+ +* Version: 0.1 +* GitHub: https://github.com/frbcesab/chessboard +* Source code: https://github.com/cran/chessboard +* Date/Publication: 2023-10-14 08:00:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "chessboard")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library("testthat") + > library("chessboard") + > + > test_check("chessboard") + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 1270 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + `expected`: TRUE + ── Failure ('test-gg_matrix.R:67:3'): gg_matrix() - Tests for success ────────── + "gg" %in% class(check) is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 1270 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘chess-pieces.Rmd’ using rmarkdown + + Quitting from chess-pieces.Rmd:110-130 [cb-pawn] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'chess-pieces.Rmd' failed with diagnostics: + Can't add `e2` to a object. + --- failed re-building ‘chess-pieces.Rmd’ + + --- re-building ‘chessboard.Rmd’ using rmarkdown + ``` + +# chevron + +
+ +* Version: 0.2.11 +* GitHub: https://github.com/insightsengineering/chevron +* Source code: https://github.com/cran/chevron +* Date/Publication: 2025-04-15 14:50:02 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "chevron")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘chevron-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fstg01_main + > ### Title: 'FSTG01' Subgroup Analysis of Best Overall Response. + > ### Aliases: fstg01_main fstg01_pre fstg01 + > ### Keywords: datasets + > + > ### ** Examples + > + ... + > proc_data <- log_filter( + + syn_data, + + PARAMCD == "BESRSPI" & ARM %in% c("A: Drug X", "B: Placebo"), "adrs" + + ) + > run(fstg01, proc_data, + + subgroups = c("SEX", "AGEGR1", "RACE"), + + conf_level = 0.90, dataset = "adrs" + + ) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + • mng01/run-mng01-with-combination-of-x-variables.svg + • mng01/run-mng01-with-custom-color-set.svg + • mng01/run-mng01-with-custom-line-type-set.svg + • mng01/run-mng01-with-custom-unnamed-color-set.svg + • mng01/run-mng01-with-custom-unnamed-line-type-set.svg + • mng01/run-mng01-with-jitter.svg + • mng01/run-mng01-with-numeric-x-variables.svg + • mng01/run-mng01-without-table.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘chevron.Rmd’ using rmarkdown + --- finished re-building ‘chevron.Rmd’ + + --- re-building ‘chevron_catalog.rmd’ using rmarkdown + + Quitting from chevron_catalog.rmd:1193-1199 [unnamed-chunk-95] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ... + --- failed re-building ‘chevron_catalog.rmd’ + + --- re-building ‘script_generator.Rmd’ using rmarkdown + --- finished re-building ‘script_generator.Rmd’ + + SUMMARY: processing the following file failed: + ‘chevron_catalog.rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# chillR + +
+ +* Version: 0.76 +* GitHub: NA +* Source code: https://github.com/cran/chillR +* Date/Publication: 2024-11-14 09:40:02 UTC +* Number of recursive dependencies: 135 + +Run `revdepcheck::cloud_details(, "chillR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘chillR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_scenarios + > ### Title: Plot historic and future scenarios for climate-related metrics + > ### (ggplot2 version) + > ### Aliases: plot_scenarios + > + > ### ** Examples + > + ... + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_list, ggplot2::ggplot))`(...) + 14. └─ggplot2::ggplot_add(o, plot, object_name) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +# choroplethr + +
+ +* Version: 4.0.0 +* GitHub: https://github.com/eastnile/choroplethr +* Source code: https://github.com/cran/choroplethr +* Date/Publication: 2025-04-11 22:10:08 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "choroplethr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘choroplethr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: country_choropleth + > ### Title: Create a country-level choropleth + > ### Aliases: country_choropleth + > + > ### ** Examples + > + > # demonstrate default options + ... + Backtrace: + ▆ + 1. └─choroplethr::country_choropleth(...) + 2. └─c$render() + 3. └─self$get_scale() + 4. └─ggplot2::scale_fill_continuous(...) + 5. └─ggplot2:::scale_backward_compatibility(...) + 6. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 7. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 10 marked UTF-8 strings + ``` + +# chronicle + +
+ +* Version: 0.3 +* GitHub: NA +* Source code: https://github.com/cran/chronicle +* Date/Publication: 2021-06-25 05:00:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "chronicle")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘chronicle-Ex.R’ failed + The error most likely occurred in: + + > ### Name: make_barplot + > ### Title: Create a bar plot from a data frame through ggplotly + > ### Aliases: make_barplot + > + > ### ** Examples + > + > make_barplot(dt = iris, bars = 'Species', value = 'Sepal.Length') + Error in pm[[2]] : subscript out of bounds + Calls: make_barplot -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘chronicle.Rmd’ using rmarkdown + + Quitting from chronicle.Rmd:37-67 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'chronicle.Rmd' failed with diagnostics: + ... + ℹ In index: 1. + Caused by error in `pm[[2]]`: + ! subscript out of bounds + --- failed re-building ‘chronicle.Rmd’ + + SUMMARY: processing the following file failed: + ‘chronicle.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘DT’ ‘dplyr’ ‘prettydoc’ ‘rmdformats’ ‘skimr’ + All declared Imports should be used. + ``` + +# CINNA + +
+ +* Version: 1.2.2 +* GitHub: NA +* Source code: https://github.com/cran/CINNA +* Date/Publication: 2023-08-08 16:40:02 UTC +* Number of recursive dependencies: 133 + +Run `revdepcheck::cloud_details(, "CINNA")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘CINNA.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘circlize’ ‘utils’ + All declared Imports should be used. + ``` + +# circhelp + +
+ +* Version: 1.1 +* GitHub: https://github.com/achetverikov/circhelp +* Source code: https://github.com/cran/circhelp +* Date/Publication: 2024-07-04 17:10:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "circhelp")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘circhelp-Ex.R’ failed + The error most likely occurred in: + + > ### Name: circ_loess + > ### Title: An implementation of circular-linear locally-weighted regression + > ### (LOESS) + > ### Aliases: circ_loess + > + > ### ** Examples + > + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘cardinal_biases.Rmd’ using rmarkdown + ``` + +# circumplex + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/jmgirard/circumplex +* Source code: https://github.com/cran/circumplex +* Date/Publication: 2024-10-28 04:30:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "circumplex")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(circumplex) + > + > test_check("circumplex") + [ FAIL 4 | WARN 8 | SKIP 20 | PASS 97 ] + + ══ Skipped tests (20) ══════════════════════════════════════════════════════════ + ... + [ FAIL 4 | WARN 8 | SKIP 20 | PASS 97 ] + Deleting unused snapshots: + • ssm_plot/many-circle-repel.svg + • ssm_plot/many-curve-plots.svg + • ssm_plot/measure-contrast-circle-ssm.svg + • ssm_plot/measure-contrast-curve-ssm.svg + • ssm_plot/single-group-mean-ssm-no-palette.svg + • ssm_plot/single-group-mean-ssm-with-labels.svg + Error: Test failures + Execution halted + ``` + +# CKMRpop + +
+ +* Version: 0.1.3 +* GitHub: NA +* Source code: https://github.com/cran/CKMRpop +* Date/Publication: 2021-07-17 10:00:06 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "CKMRpop")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘CKMRpop-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_conn_comps + > ### Title: plot the graph showing the connected components + > ### Aliases: plot_conn_comps + > + > ### ** Examples + > + > # get a Pairs tibble from the stored data + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─CKMRpop::plot_conn_comps(Pairs) + 2. └─ggraph::geom_edge_link(aes(colour = `dom_relat-max_hit`)) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘about_spip.Rmd’ using rmarkdown + --- finished re-building ‘about_spip.Rmd’ + + --- re-building ‘simple-example-with-migration.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.8Mb + sub-directories of 1Mb or more: + data 2.0Mb + doc 3.6Mb + help 1.0Mb + libs 2.0Mb + ``` + +# classmap + +
+ +* Version: 1.2.4 +* GitHub: NA +* Source code: https://github.com/cran/classmap +* Date/Publication: 2025-05-13 22:00:02 UTC +* Number of recursive dependencies: 133 + +Run `revdepcheck::cloud_details(, "classmap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘classmap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: vcr.forest.newdata + > ### Title: Prepare for visualization of a random forest classification on + > ### new data. + > ### Aliases: vcr.forest.newdata + > + > ### ** Examples + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking whether package ‘classmap’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::element’ by ‘e1071::element’ when loading ‘classmap’ + See ‘/tmp/workdir/classmap/new/classmap.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 9 marked UTF-8 strings + ``` + +# clifro + +
+ +* Version: 3.2-5 +* GitHub: https://github.com/ropensci/clifro +* Source code: https://github.com/cran/clifro +* Date/Publication: 2021-05-24 05:50:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "clifro")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > library(testthat) + > library(clifro) + > + > test_check("clifro") + [ FAIL 4 | WARN 1 | SKIP 4 | PASS 7 ] + + ... + ── Failure ('test-windrose.R:10:3'): windrose ────────────────────────────────── + tt$mapping inherits from `'ggplot2::mapping'/'gg'/'S7_object'` not `'character'`. + ── Failure ('test-windrose.R:11:3'): windrose ────────────────────────────────── + tt$theme inherits from `'ggplot2::theme'/'gg'/'S7_object'` not `'character'`. + ── Failure ('test-windrose.R:15:3'): windrose ────────────────────────────────── + tt$labels inherits from `'ggplot2::labels'/'gg'/'S7_object'` not `'character'`. + + [ FAIL 4 | WARN 1 | SKIP 4 | PASS 7 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) cf_save_kml.Rd:68: Lost braces + 68 | \code{\link{cf_find_station}} and code{vignette("choose-station")} for + | ^ + ``` + +# climaemet + +
+ +* Version: 1.4.1 +* GitHub: https://github.com/rOpenSpain/climaemet +* Source code: https://github.com/cran/climaemet +* Date/Publication: 2025-03-25 22:40:08 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "climaemet")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘climaemet-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggclimat_walter_lieth + > ### Title: Walter and Lieth climatic diagram on 'ggplot2' + > ### Aliases: ggclimat_walter_lieth + > + > ### ** Examples + > + > + ... + + per = "1981-2010", + + est = "Zaragoza Airport" + + ) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the climaemet package. + Please report the issue at . + Error: object properties are invalid: + - @margin must be or , not S3 + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 8737 marked UTF-8 strings + ``` + +# climwin + +
+ +* Version: 1.2.3 +* GitHub: https://github.com/LiamDBailey/climwin +* Source code: https://github.com/cran/climwin +* Date/Publication: 2020-05-26 09:50:06 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "climwin")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(climwin) + Loading required package: ggplot2 + Loading required package: gridExtra + Loading required package: Matrix + > + > test_check("climwin") + ... + `expected`: TRUE + ── Failure ('testplotwin.R:15:3'): plotwin produces a graph ──────────────────── + attr(test, "class")[1] == "gg" is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 7 | WARN 762 | SKIP 3 | PASS 790 ] + Error: Test failures + Execution halted + ``` + +# clinDataReview + +
+ +* Version: 1.6.2 +* GitHub: https://github.com/openanalytics/clinDataReview +* Source code: https://github.com/cran/clinDataReview +* Date/Publication: 2025-04-11 22:10:02 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "clinDataReview")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘clinDataReview-Ex.R’ failed + The error most likely occurred in: + + > ### Name: scatterplotClinData + > ### Title: Scatterplot of variables of interest for clinical data + > ### visualization. + > ### Aliases: scatterplotClinData + > + > ### ** Examples + > + ... + > scatterplotClinData( + + data = dataPlot, + + xVar = "ADY", + + yVar = "LBSTRESN", + + aesPointVar = list(color = "TRTP", fill = "TRTP"), + + aesLineVar = list(group = "USUBJID", color = "TRTP"), + + labelVars = labelVars + + ) + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(gg)@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(clinDataReview) + > + > test_check("clinDataReview") + adding: report.html (deflated 63%) + adding: report_dependencies136c5f3411c8/ (stored 0%) + adding: report_dependencies136c5f3411c8/file136c600e3438.html (deflated 8%) + ... + ▆ + 1. └─clinDataReview::scatterplotClinData(...) at test_scatterplotClinData.R:1001:3 + 2. └─clinDataReview:::getSizePlot(...) + 3. └─clinDataReview:::getDimGgplot(gg = gg) + 4. ├─ggplot_build(gg)$layout + 5. └─S7:::`$.S7_object`(ggplot_build(gg), "layout") + + [ FAIL 31 | WARN 0 | SKIP 31 | PASS 466 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘clinDataReview-dataPreprocessing.Rmd’ using rmarkdown + --- finished re-building ‘clinDataReview-dataPreprocessing.Rmd’ + + --- re-building ‘clinDataReview-dataVisualization.Rmd’ using rmarkdown + + Quitting from clinDataReview-dataVisualization.Rmd:169-211 [timeProfiles] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ... + --- failed re-building ‘clinDataReview-dataVisualization.Rmd’ + + --- re-building ‘clinDataReview-reporting.Rmd’ using rmarkdown + --- finished re-building ‘clinDataReview-reporting.Rmd’ + + SUMMARY: processing the following file failed: + ‘clinDataReview-dataVisualization.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + doc 4.3Mb + ``` + +# clinUtils + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/openanalytics/clinUtils +* Source code: https://github.com/cran/clinUtils +* Date/Publication: 2024-05-17 14:50:06 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "clinUtils")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘clinUtils-vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.7Mb + sub-directories of 1Mb or more: + doc 6.5Mb + ``` + +# clockSim + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/yeyuan98/clockSim +* Source code: https://github.com/cran/clockSim +* Date/Publication: 2025-04-22 20:10:01 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "clockSim")` for more info + +
+ +## Newly broken + +* checking whether package ‘clockSim’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/clockSim/new/clockSim.Rcheck/00install.out’ for details. + ``` + +# clugenr + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/clugen/clugenr +* Source code: https://github.com/cran/clugenr +* Date/Publication: 2024-01-11 12:20:02 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "clugenr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘dev.Rmd’ using rmarkdown + ``` + +# ClustAssess + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/Core-Bioinformatics/ClustAssess +* Source code: https://github.com/cran/ClustAssess +* Date/Publication: 2025-01-31 22:40:06 UTC +* Number of recursive dependencies: 251 + +Run `revdepcheck::cloud_details(, "ClustAssess")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ClustAssess-Ex.R’ failed + The error most likely occurred in: + + > ### Name: marker_overlap + > ### Title: Cell-Wise Marker Gene Overlap + > ### Aliases: marker_overlap + > + > ### ** Examples + > + > suppressWarnings({ + ... + + Attaching package: ‘SeuratObject’ + + The following objects are masked from ‘package:base’: + + intersect, t + + Error in `&.default`(plot, scale_color_gradientn(colors = cols, limits = c(min.feature.value, : + operations are possible only for numeric, logical or complex types + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + R 1.5Mb + libs 3.7Mb + ``` + +# clustcurv + +
+ +* Version: 2.0.2 +* GitHub: https://github.com/noramvillanueva/clustcurv +* Source code: https://github.com/cran/clustcurv +* Date/Publication: 2024-10-25 08:20:07 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "clustcurv")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘clustcurv.Rmd’ using rmarkdown + + Quitting from clustcurv.Rmd:92-94 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'clustcurv.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘clustcurv.Rmd’ + + SUMMARY: processing the following file failed: + ‘clustcurv.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ClustImpute + +
+ +* Version: 0.2.4 +* GitHub: NA +* Source code: https://github.com/cran/ClustImpute +* Date/Publication: 2021-05-31 07:40:11 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "ClustImpute")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ClustImpute) + > + > test_check("ClustImpute") + [ FAIL 3 | WARN 4 | SKIP 0 | PASS 32 ] + + ... + y[1]: "ggplot" + ── Failure ('test-plot_fun.R:21:3'): Plot returns a ggplot2 object ───────────── + class(box_plot)[2] not equal to "ggplot". + 1/1 mismatches + x[1]: "ggplot2::ggplot" + y[1]: "ggplot" + + [ FAIL 3 | WARN 4 | SKIP 0 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘Example_on_simulated_data.Rmd’ using rmarkdown + + Quitting from Example_on_simulated_data.Rmd:48-53 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + --- + Backtrace: + ... + l.6 \usepackage + {Sweave}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘description_of_algorithm.Rnw’ + + SUMMARY: processing the following files failed: + ‘Example_on_simulated_data.Rmd’ ‘description_of_algorithm.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# clustNet + +
+ +* Version: 1.2.0 +* GitHub: NA +* Source code: https://github.com/cran/clustNet +* Date/Publication: 2024-02-14 15:20:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "clustNet")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘clustNet.Rmd’ using rmarkdown + + Quitting from clustNet.Rmd:40-50 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'clustNet.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘clustNet.Rmd’ + + SUMMARY: processing the following file failed: + ‘clustNet.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# clustrd + +
+ +* Version: 1.4.0 +* GitHub: NA +* Source code: https://github.com/cran/clustrd +* Date/Publication: 2022-07-16 23:20:06 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "clustrd")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘clustrd-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.clusmca + > ### Title: Plotting function for 'clusmca()' output. + > ### Aliases: plot.clusmca + > + > ### ** Examples + > + > data("mybond") + ... + Warning in fortify(data, ...) : Arguments in `...` must be used. + ✖ Problematic argument: + • labels = lbls + ℹ Did you misspell an argument name? + Warning in fortify(data, ...) : Arguments in `...` must be used. + ✖ Problematic argument: + • labels = lbls + ℹ Did you misspell an argument name? + Error: C stack usage 9962164 is too close to the limit + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) global_bootclus.Rd:38: Lost braces; missing escapes or markup? + 38 | \emph{Step 1. Resampling:} Draw bootstrap samples S_i and T_i of size \emph{n} from the data and use the original data, X, as evaluation set E_i = X. Apply the clustering method of choice to S_i and T_i and obtain C^{S_i} and C^{T_i}. + | ^ + checkRd: (-1) global_bootclus.Rd:38: Lost braces; missing escapes or markup? + 38 | \emph{Step 1. Resampling:} Draw bootstrap samples S_i and T_i of size \emph{n} from the data and use the original data, X, as evaluation set E_i = X. Apply the clustering method of choice to S_i and T_i and obtain C^{S_i} and C^{T_i}. + | ^ + checkRd: (-1) global_bootclus.Rd:40: Lost braces; missing escapes or markup? + 40 | \emph{Step 2. Mapping:} Assign each observation x_i to the closest centers of C^{S_i} and C^{T_i} using Euclidean distance, resulting in partitions C^{XS_i} and C^{XT_i}, where C^{XS_i} is the partition of the original data, X, predicted from clustering bootstrap sample S_i (same for T_i and C^{XT_i}). + | ^ + checkRd: (-1) global_bootclus.Rd:40: Lost braces; missing escapes or markup? + ... + | ^ + checkRd: (-1) local_bootclus.Rd:41: Lost braces; missing escapes or markup? + 41 | \emph{Step 3. Evaluation}: Obtain the maximum Jaccard agreement between each original cluster C_k and each one of the two bootstrap clusters, C_^k'{XS_i} and C_^k'{XT_i} as measure of agreement and stability, and take the average of each pair. + | ^ + checkRd: (-1) local_bootclus.Rd:54: Lost braces; missing escapes or markup? + 54 | \item{clust1}{Partitions, C^{XS_i} of the original data, X, predicted from clustering bootstrap sample S_i (see Details)} + | ^ + checkRd: (-1) local_bootclus.Rd:55: Lost braces; missing escapes or markup? + 55 | \item{clust2}{Partitions, C^{XT_i} of the original data, X, predicted from clustering bootstrap sample T_i (see Details)} + | ^ + ``` + +# clustree + +
+ +* Version: 0.5.1 +* GitHub: https://github.com/lazappi/clustree +* Source code: https://github.com/cran/clustree +* Date/Publication: 2023-11-05 19:10:02 UTC +* Number of recursive dependencies: 190 + +Run `revdepcheck::cloud_details(, "clustree")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘clustree-Ex.R’ failed + The error most likely occurred in: + + > ### Name: clustree + > ### Title: Plot a clustering tree + > ### Aliases: clustree clustree.matrix clustree.data.frame + > ### clustree.SingleCellExperiment clustree.seurat clustree.Seurat + > + > ### ** Examples + > + ... + 1. ├─clustree::clustree(nba_clusts, prefix = "K") + 2. └─clustree:::clustree.data.frame(nba_clusts, prefix = "K") + 3. ├─clustree::clustree(...) + 4. └─clustree:::clustree.matrix(...) + 5. └─ggraph::geom_edge_link(...) + 6. └─ggplot2::layer(...) + 7. └─ggplot2:::validate_mapping(mapping, call_env) + 8. └─cli::cli_abort(msg, call = call) + 9. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(clustree) + Loading required package: ggraph + Loading required package: ggplot2 + > + > test_check("clustree") + ... + 7. └─clustree:::clustree.matrix(...) + 8. └─ggraph::geom_edge_link(...) + 9. └─ggplot2::layer(...) + 10. └─ggplot2:::validate_mapping(mapping, call_env) + 11. └─cli::cli_abort(msg, call = call) + 12. └─rlang::abort(...) + + [ FAIL 38 | WARN 0 | SKIP 0 | PASS 39 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘clustree.Rmd’ using rmarkdown + + Quitting from clustree.Rmd:80-82 [nba-plot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'clustree.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘clustree.Rmd’ + + SUMMARY: processing the following file failed: + ‘clustree.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# clustringr + +
+ +* Version: 1.0 +* GitHub: NA +* Source code: https://github.com/cran/clustringr +* Date/Publication: 2019-03-30 16:10:03 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "clustringr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘clustringr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: cluster_plot + > ### Title: Plot string clusters as graph. + > ### Aliases: cluster_plot + > + > ### ** Examples + > + > s_vec <- c("alcool","alcohol","alcoholic","brandy","brandie","cachaça") + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─clustringr::cluster_plot(s_clust, min_cluster_size = 1) + 2. └─ggraph::geom_node_point(aes(color = cluster), size = 2) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘stringi’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 5626 marked UTF-8 strings + ``` + +# clustTMB + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/Andrea-Havron/clustTMB +* Source code: https://github.com/cran/clustTMB +* Date/Publication: 2024-10-14 11:50:46 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "clustTMB")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘CovarianceStructure.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 82.4Mb + sub-directories of 1Mb or more: + libs 81.9Mb + ``` + +# cmcR + +
+ +* Version: 0.1.11 +* GitHub: NA +* Source code: https://github.com/cran/cmcR +* Date/Publication: 2022-12-10 14:00:02 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "cmcR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(cmcR) + > + > test_check("cmcR",reporter = SummaryReporter) + adding: bindata/ (stored 0%) + adding: bindata/data.bin (deflated 58%) + adding: main.xml (deflated 62%) + ... + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + + ══ DONE ════════════════════════════════════════════════════════════════════════ + No one is perfect! + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.5Mb + sub-directories of 1Mb or more: + data 2.5Mb + doc 2.3Mb + ``` + +# cnmap + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/PanfengZhang/cnmap +* Source code: https://github.com/cran/cnmap +* Date/Publication: 2024-04-02 12:42:06 UTC +* Number of recursive dependencies: 59 + +Run `revdepcheck::cloud_details(, "cnmap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cnmap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: getMap + > ### Title: China Map Data from AutoNavi Map + > ### Aliases: getMap + > + > ### ** Examples + > + > library(cnmap) + > + > map1 <- getMap(code = "110000") # get the map data of Beijing City + Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : + package tibble not available: install first? + Calls: getMap ... st_read -> st_read.character -> process_cpl_read_ogr + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Introduction.Rmd’ using rmarkdown + + Quitting from Introduction.Rmd:28-35 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `process_cpl_read_ogr()`: + ! package tibble not available: install first? + --- + Backtrace: + ... + + Error: processing vignette 'Introduction.Rmd' failed with diagnostics: + package tibble not available: install first? + --- failed re-building ‘Introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘Introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# CNVreg + +
+ +* Version: 1.0 +* GitHub: NA +* Source code: https://github.com/cran/CNVreg +* Date/Publication: 2025-03-10 16:50:21 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "CNVreg")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘CNVReg_vig.Rmd’ using rmarkdown + + Quitting from CNVReg_vig.Rmd:322-378 [unnamed-chunk-17] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'CNVReg_vig.Rmd' failed with diagnostics: + Can't add `e2` to a object. + --- failed re-building ‘CNVReg_vig.Rmd’ + + SUMMARY: processing the following file failed: + ‘CNVReg_vig.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# coat + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/coat +* Date/Publication: 2023-07-11 15:30:09 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "coat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘coat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: print.coat + > ### Title: Methods for Conditional Method Agreement Trees (COAT) + > ### Aliases: print.coat coef.coat plot.coat node_baplot autoplot.coat + > + > ### ** Examples + > + > ## Don't show: + ... + ▆ + 1. ├─ggplot2::autoplot(tr) + 2. └─coat:::autoplot.coat(tr) + 3. └─ggparty::ggparty(object, terminal_space = 0.5) + 4. └─ggplot2::ggplot(data = plot_data, mapping = mapping) + 5. ├─S7::S7_dispatch() + 6. └─ggplot2 (local) `method(ggplot2, class_any)`(data = ``, mapping = ``, ..., environment = ``) + 7. └─cli::cli_abort(...) + 8. └─rlang::abort(...) + Execution halted + ``` + +# cocktailApp + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/shabbychef/cocktailApp +* Source code: https://github.com/cran/cocktailApp +* Date/Publication: 2023-07-19 13:40:09 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "cocktailApp")` for more info + +
+ +## Newly broken + +* checking whether package ‘cocktailApp’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 14729 marked UTF-8 strings + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘cocktailApp’ ... +** package ‘cocktailApp’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: .onLoad failed in loadNamespace() for 'ggtern', details: + call: NULL + error: object properties are invalid: +- @lineend must be or , not S3 +Execution halted +ERROR: lazy loading failed for package ‘cocktailApp’ +* removing ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/cocktailApp’ + + +``` +### CRAN + +``` +* installing *source* package ‘cocktailApp’ ... +** package ‘cocktailApp’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (cocktailApp) + + +``` +# coda.plot + +
+ +* Version: 0.1.9 +* GitHub: NA +* Source code: https://github.com/cran/coda.plot +* Date/Publication: 2025-04-20 21:30:02 UTC +* Number of recursive dependencies: 42 + +Run `revdepcheck::cloud_details(, "coda.plot")` for more info + +
+ +## Newly broken + +* checking whether package ‘coda.plot’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘coda.plot’ ... +** package ‘coda.plot’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error: .onLoad failed in loadNamespace() for 'ggtern', details: + call: NULL + error: object properties are invalid: +- @lineend must be or , not S3 +Execution halted +ERROR: lazy loading failed for package ‘coda.plot’ +* removing ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/coda.plot’ + + +``` +### CRAN + +``` +* installing *source* package ‘coda.plot’ ... +** package ‘coda.plot’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (coda.plot) + + +``` +# coda4microbiome + +
+ +* Version: 0.2.4 +* GitHub: https://github.com/malucalle/coda4microbiome +* Source code: https://github.com/cran/coda4microbiome +* Date/Publication: 2024-07-17 15:50:02 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "coda4microbiome")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘coda4microbiome-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_survcurves + > ### Title: plot_survcurves + > ### Aliases: plot_survcurves + > + > ### ** Examples + > + > + ... + 11. └─base_ops[[.Generic]](e1, e2) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. └─ggplot2::ggplot_add(object, p, objectname) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. └─rlang::abort(...) + Execution halted + ``` + +# cogmapr + +
+ +* Version: 0.9.3 +* GitHub: NA +* Source code: https://github.com/cran/cogmapr +* Date/Publication: 2022-01-04 15:40:07 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "cogmapr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cogmapr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggCMap + > ### Title: Plot a social cognitive map using ggplot2 + > ### Aliases: ggCMap + > + > ### ** Examples + > + > project_name <- "a_new_project" + ... + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. ├─rlang::exec(scale, !!!args) + 5. └─ggplot2 (local) ``(...) + 6. ├─ggplot2::discrete_scale(...) + 7. │ └─ggplot2::ggproto(...) + 8. │ └─rlang::list2(...) + 9. └─ggplot2:::pal_qualitative(type = type) + 10. └─ggplot2:::stop_input_type(type, "a character vector or list of character vectors") + 11. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +# CohortCharacteristics + +
+ +* Version: 0.5.1 +* GitHub: https://github.com/darwin-eu/CohortCharacteristics +* Source code: https://github.com/cran/CohortCharacteristics +* Date/Publication: 2025-03-27 18:40:07 UTC +* Number of recursive dependencies: 186 + +Run `revdepcheck::cloud_details(, "CohortCharacteristics")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + ── Error ('test-plotCohortTiming.R:232:3'): plotCohortTiming, density x axis ─── + Error in `eval(code, test_env)`: object 'p' not found + Backtrace: + ▆ + 1. └─ggplot2::ggplot_build(p) at test-plotCohortTiming.R:232:3 + 2. └─S7::S7_inherits(plot) + + [ FAIL 2 | WARN 0 | SKIP 18 | PASS 213 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘summarise_characteristics.Rmd’ using rmarkdown + trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' + Content type 'application/zip' length 6754786 bytes (6.4 MB) + ================================================== + downloaded 6.4 MB + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + doc 3.5Mb + help 2.0Mb + ``` + +# CohortPlat + +
+ +* Version: 1.0.5 +* GitHub: NA +* Source code: https://github.com/cran/CohortPlat +* Date/Publication: 2022-02-14 09:30:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "CohortPlat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘CohortPlat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_trial + > ### Title: Plots the cohort trial study overview given stage data. + > ### Aliases: plot_trial + > + > ### ** Examples + > + > + ... + + stage_data = stage_data, cohort_random = cohort_random, cohorts_max = cohorts_max, + + sr_drugs_pos = sr_drugs_pos, target_rr = target_rr, sharing_type = sharing_type, + + safety_prob = safety_prob, Bayes_Sup = Bayes_Sup, prob_rr_transform = prob_rr_transform, + + cohort_offset = cohort_offset, Bayes_Fut = Bayes_Fut, sr_first_pos = sr_first_pos + + ) + > + > plot_trial(res_list, unit = "n") + Error in pm[[2]] : subscript out of bounds + Calls: plot_trial -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘my-vignette.Rmd’ using rmarkdown + + Quitting from my-vignette.Rmd:1042-1073 [unnamed-chunk-20] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'my-vignette.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘my-vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘my-vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# COINr + +
+ +* Version: 1.1.14 +* GitHub: https://github.com/bluefoxr/COINr +* Source code: https://github.com/cran/COINr +* Date/Publication: 2024-05-21 16:00:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "COINr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘COINr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_bar + > ### Title: Bar chart + > ### Aliases: plot_bar + > + > ### ** Examples + > + > # build example coin + > coin <- build_example_coin(up_to = "new_coin", quietly = TRUE) + > + > # bar plot of CO2 by GDP per capita group + > plot_bar(coin, dset = "Raw", iCode = "CO2", + + by_group = "GDPpc_group", axes_label = "iName") + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘adjustments.Rmd’ using rmarkdown + --- finished re-building ‘adjustments.Rmd’ + + --- re-building ‘aggregate.Rmd’ using rmarkdown + --- finished re-building ‘aggregate.Rmd’ + + --- re-building ‘analysis.Rmd’ using rmarkdown + --- finished re-building ‘analysis.Rmd’ + + --- re-building ‘coins.Rmd’ using rmarkdown + --- finished re-building ‘coins.Rmd’ + + --- re-building ‘data_selection.Rmd’ using rmarkdown + --- finished re-building ‘data_selection.Rmd’ + + --- re-building ‘denomination.Rmd’ using rmarkdown + ``` + +# colorrepel + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/raysinensis/color_repel +* Source code: https://github.com/cran/colorrepel +* Date/Publication: 2025-01-19 04:50:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "colorrepel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘colorrepel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: color_repel + > ### Title: Reorder ggplot colors to maximize color differences in space + > ### Aliases: color_repel + > + > ### ** Examples + > + > a <- ggplot2::ggplot(ggplot2::mpg, ggplot2::aes(displ, hwy)) + + + ggplot2::geom_point(ggplot2::aes(color = as.factor(cyl))) + > new_colors <- color_repel(a) + Error: Can't get S7 properties with `$`. Did you mean `g2@data`? + Execution halted + ``` + +# comparer + +
+ +* Version: 0.2.4 +* GitHub: https://github.com/CollinErickson/comparer +* Source code: https://github.com/cran/comparer +* Date/Publication: 2024-10-02 22:50:03 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "comparer")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(comparer) + Loading required package: GauPro + Loading required package: mixopt + Loading required package: dplyr + + Attaching package: 'dplyr' + ... + ── Error ('test_hype.R:296:1'): discrete params ──────────────────────────────── + + Error: C stack usage 9963156 is too close to the limit + ── Error ('test_hype.R:331:1'): hype with all params type ────────────────────── + + Error: C stack usage 9963028 is too close to the limit + + [ FAIL 9 | WARN 0 | SKIP 0 | PASS 396 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘DiceOptim’ + ``` + +# conquestr + +
+ +* Version: 1.5.1 +* GitHub: NA +* Source code: https://github.com/cran/conquestr +* Date/Publication: 2025-05-18 07:50:02 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "conquestr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(conquestr) + > + > test_check("conquestr") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 25 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-ConQuestRout.R:10:3'): Rout file is of correct type ────────── + `myRoutPlot` has type 'object', not 'list'. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 25 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘data-cleaning-functions-in-conquestr.Rmd’ using rmarkdown + --- finished re-building ‘data-cleaning-functions-in-conquestr.Rmd’ + + --- re-building ‘generateResponses.Rmd’ using rmarkdown + ``` + +# conserveR + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/azizka/conserveR +* Source code: https://github.com/cran/conserveR +* Date/Publication: 2021-08-02 09:10:06 UTC +* Number of recursive dependencies: 50 + +Run `revdepcheck::cloud_details(, "conserveR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘conserveR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: map_selection + > ### Title: Map Selected Methods to Context + > ### Aliases: map_selection + > + > ### ** Examples + > + > data(edge) + > map_selection(edge) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the conserveR package. + Please report the issue at . + Error: C stack usage 9963092 is too close to the limit + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘scales’ ‘sna’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 244 marked UTF-8 strings + ``` + +# constructive + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/cynkra/constructive +* Source code: https://github.com/cran/constructive +* Date/Publication: 2025-01-10 14:10:01 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "constructive")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(constructive) + > + > test_check("constructive") + [ FAIL 6 | WARN 0 | SKIP 113 | PASS 24 ] + + ══ Skipped tests (113) ═════════════════════════════════════════════════════════ + ... + 46. │ └─constructive:::.cstr_construct.environment(x, ...) + 47. │ ├─base::structure(NA, class = opts$constructor) + 48. │ └─opts$constructor + 49. └─rlang (local) ``(``) + 50. └─handlers[[1L]](cnd) + 51. └─rlang::abort(...) + + [ FAIL 6 | WARN 0 | SKIP 113 | PASS 24 ] + Error: Test failures + Execution halted + ``` + +# ContourFunctions + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/CollinErickson/ContourFunctions +* Source code: https://github.com/cran/ContourFunctions +* Date/Publication: 2024-09-10 15:00:12 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "ContourFunctions")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ContourFunctions) + Loading required package: ggplot2 + Loading required package: lhs + Loading required package: rmarkdown + > + > test_check("ContourFunctions") + ... + ── Failure ('test-gcf_grid.R:62:3'): gcf ─────────────────────────────────────── + `p2` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-gcf_grid.R:70:3'): gcf ─────────────────────────────────────── + `p3` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-gcf_grid.R:71:3'): gcf ─────────────────────────────────────── + `p4` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 9 | WARN 0 | SKIP 0 | PASS 54 ] + Error: Test failures + Execution halted + ``` + +# contsurvplot + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/RobinDenz1/contsurvplot +* Source code: https://github.com/cran/contsurvplot +* Date/Publication: 2023-08-15 08:00:03 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "contsurvplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘contsurvplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_surv_at_t + > ### Title: Plot the Survival Probability or CIF at a Fixed Point in Time as + > ### a Function of a Continuous Variable + > ### Aliases: plot_surv_at_t + > + > ### ** Examples + > + ... + > + > # plot effect of age on survival at t=2000 + > plot_surv_at_t(time="futime", + + status="status", + + variable="age", + + data=nafld1, + + model=model, + + t=2000) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(contsurvplot) + Please cite as: + + Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630. + > library(survival) + > library(testthat) + > + ... + • plot_surv_quantiles/plot-with-group.svg + • plot_surv_rmst/plot-change-horizon.svg + • plot_surv_rmst/plot-defaults.svg + • plot_surv_rmst/plot-with-group.svg + • plot_surv_rmtl/plot-change-horizon.svg + • plot_surv_rmtl/plot-defaults.svg + • plot_surv_rmtl/plot-lots-of-stuff.svg + • plot_surv_rmtl/plot-with-group.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction.Rmd’ using rmarkdown + + Quitting from introduction.Rmd:110-117 [unnamed-chunk-8] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + + Error: processing vignette 'introduction.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# convergEU + +
+ +* Version: 0.7.3.2 +* GitHub: NA +* Source code: https://github.com/cran/convergEU +* Date/Publication: 2024-01-21 22:12:54 UTC +* Number of recursive dependencies: 203 + +Run `revdepcheck::cloud_details(, "convergEU")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > + > + > test_check("convergEU") + Loading required package: convergEU + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 2000 ] + + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_demea_change.R:51:5'): With without selecountries ─────────── + aux %in% class(res$res$res_graph) is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 2000 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1 marked UTF-8 string + ``` + +# CooccurrenceAffinity + +
+ +* Version: 1.0 +* GitHub: https://github.com/kpmainali/CooccurrenceAffinity +* Source code: https://github.com/cran/CooccurrenceAffinity +* Date/Publication: 2023-05-03 18:45:42 UTC +* Number of recursive dependencies: 36 + +Run `revdepcheck::cloud_details(, "CooccurrenceAffinity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘CooccurrenceAffinity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: CovrgPlot + > ### Title: Coverage probabilities of the confidence intervals, calculated + > ### and plotted + > ### Aliases: CovrgPlot + > ### Keywords: internal + > + > ### ** Examples + > + > # True coverage probability by the 95% Confidence Interval + > CovrgPlot(marg = c(50,70,150), lev = 0.95) + `stat_bin()` using `bins = 30`. Pick better value `binwidth`. + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(hp)@data`? + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) CovrgPlot.Rd:28: Lost braces; missing escapes or markup? + 28 | \item{plotCI}{a vector of up to 4 numbers out of the set {1,2,3,4}, corresponding to which + | ^ + ``` + +# CoreMicrobiomeR + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/CoreMicrobiomeR +* Date/Publication: 2024-04-03 20:03:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "CoreMicrobiomeR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘CoreMicrobiomeR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: group_bar_plots + > ### Title: Grouped Bar Plots Based on Sample Size + > ### Aliases: group_bar_plots + > + > ### ** Examples + > + > #To run input data + ... + + top_percentage = 10 # Adjust the percentage as needed for core/non-core OTUs + + ) + Warning encountered during diversity analysis:you have empty rows: their dissimilarities may be + meaningless in method “bray” + > #To run grouped bar plot function + > plot_group_bar <- group_bar_plots(core_1$final_otu_table_bef_filter, + + core_1$final_otu_aft_filter, 10) + Error in pm[[2]] : subscript out of bounds + Calls: group_bar_plots -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# correlationfunnel + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/business-science/correlationfunnel +* Source code: https://github.com/cran/correlationfunnel +* Date/Publication: 2020-06-09 04:40:03 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "correlationfunnel")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + + ... + ▆ + 1. ├─correlationfunnel::plot_correlation_funnel(...) at test-plot_correlation_funnel.R:23:1 + 2. └─correlationfunnel:::plot_correlation_funnel.data.frame(...) + 3. ├─plotly::ggplotly(g, tooltip = "text") + 4. └─plotly:::ggplotly.ggplot(g, tooltip = "text") + 5. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 3 | SKIP 0 | PASS 17 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘utils’ + All declared Imports should be used. + ``` + +# Correlplot + +
+ +* Version: 1.1.0 +* GitHub: NA +* Source code: https://github.com/cran/Correlplot +* Date/Publication: 2024-01-23 15:12:52 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "Correlplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Correlplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggcorrelogram + > ### Title: Create a correlogram as a ggplot object. + > ### Aliases: ggcorrelogram + > ### Keywords: hplot + > + > ### ** Examples + > + > set.seed(123) + > X <- matrix(rnorm(90),ncol=3) + > R <- cor(X) + > angles <- ggcorrelogram(R) + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘CorrelplotManual.Rmd’ using rmarkdown + ``` + +# corrgrapher + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/ModelOriented/corrgrapher +* Source code: https://github.com/cran/corrgrapher +* Date/Publication: 2020-10-13 23:50:27 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "corrgrapher")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(corrgrapher) + > + > test_check("corrgrapher") + Welcome to DALEX (version: 2.4.3). + Find examples and detailed introduction at: http://ema.drwhy.ai/ + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_utils.R:18:3'): plot_distibution working properly ──────────── + plot_distribution(dragons$height, "height") inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_utils.R:19:3'): plot_distibution working properly ──────────── + plot_distribution(dragons$colour, "colour") inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 97 ] + Error: Test failures + Execution halted + ``` + +# corrViz + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/corrViz +* Date/Publication: 2023-06-30 11:40:07 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "corrViz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘corrViz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: animSolar + > ### Title: animSolar + > ### Aliases: animSolar + > + > ### ** Examples + > + > cm <- cor(mtcars) + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘corrViz.Rmd’ using rmarkdown + + Quitting from corrViz.Rmd:75-81 [heatmap] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'corrViz.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘corrViz.Rmd’ + + SUMMARY: processing the following file failed: + ‘corrViz.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.2Mb + sub-directories of 1Mb or more: + doc 6.7Mb + ``` + +# CoSMoS + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/TycheLab/CoSMoS +* Source code: https://github.com/cran/CoSMoS +* Date/Publication: 2021-05-29 23:20:08 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "CoSMoS")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘vignette.Rmd’ using rmarkdown + ``` + +# countfitteR + +
+ +* Version: 1.4 +* GitHub: https://github.com/BioGenies/countfitteR +* Source code: https://github.com/cran/countfitteR +* Date/Publication: 2020-09-30 21:30:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "countfitteR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(countfitteR) + > + > test_check("countfitteR") + [ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ] + + ... + 1. ├─testthat::expect_equal(p$labels[[1]], "x") at testing.R:45:3 + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. ├─p$labels[[1]] + 5. ├─S7:::`[[.S7_object`(p$labels, 1) + 6. └─base::NextMethod() + + [ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) summary_fitlist.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) summary_fitlist.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) summary_fitlist.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) summary_fitlist.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) summary_fitlist.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# countries + +
+ +* Version: 1.2.1 +* GitHub: https://github.com/fbellelli/countries +* Source code: https://github.com/cran/countries +* Date/Publication: 2025-02-22 14:10:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "countries")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(countries) + > + > test_check("countries") + + In total 1 unique country names were provided + 1/1 have been matched with EXACT matching + ... + `expected`: "gg" "ggplot" + ── Failure ('test_function_output.R:319:3'): output from quick_map() are as expected ── + class(quick_map(example, "test", col_na = "black")) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 9 | WARN 0 | SKIP 2 | PASS 137 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 9044 marked UTF-8 strings + ``` + +# coursekata + +
+ +* Version: 0.18.1 +* GitHub: https://github.com/coursekata/coursekata-r +* Source code: https://github.com/cran/coursekata +* Date/Publication: 2024-12-12 17:10:02 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "coursekata")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(coursekata) + Loading required package: dslabs + Loading required package: fivethirtyeight + Some larger datasets need to be installed separately, like senators and + house_district_forecast. To install these, we recommend you install the + fivethirtyeightdata package by running: + ... + • gf_model-visual/gf-violin-cond-mod-y-on-x-pred-on-color.svg + • gf_model-visual/gf-violin-cond-mod-y-on-x-pred-on-facet.svg + • gf_model-visual/gf-violin-cond-mod-y-on-y-pred-on-color.svg + • gf_model-visual/gf-violin-cond-mod-y-on-y-pred-on-facet.svg + • gf_model-visual/gf-violin-cond-mod-y-on-y.svg + • gf_model-visual/gf-violin-horizontal-mull-mod-y-on-x.svg + • gf_model-visual/gf-violin-mull-mod-y-on-x-2.svg + • gf_model-visual/gf-violin-null-mod-y-on-y.svg + Error: Test failures + Execution halted + ``` + +# covalchemy + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/namanlab/covalchemy +* Source code: https://github.com/cran/covalchemy +* Date/Publication: 2024-11-21 17:10:11 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "covalchemy")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘covalchemy-Ex.R’ failed + The error most likely occurred in: + + > ### Name: get_simpsons_paradox_c + > ### Title: Simpson's Paradox Transformation with Copula and Simulated + > ### Annealing + > ### Aliases: get_simpsons_paradox_c + > + > ### ** Examples + > + > set.seed(123) + > n <- 300 + > z <- sample(c("A", "B", "C"), prob = c(0.3, 0.4, 0.3), size = n, replace = TRUE) + > x <- rnorm(n, 10, sd = 5) + 5 * rbeta(n, 5, 3) + > y <- 2 * x + rnorm(n, 5, sd = 4) + > t <- c(-0.8, 0.8, -0.8) + > res <- get_simpsons_paradox_c(x, y, z, t, sd_x = 0.07, sd_y = 0.07, lambda4 = 5) + Error: Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘akima’ + ``` + +# coveffectsplot + +
+ +* Version: 1.0.6 +* GitHub: https://github.com/smouksassi/coveffectsplot +* Source code: https://github.com/cran/coveffectsplot +* Date/Publication: 2025-01-12 13:30:01 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "coveffectsplot")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Exposure_Response_Example.Rmd’ using rmarkdown + ``` + +# covidcast + +
+ +* Version: 0.5.2 +* GitHub: https://github.com/cmu-delphi/covidcast +* Source code: https://github.com/cran/covidcast +* Date/Publication: 2023-07-12 23:40:06 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "covidcast")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(covidcast) + We encourage COVIDcast API users to register on our mailing list: + https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api + We'll send announcements about new data sources, package updates, + server maintenance, and new features. + > + ... + • plot/default-county-choropleth.svg + • plot/default-hrr-choropleth-with-include.svg + • plot/default-msa-choropleth-with-include.svg + • plot/default-state-choropleth-with-include.svg + • plot/default-state-choropleth-with-range.svg + • plot/state-choropleth-with-no-metadata.svg + • plot/state-line-graph-with-range.svg + • plot/state-line-graph-with-stderrs.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘correlation-utils.Rmd’ using rmarkdown + --- finished re-building ‘correlation-utils.Rmd’ + + --- re-building ‘covidcast.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 20 marked UTF-8 strings + ``` + +# cowplot + +
+ +* Version: 1.1.3 +* GitHub: https://github.com/wilkelab/cowplot +* Source code: https://github.com/cran/cowplot +* Date/Publication: 2024-01-22 23:22:51 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "cowplot")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(cowplot) + > + > test_check("cowplot") + [ FAIL 2 | WARN 4 | SKIP 7 | PASS 52 ] + + ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ + ... + ── Error ('test_ggdraw.R:11:3'): basic ggdraw usage ──────────────────────────── + Error: Can't get S7 properties with `$`. Did you mean `build@layout`? + Backtrace: + ▆ + 1. ├─build$layout at test_ggdraw.R:11:3 + 2. └─S7:::`$.S7_object`(build, layout) at test_ggdraw.R:11:3 + + [ FAIL 2 | WARN 4 | SKIP 7 | PASS 52 ] + Error: Test failures + Execution halted + ``` + +# Coxmos + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/BiostatOmics/Coxmos +* Source code: https://github.com/cran/Coxmos +* Date/Publication: 2025-03-05 16:30:02 UTC +* Number of recursive dependencies: 202 + +Run `revdepcheck::cloud_details(, "Coxmos")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Coxmos-Ex.R’ failed + The error most likely occurred in: + + > ### Name: getAutoKM + > ### Title: getAutoKM + > ### Aliases: getAutoKM + > + > ### ** Examples + > + > data("X_proteomic") + ... + + x.scale = TRUE) + > getAutoKM(type = "LP", model = splsicox.model) + Warning in geom_segment(aes(x = 0, y = max(y2), xend = max(x1), yend = max(y2)), : + All aesthetics have length 1, but the data has 2 rows. + ℹ Please consider using `annotate()` or provide this layer with data containing + a single row. + Warning: Ignoring unknown labels: + • `linetype = "1"` + Error: Can't get S7 properties with `$`. Did you mean `g@data`? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.3Mb + sub-directories of 1Mb or more: + R 1.0Mb + data 2.5Mb + doc 3.1Mb + ``` + +# CRABS + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/afmagee/CRABS +* Source code: https://github.com/cran/CRABS +* Date/Publication: 2023-10-24 10:20:07 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "CRABS")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘CRABS-Ex.R’ failed + The error most likely occurred in: + + > ### Name: congruent.models + > ### Title: Create a set of congruent models + > ### Aliases: congruent.models + > + > ### ** Examples + > + > + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +# cricketdata + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/robjhyndman/cricketdata +* Source code: https://github.com/cran/cricketdata +* Date/Publication: 2025-03-25 05:50:16 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "cricketdata")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘cricinfo.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.8Mb + sub-directories of 1Mb or more: + data 2.0Mb + doc 2.1Mb + extdata 2.0Mb + ``` + +# crmPack + +
+ +* Version: 1.0.6 +* GitHub: https://github.com/openpharma/crmPack +* Source code: https://github.com/cran/crmPack +* Date/Publication: 2024-06-26 15:00:14 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "crmPack")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘guidelines.Rmd’ using rmarkdown + --- finished re-building ‘guidelines.Rmd’ + + --- re-building ‘example.Rnw’ using Sweave + Loading required package: ggplot2 + Registered S3 method overwritten by 'crmPack': + method from + print.gtable gtable + Type crmPackHelp() to open help browser + ... + chunk 25 (label = ggmcmc) + Error : C stack usage 9965156 is too close to the limit + + --- failed re-building ‘example.Rnw’ + + SUMMARY: processing the following file failed: + ‘example.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘guidelines.Rmd’ using rmarkdown + --- finished re-building ‘guidelines.Rmd’ + + --- re-building ‘example.Rnw’ using Sweave + Loading required package: ggplot2 + Registered S3 method overwritten by 'crmPack': + method from + print.gtable gtable + Type crmPackHelp() to open help browser + ... + l.7 ^^M + + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘example.Rnw’ + + SUMMARY: processing the following file failed: + ‘example.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# crosshap + +
+ +* Version: 1.4.0 +* GitHub: https://github.com/jacobimarsh/crosshap +* Source code: https://github.com/cran/crosshap +* Date/Publication: 2024-03-31 15:40:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "crosshap")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 6 ] + Deleting unused snapshots: + • clustree/haptreedata.svg + • clustree/mgtreedata.svg + • crosshapviz/haplotype-viz-alt4data.svg + • crosshapviz/haplotype-viz-isolatewt3-data.svg + • crosshapviz/haplotype-viz-nolabs3data.svg + • crosshapviz/haplotype-viz4data.svg + Error: Test failures + Execution halted + ``` + +# crosstable + +
+ +* Version: 0.8.1 +* GitHub: https://github.com/DanChaltiel/crosstable +* Source code: https://github.com/cran/crosstable +* Date/Publication: 2024-11-01 10:30:03 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "crosstable")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘crosstable-Ex.R’ failed + The error most likely occurred in: + + > ### Name: body_add_legend + > ### Title: Add a legend to a table or a figure + > ### Aliases: body_add_legend body_add_table_legend body_add_figure_legend + > + > ### ** Examples + > + > library(officer) + ... + + bookmark="iris_col2", + + name_format=fp_italic, legend_style="Balloon Text") %>% + + body_add_crosstable(crosstable(iris[2])) %>% + + body_add_normal() %>% + + body_add_normal("There is also the figure \\@ref(iris_fig)") %>% + + body_add_gg(p) %>% + + body_add_figure_legend("Iris plot", bookmark="iris_fig") + Error in body_add_gg(., p) : inherits(value, "gg") is not TRUE + Calls: %>% ... body_add_fpar -> getOption -> %||% -> body_add_gg -> stopifnot + Execution halted + ``` + +# crosstalkr + +
+ +* Version: 1.0.5 +* GitHub: NA +* Source code: https://github.com/cran/crosstalkr +* Date/Publication: 2024-05-17 11:40:09 UTC +* Number of recursive dependencies: 160 + +Run `revdepcheck::cloud_details(, "crosstalkr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘crosstalkr_vignette.Rmd’ using rmarkdown + + Quitting from crosstalkr_vignette.Rmd:108-115 [compute_crosstalk] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'crosstalkr_vignette.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘crosstalkr_vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘crosstalkr_vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# cry + +
+ +* Version: 0.5.1 +* GitHub: NA +* Source code: https://github.com/cran/cry +* Date/Publication: 2022-10-10 08:00:05 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "cry")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cry-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_SHELX + > ### Title: Plot SHELXC log files + > ### Aliases: plot_SHELX + > + > ### ** Examples + > + > datadir <- system.file("extdata",package="cry") + > ## SHELXC + > shelxc_log <- file.path(datadir,"shelxc.log") + > shelxc <- read_SHELX_log(shelxc_log) + > plot_shelxc <- plot_SHELX(filename = shelxc, var = shelxc$I_sig, + + type = "shelxc", title_chart = "SHELXC") + Error in rep(yes, length.out = len) : + attempt to replicate an object of type 'object' + Calls: plot_SHELX -> ifelse -> ifelse -> ifelse + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘MTZ.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) calculate_cell_volume.Rd:16: Lost braces; missing escapes or markup? + 16 | V A real number. The volume (in angstroms^3 or angstroms^{-3}) + | ^ + ``` + +# csmpv + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/csmpv +* Date/Publication: 2024-03-01 18:12:44 UTC +* Number of recursive dependencies: 180 + +Run `revdepcheck::cloud_details(, "csmpv")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘csmpv_vignette.rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.1Mb + sub-directories of 1Mb or more: + doc 7.9Mb + ``` + +# cspp + +
+ +* Version: 0.3.3 +* GitHub: NA +* Source code: https://github.com/cran/cspp +* Date/Publication: 2022-12-17 00:20:02 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "cspp")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘cspp-vignette.Rmd’ using rmarkdown + ``` + +# ctrialsgov + +
+ +* Version: 0.2.5 +* GitHub: NA +* Source code: https://github.com/cran/ctrialsgov +* Date/Publication: 2021-10-18 16:00:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "ctrialsgov")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ctrialsgov) + > + > test_check("ctrialsgov") + [NCT04553939] ible Local Advanved |Bladder| Cancer + [NCT03517995] of Sulforaphane in |Bladder| Cancer Chemoprevent + [NCT04210479] Comparison of |Bladder| Filling vs. Non-Fil + ... + ▆ + 1. ├─ctrialsgov::ctgov_to_plotly(p) at test-plot.R:12:3 + 2. └─ctrialsgov:::ctgov_to_plotly.ctgov_bar_plot(p) + 3. ├─plotly::ggplotly(p, tooltip = "text") + 4. └─plotly:::ggplotly.ggplot(p, tooltip = "text") + 5. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 6 | SKIP 0 | PASS 43 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1350 marked UTF-8 strings + ``` + +# ctsmTMB + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/phillipbvetter/ctsmTMB +* Source code: https://github.com/cran/ctsmTMB +* Date/Publication: 2025-04-08 08:40:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "ctsmTMB")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ctsmTMB-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.ctsmTMB.fit + > ### Title: This function creates residual plots for an estimated ctsmTMB + > ### object + > ### Aliases: plot.ctsmTMB.fit + > + > ### ** Examples + > + ... + Evaluations: Fun: 25 Grad: 18 + See stats::nlminb for available tolerance/control arguments. + Returning results... + Finished! + > + > # plot residuals + > plot(fit) + Error in plot.ctsmTMB.fit(fit) : The provided theme is not a ggtheme + Calls: plot -> plot.ctsmTMB.fit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ctsmTMB.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 26.7Mb + sub-directories of 1Mb or more: + doc 1.7Mb + libs 24.3Mb + ``` + +# cubble + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/huizezhang-sherry/cubble +* Source code: https://github.com/cran/cubble +* Date/Publication: 2024-08-27 15:20:02 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "cubble")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘cb1class.Rmd’ using rmarkdown + --- finished re-building ‘cb1class.Rmd’ + + --- re-building ‘cb2create.Rmd’ using rmarkdown + --- finished re-building ‘cb2create.Rmd’ + + --- re-building ‘cb3tsibblesf.Rmd’ using rmarkdown + --- finished re-building ‘cb3tsibblesf.Rmd’ + + --- re-building ‘cb4glyph.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.6Mb + sub-directories of 1Mb or more: + data 6.0Mb + doc 1.4Mb + ``` + +# cutpointr + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/thie1e/cutpointr +* Source code: https://github.com/cran/cutpointr +* Date/Publication: 2024-12-10 22:50:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "cutpointr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(cutpointr) + > + > test_check("cutpointr") + [ FAIL 105 | WARN 14 | SKIP 0 | PASS 337 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + class(tempplot5) not identical to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + Backtrace: + ▆ + 1. └─cutpointr (local) test_ggplot_functions(cp, do_plot_metric = FALSE) at test-cutpointr.R:1156:5 + 2. └─testthat::expect_identical(class(tempplot5), c("gg", "ggplot")) at test-cutpointr.R:22:5 + + [ FAIL 105 | WARN 14 | SKIP 0 | PASS 337 ] + Error: Test failures + Execution halted + ``` + +# cvasi + +
+ +* Version: 1.4.0 +* GitHub: https://github.com/cvasi-tktd/cvasi +* Source code: https://github.com/cran/cvasi +* Date/Publication: 2025-02-28 11:00:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "cvasi")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘cvasi-1-manual.Rmd’ using rmarkdown + --- finished re-building ‘cvasi-1-manual.Rmd’ + + --- re-building ‘cvasi-2-howto.Rmd’ using rmarkdown + ``` + +# cvms + +
+ +* Version: 1.7.0 +* GitHub: https://github.com/ludvigolsen/cvms +* Source code: https://github.com/cran/cvms +* Date/Publication: 2025-03-07 11:30:07 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "cvms")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(cvms) + > + > if (require("xpectr")) { + + test_check("cvms") + + } + Loading required package: xpectr + ... + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + + [ FAIL 11 | WARN 0 | SKIP 71 | PASS 3586 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Creating_a_confusion_matrix.Rmd’ using rmarkdown + ``` + +# cylcop + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/r-lib/devtools +* Source code: https://github.com/cran/cylcop +* Date/Publication: 2022-10-29 22:00:21 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "cylcop")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cylcop-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_circ_hist + > ### Title: Circular Histogram of Turn Angles + > ### Aliases: plot_circ_hist + > + > ### ** Examples + > + > set.seed(123) + ... + 23. │ └─l$compute_geom_2(d, theme = plot@theme) + 24. │ └─ggplot2 (local) compute_geom_2(..., self = self) + 25. │ └─self$geom$use_defaults(...) + 26. │ └─ggplot2 (local) use_defaults(..., self = self) + 27. │ └─ggplot2:::check_aesthetics(new_params, nrow(data)) + 28. │ └─vctrs::list_sizes(x) + 29. └─vctrs:::stop_scalar_type(``(``), "x$label", ``) + 30. └─vctrs:::stop_vctrs(...) + 31. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) gammamix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) gammamix.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) gammamix.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) gammamix.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) joint.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) joint.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) joint.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) lnormmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) lnormmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) lnormmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly + ... + checkRd: (-1) vonmisesmix.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) vonmisesmix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) weibullmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) weibullmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) weibullmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) weibullmix.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) wrappedcauchy.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) wrappedcauchy.Rd:45-47: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) wrappedcauchy.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) wrappedcauchy.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# cystiSim + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/brechtdv/cystiSim +* Source code: https://github.com/cran/cystiSim +* Date/Publication: 2016-05-15 21:46:33 +* Number of recursive dependencies: 31 + +Run `revdepcheck::cloud_details(, "cystiSim")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘cystiSim-Ex.R’ failed + The error most likely occurred in: + + > ### Name: cystiRun + > ### Title: 'cystiRun' object + > ### Aliases: cystiRun initiate update.cystiRun print.cystiRun plot.cystiRun + > ### prevalence + > + > ### ** Examples + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) fit.Rd:37: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.Rd:38: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.Rd:39: Lost braces in \itemize; meant \describe ? + ``` + +# CytoSimplex + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/welch-lab/CytoSimplex +* Source code: https://github.com/cran/CytoSimplex +* Date/Publication: 2025-04-23 14:30:02 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "CytoSimplex")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘CytoSimplex.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.8Mb + sub-directories of 1Mb or more: + data 3.5Mb + libs 3.4Mb + ``` + +# D2MCS + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/drordas/D2MCS +* Source code: https://github.com/cran/D2MCS +* Date/Publication: 2022-08-23 11:40:02 UTC +* Number of recursive dependencies: 178 + +Run `revdepcheck::cloud_details(, "D2MCS")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test_all.R’ + Running the tests in ‘tests/test_all.R’ failed. + Complete output: + > testthat::test_check("D2MCS") + Loading required package: D2MCS + [ FAIL 6 | WARN 5 | SKIP 15 | PASS 702 ] + + ══ Skipped tests (15) ══════════════════════════════════════════════════════════ + • On CRAN (2): 'test_D2MCS.R:129:3', 'test_D2MCS.R:213:3' + • {ranger} is not installed (13): 'test_D2MCS.R:411:3', + ... + 5. └─BinaryPlot$new()$plot(binary.summary) + 6. └─super$plot(summary) + 7. └─ggplot2::scale_color_continuous(...) + 8. └─ggplot2:::scale_backward_compatibility(...) + 9. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 10. └─rlang::abort(...) + + [ FAIL 6 | WARN 5 | SKIP 15 | PASS 702 ] + Error: Test failures + Execution halted + ``` + +# dabestr + +
+ +* Version: 2025.3.14 +* GitHub: https://github.com/ACCLAB/dabestr +* Source code: https://github.com/cran/dabestr +* Date/Publication: 2025-02-26 12:50:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "dabestr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + • 001_plotter/two-groups-unpaired-mean-diff-colour-float-true.svg + • 001_plotter/two-groups-unpaired-mean-diff-float-false.svg + • 001_plotter/two-groups-unpaired-mean-diff-float-true.svg + • 002_forest_plot/deltadelta-forest-plot-mean-diff.svg + • 002_forest_plot/deltadelta-forest-plot-with-plot-kwargs.svg + • 002_forest_plot/minimeta-forest-plot-mean-diff.svg + • 002_forest_plot/minimeta-forest-plot-median-diff.svg + • 002_forest_plot/minimeta-forest-plot-with-plot-kwargs.svg + Error: Test failures + Execution halted + ``` + +# daiquiri + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/ropensci/daiquiri +* Source code: https://github.com/cran/daiquiri +* Date/Publication: 2023-07-18 16:50:09 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "daiquiri")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(daiquiri) + > + > test_check("daiquiri") + + Quitting from report_htmldoc.Rmd:466-528 [daiquiri-individual-fields] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + ... + 36. └─rlang::abort(message, ..., call = call, arg = arg) + + [ FAIL 4 | WARN 0 | SKIP 8 | PASS 472 ] + Deleting unused snapshots: + • aggregate_data/test_[ALL_FIELDS_COMBINED].csv + • aggregate_data/test_[DUPLICATES].csv + • aggregate_data/test_col1.csv + • aggregate_data/test_col2.csv + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘daiquiri.Rmd’ using rmarkdown + ``` + +# DAISIE + +
+ +* Version: 4.5.0 +* GitHub: https://github.com/rsetienne/DAISIE +* Source code: https://github.com/cran/DAISIE +* Date/Publication: 2025-02-05 13:20:01 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "DAISIE")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘DAISIE-Ex.R’ failed + The error most likely occurred in: + + > ### Name: DAISIE_plot_input + > ### Title: DAISIE tree plot + > ### Aliases: DAISIE_plot_input + > + > ### ** Examples + > + > + ... + Please report the issue at . + Warning in fortify(data, ...) : Arguments in `...` must be used. + ✖ Problematic arguments: + • as.Date = as.Date + • yscale_mapping = yscale_mapping + • right = right + • hang = hang + ℹ Did you misspell an argument name? + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘doMC’ + ``` + +* checking installed package size ... NOTE + ``` + installed size is 37.8Mb + sub-directories of 1Mb or more: + libs 35.5Mb + ``` + +# DAISIEprep + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/joshwlambert/DAISIEprep +* Source code: https://github.com/cran/DAISIEprep +* Date/Publication: 2024-12-18 00:20:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "DAISIEprep")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘DAISIEprep-Ex.R’ failed + The error most likely occurred in: + + > ### Name: extract_stem_age + > ### Title: Extracts the stem age from the phylogeny when the a species is + > ### known to belong to a genus but is not itself in the phylogeny and + > ### there are members of the same genus are in the phylogeny. The stem + > ### age can either be for the genus (or several genera) in the tree + > ### ('stem = "genus"') or use an extraction algorithm to find the stem of + > ### when the species colonised the island (stem = "island_presence), + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(DAISIEprep) + > + > test_check("DAISIEprep") + [ FAIL 4 | WARN 1 | SKIP 14 | PASS 2235 ] + + ══ Skipped tests (14) ══════════════════════════════════════════════════════════ + ... + 20. └─ggplot2:::add_ggplot(e1, e2, e2name) + 21. └─ggplot2::ggplot_add(object, p, objectname) + 22. ├─S7::S7_dispatch() + 23. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 24. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 25. └─rlang::abort(...) + + [ FAIL 4 | WARN 1 | SKIP 14 | PASS 2235 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Forcing_nonendemic_singleton.Rmd’ using rmarkdown + + Quitting from Forcing_nonendemic_singleton.Rmd:27-45 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Forcing_nonendemic_singleton.Rmd' failed with diagnostics: + Can't add `ggtree::geom_tiplab(as_ylab = TRUE)` to a object. + ... + Quitting from Multi_tip_extraction.Rmd:29-41 [sim-data] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Multi_tip_extraction.Rmd' failed with diagnostics: + Can't add `ggtree::geom_tiplab(as_ylab = TRUE)` to a object. + --- failed re-building ‘Multi_tip_extraction.Rmd’ + + --- re-building ‘Performance.Rmd’ using rmarkdown + ``` + +# DALEX + +
+ +* Version: 2.4.3 +* GitHub: https://github.com/ModelOriented/DALEX +* Source code: https://github.com/cran/DALEX +* Date/Publication: 2023-01-15 23:10:02 UTC +* Number of recursive dependencies: 50 + +Run `revdepcheck::cloud_details(, "DALEX")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(DALEX) + Welcome to DALEX (version: 2.4.3). + Find examples and detailed introduction at: http://ema.drwhy.ai/ + Additional features will be available after installation of: ggpubr. + Use 'install_dependencies()' to get all suggested dependencies + > + ... + ── Failure ('test_predict_profile.R:23:3'): Output format - plot ─────────────── + plot(lm_cp) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_predict_profile.R:45:3'): Output format - plot ─────────────── + plot(aranger_cp) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_predict_profile.R:46:3'): Output format - plot ─────────────── + plot(alm_cp) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 77 | WARN 34 | SKIP 8 | PASS 166 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) plot.model_parts.Rd:25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.model_parts.Rd:26: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.model_parts.Rd:27: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.model_parts.Rd:28: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.model_parts.Rd:29: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.model_parts.Rd:30-31: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.model_profile.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) plot.model_profile.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) plot.model_profile.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) plot.model_profile.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly + ... + checkRd: (-1) plot.predict_parts.Rd:53: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.predict_profile.Rd:25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.predict_profile.Rd:26: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.predict_profile.Rd:27: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.predict_profile.Rd:28: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.predict_profile.Rd:29: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.predict_profile.Rd:30-31: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.predict_profile.Rd:32: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.predict_profile.Rd:33-34: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.predict_profile.Rd:35: Lost braces in \itemize; meant \describe ? + ``` + +# DALEXtra + +
+ +* Version: 2.3.0 +* GitHub: https://github.com/ModelOriented/DALEXtra +* Source code: https://github.com/cran/DALEXtra +* Date/Publication: 2023-05-26 00:10:02 UTC +* Number of recursive dependencies: 173 + +Run `revdepcheck::cloud_details(, "DALEXtra")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(DALEXtra) + Loading required package: DALEX + Welcome to DALEX (version: 2.4.3). + Find examples and detailed introduction at: http://ema.drwhy.ai/ + Additional features will be available after installation of: ggpubr. + Use 'install_dependencies()' to get all suggested dependencies + ... + 'test_h2o_explain.R:90:3' + • Test with windows (1): 'test_champion_challenger.R:5:3' + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_training_test.R:41:3'): trainig_test parameters ────────────── + plot(plot_data) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 1 | WARN 10 | SKIP 11 | PASS 55 ] + Error: Test failures + Execution halted + ``` + +# daltoolbox + +
+ +* Version: 1.2.707 +* GitHub: https://github.com/cefet-rj-dal/daltoolbox +* Source code: https://github.com/cran/daltoolbox +* Date/Publication: 2025-05-13 06:20:13 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "daltoolbox")` for more info + +
+ +## Newly broken + +* checking whether package ‘daltoolbox’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘daltoolbox’ + See ‘/tmp/workdir/daltoolbox/new/daltoolbox.Rcheck/00install.out’ for details. + ``` + +# dampack + +
+ +* Version: 1.0.2.1000 +* GitHub: https://github.com/DARTH-git/dampack +* Source code: https://github.com/cran/dampack +* Date/Publication: 2024-09-30 17:00:06 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "dampack")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dampack-Ex.R’ failed + The error most likely occurred in: + + > ### Name: calc_exp_loss + > ### Title: Calculate the expected loss at a range of willingness-to-pay + > ### thresholds + > ### Aliases: calc_exp_loss + > + > ### ** Examples + > + ... + 5. └─ggplot2:::scale_backward_compatibility(...) + 6. ├─rlang::exec(scale, !!!args) + 7. └─ggplot2 (local) ``(...) + 8. ├─ggplot2::discrete_scale(...) + 9. │ └─ggplot2::ggproto(...) + 10. │ └─rlang::list2(...) + 11. └─ggplot2:::pal_qualitative(type = type) + 12. └─ggplot2:::stop_input_type(type, "a character vector or list of character vectors") + 13. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dampack) + Loading required package: ggplot2 + > + > test_check("dampack") + [ FAIL 12 | WARN 0 | SKIP 1 | PASS 122 ] + + ... + 8. ├─ggplot2::discrete_scale(...) + 9. │ └─ggplot2::ggproto(...) + 10. │ └─rlang::list2(...) + 11. └─ggplot2:::pal_qualitative(type = type) + 12. └─ggplot2:::stop_input_type(type, "a character vector or list of character vectors") + 13. └─rlang::abort(message, ..., call = call, arg = arg) + + [ FAIL 12 | WARN 0 | SKIP 1 | PASS 122 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘basic_cea.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.2Mb + sub-directories of 1Mb or more: + data 3.0Mb + doc 1.8Mb + ``` + +# dams + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/jsta/dams +* Source code: https://github.com/cran/dams +* Date/Publication: 2020-05-20 16:00:03 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "dams")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘dams.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 5 marked UTF-8 strings + ``` + +# dartR + +
+ +* Version: 2.9.9.5 +* GitHub: https://github.com/green-striped-gecko/dartR +* Source code: https://github.com/cran/dartR +* Date/Publication: 2025-03-25 09:50:02 UTC +* Number of recursive dependencies: 284 + +Run `revdepcheck::cloud_details(, "dartR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dartR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gl.dist.ind + > ### Title: Calculates a distance matrix for individuals defined in a + > ### genlight object + > ### Aliases: gl.dist.ind + > + > ### ** Examples + > + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.9Mb + sub-directories of 1Mb or more: + R 3.5Mb + data 2.0Mb + help 3.5Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘foreach’ + All declared Imports should be used. + ``` + +# dartR.base + +
+ +* Version: 1.0.5 +* GitHub: NA +* Source code: https://github.com/cran/dartR.base +* Date/Publication: 2025-03-04 03:40:02 UTC +* Number of recursive dependencies: 289 + +Run `revdepcheck::cloud_details(, "dartR.base")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dartR.base-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gl.dist.ind + > ### Title: Calculates a distance matrix for individuals defined in a + > ### genlight object + > ### Aliases: gl.dist.ind + > + > ### ** Examples + > + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘dartRverse’ + ``` + +# dartR.captive + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/dartR.captive +* Date/Publication: 2025-02-18 08:20:05 UTC +* Number of recursive dependencies: 165 + +Run `revdepcheck::cloud_details(, "dartR.captive")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dartR.captive-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gl.assign.mahalanobis + > ### Title: Assign an individual of unknown provenance to population based + > ### on Mahalanobis Distance + > ### Aliases: gl.assign.mahalanobis + > + > ### ** Examples + > + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +# dartR.popgen + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/dartR.popgen +* Date/Publication: 2024-06-27 23:20:04 UTC +* Number of recursive dependencies: 174 + +Run `revdepcheck::cloud_details(, "dartR.popgen")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dartR.popgen-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gl.ld.distance + > ### Title: Plots linkage disequilibrium against distance by population + > ### disequilibrium patterns + > ### Aliases: gl.ld.distance + > + > ### ** Examples + > + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +# dartR.sexlinked + +
+ +* Version: 1.0.5 +* GitHub: NA +* Source code: https://github.com/cran/dartR.sexlinked +* Date/Publication: 2024-06-24 15:40:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "dartR.sexlinked")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dartR.sexlinked-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gl.drop.sexlinked + > ### Title: Removes loci that are sex linked + > ### Aliases: gl.drop.sexlinked + > + > ### ** Examples + > + > LBP_noSexLinked <- gl.drop.sexlinked(x = LBP, system = "xy", plot.display = TRUE, ncores = 1) + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# DatabionicSwarm + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/Mthrun/DatabionicSwarm +* Source code: https://github.com/cran/DatabionicSwarm +* Date/Publication: 2024-06-20 10:10:16 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "DatabionicSwarm")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘DatabionicSwarm.Rmd’ using rmarkdown + + Quitting from DatabionicSwarm.Rmd:95-105 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `deldir::deldir()`: + ! Bailing out of dirseg. + --- + Backtrace: + ... + + Error: processing vignette 'DatabionicSwarm.Rmd' failed with diagnostics: + Bailing out of dirseg. + --- failed re-building ‘DatabionicSwarm.Rmd’ + + SUMMARY: processing the following file failed: + ‘DatabionicSwarm.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.3Mb + sub-directories of 1Mb or more: + doc 2.7Mb + libs 8.2Mb + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘DRquality’ + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# ddpcr + +
+ +* Version: 1.15.2 +* GitHub: https://github.com/daattali/ddpcr +* Source code: https://github.com/cran/ddpcr +* Date/Publication: 2023-08-20 22:32:32 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "ddpcr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘algorithm.Rmd’ using rmarkdown + --- finished re-building ‘algorithm.Rmd’ + + --- re-building ‘extend.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.1Mb + sub-directories of 1Mb or more: + sample_data 3.1Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘shinydisconnect’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) plot.ddpcr_plate.Rd:136-137: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.ddpcr_plate.Rd:138-139: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.ddpcr_plate.Rd:140-141: Lost braces in \itemize; meant \describe ? + ``` + +# ddtlcm + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/limengbinggz/ddtlcm +* Source code: https://github.com/cran/ddtlcm +* Date/Publication: 2024-04-04 02:32:57 UTC +* Number of recursive dependencies: 154 + +Run `revdepcheck::cloud_details(, "ddtlcm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ddtlcm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.summary.ddt_lcm + > ### Title: Plot the MAP tree and class profiles of summarized DDT-LCM + > ### results + > ### Aliases: plot.summary.ddt_lcm + > + > ### ** Examples + > + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + + [ FAIL 1 | WARN 33 | SKIP 0 | PASS 62 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ddtlcm-demo.Rmd’ using rmarkdown + + Quitting from ddtlcm-demo.Rmd:133-139 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ddtlcm-demo.Rmd' failed with diagnostics: + Can't add `geom_tiplab(size = 4)` to a object. + --- failed re-building ‘ddtlcm-demo.Rmd’ + + SUMMARY: processing the following file failed: + ‘ddtlcm-demo.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 13.8Mb + sub-directories of 1Mb or more: + data 12.5Mb + ``` + +# debkeepr + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/jessesadler/debkeepr +* Source code: https://github.com/cran/debkeepr +* Date/Publication: 2023-03-22 09:00:10 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "debkeepr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘debkeepr.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 53 marked UTF-8 strings + ``` + +# decisionSupport + +
+ +* Version: 1.114 +* GitHub: NA +* Source code: https://github.com/cran/decisionSupport +* Date/Publication: 2024-04-08 15:20:05 UTC +* Number of recursive dependencies: 176 + +Run `revdepcheck::cloud_details(, "decisionSupport")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘decisionSupport-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compound_figure + > ### Title: Compound figure for decision support + > ### Aliases: compound_figure + > ### Keywords: Monte-Carlo NPV decision-analysis decisionSupport + > ### net-present-value risk uncertainty + > + > ### ** Examples + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘example_decision_function.Rmd’ using rmarkdown + ``` + +# Deducer + +
+ +* Version: 0.9-0 +* GitHub: NA +* Source code: https://github.com/cran/Deducer +* Date/Publication: 2025-05-07 13:50:06 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "Deducer")` for more info + +
+ +## Newly broken + +* checking whether package ‘Deducer’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘Deducer’ + See ‘/tmp/workdir/Deducer/new/Deducer.Rcheck/00install.out’ for details. + ``` + +# deepdep + +
+ +* Version: 0.4.3 +* GitHub: https://github.com/DominikRafacz/deepdep +* Source code: https://github.com/cran/deepdep +* Date/Publication: 2024-03-12 21:10:07 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "deepdep")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(deepdep) + > + > test_check("deepdep") + [ FAIL 1 | WARN 0 | SKIP 1 | PASS 25 ] + + ... + 5. └─ggraph::geom_node_point(ggplot2::aes(fill = factor(layer)), size = 3, shape = 21, show.legend = FALSE) + 6. └─ggplot2::layer(...) + 7. └─ggplot2:::validate_mapping(mapping, call_env) + 8. └─cli::cli_abort(msg, call = call) + 9. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 1 | PASS 25 ] + Error: Test failures + Execution halted + Ran 10/10 deferred expressions + ``` + +# deeptime + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/willgearty/deeptime +* Source code: https://github.com/cran/deeptime +* Date/Publication: 2024-10-25 23:30:02 UTC +* Number of recursive dependencies: 195 + +Run `revdepcheck::cloud_details(, "deeptime")` for more info + +
+ +## Newly broken + +* checking whether package ‘deeptime’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/deeptime/new/deeptime.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘deeptime’ ... +** package ‘deeptime’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +... +** testing if installed package can be loaded from temporary location +Error: package or namespace load failed for ‘deeptime’: + .onLoad failed in loadNamespace() for 'deeptime', details: + call: NULL + error: object properties are invalid: +- @hjust must be , , or , not +Error: loading failed +Execution halted +ERROR: loading failed +* removing ‘/tmp/workdir/deeptime/new/deeptime.Rcheck/deeptime’ + + +``` +### CRAN + +``` +* installing *source* package ‘deeptime’ ... +** package ‘deeptime’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (deeptime) + + +``` +# demodelr + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/demodelr +* Date/Publication: 2022-09-16 15:36:08 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "demodelr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘demodelr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: phaseplane + > ### Title: Phase plane of differential equation. + > ### Aliases: phaseplane + > + > ### ** Examples + > + > # For a two variable system of differential equations we use the + > # formula notation for dx/dt and the dy/dt separately: + > system_eq <- c(dx ~ cos(y), + + dy ~ sin(x)) + > phaseplane(system_eq,x_var='x',y_var='y') + Error: C stack usage 9963348 is too close to the limit + Execution halted + ``` + +# dendextend + +
+ +* Version: 1.19.0 +* GitHub: https://github.com/talgalili/dendextend +* Source code: https://github.com/cran/dendextend +* Date/Publication: 2024-11-15 10:40:06 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "dendextend")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > + > library(dendextend) + + --------------------- + Welcome to dendextend version 1.19.0 + Type citation('dendextend') for how to cite the package. + ... + ! `dim(data)` must return an of length 2. + ── Error ('test-ggdend.R:262:4'): print.ggdend prints a ggplot ───────────────── + Error in `fortify(data, ...)`: `data` must be a , or an object coercible by `fortify()`, or + a valid -like object coercible by `as.data.frame()`. + Caused by error in `check_data_frame_like()`: + ! `dim(data)` must return an of length 2. + + [ FAIL 3 | WARN 2 | SKIP 0 | PASS 868 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Cluster_Analysis.Rmd’ using rmarkdown + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'ggdendro', 'dendroextras', 'Hmisc', 'WGCNA', 'moduleColor', + 'distory', 'phangorn', 'zoo' + ``` + +* checking installed package size ... NOTE + ``` + installed size is 6.9Mb + sub-directories of 1Mb or more: + doc 5.8Mb + ``` + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘WGCNA’, ‘dendroextras’, ‘moduleColor’, ‘distory’, ‘phangorn’, ‘ggdendro’, ‘zoo’ + ``` + +# DescribeDisplay + +
+ +* Version: 0.2.11 +* GitHub: https://github.com/ggobi/DescribeDisplay +* Source code: https://github.com/cran/DescribeDisplay +* Date/Publication: 2023-08-25 08:50:15 UTC +* Number of recursive dependencies: 61 + +Run `revdepcheck::cloud_details(, "DescribeDisplay")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘DescribeDisplay-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_axis + > ### Title: Geom Axis. + > ### Aliases: geom_axis + > ### Keywords: internal + > + > ### ** Examples + > + ... + 8. │ ├─base::tryCatch(...) + 9. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 10. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 11. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 12. │ └─base::withCallingHandlers(...) + 13. └─ggplot2:::validate_as_data_frame(model) + 14. └─ggplot2:::check_data_frame_like(data) + 15. └─cli::cli_abort("{.code dim(data)} must return an {.cls integer} of length 2.") + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(DescribeDisplay) + > + > test_check("DescribeDisplay") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Error ('test-examples.R:6:3'): all basic examples ─────────────────────────── + Error in `fortify(data, ...)`: `data` must be a , or an object coercible by `fortify()`, or + a valid -like object coercible by `as.data.frame()`. + Caused by error in `check_data_frame_like()`: + ! `dim(data)` must return an of length 2. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# DEXiR + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/DEXiR +* Date/Publication: 2024-09-17 16:30:09 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "DEXiR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘DEXiR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggplot_parallel + > ### Title: ggplot_parallel + > ### Aliases: ggplot_parallel + > + > ### ** Examples + > + > if (requireNamespace("GGally", quietly = TRUE)) { + ... + + + + # Load "Car.dxi" + + CarDxi <- system.file("extdata", "Car.dxi", package = "DEXiR") + + Car <- read_dexi(CarDxi) + + + + # Plot all Car$alternatives with points and lines + + ggplot_parallel(Car) + ggplot2::geom_line(linewidth = 2) + ggplot2::geom_point(size = 3) + + } + Error: C stack usage 9964388 is too close to the limit + Execution halted + ``` + +# dfoliatR + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/chguiterman/dfoliatR +* Source code: https://github.com/cran/dfoliatR +* Date/Publication: 2023-08-09 22:10:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "dfoliatR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dfoliatR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_outbreak + > ### Title: Produce a stacked plot to present composited, site-level insect + > ### outbreak chronologies + > ### Aliases: plot_outbreak + > + > ### ** Examples + > + > data(dmj_obr) + > plot_outbreak(dmj_obr) + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(foo)@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dfoliatR) + > + > test_check("dfoliatR") + [ FAIL 1 | WARN 9 | SKIP 2 | PASS 12 ] + + ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ + ... + 2. │ └─vdiffr::expect_doppelganger(title, fig, path = path, ...) at test-plots.R:9:3 + 3. │ └─vdiffr (local) writer(fig, testcase, title) + 4. │ └─vdiffr:::print_plot(plot, title) + 5. └─dfoliatR::plot_outbreak(dfoliatR::dmj_obr) + 6. ├─ggplot2::ggplot_build(foo)$layout + 7. └─S7:::`$.S7_object`(ggplot2::ggplot_build(foo), "layout") + + [ FAIL 1 | WARN 9 | SKIP 2 | PASS 12 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘intro-to-dfoliatR.Rmd’ using rmarkdown + ``` + +# Dforest + +
+ +* Version: 0.4.2 +* GitHub: NA +* Source code: https://github.com/cran/Dforest +* Date/Publication: 2017-11-28 22:03:57 UTC +* Number of recursive dependencies: 27 + +Run `revdepcheck::cloud_details(, "Dforest")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Dforest-Ex.R’ failed + The error most likely occurred in: + + > ### Name: DF_easy + > ### Title: Simple pre-defined pipeline for Decision forest + > ### Aliases: DF_easy + > + > ### ** Examples + > + > # data(demo_simple) + ... + ! Unknown scale type: + Backtrace: + ▆ + 1. └─Dforest::DF_easy(Train_X, Train_Y, Test_X, Test_Y) + 2. └─Dforest::DF_ConfPlot(Pred_result, Test_Y) + 3. └─ggplot2::scale_color_continuous(...) + 4. └─ggplot2:::scale_backward_compatibility(...) + 5. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 6. └─rlang::abort(...) + Execution halted + ``` + +# diceR + +
+ +* Version: 3.0.0 +* GitHub: https://github.com/AlineTalhouk/diceR +* Source code: https://github.com/cran/diceR +* Date/Publication: 2025-02-05 09:40:01 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "diceR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-graphs.R:18:3'): graph_cdf object can have added/modified ggplot layers ── + isTRUE(all.equal(p1, p2)) is not FALSE + + `actual`: TRUE + `expected`: FALSE + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 113 ] + Error: Test failures + Execution halted + ``` + +# diffEnrich + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/SabaLab/diffEnrich +* Source code: https://github.com/cran/diffEnrich +* Date/Publication: 2022-06-27 18:30:06 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "diffEnrich")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘diffenrich_vignette.Rmd’ using rmarkdown + ``` + +# digiRhythm + +
+ +* Version: 2.4 +* GitHub: NA +* Source code: https://github.com/cran/digiRhythm +* Date/Publication: 2024-12-19 07:40:02 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "digiRhythm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘digiRhythm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: dfc + > ### Title: Computes the Degree of Function coupling (DFC), Harmonic Part + > ### (HP) and Weekly Lomb-Scargle Spectrum (LSP Spec) for one variable in + > ### an activity dataset. The dataset should be digiRhythm friendly. + > ### Aliases: dfc + > + > ### ** Examples + ... + 6 1970-01-06 1970-01-12 1 0.932453443859263 + Processing dates 1970-01-07 until 1970-01-13 + v Correct time format: First column has a POSIXct Format + v Number of days good for DFC: 7 days >= 2 days + v Correct numeric format - Column 2 ==> activity + The data is digiRhythm friendly + from to dfc hp + 7 1970-01-07 1970-01-13 1 0.932721686473303 + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Actgram_diurnality_avg_activity.Rmd’ using rmarkdown + ``` + +# DImodelsVis + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/DImodelsVis +* Date/Publication: 2024-02-26 14:10:15 UTC +* Number of recursive dependencies: 113 + +Run `revdepcheck::cloud_details(, "DImodelsVis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘DImodelsVis-Ex.R’ failed + The error most likely occurred in: + + > ### Name: conditional_ternary + > ### Title: Conditional ternary diagrams + > ### Aliases: conditional_ternary + > + > ### ** Examples + > + > library(DImodels) + ... + 12. │ └─base::withCallingHandlers(...) + 13. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) + 14. └─l$compute_position(d, layout) + 15. └─ggplot2 (local) compute_position(..., self = self) + 16. └─self$position$use_defaults(data, self$aes_params) + 17. └─ggplot2 (local) use_defaults(..., self = self) + 18. └─ggplot2:::check_aesthetics(new, nrow(data)) + 19. └─cli::cli_abort(...) + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘DImodelsVis-with-complex-models.Rmd’ using rmarkdown + ``` + +# directlabels + +
+ +* Version: 2024.1.21 +* GitHub: https://github.com/tdhock/directlabels +* Source code: https://github.com/cran/directlabels +* Date/Publication: 2024-01-24 19:20:07 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "directlabels")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘directlabels-Ex.R’ failed + The error most likely occurred in: + + > ### Name: direct.label + > ### Title: Direct labels for color decoding + > ### Aliases: direct.label directlabels + > + > ### ** Examples + > + > if(require(ggplot2)){ + ... + Backtrace: + ▆ + 1. ├─directlabels::direct.label(scatter) + 2. └─directlabels::direct.label.ggplot(scatter) + 3. └─directlabels::geom_dl(...) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘ggplot.R’ + Running the tests in ‘tests/ggplot.R’ failed. + Complete output: + > if(require(ggplot2)){ + + library(directlabels) + + data(mpg,package="ggplot2") + + plots <- + + list(qplot=qplot(hwy,cty,data=mpg,colour=class), + + ggplot=ggplot(mpg,aes(hwy,cty,colour=class))+geom_point(), + + aes2=ggplot(,aes(hwy,cty))+geom_point(aes(colour=class),data=mpg), + ... + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Warning messages: + 1: `qplot()` was deprecated in ggplot2 3.4.0. + 2: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the directlabels package. + Please report the issue at . + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘examples.Rmd’ using knitr + + Quitting from examples.Rmd:15-88 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'examples.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘examples.Rmd’ + + SUMMARY: processing the following file failed: + ‘examples.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# disaggregation + +
+ +* Version: 0.4.0 +* GitHub: NA +* Source code: https://github.com/cran/disaggregation +* Date/Publication: 2024-10-02 20:40:03 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "disaggregation")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(disaggregation) + > + > test_check("disaggregation") + Fitting model. This may be slow. + The data contains 100 polygons and 400 pixels + The largest polygon contains 4 pixels and the smallest polygon contains 4 pixels + ... + 2. └─disaggregation:::plot.disag_prediction(pred) + 3. └─tidyterra::geom_spatraster(data = rasters_to_plot) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + + [ FAIL 3 | WARN 10 | SKIP 0 | PASS 283 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘disaggregation.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 41.9Mb + sub-directories of 1Mb or more: + libs 41.2Mb + ``` + +# DiSCos + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/Davidvandijcke/DiSCos +* Source code: https://github.com/cran/DiSCos +* Date/Publication: 2024-07-23 03:30:03 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "DiSCos")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + `expected`: TRUE + ── Failure ('test-DiSCoTEA.R:142:3'): cdfDiff works ──────────────────────────── + typeof(discot$plot) == "list" is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 8 | WARN 2 | SKIP 1 | PASS 107 ] + Error: Test failures + Execution halted + ``` + +# discourseGT + +
+ +* Version: 1.2.0 +* GitHub: NA +* Source code: https://github.com/cran/discourseGT +* Date/Publication: 2023-07-19 07:20:02 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "discourseGT")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘discourseGT-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot1Att + > ### Title: Plots Graphs using ggplot2 with one attribute + > ### Aliases: plot1Att + > + > ### ** Examples + > + > df <- sampleData1 + ... + > prepNet <- tabulate_edges(df, silentNodes = 0) + > baseNet <- prepareGraphs(prepNet, project_title = "Sample Data 1", weightedGraph = TRUE) + > attdata <- attributeData + > plot1Att(baseNet, prop = 20, graphmode = "fruchtermanreingold", + + attribute = attdata$gender, + + attribute.label = "Gender", + + attribute.node.labels = attdata$node, attribute.nodesize = 12) + $g2plot + Error: C stack usage 9964180 is too close to the limit + Execution halted + ``` + +# distreg.vis + +
+ +* Version: 1.7.5 +* GitHub: https://github.com/Stan125/distreg.vis +* Source code: https://github.com/cran/distreg.vis +* Date/Publication: 2023-10-27 05:00:02 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "distreg.vis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘distreg.vis-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_dist + > ### Title: Plot predicted distributional regression models + > ### Aliases: plot_dist + > + > ### ** Examples + > + > # Generating data + ... + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the distreg.vis package. + Please report the issue at . + Warning: `aes_()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()` + ℹ The deprecated feature was likely used in the distreg.vis package. + Please report the issue at . + Error: Can't find property @i + Execution halted + ``` + +# distributions3 + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/alexpghayes/distributions3 +* Source code: https://github.com/cran/distributions3 +* Date/Publication: 2024-09-16 16:20:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "distributions3")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘distributions3-Ex.R’ failed + The error most likely occurred in: + + > ### Name: stat_auc + > ### Title: Fill out area under the curve for a plotted PDF + > ### Aliases: stat_auc StatAuc geom_auc GeomAuc + > ### Keywords: datasets + > + > ### ** Examples + > + > + > N1 <- Normal() + > plot_pdf(N1) + geom_auc(to = -0.645) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(distributions3) + + Attaching package: 'distributions3' + + The following object is masked from 'package:stats': + + ... + 1. ├─distributions3::plot_pdf(N1) at test-plot.R:48:3 + 2. │ ├─base::`$<-`(`*tmp*`, "mapping", value = ``) + 3. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "mapping", value = ``) + 4. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 5. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 6. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 2748 ] + Error: Test failures + Execution halted + ``` + +# dittoViz + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/dtm2451/dittoViz +* Source code: https://github.com/cran/dittoViz +* Date/Publication: 2025-02-25 18:30:02 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "dittoViz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dittoViz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: barPlot + > ### Title: Outputs a stacked bar plot to show the percent composition of + > ### samples, groups, clusters, or other groupings + > ### Aliases: barPlot + > + > ### ** Examples + > + ... + > # var = typically this will be observation-type annotations or clustering + > # This is the set of observations for which we will calculate frequencies + > # (per each unique value of this data) within each group + > # group.by = how to group observations together + > barPlot( + + data_frame = example_df, + + var = "clustering", + + group.by = "groups") + Error: Can't get S7 properties with `$`. Did you mean `pp@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dittoViz) + Loading required package: ggplot2 + > test_check("dittoViz") + Picking joint bandwidth of 11.2 + [ FAIL 103 | WARN 18 | SKIP 0 | PASS 29 ] + + ... + 6. └─dittoViz:::.yPlot_add_data_y_direction(...) + 7. └─ggplot2::geom_violin(draw_quantiles = vlnplot.quantiles) + 8. └─ggplot2:::check_numeric(draw_quantiles) + 9. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call) + 10. └─ggplot2:::stop_input_type(...) + 11. └─rlang::abort(message, ..., call = call, arg = arg) + + [ FAIL 103 | WARN 18 | SKIP 0 | PASS 29 ] + Error: Test failures + Execution halted + ``` + +# dndR + +
+ +* Version: 3.0.0 +* GitHub: https://github.com/njlyon0/dndR +* Source code: https://github.com/cran/dndR +* Date/Publication: 2025-04-02 18:00:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "dndR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + `expected`: "gg" "ggplot" + ── Failure ('test-probability_plot.R:22:3'): Outputs are as expected ─────────── + class(my_plot) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 102 ] + Error: Test failures + Execution halted + ``` + +# dobin + +
+ +* Version: 1.0.4 +* GitHub: NA +* Source code: https://github.com/cran/dobin +* Date/Publication: 2022-08-25 22:52:33 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "dobin")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘dobin.Rmd’ using rmarkdown + ``` + +# donutsk + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/dkibalnikov/donutsk +* Source code: https://github.com/cran/donutsk +* Date/Publication: 2024-04-22 18:50:06 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "donutsk")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘donutsk-Ex.R’ failed + The error most likely occurred in: + + > ### Name: donut_label + > ### Title: Create pie or donut label and text annotations + > ### Aliases: donut_label StatLabelInt geom_label_int StatTextInt + > ### geom_text_int StatLabelExt geom_label_ext StatTextExt geom_text_ext + > ### Keywords: datasets + > + > ### ** Examples + ... + + guides(alpha=guide_legend(ncol = 2), fill=guide_legend(ncol = 2)) + + + theme_void() + + + theme(legend.position = "inside", legend.position.inside = c(0.1, 0.9)) + > + > p + coord_radial(theta = "y", expand = FALSE, rotate_angle = FALSE) + Warning: The `rotate_angle` argument of `coord_radial()` is deprecated as of ggplot2 + 3.5.1. + ℹ Please use the `rotate.angle` argument instead. + Error: Can't find property @margin + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘real_life_example.Rmd’ using rmarkdown + + Quitting from real_life_example.Rmd:68-95 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @margin + --- + Backtrace: + ... + + Error: processing vignette 'real_life_example.Rmd' failed with diagnostics: + Can't find property @margin + --- failed re-building ‘real_life_example.Rmd’ + + SUMMARY: processing the following file failed: + ‘real_life_example.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# dotsViolin + +
+ +* Version: 0.0.1 +* GitHub: NA +* Source code: https://github.com/cran/dotsViolin +* Date/Publication: 2023-10-30 13:20:02 UTC +* Number of recursive dependencies: 37 + +Run `revdepcheck::cloud_details(, "dotsViolin")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dotsViolin-Ex.R’ failed + The error most likely occurred in: + + > ### Name: dots_and_violin + > ### Title: Makes a composite dot-plot and violin-plot + > ### Aliases: dots_and_violin + > ### Keywords: dot-plot violin-plot + > + > ### ** Examples + > + ... + 30. │ └─ggplot2 (local) draw_group(...) + 31. │ ├─ggplot2:::ggname(...) + 32. │ │ └─grid::grobName(grob, prefix) + 33. │ └─ggplot2:::dotstackGrob(...) + 34. └─base::.handleSimpleError(...) + 35. └─rlang (local) h(simpleError(msg, call)) + 36. └─handlers[[1L]](cnd) + 37. └─cli::cli_abort(...) + 38. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2 marked UTF-8 strings + ``` + +# dotwhisker + +
+ +* Version: 0.8.4 +* GitHub: https://github.com/fsolt/dotwhisker +* Source code: https://github.com/cran/dotwhisker +* Date/Publication: 2025-05-06 11:10:02 UTC +* Number of recursive dependencies: 75 + +Run `revdepcheck::cloud_details(, "dotwhisker")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dotwhisker-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add_brackets + > ### Title: Add Labelled Brackets to Group Predictors in a Dot-and-Whisker + > ### Plot + > ### Aliases: add_brackets + > + > ### ** Examples + > + ... + + relabel_predictors("(Intercept)" = "Intercept", + + wt = "Weight", + + cyl = "Cylinder", + + disp = "Displacement") + + + theme_bw() + xlab("Coefficient") + ylab("") + + + theme(legend.position="none") + + + geom_vline(xintercept = 0, colour = "grey50", linetype = 2)} %>% + + add_brackets(two_brackets) + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘dotwhisker-vignette.Rmd’ using rmarkdown + + Quitting from dotwhisker-vignette.Rmd:36-46 [basic] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + 4. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 5. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 6. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'dotwhisker-vignette.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘dotwhisker-vignette.Rmd’ + + --- re-building ‘kl2007_examples.Rmd’ using rmarkdown + ``` + +# dowser + +
+ +* Version: 2.3 +* GitHub: NA +* Source code: https://github.com/cran/dowser +* Date/Publication: 2024-10-22 17:10:07 UTC +* Number of recursive dependencies: 147 + +Run `revdepcheck::cloud_details(, "dowser")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dowser-Ex.R’ failed + The error most likely occurred in: + + > ### Name: getTrees + > ### Title: Estimate lineage tree topologies, branch lengths, and internal + > ### node states if desired + > ### Aliases: getTrees + > + > ### ** Examples + > + ... + ℹ The deprecated feature was likely used in the ggtree package. + Please report the issue at . + Warning in fortify(data, ...) : Arguments in `...` must be used. + ✖ Problematic arguments: + • as.Date = as.Date + • yscale_mapping = yscale_mapping + • hang = hang + ℹ Did you misspell an argument name? + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Building-Trees-Vignette.Rmd’ using rmarkdown + --- finished re-building ‘Building-Trees-Vignette.Rmd’ + + --- re-building ‘Discrete-Trait-Vignette.Rmd’ using rmarkdown + + Quitting from Discrete-Trait-Vignette.Rmd:118-123 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ... + Can't find property @i + --- failed re-building ‘Sequences-Vignette.Rmd’ + + SUMMARY: processing the following files failed: + ‘Discrete-Trait-Vignette.Rmd’ ‘Measurable-Evolution.Rmd’ + ‘Plotting-Trees-Vignette.Rmd’ ‘Quickstart-Vignette.Rmd’ + ‘Resolve-Light-Chains-Vignette.Rmd’ ‘Sequences-Vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# DOYPAColors + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/jmestret/DOYPAColors +* Source code: https://github.com/cran/DOYPAColors +* Date/Publication: 2024-09-03 10:30:19 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "DOYPAColors")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘DOYPAColors-Ex.R’ failed + The error most likely occurred in: + + > ### Name: preview_pal + > ### Title: Preview a Single Color Palette + > ### Aliases: preview_pal + > + > ### ** Examples + > + > # Preview a DOYPAColors palette with multiple plots + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─DOYPAColors::preview_pal(palette = "buzz") + 2. └─tidyterra::geom_spatraster(data = raster_data) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 1. └─DOYPAColors::preview_pal("buzz") at test-utils.R:42:3 + 2. └─tidyterra::geom_spatraster(data = raster_data) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + + [ FAIL 8 | WARN 2 | SKIP 0 | PASS 30 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘DOYPAColors.Rmd’ using rmarkdown + ``` + +# DR.SC + +
+ +* Version: 3.5 +* GitHub: https://github.com/feiyoung/DR.SC +* Source code: https://github.com/cran/DR.SC +* Date/Publication: 2025-03-29 15:10:02 UTC +* Number of recursive dependencies: 149 + +Run `revdepcheck::cloud_details(, "DR.SC")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘DR.SC-Ex.R’ failed + The error most likely occurred in: + + > ### Name: drscPlot + > ### Title: tNSE or UMAP plot visualization + > ### Aliases: drscPlot + > ### Keywords: tSNE UMAP + > + > ### ** Examples + > + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.9Mb + sub-directories of 1Mb or more: + data 1.6Mb + libs 9.9Mb + ``` + +# dscore + +
+ +* Version: 1.9.0 +* GitHub: https://github.com/d-score/dscore +* Source code: https://github.com/cran/dscore +* Date/Publication: 2024-06-13 21:40:07 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "dscore")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘getting_started.Rmd’ using rmarkdown + ``` + +# dsem + +
+ +* Version: 1.6.0 +* GitHub: https://github.com/James-Thorson-NOAA/dsem +* Source code: https://github.com/cran/dsem +* Date/Publication: 2025-03-22 01:10:02 UTC +* Number of recursive dependencies: 169 + +Run `revdepcheck::cloud_details(, "dsem")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘dynamic_factor_analysis.Rmd’ using rmarkdown + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'rstan', 'tmbstan' + ``` + +* checking installed package size ... NOTE + ``` + installed size is 83.1Mb + sub-directories of 1Mb or more: + libs 82.3Mb + ``` + +# dsld + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/matloff/dsld +* Source code: https://github.com/cran/dsld +* Date/Publication: 2024-09-13 18:20:09 UTC +* Number of recursive dependencies: 227 + +Run `revdepcheck::cloud_details(, "dsld")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘dsld-Ex.R’ failed + The error most likely occurred in: + + > ### Name: dsldFreqPCoord + > ### Title: dsldFreqPCoord + > ### Aliases: dsldFreqPCoord + > + > ### ** Examples + > + > data(lsa) + > lsa1 <- lsa[,c('fam_inc','ugpa','gender','lsat','race1')] + > dsldFreqPCoord(lsa1,75,'race1') + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘bnlearn’ + ``` + +# DTEBOP2 + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/DTEBOP2 +* Date/Publication: 2025-05-09 10:40:06 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "DTEBOP2")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘DTEBOP2.Rmd’ using rmarkdown + + Quitting from DTEBOP2.Rmd:189-234 [setup] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'DTEBOP2.Rmd' failed with diagnostics: + Can't add `ggtheme` to a object. + --- failed re-building ‘DTEBOP2.Rmd’ + + SUMMARY: processing the following file failed: + ‘DTEBOP2.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# duet + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/duet +* Date/Publication: 2025-01-17 08:50:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "duet")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 1 | PASS 146 ] + Error: Test failures + Execution halted + ``` + +# duke + +
+ +* Version: 0.0.3 +* GitHub: https://github.com/aidangildea/duke +* Source code: https://github.com/cran/duke +* Date/Publication: 2023-12-15 21:50:16 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "duke")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 2. │ └─testthat:::expect_condition_matching(...) + 3. │ └─testthat:::quasi_capture(...) + 4. │ ├─testthat (local) .capture(...) + 5. │ │ └─base::withCallingHandlers(...) + 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) + 7. └─testthat::expect_equal(ggplot2::layer_data(p3)$fill[9], "#B5B5B5") + + [ FAIL 1 | WARN 10 | SKIP 0 | PASS 27 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘duke.Rmd’ using rmarkdown + ``` + +# dynamite + +
+ +* Version: 1.5.6 +* GitHub: https://github.com/ropensci/dynamite +* Source code: https://github.com/cran/dynamite +* Date/Publication: 2025-04-07 06:40:06 UTC +* Number of recursive dependencies: 138 + +Run `revdepcheck::cloud_details(, "dynamite")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > #' @srrstats {G3.0} Floating point numbers are not compared for equality + > #' @srrstats {G5.2, G5.2a, G5.2b, G5.3, RE7.2, RE7.3} + > #' Demonstrated by package tests. + > #' @srrstats {G5.12} Instructions on how to run extended tests is provided in + > #' tests/README.md. + > #' @srrstats {G5.5, G5.6b} Fixed and random seeds are used appropriately in + > #' tests. + ... + 20. └─ggplot2:::add_ggplot(e1, e2, e2name) + 21. └─ggplot2::ggplot_add(object, p, objectname) + 22. ├─S7::S7_dispatch() + 23. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 24. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 25. └─rlang::abort(...) + + [ FAIL 3 | WARN 0 | SKIP 54 | PASS 484 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking whether package ‘dynamite’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: namespace ‘colorspace’ is not available and has been replaced + See ‘/tmp/workdir/dynamite/new/dynamite.Rcheck/00install.out’ for details. + ``` + +* checking installed package size ... NOTE + ``` + installed size is 23.4Mb + sub-directories of 1Mb or more: + R 8.0Mb + data 14.0Mb + ``` + +# dyngen + +
+ +* Version: 1.0.5 +* GitHub: https://github.com/dynverse/dyngen +* Source code: https://github.com/cran/dyngen +* Date/Publication: 2022-10-12 15:22:39 UTC +* Number of recursive dependencies: 206 + +Run `revdepcheck::cloud_details(, "dyngen")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > + > test_check("dyngen") + Loading required package: dyngen + + [ FAIL 1 | WARN 33 | SKIP 0 | PASS 64 ] + + ... + 3. └─dyngen::plot_backbone_statenet(model) + 4. └─ggraph::geom_node_point(data = function(df) df %>% filter(!.data$main)) + 5. └─ggplot2::layer(...) + 6. └─ggplot2:::validate_mapping(mapping, call_env) + 7. └─cli::cli_abort(msg, call = call) + 8. └─rlang::abort(...) + + [ FAIL 1 | WARN 33 | SKIP 0 | PASS 64 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup? + 57 | By default, sampled from {-1, 1} with probabilities {.25, .75}. + | ^ + checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup? + 57 | By default, sampled from {-1, 1} with probabilities {.25, .75}. + | ^ + ``` + +# easyalluvial + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/erblast/easyalluvial +* Source code: https://github.com/cran/easyalluvial +* Date/Publication: 2023-12-07 13:40:06 UTC +* Number of recursive dependencies: 148 + +Run `revdepcheck::cloud_details(, "easyalluvial")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘easyalluvial-Ex.R’ failed + The error most likely occurred in: + + > ### Name: alluvial_model_response + > ### Title: create model response plot + > ### Aliases: alluvial_model_response + > + > ### ** Examples + > + > df = mtcars2[, ! names(mtcars2) %in% 'ids' ] + ... + ℹ In argument: `cyl = (function (f, na_level = "(Missing)") ...`. + Caused by warning: + ! `fct_explicit_na()` was deprecated in forcats 1.0.0. + ℹ Please use `fct_na_value_to_level()` instead. + ℹ The deprecated feature was likely used in the easyalluvial package. + Please report the issue to the authors. + > pred = predict(m, newdata = dspace) + > alluvial_model_response(pred, dspace, imp, degree = 3) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(easyalluvial) + > + > test_check("easyalluvial") + [ FAIL 9 | WARN 3 | SKIP 14 | PASS 39 ] + + ══ Skipped tests (14) ══════════════════════════════════════════════════════════ + ... + • plot_marginal_histograms/mod-num-pred.svg + • plot_marginal_histograms/plot-hist-long-cat-fill.svg + • plot_marginal_histograms/plot-hist-long-cat.svg + • plot_marginal_histograms/plot-hist-long-num-has-fill.svg + • plot_marginal_histograms/plot-hist-long-num-is-fill.svg + • plot_marginal_histograms/plot-hist-long-num.svg + • plot_marginal_histograms/plot-hist-wide-cat.svg + • plot_marginal_histograms/plot-hist-wide-num.svg + Error: Test failures + Execution halted + ``` + +# easybio + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/person-c/easybio +* Source code: https://github.com/cran/easybio +* Date/Publication: 2025-02-12 04:50:02 UTC +* Number of recursive dependencies: 200 + +Run `revdepcheck::cloud_details(, "easybio")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘example-bulk-rna-seq-workflow.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.6Mb + sub-directories of 1Mb or more: + data 4.0Mb + extdata 1.1Mb + ``` + +# easysurv + +
+ +* Version: 2.0.1 +* GitHub: https://github.com/Maple-Health-Group/easysurv +* Source code: https://github.com/cran/easysurv +* Date/Publication: 2024-06-21 10:30:06 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "easysurv")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘easysurv-Ex.R’ failed + The error most likely occurred in: + + > ### Name: get_km + > ### Title: Generate Kaplan-Meier estimates + > ### Aliases: get_km + > + > ### ** Examples + > + > km_results <- get_km( + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + i Actually got a with text: + Can't add `ggsurvfit::add_censor_mark()` to a object. + ── Failure ('test-test_ph.R:2:3'): test_ph function does not return an error ─── + Expected `test_ph(data = easy_lung, time = "time", event = "status", group = "sex")` to run without any errors. + i Actually got a with text: + Can't add `ggsurvfit::add_censor_mark()` to a object. + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 13 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘easysurv.Rmd’ using rmarkdown + + Quitting from easysurv.Rmd:148-157 [km] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'easysurv.Rmd' failed with diagnostics: + Can't add `ggsurvfit::add_censor_mark()` to a object. + --- failed re-building ‘easysurv.Rmd’ + + SUMMARY: processing the following file failed: + ‘easysurv.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# EbayesThresh + +
+ +* Version: 1.4-12 +* GitHub: https://github.com/stephenslab/EbayesThresh +* Source code: https://github.com/cran/EbayesThresh +* Date/Publication: 2017-08-08 04:02:13 UTC +* Number of recursive dependencies: 64 + +Run `revdepcheck::cloud_details(, "EbayesThresh")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ebayesthresh.Rmd’ using rmarkdown + ``` + +# ebvcube + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/EBVcube/ebvcube +* Source code: https://github.com/cran/ebvcube +* Date/Publication: 2025-04-28 13:30:02 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "ebvcube")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 2. ├─base::print(...) + 3. └─tidyterra::geom_spatraster(data = data.raster) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + + [ FAIL 4 | WARN 10 | SKIP 0 | PASS 216 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2 marked UTF-8 strings + ``` + +# ecocbo + +
+ +* Version: 0.12.0 +* GitHub: NA +* Source code: https://github.com/cran/ecocbo +* Date/Publication: 2024-08-21 08:00:02 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "ecocbo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ecocbo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ecocbo-package + > ### Title: ecocbo: Calculating Optimum Sampling Effort in Community Ecology + > ### Aliases: ecocbo-package ecocbo + > ### Keywords: package + > + > ### ** Examples + > + ... + 40. └─vctrs::vec_default_cast(...) + 41. ├─base::withRestarts(...) + 42. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 43. │ └─base (local) doWithOneRestart(return(expr), restart) + 44. └─vctrs::stop_incompatible_cast(...) + 45. └─vctrs::stop_incompatible_type(...) + 46. └─vctrs:::stop_incompatible(...) + 47. └─vctrs:::stop_vctrs(...) + 48. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ── Failure ('test-plot_power.R:6:3'): plots are plotted ──────────────────────── + Expected `plot_power(epiBetaR, m = 4, method = "both")` to run without any conditions. + i Actually got a with text: + i In index: 1. + Caused by error in `vec_slice<-`: + ! Can't convert `na_value` to . + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 25 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ecocbo-guide.Rmd’ using rmarkdown + + Quitting from ecocbo-guide.Rmd:164-167 [step4] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ecocbo-guide.Rmd' failed with diagnostics: + ... + ℹ In index: 1. + Caused by error in `vec_slice<-`: + ! Can't convert `na_value` to . + --- failed re-building ‘ecocbo-guide.Rmd’ + + SUMMARY: processing the following file failed: + ‘ecocbo-guide.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ecochange + +
+ +* Version: 2.9.3.3 +* GitHub: NA +* Source code: https://github.com/cran/ecochange +* Date/Publication: 2025-04-05 11:20:17 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "ecochange")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ecochange-Ex.R’ failed + The error most likely occurred in: + + > ### Name: EBVstats + > ### Title: EBV Stats + > ### Aliases: EBVstats + > + > ### ** Examples + > + > ## RasterBrick of structural Essential Biodiversity Variables + ... + 3. └─ggplot2::ggplot_build(x) + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 6. └─ggplot2:::plot_theme(plot) + 7. └─ggplot2:::check_theme(theme) + 8. └─base::mapply(...) + 9. └─ggplot2 (local) ``(...) + 10. └─cli::cli_abort(...) + 11. └─rlang::abort(...) + Execution halted + ``` + +# ecoCopula + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/ecoCopula +* Date/Publication: 2022-03-02 00:20:02 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "ecoCopula")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘the_basics.Rmd’ using rmarkdown + ``` + +# ecolRxC + +
+ +* Version: 0.1.1-10 +* GitHub: NA +* Source code: https://github.com/cran/ecolRxC +* Date/Publication: 2023-03-31 07:50:02 UTC +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "ecolRxC")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ecolRxC-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.ecolRxC + > ### Title: Graphical representation of a RxC ecological inference (vote + > ### transfer) matrix + > ### Aliases: plot.ecolRxC + > + > ### ** Examples + > + ... + ! Unknown scale type: + Backtrace: + ▆ + 1. ├─base::plot(example, show.plot = FALSE) + 2. └─ecolRxC:::plot.ecolRxC(example, show.plot = FALSE) + 3. └─ggplot2::scale_fill_continuous(...) + 4. └─ggplot2:::scale_backward_compatibility(...) + 5. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 6. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) ecolRxC.Rd:161-166: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:167-175: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:176-178: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:179-185: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:186-192: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:193-201: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:202-208: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:209-216: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ecolRxC.Rd:217-221: Lost braces in \itemize; meant \describe ? + ``` + +# economiccomplexity + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/pachadotdev/economiccomplexity +* Source code: https://github.com/cran/economiccomplexity +* Date/Publication: 2024-12-13 04:00:01 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "economiccomplexity")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘economiccomplexity.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.2Mb + sub-directories of 1Mb or more: + data 4.0Mb + doc 1.7Mb + libs 2.1Mb + ``` + +# ecpc + +
+ +* Version: 3.1.1 +* GitHub: NA +* Source code: https://github.com/cran/ecpc +* Date/Publication: 2023-02-27 21:12:30 UTC +* Number of recursive dependencies: 136 + +Run `revdepcheck::cloud_details(, "ecpc")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ecpc-Ex.R’ failed + The error most likely occurred in: + + > ### Name: visualiseGroupset + > ### Title: Visualise a group set + > ### Aliases: visualiseGroupset + > + > ### ** Examples + > + > #groups without hierarchical constraints + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─ecpc::visualiseGroupset(groupset, c(0.5, 2)) + 2. └─ggraph::geom_node_label(...) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +# EDOIF + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/DarkEyes/EDOIF +* Source code: https://github.com/cran/EDOIF +* Date/Publication: 2025-04-28 07:20:02 UTC +* Number of recursive dependencies: 58 + +Run `revdepcheck::cloud_details(, "EDOIF")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EDOIF-Ex.R’ failed + The error most likely occurred in: + + > ### Name: EDOIF + > ### Title: Empirical Distribution Ordering Inference Framework (EDOIF) + > ### Aliases: EDOIF + > + > ### ** Examples + > + > # Generate simulation data + ... + Mean difference of C5 (n=100) minus C4 (n=100): C4 ≺ C5 + :p-val 0.0000 + Mean Diff:19.274111 95CI:[ 16.849992,21.820247] + + > + > # Plot results in graphic mode + > + > plot(resultObj) + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘EDOIF_demo.Rmd’ using knitr + + Quitting from EDOIF_demo.Rmd:53-55 [Fig1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + + Error: processing vignette 'EDOIF_demo.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘EDOIF_demo.Rmd’ + + SUMMARY: processing the following file failed: + ‘EDOIF_demo.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# effectplots + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/mayer79/effectplots +* Source code: https://github.com/cran/effectplots +* Date/Publication: 2025-03-09 09:40:01 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "effectplots")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘effectplots-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ale + > ### Title: Accumulated Local Effects (ALE) + > ### Aliases: ale ale.default ale.ranger ale.explainer ale.H2OModel + > + > ### ** Examples + > + > fit <- lm(Sepal.Length ~ ., data = iris) + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 17. └─ggplot2:::add_ggplot(e1, e2, e2name) + 18. └─ggplot2::ggplot_add(object, p, objectname) + 19. ├─S7::S7_dispatch() + 20. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 21. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 22. └─rlang::abort(...) + + [ FAIL 5 | WARN 0 | SKIP 0 | PASS 216 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘h2o’ + ``` + +# EGAnet + +
+ +* Version: 2.3.0 +* GitHub: https://github.com/hfgolino/EGAnet +* Source code: https://github.com/cran/EGAnet +* Date/Publication: 2025-04-09 23:10:15 UTC +* Number of recursive dependencies: 185 + +Run `revdepcheck::cloud_details(, "EGAnet")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EGAnet-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compare.EGA.plots + > ### Title: Visually Compare Two or More 'EGAnet' plots + > ### Aliases: compare.EGA.plots + > + > ### ** Examples + > + > # Obtain WMT-2 data + ... + > wmt <- wmt2[,7:24] + > + > # Draw random samples of 300 cases + > sample1 <- wmt[sample(1:nrow(wmt), 300),] + > sample2 <- wmt[sample(1:nrow(wmt), 300),] + > + > # Estimate EGAs + > ega1 <- EGA(sample1) + Error: C stack usage 9965188 is too close to the limit + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.2Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 4.0Mb + ``` + +# egg + +
+ +* Version: 0.4.5 +* GitHub: NA +* Source code: https://github.com/cran/egg +* Date/Publication: 2019-07-13 06:00:27 UTC +* Number of recursive dependencies: 33 + +Run `revdepcheck::cloud_details(, "egg")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘egg-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tag_facet + > ### Title: tag_facet + > ### Aliases: tag_facet + > + > ### ** Examples + > + > library(ggplot2) + ... + + red = rep(letters[1:3], 30), + + blue = c(rep(1, 30), rep(2, 30), rep(3, 30))) + > + > p <- ggplot(mydf) + + + geom_point(aes(x = x, y = y)) + + + facet_wrap( + + ~ red + blue) + > tag_facet(p) + Error: Can't get S7 properties with `$`. Did you mean `gb@layout`? + Execution halted + ``` + +# EGM + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/shah-in-boots/EGM +* Source code: https://github.com/cran/EGM +* Date/Publication: 2024-05-23 16:10:05 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "EGM")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(EGM) + Loading required package: vctrs + Loading required package: data.table + > EGM::set_wfdb_path("/usr/local/bin") + > + > test_check("EGM") + ... + 7. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + ── Failure ('test-ggm.R:63:2'): theming works ────────────────────────────────── + g$labels$x (`actual`) not equal to "sample" (`expected`). + + `actual` is NULL + `expected` is a character vector ('sample') + + [ FAIL 2 | WARN 8 | SKIP 19 | PASS 42 ] + Error: Test failures + Execution halted + ``` + +# eHDPrep + +
+ +* Version: 1.3.3 +* GitHub: https://github.com/overton-group/eHDPrep +* Source code: https://github.com/cran/eHDPrep +* Date/Publication: 2023-06-05 18:20:12 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "eHDPrep")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘Introduction_to_eHDPrep.Rmd’ using rmarkdown + + Quitting from Introduction_to_eHDPrep.Rmd:768-779 [unnamed-chunk-47] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Introduction_to_eHDPrep.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘Introduction_to_eHDPrep.Rmd’ + + SUMMARY: processing the following file failed: + ‘Introduction_to_eHDPrep.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 7 marked UTF-8 strings + ``` + +# eiCircles + +
+ +* Version: 0.0.1-12 +* GitHub: NA +* Source code: https://github.com/cran/eiCircles +* Date/Publication: 2025-04-11 11:20:01 UTC +* Number of recursive dependencies: 28 + +Run `revdepcheck::cloud_details(, "eiCircles")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘eiCircles-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.BPF + > ### Title: Graphical representation of a RxC ecological inference (vote + > ### transfer) matrix + > ### Aliases: plot.BPF + > + > ### ** Examples + > + ... + ! Unknown scale type: + Backtrace: + ▆ + 1. ├─base::plot(example, show.plot = FALSE) + 2. └─eiCircles:::plot.BPF(example, show.plot = FALSE) + 3. └─ggplot2::scale_fill_continuous(...) + 4. └─ggplot2:::scale_backward_compatibility(...) + 5. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 6. └─rlang::abort(...) + Execution halted + ``` + +# EIX + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/ModelOriented/EIX +* Source code: https://github.com/cran/EIX +* Date/Publication: 2021-03-23 08:10:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "EIX")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EIX-Ex.R’ failed + The error most likely occurred in: + + > ### Name: interactions + > ### Title: Importance of interactions and pairs in the model + > ### Aliases: interactions + > + > ### ** Examples + > + > library("EIX") + ... + 5: satisfaction_level time_spend_company 332.18097 1 + 6: average_montly_hours time_spend_company 262.55289 1 + 7: average_montly_hours last_evaluation 249.13687 1 + 8: satisfaction_level average_montly_hours 168.38992 1 + 9: satisfaction_level number_project 87.09535 1 + 10: time_spend_company last_evaluation 86.27449 1 + > plot(inter) + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘EIX.Rmd’ using rmarkdown + ``` + +# eks + +
+ +* Version: 1.1.0 +* GitHub: NA +* Source code: https://github.com/cran/eks +* Date/Publication: 2025-05-18 17:30:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "eks")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘eks-Ex.R’ failed + The error most likely occurred in: + + > ### Name: contour + > ### Title: Contour functions for tidy and geospatial kernel estimates + > ### Aliases: contour_breaks contourLevels.tidy_ks contourLevels.sf_ks + > ### st_get_contour + > ### Keywords: smooth + > + > ### ** Examples + ... + 12. │ └─base::withCallingHandlers(...) + 13. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) + 14. └─l$compute_statistic(d, layout) + 15. └─ggplot2 (local) compute_statistic(..., self = self) + 16. └─self$stat$compute_layer(data, self$computed_stat_params, layout) + 17. └─ggplot2 (local) compute_layer(..., self = self) + 18. └─ggplot2:::check_required_aesthetics(...) + 19. └─cli::cli_abort(...) + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘tidysf_kde.Rmd’ using rmarkdown + + Quitting from tidysf_kde.Rmd:38-43 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'tidysf_kde.Rmd' failed with diagnostics: + ... + ℹ Error occurred in the 2nd layer. + Caused by error in `compute_layer()`: + ! `stat_contour_ks()` requires the following missing aesthetics: z. + --- failed re-building ‘tidysf_kde.Rmd’ + + SUMMARY: processing the following file failed: + ‘tidysf_kde.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# EMMIXgene + +
+ +* Version: 0.1.4 +* GitHub: NA +* Source code: https://github.com/cran/EMMIXgene +* Date/Publication: 2024-01-21 11:22:56 UTC +* Number of recursive dependencies: 32 + +Run `revdepcheck::cloud_details(, "EMMIXgene")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EMMIXgene-Ex.R’ failed + The error most likely occurred in: + + > ### Name: all_cluster_tissues + > ### Title: Clusters tissues using all group means + > ### Aliases: all_cluster_tissues + > + > ### ** Examples + > + > + > example <- plot_single_gene(alon_data,1) + Warning: Use of `df$x` is discouraged. + ℹ Use `x` instead. + Error: Can't get S7 properties with `$`. Did you mean `p2@data`? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.2Mb + sub-directories of 1Mb or more: + data 3.0Mb + libs 5.1Mb + ``` + +# EMMIXmfa + +
+ +* Version: 2.0.14 +* GitHub: https://github.com/suren-rathnayake/EMMIXmfa +* Source code: https://github.com/cran/EMMIXmfa +* Date/Publication: 2024-01-25 20:30:02 UTC +* Number of recursive dependencies: 45 + +Run `revdepcheck::cloud_details(, "EMMIXmfa")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EMMIXmfa-Ex.R’ failed + The error most likely occurred in: + + > ### Name: factor_scores + > ### Title: Computes Factor Scores + > ### Aliases: factor_scores factor_scores.mcfa factor_scores.mctfa + > ### plot.emmix + > ### Keywords: cluster multivariate models + > + > ### ** Examples + ... + > # Allocating new samples to the clusters + > Y <- iris[-c(sel_subset), -5] + > Y <- as.matrix(Y) + > clust <- predict(model, Y) + > + > fa_scores <- factor_scores(model, Y) + > # Visualizing new data in factor space + > plot_factors(fa_scores, type = "Umean", clust = clust) + Error: C stack usage 9965348 is too close to the limit + Execution halted + ``` + +# ENMTools + +
+ +* Version: 1.1.2 +* GitHub: NA +* Source code: https://github.com/cran/ENMTools +* Date/Publication: 2024-01-16 12:50:11 UTC +* Number of recursive dependencies: 286 + +Run `revdepcheck::cloud_details(, "ENMTools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ENMTools) + Loading required package: dismo + Loading required package: raster + Loading required package: sp + > + > test_check("ENMTools") + ... + `actual`: FALSE + `expected`: TRUE + Backtrace: + ▆ + 1. └─ENMTools (local) expect_enmtools_model(cyreni.glm.raster2) at test_ENMTools.R:249:3 + 2. └─testthat::expect_true(...) at test_ENMTools.R:66:3 + + [ FAIL 9 | WARN 0 | SKIP 3 | PASS 167 ] + Error: Test failures + Execution halted + ``` + +# enrichR + +
+ +* Version: 3.4 +* GitHub: NA +* Source code: https://github.com/cran/enrichR +* Date/Publication: 2025-02-02 22:50:06 UTC +* Number of recursive dependencies: 54 + +Run `revdepcheck::cloud_details(, "enrichR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘enrichR.Rmd’ using rmarkdown + + Quitting from enrichR.Rmd:159-164 [unnamed-chunk-15] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'enrichR.Rmd' failed with diagnostics: + Unknown scale type: + --- failed re-building ‘enrichR.Rmd’ + + SUMMARY: processing the following file failed: + ‘enrichR.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# EntropicStatistics + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/EntropicStatistics +* Date/Publication: 2023-05-29 17:40:02 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "EntropicStatistics")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EntropicStatistics-Ex.R’ failed + The error most likely occurred in: + + > ### Name: HeatMap + > ### Title: HeatMap for Distribution Visualization + > ### Aliases: HeatMap + > ### Keywords: heatmap gse + > + > ### ** Examples + > + ... + + binom_0.8 = sample_8, binom_0.9 = sample_9, Poisson_1 = sample_poisson_1, + + Poisson_2 = sample_poisson_2, Poisson_3 = sample_poisson_3, Poisson_4 = sample_poisson_4, + + Poisson_5 = sample_poisson_5, Poisson_6 = sample_poisson_6, Poisson_7 = sample_poisson_7, + + Poisson_8 = sample_poisson_8, Poisson_9 = sample_poisson_9) + > + > ## Obtain the heatmap for all sublists in the data. + > HeatMap(data_samples) + Error: object properties are invalid: + - @face must be or , not + Execution halted + ``` + +# EnvStats + +
+ +* Version: 3.1.0 +* GitHub: https://github.com/alexkowa/EnvStats +* Source code: https://github.com/cran/EnvStats +* Date/Publication: 2025-04-24 12:00:07 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "EnvStats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EnvStats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: stat_mean_sd_text + > ### Title: Add Text Indicating the Mean and Standard Deviation to a ggplot2 + > ### Plot + > ### Aliases: stat_mean_sd_text + > ### Keywords: aplot + > + > ### ** Examples + ... + > # Example 6: + > + > # Repeat Example 1, but: + > # 1) use the same colors for the text that are used for each group, + > # 2) use the bold monospaced font. + > #------------------------------------------------------------------ + > + > mat <- ggplot_build(p)$data[[1]] + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@data`? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.8Mb + sub-directories of 1Mb or more: + R 3.5Mb + help 7.5Mb + ``` + +# epiCleanr + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/truenomad/epiCleanr +* Source code: https://github.com/cran/epiCleanr +* Date/Publication: 2023-09-28 12:20:05 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "epiCleanr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘epiCleanr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: consistency_check + > ### Title: Consistency Check Function + > ### Aliases: consistency_check + > + > ### ** Examples + > + > # check the consistency between malaria tests and cases + ... + 18. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 19. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 20. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 21. │ └─base::withCallingHandlers(...) + 22. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 23. ├─S7::S7_dispatch() + 24. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 25. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 26. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.6Mb + sub-directories of 1Mb or more: + doc 2.9Mb + help 2.5Mb + ``` + +# epiCo + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/epiverse-trace/epiCo +* Source code: https://github.com/cran/epiCo +* Date/Publication: 2025-01-15 10:10:01 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "epiCo")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + 5. └─epiCo:::occupation_plot_circular(occupation_data) + 6. └─ggraph::geom_node_circle(ggplot2::aes(fill = .data$sub_major)) + 7. └─ggplot2::layer(...) + 8. └─ggplot2:::validate_mapping(mapping, call_env) + 9. └─cli::cli_abort(msg, call = call) + 10. └─rlang::abort(...) + + [ FAIL 1 | WARN 12 | SKIP 0 | PASS 115 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.2Mb + sub-directories of 1Mb or more: + data 2.0Mb + extdata 2.9Mb + ``` + +# EpiForsk + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/EpiForsk +* Date/Publication: 2024-02-26 13:40:05 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "EpiForsk")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Contributing.Rmd’ using rmarkdown + --- finished re-building ‘Contributing.Rmd’ + + --- re-building ‘Writing_functions.Rmd’ using rmarkdown + --- finished re-building ‘Writing_functions.Rmd’ + + --- re-building ‘andh_forest_plot.Rmd’ using rmarkdown + + Quitting from andh_forest_plot.Rmd:211-241 [unnamed-chunk-8] + ... + Error: processing vignette 'andh_forest_plot.Rmd' failed with diagnostics: + object properties are invalid: + - @face must be a string, not a character vector + --- failed re-building ‘andh_forest_plot.Rmd’ + + SUMMARY: processing the following file failed: + ‘andh_forest_plot.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# EpiNow2 + +
+ +* Version: 1.7.1 +* GitHub: https://github.com/epiforecasts/EpiNow2 +* Source code: https://github.com/cran/EpiNow2 +* Date/Publication: 2025-02-19 23:40:09 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "EpiNow2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EpiNow2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: regional_summary + > ### Title: Regional Summary Output + > ### Aliases: regional_summary + > + > ### ** Examples + > + > # get example output from regional_epinow model + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(EpiNow2) + + Attaching package: 'EpiNow2' + + The following object is masked from 'package:stats': + ... + 20. └─ggplot2:::add_ggplot(e1, e2, e2name) + 21. └─ggplot2::ggplot_add(object, p, objectname) + 22. ├─S7::S7_dispatch() + 23. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 24. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 25. └─rlang::abort(...) + + [ FAIL 3 | WARN 0 | SKIP 30 | PASS 263 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 237.5Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 1.5Mb + libs 232.8Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# epiphy + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/chgigot/epiphy +* Source code: https://github.com/cran/epiphy +* Date/Publication: 2023-11-16 11:20:10 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "epiphy")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘epiphy-Ex.R’ failed + The error most likely occurred in: + + > ### Name: clump + > ### Title: Regroup observational data into even clumps of individuals. + > ### Aliases: clump clump.intensity + > + > ### ** Examples + > + > my_incidence <- incidence(tomato_tswv$field_1929) + ... + 19. │ └─ggplot2 (local) setup_params(...) + 20. │ └─ggplot2:::make_summary_fun(...) + 21. │ └─rlang::as_function(fun.data) + 22. │ └─base::get(x, envir = env, mode = "function") + 23. └─base::.handleSimpleError(...) + 24. └─rlang (local) h(simpleError(msg, call)) + 25. └─handlers[[1L]](cnd) + 26. └─cli::cli_abort(...) + 27. └─rlang::abort(...) + Execution halted + ``` + +# episensr + +
+ +* Version: 2.0.0 +* GitHub: NA +* Source code: https://github.com/cran/episensr +* Date/Publication: 2025-05-15 14:20:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "episensr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘b_probabilistic.Rmd’ using rmarkdown + ``` + +# epos + +
+ +* Version: 1.1 +* GitHub: https://github.com/bernd-mueller/epos +* Source code: https://github.com/cran/epos +* Date/Publication: 2024-03-15 10:10:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "epos")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(epos) + > + > test_check("epos") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + [1] 1 - 11 == -10 + Backtrace: + ▆ + 1. └─testthat::expect_that(length(tanimotobaseline), equals(11)) at test_createTanimotoBaseline.R:47:3 + 2. └─testthat (local) condition(object) + 3. └─testthat::expect_equal(x, expected, ..., expected.label = label) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘testthat’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 15 marked UTF-8 strings + ``` + +# EQUALSTATS + +
+ +* Version: 0.5.0 +* GitHub: NA +* Source code: https://github.com/cran/EQUALSTATS +* Date/Publication: 2024-09-23 08:30:02 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "EQUALSTATS")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EQUALSTATS-Ex.R’ failed + The error most likely occurred in: + + > ### Name: function.Survival_Analysis + > ### Title: Perform Survival Analysis + > ### Aliases: function.Survival_Analysis + > + > ### ** Examples + > + > # Create simulated data #### + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘lmerTest’ + ``` + +# equatiomatic + +
+ +* Version: 0.3.6 +* GitHub: https://github.com/datalorax/equatiomatic +* Source code: https://github.com/cran/equatiomatic +* Date/Publication: 2025-03-10 16:50:09 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "equatiomatic")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘colors.Rmd’ using rmarkdown + --- finished re-building ‘colors.Rmd’ + + --- re-building ‘equatiomatic.Rmd’ using rmarkdown + --- finished re-building ‘equatiomatic.Rmd’ + + --- re-building ‘forecast-arima.Rmd’ using rmarkdown + --- finished re-building ‘forecast-arima.Rmd’ + + --- re-building ‘lme4-lmer.Rmd’ using rmarkdown + --- finished re-building ‘lme4-lmer.Rmd’ + + --- re-building ‘plotting-integration.Rmd’ using rmarkdown + ``` + +# ern + +
+ +* Version: 2.1.2 +* GitHub: NA +* Source code: https://github.com/cran/ern +* Date/Publication: 2025-01-16 18:20:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "ern")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ern-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_diagnostic_ww + > ### Title: Diagnostic plot for R estimation from wastewater data + > ### Aliases: plot_diagnostic_ww + > + > ### ** Examples + > + > + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 155 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘est-rt.Rmd’ using rmarkdown + ``` + +# errors + +
+ +* Version: 0.4.3 +* GitHub: https://github.com/r-quantities/errors +* Source code: https://github.com/cran/errors +* Date/Publication: 2025-01-18 18:10:05 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "errors")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘errors-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_errors + > ### Title: Errorbars for 'errors' objects + > ### Aliases: geom_errors + > + > ### ** Examples + > + > if (requireNamespace("ggplot2", quietly=TRUE)) { + ... + 21. │ └─self$draw_panel(data, panel_params, coord, width = 0.05, height = 0.05) + 22. │ └─errors (local) draw_panel(...) + 23. │ ├─base::append(...) + 24. │ └─ggplot2::GeomErrorbarh$draw_panel(...) + 25. └─base::.handleSimpleError(...) + 26. └─rlang (local) h(simpleError(msg, call)) + 27. └─handlers[[1L]](cnd) + 28. └─cli::cli_abort(...) + 29. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘rjournal.Rmd’ using rmarkdown + + Quitting from rjournal.Rmd:252-272 [plot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'rjournal.Rmd' failed with diagnostics: + ... + ℹ Error occurred in the 2nd layer. + Caused by error in `draw_panel()`: + ! unused argument (height = NULL) + --- failed re-building ‘rjournal.Rmd’ + + SUMMARY: processing the following file failed: + ‘rjournal.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘rjournal.Rmd’ using rmarkdown + tlmgr: package repository https://us.mirrors.cicku.me/ctan/systems/texlive/tlnet (verified) + [1/1, ??:??/??:??] install: subfig [7k] + running mktexlsr ... + done running mktexlsr. + tlmgr: package log updated: /opt/TinyTeX/texmf-var/web2c/tlmgr.log + tlmgr: command log updated: /opt/TinyTeX/texmf-var/web2c/tlmgr-commands.log + + tlmgr: Remote database at https://mirrors.mit.edu/CTAN/systems/texlive/tlnet + ... + + Error: processing vignette 'rjournal.Rmd' failed with diagnostics: + LaTeX failed to compile /tmp/workdir/errors/old/errors.Rcheck/vign_test/errors/vignettes/rjournal.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See rjournal.log for more info. + --- failed re-building ‘rjournal.Rmd’ + + SUMMARY: processing the following file failed: + ‘rjournal.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# esci + +
+ +* Version: 1.0.7 +* GitHub: https://github.com/rcalinjageman/esci +* Source code: https://github.com/cran/esci +* Date/Publication: 2025-02-22 03:20:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "esci")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘esci-Ex.R’ failed + The error most likely occurred in: + + > ### Name: estimate_magnitude + > ### Title: Estimates for a continuous variable with no grouping + > ### (single-group design) + > ### Aliases: estimate_magnitude + > + > ### ** Examples + > + ... + + outcome_variable = transcription + + ) + > + > # To visualize the estimate + > myplot_from_raw <- esci::plot_magnitude( + + estimate_from_raw, + + effect_size = "median" + + ) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(esci) + > + > test_check("esci") + [1] "WARNING: ratio-scale scores cannot be negative" + [1] "WARNING: ratio-scale scores cannot be negative" + [1] "WARNING: ratio-scale scores cannot be negative" + ... + 1. ├─base::suppressWarnings(myplot <- plot_pdiff(estimate)) at test_estimate_pdiff_two.R:161:3 + 2. │ └─base::withCallingHandlers(...) + 3. └─esci::plot_pdiff(estimate) + 4. └─esci:::plot_mdiff_base(...) + 5. ├─p$data + 6. └─S7:::`$.S7_object`(p, "data") + + [ FAIL 12 | WARN 0 | SKIP 52 | PASS 2832 ] + Error: Test failures + Execution halted + ``` + +# esquisse + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/dreamRs/esquisse +* Source code: https://github.com/cran/esquisse +* Date/Publication: 2025-02-21 12:30:14 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "esquisse")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(esquisse) + > + > test_check("esquisse") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-safe_ggplot.R:11:3'): safe_ggplot (no error) works ─────────── + `p` inherits from `'ggplot2::ggplot_built'/'S7_object'` not `'character'`. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ] + Error: Test failures + Execution halted + ``` + +# eudract + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/shug0131/eudraCT +* Source code: https://github.com/cran/eudract +* Date/Publication: 2025-03-20 17:20:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "eudract")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘eudract-Ex.R’ failed + The error most likely occurred in: + + > ### Name: dot_plot + > ### Title: creates a dot-plot of safety data showing the absolute and + > ### relative risks + > ### Aliases: dot_plot + > + > ### ** Examples + > + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(eudract) + > + > test_check("eudract") + [ FAIL 1 | WARN 3 | SKIP 4 | PASS 75 ] + + ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ + ... + + [ FAIL 1 | WARN 3 | SKIP 4 | PASS 75 ] + Deleting unused snapshots: + • dotplot/dotplot-1group.svg + • dotplot/dotplot-3groups.svg + • dotplot/dotplot-ref-rr.svg + • dotplot/dotplot-ref.svg + • dotplot/dotplot.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘eudract.Rmd’ using rmarkdown + --- finished re-building ‘eudract.Rmd’ + + --- re-building ‘standard_reporting.Rmd’ using rmarkdown + + Quitting from standard_reporting.Rmd:65-67 [dotplot_sae] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ... + + Error: processing vignette 'standard_reporting.Rmd' failed with diagnostics: + Can't add `e2` to a object. + --- failed re-building ‘standard_reporting.Rmd’ + + SUMMARY: processing the following file failed: + ‘standard_reporting.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# eventstudyr + +
+ +* Version: 1.1.3 +* GitHub: https://github.com/JMSLab/eventstudyr +* Source code: https://github.com/cran/eventstudyr +* Date/Publication: 2024-03-04 15:00:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "eventstudyr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(eventstudyr) + > + > test_check("eventstudyr") + Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument. + Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument. + Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument. + ... + `expected` is a character vector ('ci_lower') + ── Failure ('test-EventStudyPlot.R:128:5'): confidence intervals are appropriately present or absent ── + p_ci$labels$ymax (`actual`) not equal to "ci_upper" (`expected`). + + `actual` is NULL + `expected` is a character vector ('ci_upper') + + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 258 ] + Error: Test failures + Execution halted + ``` + +# EvoPhylo + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/tiago-simoes/EvoPhylo +* Source code: https://github.com/cran/EvoPhylo +* Date/Publication: 2022-11-03 17:00:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "EvoPhylo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EvoPhylo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: clockrate_reg_plot + > ### Title: Plot regression lines between sets of rates + > ### Aliases: clockrate_reg_plot + > + > ### ** Examples + > + > # See vignette("rates-selection") for how to use this + > # function as part of an analysis pipeline + > + > data("RateTable_Means_3p_Clades") + > + > #Plot correlations between clocks 1 and 3 + > clockrate_reg_plot(RateTable_Means_3p_Clades, + + clock_x = 1, clock_y = 3) + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(regplot)@data`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘char-part.Rmd’ using rmarkdown + + Quitting from char-part.Rmd:28-30 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'char-part.Rmd' failed with diagnostics: + The package "deeptime" (>= 0.2.0) is required. + ... + Error: processing vignette 'rates-selection_MrBayes.Rmd' failed with diagnostics: + The package "deeptime" (>= 0.2.0) is required. + --- failed re-building ‘rates-selection_MrBayes.Rmd’ + + SUMMARY: processing the following files failed: + ‘char-part.Rmd’ ‘fbd-params.Rmd’ ‘offset_handling.Rmd’ + ‘rates-selection_BEAST2.Rmd’ ‘rates-selection_MrBayes.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.8Mb + sub-directories of 1Mb or more: + data 2.5Mb + doc 1.6Mb + extdata 2.4Mb + ``` + +# EWSmethods + +
+ +* Version: 1.3.1 +* GitHub: https://github.com/duncanobrien/EWSmethods +* Source code: https://github.com/cran/EWSmethods +* Date/Publication: 2024-05-15 16:20:02 UTC +* Number of recursive dependencies: 138 + +Run `revdepcheck::cloud_details(, "EWSmethods")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + i Actually got a with text: + The `plot.margin` theme element must be a vector of length 4 + ── Failure ('test-univariate_composite_ews_wrapper.R:28:3'): uniEWS works ────── + Expected `plot(eg.uniEWS2)` to run without any errors. + i Actually got a with text: + The `plot.margin` theme element must be a vector of length 4 + + [ FAIL 6 | WARN 28 | SKIP 2 | PASS 64 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ews_assessments.Rmd’ using rmarkdown + ``` + +# expertsurv + +
+ +* Version: 1.4.0 +* GitHub: NA +* Source code: https://github.com/cran/expertsurv +* Date/Publication: 2025-02-20 18:00:02 UTC +* Number of recursive dependencies: 196 + +Run `revdepcheck::cloud_details(, "expertsurv")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘expertsurv-Ex.R’ failed + The error most likely occurred in: + + > ### Name: psa.plot + > ### Title: Graphical depiction of the probabilistic sensitivity analysis + > ### for the survival curves - ported from 'survHE' + > ### Aliases: psa.plot + > ### Keywords: Bootstrap Probabilistic Survival analysis models sensitivity + > + > ### ** Examples + ... + + method="mle", + + pool_type = "log pool", + + opinion_type = "survival", + + times_expert = timepoint_expert, + + param_expert = param_expert_example1) + > + > p.mle = make.surv(example1,mod= 2,t = 1:30, nsim=1000) #Plot the Gompertz model + > psa.plot(p.mle , name_labs = "PSA", labs = "Gompertz", col ="blue") + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(psa.plot)@data`? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.7Mb + sub-directories of 1Mb or more: + R 1.5Mb + Report 1.3Mb + app 2.7Mb + doc 1.2Mb + libs 3.6Mb + ``` + +# explainer + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/PERSIMUNE/explainer +* Source code: https://github.com/cran/explainer +* Date/Publication: 2024-09-30 17:30:02 UTC +* Number of recursive dependencies: 185 + +Run `revdepcheck::cloud_details(, "explainer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘explainer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: eDecisionCurve + > ### Title: Decision Curve Plot + > ### Aliases: eDecisionCurve + > + > ### ** Examples + > + > library("explainer") + ... + + ) + > mylrn$train(maintask, splits$train) + > myplot <- eDecisionCurve( + + task = maintask, + + trained_model = mylrn, + + splits = splits, + + seed = seed + + ) + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘ggpmisc’ + All declared Imports should be used. + ``` + +# exploratory + +
+ +* Version: 0.3.31 +* GitHub: https://github.com/jinkim3/exploratory +* Source code: https://github.com/cran/exploratory +* Date/Publication: 2023-10-10 10:30:05 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "exploratory")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘exploratory-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compare_groups + > ### Title: Compare groups + > ### Aliases: compare_groups + > + > ### ** Examples + > + > compare_groups(data = iris, iv_name = "Species", dv_name = "Sepal.Length") + ... + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggplot2 package. + Please report the issue at . + Warning in geom_errorbar(mapping = mapping, data = data, stat = stat, position = position, : + Ignoring unknown parameters: `height` + $histogram + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +# ez + +
+ +* Version: 4.4-0 +* GitHub: https://github.com/mike-lawrence/ez +* Source code: https://github.com/cran/ez +* Date/Publication: 2016-11-02 18:17:31 +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "ez")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ez-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ezPlot + > ### Title: Plot data from a factorial experiment + > ### Aliases: ezPlot + > + > ### ** Examples + > + > #Read in the ANT data (see ?ANT). + ... + Backtrace: + ▆ + 1. └─ez::ezPlot(...) + 2. ├─base::eval(parse(text = p)) + 3. │ └─base::eval(parse(text = p)) + 4. └─ggplot2::facet_grid(facets = . ~ group, scales = "free_y") + 5. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") + 6. └─lifecycle:::deprecate_stop0(msg) + 7. └─rlang::cnd_signal(...) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) ez-package.Rd:19: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:20: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:21: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:22: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:23: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:24: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:26: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:27: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:28: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:29: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:30: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:32: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ez-package.Rd:33: Lost braces in \itemize; meant \describe ? + ``` + +# ezEDA + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/kviswana/ezEDA +* Source code: https://github.com/cran/ezEDA +* Date/Publication: 2021-06-29 04:40:10 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "ezEDA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ezEDA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: category_contribution + > ### Title: Plot the contribution of different categories to a measure + > ### Aliases: category_contribution + > + > ### ** Examples + > + > category_contribution(ggplot2::diamonds, cut, price) + Error: C stack usage 9961716 is too close to the limit + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ezEDA) + > + > test_check("ezEDA") + [ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Error ('test_two_measures_relationship.R:19:3'): y axis is labeled 'hwy' ──── + Error in `expect_match(p$labels$y, "hwy")`: is.character(act$val) is not TRUE + Backtrace: + ▆ + 1. └─testthat::expect_match(p$labels$y, "hwy") at test_two_measures_relationship.R:19:3 + 2. └─base::stopifnot(is.character(act$val)) + + [ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ezEDA.Rmd’ using rmarkdown + + Quitting from ezEDA.Rmd:86-90 [measure_change_over_time_wide] + Error: processing vignette 'ezEDA.Rmd' failed with diagnostics: + C stack usage 9965108 is too close to the limit + --- failed re-building ‘ezEDA.Rmd’ + + SUMMARY: processing the following file failed: + ‘ezEDA.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# EZFragility + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/EZFragility +* Date/Publication: 2025-04-10 14:40:09 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "EZFragility")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘EZFragility-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotFragHeatmap + > ### Title: Visualization functions (raw signal, fragility matrix) + > ### Aliases: plotFragHeatmap plotFragQuantile plotFragDistribution + > + > ### ** Examples + > + > + ... + 18. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 19. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 20. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 21. │ └─base::withCallingHandlers(...) + 22. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 23. ├─S7::S7_dispatch() + 24. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(...) + 25. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 26. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + { + S7::new_object(elements, complete = complete, validate = validate) + }, class = c("S7_class", "S7_object")), complete = FALSE, validate = TRUE), + plot = , ...)`: Can't merge the `axis.text.y` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 33 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Intro_to_EZFragility.Rmd’ using rmarkdown + ``` + +# ezplot + +
+ +* Version: 0.7.13 +* GitHub: NA +* Source code: https://github.com/cran/ezplot +* Date/Publication: 2024-01-28 11:30:05 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "ezplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ezplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: variable_plot + > ### Title: variable_plot + > ### Aliases: variable_plot + > + > ### ** Examples + > + > suppressPackageStartupMessages(library(tsibble)) + > library(tsibbledata) + > variable_plot(ansett, "Week", "Passengers", facet_x = "Class", yoy = TRUE) + Error: object properties are invalid: + - @linewidth must be , , or , not + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ezplot) + > suppressPackageStartupMessages(library(tsibble)) + > + > test_check("ezplot") + [ FAIL 2 | WARN 6 | SKIP 0 | PASS 90 ] + + ... + 2. ├─ggplot2::theme(...) + 3. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL) + 4. │ └─base::mget(args, envir = env) + 5. └─ggplot2::element_rect(fill = NA, colour = NA, linewidth = NA) + 6. └─S7::new_object(...) + 7. └─S7::validate(object, recursive = !parent_validated) + + [ FAIL 2 | WARN 6 | SKIP 0 | PASS 90 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘bar_plot.Rmd’ using rmarkdown + ``` + +# ezr + +
+ +* Version: 0.1.5 +* GitHub: https://github.com/jinkim3/ezr +* Source code: https://github.com/cran/ezr +* Date/Publication: 2020-11-25 10:30:08 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "ezr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ezr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: histogram_by_group + > ### Title: Histogram by group + > ### Aliases: histogram_by_group + > + > ### ** Examples + > + > histogram_by_group(data = mtcars, iv_name = "cyl", dv_name = "mpg") + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggplot2 package. + Please report the issue at . + Warning in geom_errorbar(mapping = mapping, data = data, stat = stat, position = position, : + Ignoring unknown parameters: `height` + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# fabletools + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/tidyverts/fabletools +* Source code: https://github.com/cran/fabletools +* Date/Publication: 2024-09-17 07:30:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "fabletools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + + ... + ▆ + 1. ├─testthat::expect_identical(...) at test-graphics.R:336:3 + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. ├─p_built$plot + 5. └─S7:::`$.S7_object`(p_built, plot) + + [ FAIL 6 | WARN 2 | SKIP 1 | PASS 234 ] + Error: Test failures + Execution halted + ``` + +# FactoMineR + +
+ +* Version: 2.11 +* GitHub: https://github.com/husson/FactoMineR +* Source code: https://github.com/cran/FactoMineR +* Date/Publication: 2024-04-20 08:42:41 UTC +* Number of recursive dependencies: 138 + +Run `revdepcheck::cloud_details(, "FactoMineR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘FactoMineR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: CA + > ### Title: Correspondence Analysis (CA) + > ### Aliases: CA + > ### Keywords: multivariate + > + > ### ** Examples + > + > data(children) + > res.ca <- CA (children, row.sup = 15:18, col.sup = 6:8) + Error: object properties are invalid: + - @face must be or , not + Execution halted + ``` + +# fairadapt + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/dplecko/fairadapt +* Source code: https://github.com/cran/fairadapt +* Date/Publication: 2024-09-06 12:50:08 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "fairadapt")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘jss.Rmd’ using rmarkdown + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘jss.Rmd’ using rmarkdown + This is pdfTeX, Version 3.141592653-2.6-1.40.27 (TeX Live 2025) (preloaded format=pdflatex) + restricted \write18 enabled. + entering extended mode + tlmgr search --file --global '/standalone.cls' + Trying to automatically install missing LaTeX packages... + tlmgr install standalone + tlmgr: package repository https://mirrors.rit.edu/CTAN/systems/texlive/tlnet (verified) + [1/6, ??:??/??:??] install: adjustbox [14k] + ... + entering extended mode + tlmgr search --file --global '/grfext.sty' + Trying to automatically install missing LaTeX packages... + tlmgr install grfext + tlmgr: package repository https://mirrors.ibiblio.org/pub/mirrors/CTAN/systems/texlive/tlnet (verified) + [1/1, ??:??/??:??] install: grfext [3k] + running mktexlsr ... + done running mktexlsr. + tlmgr: package log updated: /opt/TinyTeX/texmf-var/web2c/tlmgr.log + tlmgr: command log updated: /opt/TinyTeX/texmf-var/web2c/tlmgr-commands.log + ``` + +# fairmodels + +
+ +* Version: 1.2.1 +* GitHub: https://github.com/ModelOriented/fairmodels +* Source code: https://github.com/cran/fairmodels +* Date/Publication: 2022-08-23 19:50:06 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "fairmodels")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fairmodels-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fairness_heatmap + > ### Title: Fairness heatmap + > ### Aliases: fairness_heatmap + > + > ### ** Examples + > + > + ... +  Fairness object created succesfully  + > + > + > fh <- fairness_heatmap(fobject) + > + > plot(fh) + Error in rep(yes, length.out = len) : + attempt to replicate an object of type 'object' + Calls: plot -> plot.fairness_heatmap -> ifelse + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(fairmodels) + > + > + > test_check("fairmodels") + Welcome to DALEX (version: 2.4.3). + Find examples and detailed introduction at: http://ema.drwhy.ai/ + ... + 5. │ └─base::class(object) %in% class + 6. ├─fairmodels::plot_fairmodels(fc, type = "fairness_heatmap") + 7. └─fairmodels:::plot_fairmodels.fairness_object(fc, type = "fairness_heatmap") + 8. └─fairmodels:::plot_fairmodels.default(x, type, ...) + 9. └─fairmodels:::plot.fairness_heatmap(fairness_heatmap(x, ...)) + 10. └─base::ifelse(...) + + [ FAIL 4 | WARN 1 | SKIP 0 | PASS 295 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Advanced_tutorial.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) choose_metric.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) choose_metric.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) choose_metric.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) confusion_matrx.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) confusion_matrx.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) confusion_matrx.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) confusion_matrx.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) disparate_impact_remover.Rd:28: Lost braces + 28 | pigeonholing. The number of pigeonholes is fixed and equal to min{101, unique(a)}, where a is vector with values for subgroup. So if some subgroup is not numerous and + | ^ + ... + checkRd: (-1) group_metric.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) group_metric.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) group_metric.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) group_metric.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) metric_scores.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) metric_scores.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) performance_and_fairness.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) performance_and_fairness.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) performance_and_fairness.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) performance_and_fairness.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# fairness + +
+ +* Version: 1.2.2 +* GitHub: https://github.com/kozodoi/fairness +* Source code: https://github.com/cran/fairness +* Date/Publication: 2021-04-14 15:00:02 UTC +* Number of recursive dependencies: 149 + +Run `revdepcheck::cloud_details(, "fairness")` for more info + +
+ +## Newly broken + +* checking whether package ‘fairness’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fairness’ + See ‘/tmp/workdir/fairness/new/fairness.Rcheck/00install.out’ for details. + ``` + +# FARS + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/FARS +* Date/Publication: 2025-05-08 10:40:06 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "FARS")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘introduction.Rmd’ using rmarkdown + + Quitting from introduction.Rmd:174-202 [unnamed-chunk-11] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + ... + + Error: processing vignette 'introduction.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# fastR2 + +
+ +* Version: 1.2.4 +* GitHub: https://github.com/rpruim/fastR2 +* Source code: https://github.com/cran/fastR2 +* Date/Publication: 2023-11-09 06:30:03 UTC +* Number of recursive dependencies: 165 + +Run `revdepcheck::cloud_details(, "fastR2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fastR2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: AirlineArrival + > ### Title: Airline On-Time Arrival Data + > ### Aliases: AirlineArrival + > ### Keywords: datasets + > + > ### ** Examples + > + ... + `.groups` argument. + > gf_line(percent ~ airport, color = ~ airline, group = ~ airline, + + data = AirlineArrival2) %>% + + gf_point(percent ~ airport, color = ~ airline, size = ~total, + + data = AirlineArrival2) %>% + + gf_hline(yintercept = ~ percent, color = ~airline, + + data = AirlineArrival3, linetype = "dashed") %>% + + gf_labs(y = "percent delayed") + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.1Mb + sub-directories of 1Mb or more: + data 2.0Mb + snippet 3.7Mb + ``` + +# FastUtils + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/Qile0317/FastUtils +* Source code: https://github.com/cran/FastUtils +* Date/Publication: 2024-08-17 23:20:17 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "FastUtils")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘FastUtils-Ex.R’ failed + The error most likely occurred in: + + > ### Name: getPlotDims + > ### Title: Get the dimensions of a ggplot Object + > ### Aliases: getPlotDims + > ### Keywords: ggplot + > + > ### ** Examples + > + > library(ggplot2) + > getPlotDims(ggplot(mtcars) + geom_point(aes(mpg, cyl))) + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(plt)@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(plt)@layout`? + Backtrace: + ▆ + 1. └─FastUtils::getPlotDims(...) at test-ggplot.R:2:5 + 2. ├─ggplot2::ggplot_build(plt)$layout + 3. └─S7:::`$.S7_object`(ggplot2::ggplot_build(plt), "layout") + + [ FAIL 1 | WARN 1 | SKIP 1 | PASS 152 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘lifecycle’ + All declared Imports should be used. + ``` + +# faux + +
+ +* Version: 1.2.2 +* GitHub: https://github.com/debruine/faux +* Source code: https://github.com/cran/faux +* Date/Publication: 2025-01-15 09:10:01 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "faux")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘faux-Ex.R’ failed + The error most likely occurred in: + + > ### Name: beta2norm + > ### Title: Convert beta to normal + > ### Aliases: beta2norm + > + > ### ** Examples + > + > + > x <- rbeta(10000, 2, 3) + > y <- beta2norm(x) + shape1 was not set, so guessed as 1.96704823352025 + shape2 was not set, so guessed as 2.94110338061547 + > g <- ggplot2::ggplot() + ggplot2::geom_point(ggplot2::aes(x, y)) + > ggExtra::ggMarginal(g, type = "histogram") + Error: Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(faux) + + ************ + Welcome to faux. For support and examples visit: + https://debruine.github.io/faux/ + - Get and set global package options with: faux_options() + ... + Backtrace: + ▆ + 1. └─global expect_equal(p_value_st$facet$params$labeller(df), value_labs) at test-plot_design.R:420:3 + 2. └─testthat::expect_equal(..., check.environment = FALSE) + 3. └─testthat::quasi_label(enquo(object), label, arg = "object") + 4. └─rlang::eval_bare(expr, quo_get_env(quo)) + + [ FAIL 21 | WARN 0 | SKIP 21 | PASS 1347 ] + Error: Test failures + Execution halted + ``` + +# fChange + +
+ +* Version: 2.0.0 +* GitHub: NA +* Source code: https://github.com/cran/fChange +* Date/Publication: 2025-03-27 18:00:09 UTC +* Number of recursive dependencies: 207 + +Run `revdepcheck::cloud_details(, "fChange")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + `expected`: "gg" + ── Failure ('test-plot_qq.R:3:3'): QQ Plot ───────────────────────────────────── + class(tmp)[1] (`actual`) not equal to "gg" (`expected`). + + `actual`: "ggplot" + `expected`: "gg" + + [ FAIL 13 | WARN 0 | SKIP 9 | PASS 177 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.0Mb + sub-directories of 1Mb or more: + data 2.0Mb + libs 3.5Mb + ``` + +# fdANOVA + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/fdANOVA +* Date/Publication: 2018-08-29 19:54:26 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "fdANOVA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fdANOVA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.fanovatests + > ### Title: Plot P-values of Tests Based on Random Projections for FANOVA + > ### Problem + > ### Aliases: plot.fanovatests + > ### Keywords: Plot + > + > ### ** Examples + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# fdaPOIFD + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/aefdz/fdaPOIFD +* Source code: https://github.com/cran/fdaPOIFD +* Date/Publication: 2022-05-16 16:10:05 UTC +* Number of recursive dependencies: 75 + +Run `revdepcheck::cloud_details(, "fdaPOIFD")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fdaPOIFD-Ex.R’ failed + The error most likely occurred in: + + > ### Name: exampleData + > ### Title: exampleData + > ### Aliases: exampleData + > ### Keywords: datasets + > + > ### ** Examples + > + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘FastGP’ ‘MASS’ ‘fdapace’ + All declared Imports should be used. + ``` + +# feasts + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/tidyverts/feasts +* Source code: https://github.com/cran/feasts +* Date/Publication: 2024-09-25 23:40:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "feasts")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(feasts) + Loading required package: fabletools + > + > test_check("feasts") + [ FAIL 10 | WARN 0 | SKIP 0 | PASS 82 ] + + ... + ▆ + 1. ├─testthat::expect_equivalent(...) at test-graphics.R:273:3 + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. ├─p_built$plot + 5. └─S7:::`$.S7_object`(p_built, plot) + + [ FAIL 10 | WARN 0 | SKIP 0 | PASS 82 ] + Error: Test failures + Execution halted + ``` + +# fec16 + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/baumer-lab/fec16 +* Source code: https://github.com/cran/fec16 +* Date/Publication: 2023-08-09 10:50:14 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "fec16")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘fec_vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 20 marked UTF-8 strings + ``` + +# fect + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/fect +* Date/Publication: 2022-10-14 09:52:32 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "fect")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fect-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.fect + > ### Title: Plotting + > ### Aliases: plot.fect + > + > ### ** Examples + > + > library(fect) + ... + 3. └─ggplot2::ggplot_build(x) + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 6. └─ggplot2:::plot_theme(plot) + 7. └─ggplot2:::check_theme(theme) + 8. └─base::mapply(...) + 9. └─ggplot2 (local) ``(...) + 10. └─cli::cli_abort(...) + 11. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +* checking installed package size ... NOTE + ``` + installed size is 12.3Mb + sub-directories of 1Mb or more: + libs 10.9Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘panelView’ + All declared Imports should be used. + ``` + +# fergm + +
+ +* Version: 1.1.4 +* GitHub: https://github.com/benjamin-w-campbell/fergm +* Source code: https://github.com/cran/fergm +* Date/Publication: 2018-10-17 22:20:11 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "fergm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fergm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fergm_beta_traceplot + > ### Title: Plot traceplots for model terms. + > ### Aliases: fergm_beta_traceplot + > ### Keywords: FERGM interpret summary + > + > ### ** Examples + > + ... + > # Use rstan's built in traceplot function + > trace <- rstan::traceplot(fergm.fit$stan.fit, pars = "beta") + > trace + > + > # We have our own version that includes variable names and tidies it up a bit + > fergm_beta_traceplot(fergm.fit, + + custom_var_names = c("Edges", "Sex Homophily", + + "Grade Homophily", "Race Homophily", "GWESP", "Alternating K-Stars")) + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking contents of ‘data’ directory ... WARNING + ``` + Output for data("fergm.fit", package = "fergm"): + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘fergm.fit’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘fergm.fit’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘fergm.fit’ + Warning: namespace ‘colorspace’ is not available and has been replaced + by .GlobalEnv when processing object ‘fergm.fit’ + ``` + +# ferrn + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/huizezhang-sherry/ferrn +* Source code: https://github.com/cran/ferrn +* Date/Publication: 2024-06-23 22:30:07 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "ferrn")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ferrn-Ex.R’ failed + The error most likely occurred in: + + > ### Name: explore_trace_search + > ### Title: Plot the count in each iteration + > ### Aliases: explore_trace_search + > + > ### ** Examples + > + > # Summary plots for search points in two algorithms + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# fgeo.plot + +
+ +* Version: 1.1.11 +* GitHub: https://github.com/forestgeo/fgeo.plot +* Source code: https://github.com/cran/fgeo.plot +* Date/Publication: 2022-09-03 18:30:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "fgeo.plot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fgeo.plot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot_by_species.sp_elev + > ### Title: List plots of species distribution and topography (good for pdf + > ### output). + > ### Aliases: autoplot_by_species.sp_elev autoplot_by_species.sp + > + > ### ** Examples + > + ... + 5. │ └─fgeo.plot (local) FUN(X[[i]], ...) + 6. │ └─fgeo.plot:::map_pure_elev(...) + 7. │ └─... %>% ... + 8. ├─fgeo.plot:::best_elev_legend(., hide_color_legend = hide_color_legend) + 9. └─fgeo.plot:::add_elevation_contours(...) + 10. └─ggplot2::scale_colour_continuous(low = low, high = high) + 11. └─ggplot2:::scale_backward_compatibility(...) + 12. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 13. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(fgeo.plot) + > + > test_check("fgeo.plot") + [ FAIL 11 | WARN 5 | SKIP 0 | PASS 108 ] + + ... + 9. ├─fgeo.plot:::best_elev_legend(., hide_color_legend = hide_color_legend) + 10. └─fgeo.plot:::add_elevation_contours(...) + 11. └─ggplot2::scale_colour_continuous(low = low, high = high) + 12. └─ggplot2:::scale_backward_compatibility(...) + 13. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 14. └─rlang::abort(...) + + [ FAIL 11 | WARN 5 | SKIP 0 | PASS 108 ] + Error: Test failures + Execution halted + ``` + +# FieldSimR + +
+ +* Version: 1.4.0 +* GitHub: https://github.com/crWerner/fieldsimr +* Source code: https://github.com/cran/FieldSimR +* Date/Publication: 2024-08-30 15:00:06 UTC +* Number of recursive dependencies: 58 + +Run `revdepcheck::cloud_details(, "FieldSimR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘FieldSimR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: qq_plot + > ### Title: Q-Q plot + > ### Aliases: qq_plot + > + > ### ** Examples + > + > # Q-Q plot of the simulated plot errors in the example data frame 'error_df_bivar' + ... + > + > error_df <- error_df_bivar[error_df_bivar$env == 1, ] + > + > qq <- qq_plot( + + df = error_df, + + effect = "e.Trait1", + + labels = TRUE + + ) + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(p)@data`? + Execution halted + ``` + +# figpatch + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/BradyAJohnston/figpatch +* Source code: https://github.com/cran/figpatch +* Date/Publication: 2025-05-02 08:00:02 UTC +* Number of recursive dependencies: 75 + +Run `revdepcheck::cloud_details(, "figpatch")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘figpatch-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fig + > ### Title: Parse Image to a Fig + > ### Aliases: fig + > + > ### ** Examples + > + > + ... + > library(figpatch) + > library(ggplot2) + > + > # Attach the fig image file + > image <- system.file("extdata", "fig.png", package = "figpatch", mustWork = TRUE) + > + > # Read in the image as a 'fig' + > img <- fig(image) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(figpatch) + > + > test_check("figpatch") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] + + ... + 9. ├─figpatch::fig(...) at test-fig.R:8:5 + 10. │ ├─base::`$<-`(`*tmp*`, "fig_data", value = ``) + 11. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "fig_data", value = ``) + 12. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 13. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 14. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] + Error: Test failures + Execution halted + ``` + +# finalfit + +
+ +* Version: 1.0.8 +* GitHub: https://github.com/ewenharrison/finalfit +* Source code: https://github.com/cran/finalfit +* Date/Publication: 2024-07-24 15:20:01 UTC +* Number of recursive dependencies: 179 + +Run `revdepcheck::cloud_details(, "finalfit")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘finalfit-Ex.R’ failed + The error most likely occurred in: + + > ### Name: surv_plot + > ### Title: Plot survival curves with number-at-risk table + > ### Aliases: surv_plot + > + > ### ** Examples + > + > library(finalfit) + ... + > colon_s %>% + + surv_plot(dependent, explanatory, xlab="Time (days)", pval=TRUE, legend="none") + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggpubr package. + Please report the issue at . + Warning: Ignoring unknown labels: + • `fill = ""` + Error: Can't get S7 properties with `$`. Did you mean `g@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(finalfit) + > + > test_check("finalfit") + [ FAIL 1 | WARN 26 | SKIP 0 | PASS 130 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 8. └─survminer (local) ``(...) + 9. └─survminer:::.extract_ggplot_colors(p, grp.levels = pms$legend.labs) + 10. ├─base::unlist(unique(g$data[[1]]["colour"])) + 11. ├─base::unique(g$data[[1]]["colour"]) + 12. ├─g$data + 13. └─S7:::`$.S7_object`(g, "data") + + [ FAIL 1 | WARN 26 | SKIP 0 | PASS 130 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘all_plots_examples.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + doc 5.0Mb + ``` + +# finalsize + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/epiverse-trace/finalsize +* Source code: https://github.com/cran/finalsize +* Date/Publication: 2024-04-09 16:40:06 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "finalsize")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘compare_sir_model.Rmd’ using rmarkdown + --- finished re-building ‘compare_sir_model.Rmd’ + + --- re-building ‘demographic_turnover.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.1Mb + sub-directories of 1Mb or more: + doc 1.1Mb + libs 8.8Mb + ``` + +# finna + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/rOpenGov/finna +* Source code: https://github.com/cran/finna +* Date/Publication: 2025-01-22 16:50:07 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "finna")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Error ('test-analyze_trends_over_time.R:71:3'): analyze_trends_over_time handles edge cases ── + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(plot)@data`? + Backtrace: + ▆ + 1. ├─ggplot2::ggplot_build(plot)$data at test-analyze_trends_over_time.R:71:3 + 2. └─S7:::`$.S7_object`(ggplot2::ggplot_build(plot), data) at test-analyze_trends_over_time.R:71:3 + + [ FAIL 7 | WARN 0 | SKIP 0 | PASS 80 ] + Error: Test failures + Execution halted + ``` + +# finnsurveytext + +
+ +* Version: 2.1.1 +* GitHub: https://github.com/DARIAH-FI-Survey-Concept-Network/finnsurveytext +* Source code: https://github.com/cran/finnsurveytext +* Date/Publication: 2025-03-06 16:30:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "finnsurveytext")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘finnsurveytext-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fst_cn_compare_plot + > ### Title: Concept Network- Plot comparison Concept Network + > ### Aliases: fst_cn_compare_plot + > + > ### ** Examples + > + > pos_filter <- c("NOUN", "VERB", "ADJ", "ADV") + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─finnsurveytext::fst_cn_compare_plot(e1, n1, "lyödä", unique_lemma = u) + 2. └─ggraph::geom_edge_link(...) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Overview-PackageTutorial.Rmd’ using rmarkdown + trying URL 'https://raw.githubusercontent.com/jwijffels/udpipe.models.ud.2.5/master/inst/udpipe-ud-2.5-191206/finnish-ftb-ud-2.5-191206.udpipe' + Content type 'application/octet-stream' length 20538751 bytes (19.6 MB) + ================================================== + downloaded 19.6 MB + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 24785 marked UTF-8 strings + ``` + +# fitbitViz + +
+ +* Version: 1.0.6 +* GitHub: https://github.com/mlampros/fitbitViz +* Source code: https://github.com/cran/fitbitViz +* Date/Publication: 2024-02-08 09:30:02 UTC +* Number of recursive dependencies: 154 + +Run `revdepcheck::cloud_details(, "fitbitViz")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(fitbitViz) + > + > test_check("fitbitViz") + [ FAIL 3 | WARN 3 | SKIP 0 | PASS 4 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 4. ├─ggplot2::theme(...) + 5. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL) + 6. │ └─base::mget(args, envir = env) + 7. └─ggplot2::element_text(size = 12, face = "bold", colour = level_data$colour_y_axis) + 8. └─S7::new_object(...) + 9. └─S7::validate(object, recursive = !parent_validated) + + [ FAIL 3 | WARN 3 | SKIP 0 | PASS 4 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + doc 4.0Mb + ``` + +# fitdistrplus + +
+ +* Version: 1.2-2 +* GitHub: https://github.com/lbbe-software/fitdistrplus +* Source code: https://github.com/cran/fitdistrplus +* Date/Publication: 2025-01-07 16:00:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "fitdistrplus")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fitdistrplus-Ex.R’ failed + The error most likely occurred in: + + > ### Name: CIcdfplot + > ### Title: Empirical cumulative distribution function with pointwise + > ### confidence intervals on probabilities or on quantiles + > ### Aliases: CIcdfplot + > ### Keywords: distribution + > + > ### ** Examples + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘t-CIcdfplot.R’ + Running the tests in ‘tests/t-CIcdfplot.R’ failed. + Complete output: + > require("fitdistrplus") + Loading required package: fitdistrplus + Loading required package: MASS + Loading required package: survival + > + > nbboot <- 201 + > nbboot <- 10 + ... + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Warning message: + Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the fitdistrplus package. + Please report the issue at + . + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘FAQ.Rmd’ using rmarkdown + ``` + +# flametree + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/djnavarro/flametree +* Source code: https://github.com/cran/flametree +* Date/Publication: 2021-11-29 08:00:02 UTC +* Number of recursive dependencies: 75 + +Run `revdepcheck::cloud_details(, "flametree")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(flametree) + > + > test_check("flametree") + Saving 7 x 7 in image + [ FAIL 6 | WARN 5 | SKIP 1 | PASS 236 ] + + ... + ── Failure ('test-plot.R:9:3'): plot returns a ggplot object ─────────────────── + flametree_plot(dat, style = "voronoi") inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-plot.R:10:3'): plot returns a ggplot object ────────────────── + flametree_plot(dat, style = "wisp") inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-plot.R:11:3'): plot returns a ggplot object ────────────────── + flametree_plot(dat, style = "nativeflora") inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 6 | WARN 5 | SKIP 1 | PASS 236 ] + Error: Test failures + Execution halted + ``` + +# flashlight + +
+ +* Version: 0.9.0 +* GitHub: https://github.com/mayer79/flashlight +* Source code: https://github.com/cran/flashlight +* Date/Publication: 2023-05-10 02:40:06 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "flashlight")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘flashlight-Ex.R’ failed + The error most likely occurred in: + + > ### Name: light_interaction + > ### Title: Interaction Strength + > ### Aliases: light_interaction light_interaction.default + > ### light_interaction.flashlight light_interaction.multiflashlight + > + > ### ** Examples + > + ... + > fit_add <- stats::lm(Sepal.Length ~ Petal.Length + Petal.Width, data = iris) + > fit_nonadd <- stats::lm(Sepal.Length ~ Petal.Length * Petal.Width, data = iris) + > fl_add <- flashlight(model = fit_add, label = "additive") + > fl_nonadd <- flashlight(model = fit_nonadd, label = "nonadditive") + > fls <- multiflashlight(list(fl_add, fl_nonadd), data = iris) + > plot(st <- light_interaction(fls, v = v), fill = "darkgreen") + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘flashlight.Rmd’ using rmarkdown + + Quitting from flashlight.Rmd:85-95 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `as.vector()`: + ! cannot coerce type 'object' to vector of type 'character' + --- + Backtrace: + ... + + Error: processing vignette 'flashlight.Rmd' failed with diagnostics: + cannot coerce type 'object' to vector of type 'character' + --- failed re-building ‘flashlight.Rmd’ + + SUMMARY: processing the following file failed: + ‘flashlight.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) flashlight.Rd:53: Lost braces; missing escapes or markup? + 53 | like those in package {MetricsWeighted}.} + | ^ + checkRd: (-1) grouped_stats.Rd:49: Lost braces; missing escapes or markup? + 49 | {MetricsWeighted}.} + | ^ + checkRd: (-1) plot_counts.Rd:45: Lost braces; missing escapes or markup? + 45 | Experimental. Uses package {ggpubr} to rearrange the figure. + | ^ + ``` + +# flextable + +
+ +* Version: 0.9.7 +* GitHub: https://github.com/davidgohel/flextable +* Source code: https://github.com/cran/flextable +* Date/Publication: 2024-10-27 20:10:02 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "flextable")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘flextable-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gg_chunk + > ### Title: 'ggplots' chunk wrapper + > ### Aliases: gg_chunk + > + > ### ** Examples + > + > library(data.table) + ... + Loading required package: ggplot2 + a flextable object. + col_keys: `Species`, `gg` + header has 1 row(s) + body has 3 row(s) + original dataset sample: + Error in format.default(unlist(xx), ...) : + c("Found no format() method for class \"ggplot\"", "Found no format() method for class \"ggplot2::ggplot\"", "Found no format() method for class \"ggplot2::gg\"", "Found no format() method for class \"S7_object\"") + Calls: ... format -> format.default -> lapply -> FUN -> format.default + Execution halted + ``` + +# flipr + +
+ +* Version: 0.3.3 +* GitHub: https://github.com/LMJL-Alea/flipr +* Source code: https://github.com/cran/flipr +* Date/Publication: 2023-08-23 09:00:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "flipr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘alternative.Rmd’ using rmarkdown + --- finished re-building ‘alternative.Rmd’ + + --- re-building ‘exactness.Rmd’ using rmarkdown + + Quitting from exactness.Rmd:141-177 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ... + 6. ├─plotly::ggplotly(.) + 7. └─plotly:::ggplotly.ggplot(.) + 8. └─plotly::gg2list(...) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'exactness.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘exactness.Rmd’ + + --- re-building ‘flipr.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.2Mb + sub-directories of 1Mb or more: + doc 9.1Mb + libs 1.4Mb + ``` + +# FLORAL + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/vdblab/FLORAL +* Source code: https://github.com/cran/FLORAL +* Date/Publication: 2025-02-17 07:20:02 UTC +* Number of recursive dependencies: 198 + +Run `revdepcheck::cloud_details(, "FLORAL")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ using rmarkdown + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + ... + --- finished re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’ + + --- re-building ‘Using-FLORAL-with-phyloseq.Rmd’ using rmarkdown + --- finished re-building ‘Using-FLORAL-with-phyloseq.Rmd’ + + SUMMARY: processing the following file failed: + ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.3Mb + sub-directories of 1Mb or more: + doc 1.2Mb + libs 7.3Mb + ``` + +# fluxible + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/Plant-Functional-Trait-Course/fluxible +* Source code: https://github.com/cran/fluxible +* Date/Publication: 2025-05-13 08:30:02 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "fluxible")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Error ('test-flux_plot.R:13:3'): plot for exponential fit ─────────────────── + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(plot)@layout`? + Backtrace: + ▆ + 1. └─testthat::expect_snapshot(...) at test-flux_plot.R:13:3 + 2. └─rlang::cnd_signal(state$error) + + [ FAIL 1 | WARN 0 | SKIP 70 | PASS 30 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.0Mb + sub-directories of 1Mb or more: + data 2.0Mb + doc 1.8Mb + help 1.0Mb + ``` + +# fmeffects + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/holgstr/fmeffects +* Source code: https://github.com/cran/fmeffects +* Date/Publication: 2024-11-05 18:50:02 UTC +* Number of recursive dependencies: 181 + +Run `revdepcheck::cloud_details(, "fmeffects")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘fmeffects-Ex.R’ failed + The error most likely occurred in: + + > ### Name: came + > ### Title: Computes a partitioning for a 'ForwardMarginalEffect' + > ### Aliases: came + > + > ### ** Examples + > + > # Train a model and compute FMEs: + ... + + PartitioningRpart of an FME object + + Method: max.sd = 200 + + n cAME SD(fME) + 728 56.44523 165.7487 * + 340 -37.57207 108.1235 + 388 138.83153 163.6989 + --- + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘fme_theory.Rmd’ using rmarkdown + --- finished re-building ‘fme_theory.Rmd’ + + --- re-building ‘fmeffects.Rmd’ using rmarkdown + ``` + +# fmf + +
+ +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/fmf +* Date/Publication: 2020-09-03 07:32:12 UTC +* Number of recursive dependencies: 176 + +Run `revdepcheck::cloud_details(, "fmf")` for more info + +
+ +## Newly broken + +* checking whether package ‘fmf’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fmf’ + See ‘/tmp/workdir/fmf/new/fmf.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +# foodingraph + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/vgasque/foodingraph +* Source code: https://github.com/cran/foodingraph +* Date/Publication: 2019-10-06 11:30:08 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "foodingraph")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘foodingraph-Ex.R’ failed + The error most likely occurred in: + + > ### Name: graph_from_links_nodes + > ### Title: Display a graph from a list of links and nodes + > ### Aliases: graph_from_links_nodes + > + > ### ** Examples + > + > adj_matrix <- cor(iris[,-5]) + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─foodingraph::graph_from_links_nodes(graph_iris, main_title = "Iris graph") + 2. └─ggraph::geom_edge_link(aes(width = .data$width, color = .data$sign, alpha = .data$alpha)) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘grid’ + All declared Imports should be used. + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# foqat + +
+ +* Version: 2.0.8.2 +* GitHub: https://github.com/tianshu129/foqat +* Source code: https://github.com/cran/foqat +* Date/Publication: 2023-09-30 06:10:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "foqat")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Air_Quality.Rmd’ using rmarkdown + --- finished re-building ‘Air_Quality.Rmd’ + + --- re-building ‘Atmospheric_Radiation.Rmd’ using rmarkdown + --- finished re-building ‘Atmospheric_Radiation.Rmd’ + + --- re-building ‘Basic_Functions.Rmd’ using rmarkdown + --- finished re-building ‘Basic_Functions.Rmd’ + + --- re-building ‘Particle_Size_Distribution.Rmd’ using rmarkdown + ``` + +# foreSIGHT + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/ClimateAnalytics/foreSIGHT +* Source code: https://github.com/cran/foreSIGHT +* Date/Publication: 2023-10-19 07:00:08 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "foreSIGHT")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘foreSIGHT-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotOptions + > ### Title: Plots the differences in performance metrics from two system + > ### options + > ### Aliases: plotOptions + > + > ### ** Examples + > + ... + . + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the foreSIGHT package. + Please report the issue at + . + Error in check_subsettable(x, allow_env = TRUE) : + S7 objects are not subsettable. + Calls: plotOptions ... data.frame -> [[ -> [[.S7_object -> check_subsettable + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Vignette_QuickStart_simpleScal.Rmd’ using rmarkdown_notangle + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.4Mb + sub-directories of 1Mb or more: + data 2.0Mb + doc 1.3Mb + libs 2.3Mb + ``` + +# forestecology + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/rudeboybert/forestecology +* Source code: https://github.com/cran/forestecology +* Date/Publication: 2021-10-02 13:30:05 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "forestecology")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘forestecology.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘blockCV’ ‘patchwork’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) species_bw.Rd:23: Lost braces + 23 | between trees." \doi{10.1371/journal.pone.0229930}{PLOS One 15: e0229930}. + | ^ + ``` + +# forestly + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/Merck/forestly +* Source code: https://github.com/cran/forestly +* Date/Publication: 2025-01-10 16:20:14 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "forestly")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘forest-plot-static.Rmd’ using rmarkdown + ``` + +# forestPSD + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/forestPSD +* Date/Publication: 2024-11-11 16:50:05 UTC +* Number of recursive dependencies: 45 + +Run `revdepcheck::cloud_details(, "forestPSD")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘forestPSD-Ex.R’ failed + The error most likely occurred in: + + > ### Name: psdfun + > ### Title: Regression analysis for survival curves. + > ### Aliases: psdfun + > + > ### ** Examples + > + > data(Npop) + ... + 14. │ └─l$compute_geom_2(d, theme = plot@theme) + 15. │ └─ggplot2 (local) compute_geom_2(..., self = self) + 16. │ └─self$geom$use_defaults(...) + 17. │ └─ggplot2 (local) use_defaults(..., self = self) + 18. │ └─ggplot2:::check_aesthetics(new_params, nrow(data)) + 19. │ └─vctrs::list_sizes(x) + 20. └─vctrs:::stop_scalar_type(``(``), "x$label", ``) + 21. └─vctrs:::stop_vctrs(...) + 22. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘ggplot2’ ‘reshape2’ + All declared Imports should be used. + ``` + +# formods + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/john-harrold/formods +* Source code: https://github.com/cran/formods +* Date/Publication: 2025-01-07 16:20:06 UTC +* Number of recursive dependencies: 187 + +Run `revdepcheck::cloud_details(, "formods")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 5. │ └─base::eval(parse(text = FUNC_CALL)) + 6. └─formods::FG_preload(...) + 7. └─formods::FG_build(...) + 8. └─ggforce::n_pages(get(fg_object_name)) + 9. ├─ggplot_build(plot)$layout + 10. └─S7:::`$.S7_object`(ggplot_build(plot), "layout") + + [ FAIL 3 | WARN 12 | SKIP 0 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +# forwards + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/forwards/forwards +* Source code: https://github.com/cran/forwards +* Date/Publication: 2019-07-30 21:10:02 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "forwards")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Overview.Rmd’ using rmarkdown + ``` + +# FossilSim + +
+ +* Version: 2.4.1 +* GitHub: NA +* Source code: https://github.com/cran/FossilSim +* Date/Publication: 2024-10-02 20:30:02 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "FossilSim")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘FossilSim-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.fbdrange + > ### Title: Plot oriented tree with stratigraphic ranges + > ### Aliases: plot.fbdrange + > + > ### ** Examples + > + > tree_file <- system.file("extdata", "fbdrange.trees", package = "FossilSim") + > fbdr <- get_fbdrange_from_file(tree_file) + > p <- plot(fbdr, smart.labels = TRUE) + Warning: `aes_()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()` + ℹ The deprecated feature was likely used in the ggtree package. + Please report the issue at . + Error: Can't find property @i + Execution halted + ``` + +# FPDclustering + +
+ +* Version: 2.3.5 +* GitHub: NA +* Source code: https://github.com/cran/FPDclustering +* Date/Publication: 2025-03-06 03:40:04 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "FPDclustering")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘FPDclustering-Ex.R’ failed + The error most likely occurred in: + + > ### Name: GPDC + > ### Title: Gaussian PD-Clustering + > ### Aliases: GPDC + > + > ### ** Examples + > + > #Load the data + ... + > + > #Results + > table(res$label,ais$sex) + + f m + 1 95 1 + 2 5 101 + > plot(res) + Error: C stack usage 9962964 is too close to the limit + Execution halted + ``` + +# fqar + +
+ +* Version: 0.5.4 +* GitHub: https://github.com/equitable-equations/fqar +* Source code: https://github.com/cran/fqar +* Date/Publication: 2024-10-06 18:00:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "fqar")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-species_profile_plot.R:21:3'): species_profile_plot works ──── + class(p) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 365 ] + Error: Test failures + Execution halted + ``` + +# frailtyEM + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/tbalan/frailtyEM +* Source code: https://github.com/cran/frailtyEM +* Date/Publication: 2019-09-22 13:00:10 UTC +* Number of recursive dependencies: 76 + +Run `revdepcheck::cloud_details(, "frailtyEM")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘frailtyEM-Ex.R’ failed + The error most likely occurred in: + + > ### Name: summary.emfrail + > ### Title: Summary for 'emfrail' objects + > ### Aliases: summary.emfrail + > + > ### ** Examples + > + > data("bladder") + ... + filter + + The following object is masked from ‘package:graphics’: + + layout + + > ggplotly(pl2) + Error in pm[[2]] : subscript out of bounds + Calls: ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘frailtyEM_manual.Rnw’ using Sweave + Loading required package: survival + Loading required package: gridExtra + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more + information. + ℹ The deprecated feature was likely used in the frailtyEM + package. + ... + l.179 \RequirePackage{grfext}\relax + ^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘frailtyEM_manual.Rnw’ + + SUMMARY: processing the following file failed: + ‘frailtyEM_manual.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) emfrail_control.Rd:49: Lost braces in \itemize; meant \describe ? + checkRd: (-1) emfrail_control.Rd:50: Lost braces in \itemize; meant \describe ? + checkRd: (-1) emfrail_control.Rd:51: Lost braces in \itemize; meant \describe ? + checkRd: (-1) emfrail_control.Rd:52: Lost braces in \itemize; meant \describe ? + checkRd: (-1) emfrail_control.Rd:53-54: Lost braces in \itemize; meant \describe ? + checkRd: (-1) emfrail_control.Rd:55-57: Lost braces in \itemize; meant \describe ? + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# freqparcoord + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/freqparcoord +* Date/Publication: 2016-01-17 10:59:33 +* Number of recursive dependencies: 46 + +Run `revdepcheck::cloud_details(, "freqparcoord")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘freqparcoord-Ex.R’ failed + The error most likely occurred in: + + > ### Name: freqparcoord + > ### Title: Frequency-based parallel coordinates. + > ### Aliases: freqparcoord + > + > ### ** Examples + > + > # baseball player data courtesy of UCLA Stat. Dept., www.socr.ucla.edu + > data(mlb) + > + > # plot baseball data, broken down by position category (infield, + > # outfield, etc.); plot the 5 higest-density values in each group + > freqparcoord(mlb,5,4:6,7,method="maxdens") + Error: Can't find property @i + Execution halted + ``` + +# func2vis + +
+ +* Version: 1.0-3 +* GitHub: NA +* Source code: https://github.com/cran/func2vis +* Date/Publication: 2023-03-16 17:30:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "func2vis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘func2vis-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_pathways + > ### Title: Plot clean enriched pathways as a bubble plot + > ### Aliases: plot_pathways + > + > ### ** Examples + > + > data("t.tests.treatment.sign") + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─func2vis::plot_pathways(revised_pathway) + 2. └─ggplot2::scale_color_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +# funcharts + +
+ +* Version: 1.7.0 +* GitHub: https://github.com/unina-sfere/funcharts +* Source code: https://github.com/cran/funcharts +* Date/Publication: 2025-03-17 17:30:02 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "funcharts")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘funcharts-Ex.R’ failed + The error most likely occurred in: + + > ### Name: cbind_mfd + > ### Title: Bind variables of two Multivariate Functional Data Objects + > ### Aliases: cbind_mfd + > + > ### ** Examples + > + > library(funcharts) + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─funcharts::plot_mfd(mfdobj1) + 2. └─ggplot2::geom_line(...) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(funcharts) + Loading required package: robustbase + > + > test_check("funcharts") + [1] "The Fisher omnibus combining function is considered." + [1] "The Fisher omnibus combining function is considered." + ... + 2. └─funcharts::plot_mfd(...) + 3. └─ggplot2::geom_line(...) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + + [ FAIL 7 | WARN 0 | SKIP 1 | PASS 94 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + R 1.5Mb + libs 3.4Mb + ``` + +# funkyheatmap + +
+ +* Version: 0.5.2 +* GitHub: https://github.com/funkyheatmap/funkyheatmap +* Source code: https://github.com/cran/funkyheatmap +* Date/Publication: 2025-04-09 11:30:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "funkyheatmap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘funkyheatmap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: funky_heatmap + > ### Title: Generate a funky heatmaps for benchmarks + > ### Aliases: funky_heatmap + > + > ### ** Examples + > + > library(tibble, warn.conflicts = FALSE) + ... + ℹ No palettes were provided, trying to automatically assign palettes. + ℹ Palette named 'numerical_palette' was not defined. Assuming palette is numerical. Automatically selected palette 'Blues'. + ℹ No legends were provided, trying to automatically infer legends. + ℹ Some palettes were not used in the column info, adding legends for them. + ℹ Legend 1 did not contain a geom, inferring from the column info. + ℹ Legend 1 did not contain labels, inferring from the geom. + ℹ Legend 1 did not contain size, inferring from the labels. + ℹ Legend 1 did not contain color, inferring from the palette. + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 2. │ └─funkyheatmap:::compose_ggplot(geom_positions, position_args) + 3. │ ├─base::`$<-`(`*tmp*`, "minimum_x", value = ``) + 4. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "minimum_x", value = ``) + 5. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 6. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 7. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 5 | WARN 0 | SKIP 0 | PASS 33 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘funkyheatmap.Rmd’ using rmarkdown + --- finished re-building ‘funkyheatmap.Rmd’ + + --- re-building ‘scIB.Rmd’ using rmarkdown + + Quitting from scIB.Rmd:240-253 [summary-figure] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ... + + Error: processing vignette 'scIB.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘scIB.Rmd’ + + SUMMARY: processing the following file failed: + ‘scIB.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 36 marked UTF-8 strings + ``` + +# FunnelPlotR + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/nhs-r-community/FunnelPlotR +* Source code: https://github.com/cran/FunnelPlotR +* Date/Publication: 2024-04-12 08:40:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "FunnelPlotR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘FunnelPlotR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: funnel_plot + > ### Title: Funnel plots for comparing institutional performance + > ### Aliases: funnel_plot + > + > ### ** Examples + > + > # We will use the 'medpar' dataset from the 'COUNT' package. + ... + > + > # Get predicted values for building ratio + > medpar$prds<- predict(mod, type="response") + > + > # Draw plot, returning just the plot object + > fp<-funnel_plot(medpar, denominator=prds, numerator=los, + + group = provnum, limit=95, title="An example funnel plot") + Error in validate_funnel_plot(rtn) : Invalid ggplot object + Calls: funnel_plot -> validate_funnel_plot + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(FunnelPlotR) + > + > test_check("FunnelPlotR") + [ FAIL 5 | WARN 0 | SKIP 0 | PASS 31 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test-funnel_themes.R:2:3'): `themes are not broken ──────────────── + funnel_clean() inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + ── Failure ('test-funnel_themes.R:3:3'): `themes are not broken ──────────────── + funnel_grey() inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + ── Failure ('test-poisson_limits.R:11:3'): `Poisson limits are right ─────────── + funnel_grey() inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 5 | WARN 0 | SKIP 0 | PASS 31 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘changing_funnel_plot_options.Rmd’ using rmarkdown + + Quitting from changing_funnel_plot_options.Rmd:32-49 [dtsetup] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `validate_funnel_plot()`: + ! Invalid ggplot object + --- + Backtrace: + ... + ▆ + 1. └─FunnelPlotR::funnel_plot(...) + 2. └─FunnelPlotR:::validate_funnel_plot(rtn) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'changing_funnel_plot_options.Rmd' failed with diagnostics: + Invalid ggplot object + --- failed re-building ‘changing_funnel_plot_options.Rmd’ + + --- re-building ‘funnel_plots.Rmd’ using rmarkdown + ``` + +# funtimes + +
+ +* Version: 9.1 +* GitHub: NA +* Source code: https://github.com/cran/funtimes +* Date/Publication: 2023-03-21 23:40:02 UTC +* Number of recursive dependencies: 189 + +Run `revdepcheck::cloud_details(, "funtimes")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘beales.Rmd’ using rmarkdown + --- finished re-building ‘beales.Rmd’ + + --- re-building ‘trendtests.Rmd’ using rmarkdown + + Quitting from trendtests.Rmd:52-64 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'trendtests.Rmd' failed with diagnostics: + Can't add `p2` to a object. + --- failed re-building ‘trendtests.Rmd’ + + --- re-building ‘tsclusters.Rmd’ using rmarkdown + ``` + +# gapfill + +
+ +* Version: 0.9.6-1 +* GitHub: https://github.com/florafauna/gapfill +* Source code: https://github.com/cran/gapfill +* Date/Publication: 2021-02-12 10:10:05 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "gapfill")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘run-all.R’ + Running the tests in ‘tests/run-all.R’ failed. + Complete output: + > library(testthat) + > test_check('gapfill') + Loading required package: gapfill + Loading required package: ggplot2 + --> See ?Gapfill and https://doi.org/10.1109/TGRS.2017.2785240 <-- + [ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ] + + ... + ── Failure ('test-Image.R:10:4'): Image ──────────────────────────────────────── + class(Image(unname(ndvi))) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test-Image.R:11:4'): Image ──────────────────────────────────────── + class(Image(ndvi, zlim = c(1, 2))) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'raster', 'doParallel', 'doMPI' + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) Gapfill.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Gapfill.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Gapfill.Rd:71-77: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Gapfill.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Gapfill.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Gapfill.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Gapfill.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Gapfill.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) ndvi.Rd:10: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ndvi.Rd:11: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ndvi.Rd:12: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ndvi.Rd:13: Lost braces in \itemize; meant \describe ? + ``` + +# gapminder + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/jennybc/gapminder +* Source code: https://github.com/cran/gapminder +* Date/Publication: 2023-03-10 09:50:08 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "gapminder")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gapminder-Ex.R’ failed + The error most likely occurred in: + + > ### Name: country_colors + > ### Title: Gapminder color schemes. + > ### Aliases: country_colors continent_colors + > ### Keywords: datasets + > + > ### ** Examples + > + ... + and is now defunct. + ℹ Please use the `show.legend` argument instead. + Backtrace: + ▆ + 1. └─ggplot2::geom_line(lwd = 1, show_guide = FALSE) + 2. └─ggplot2::layer(...) + 3. └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)") + 4. └─lifecycle:::deprecate_stop0(msg) + 5. └─rlang::cnd_signal(...) + Execution halted + ``` + +# GCalignR + +
+ +* Version: 1.0.7 +* GitHub: https://github.com/mottensmann/GCalignR +* Source code: https://github.com/cran/GCalignR +* Date/Publication: 2024-07-03 18:00:01 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "GCalignR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘GCalignR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gc_heatmap + > ### Title: Visualises peak alignments in form of a heatmap + > ### Aliases: gc_heatmap + > + > ### ** Examples + > + > + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─GCalignR::gc_heatmap(aligned_peak_data, algorithm_step = "aligned") + 2. └─ggplot2::scale_fill_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(GCalignR) + > + > test_check("GCalignR") + Run GCalignR + Start: 2025-05-19 08:25:48 + + ... + ▆ + 1. └─GCalignR::gc_heatmap(x) at test-gc_heatmap.R:6:1 + 2. └─ggplot2::scale_fill_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + + [ FAIL 1 | WARN 2 | SKIP 1 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘GCalignR_How_does_the_Algorithm_work.Rmd’ using rmarkdown + ``` + +# GDAtools + +
+ +* Version: 2.1 +* GitHub: https://github.com/nicolas-robette/GDAtools +* Source code: https://github.com/cran/GDAtools +* Date/Publication: 2024-03-07 09:50:06 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "GDAtools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘GDAtools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: DA + > ### Title: Discriminant Analysis + > ### Aliases: DA + > ### Keywords: multivariate + > + > ### ** Examples + > + > library(FactoMineR) + > data(decathlon) + > points <- cut(decathlon$Points, c(7300, 7800, 8000, 8120, 8900), c("Q1","Q2","Q3","Q4")) + > res <- DA(decathlon[,1:10], points) + > # plot of observations colored by class + > plot(res, choix = "ind", invisible = "quali", habillage = res$call$quali.sup$numero) + Error: object properties are invalid: + - @face must be or , not + Execution halted + ``` + +# genBaRcode + +
+ +* Version: 1.2.8 +* GitHub: NA +* Source code: https://github.com/cran/genBaRcode +* Date/Publication: 2025-03-10 15:00:02 UTC +* Number of recursive dependencies: 162 + +Run `revdepcheck::cloud_details(, "genBaRcode")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘genBaRcode_GUI_Vignette.Rmd’ using rmarkdown + --- finished re-building ‘genBaRcode_GUI_Vignette.Rmd’ + + --- re-building ‘genBaRcode_Vignette.Rmd’ using rmarkdown + + Quitting from genBaRcode_Vignette.Rmd:738-742 [unnamed-chunk-50] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ... + + Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘genBaRcode_Vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘genBaRcode_Vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# genekitr + +
+ +* Version: 1.2.8 +* GitHub: https://github.com/GangLiLab/genekitr +* Source code: https://github.com/cran/genekitr +* Date/Publication: 2024-09-06 13:00:06 UTC +* Number of recursive dependencies: 197 + +Run `revdepcheck::cloud_details(, "genekitr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘genekitr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotVenn + > ### Title: Venn plot for groups of genes + > ### Aliases: plotVenn + > + > ### ** Examples + > + > k1 = requireNamespace("ComplexUpset",quietly = TRUE) + ... + + legend_position = 'left' + + ) + + } + Color length should be same with venn_list, auto assign colors... + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggvenn package. + Please report the issue to the authors. + Error: Can't find property @i + Execution halted + ``` + +# GeneSelectR + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/dzhakparov/GeneSelectR +* Source code: https://github.com/cran/GeneSelectR +* Date/Publication: 2024-02-03 14:00:05 UTC +* Number of recursive dependencies: 180 + +Run `revdepcheck::cloud_details(, "GeneSelectR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ── Failure ('test_plot_feature_importance.R:8:3'): plot_feature_importance returns a list of ggplot objects ── + plots[[1]] inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test_plot_metrics.R:7:3'): plot_metrics returns a ggplot object ─── + `plot` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test_plot_metrics.R:15:3'): Handles absence of test_metrics correctly ── + `plot` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 5 | WARN 10 | SKIP 4 | PASS 16 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘simplifyEnrichment’ + ``` + +# geneSLOPE + +
+ +* Version: 0.38.2 +* GitHub: https://github.com/psobczyk/geneSLOPE +* Source code: https://github.com/cran/geneSLOPE +* Date/Publication: 2023-08-16 09:12:37 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "geneSLOPE")` for more info + +
+ +## Newly broken + +* checking whether package ‘geneSLOPE’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/geneSLOPE/new/geneSLOPE.Rcheck/00install.out’ for details. + ``` + +# geofacet + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/hafen/geofacet +* Source code: https://github.com/cran/geofacet +* Date/Publication: 2023-11-30 08:00:11 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "geofacet")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(geofacet) + > + > test_check("geofacet") + [ FAIL 15 | WARN 0 | SKIP 1 | PASS 146 ] + + ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ + ... + object. + ── Failure ('test-examples.R:158:5'): examples work ──────────────────────────── + Expected `{ ... }` to run without any errors. + ℹ Actually got a with text: + Can't add `facet_geo(~code, grid = "sa_prov_grid1", label = "name_af")` + to a object. + + [ FAIL 15 | WARN 0 | SKIP 1 | PASS 146 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘geofacet.Rmd’ using rmarkdown + + Quitting from geofacet.Rmd:58-64 [state_rank] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'geofacet.Rmd' failed with diagnostics: + Can't add `facet_geo(~state)` to a object. + --- failed re-building ‘geofacet.Rmd’ + + SUMMARY: processing the following file failed: + ‘geofacet.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 646 marked UTF-8 strings + ``` + +# geofi + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/rOpenGov/geofi +* Source code: https://github.com/cran/geofi +* Date/Publication: 2025-04-29 06:40:06 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "geofi")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘geofi_datasets.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + data 1.5Mb + doc 3.6Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 109657 marked UTF-8 strings + ``` + +# geoheatmap + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/geoheatmap +* Date/Publication: 2024-09-05 15:40:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "geoheatmap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘geoheatmap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geoheatmap + > ### Title: Create a new ggplot-based geographical heatmap for a + > ### user-specified geographical grid + > ### Aliases: geoheatmap + > + > ### ** Examples + > + ... + > data(internet) + > library(geofacet) + > library(ggplot2) + > + > internet_2015 <- subset(internet, year == 2015) + > geoheatmap(facet_data= internet_2015, grid_data= europe_countries_grid1, + + facet_col = "country", value_col = "users") + Data contains facets that are not in the grid. Consider checking dataset. + Error: Can't get S7 properties with `$`. Did you mean `gb@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 4. │ └─rlang::list2(...) + 5. ├─geoheatmap:::.sb_invert(...) + 6. │ └─base::gsub("#", "", hex_color) + 7. │ └─base::is.factor(x) + 8. ├─gb$data + 9. └─S7:::`$.S7_object`(gb, data) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘geoheatmap.Rmd’ using rmarkdown + + Quitting from geoheatmap.Rmd:75-81 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'geoheatmap.Rmd' failed with diagnostics: + Unknown scale type: + --- failed re-building ‘geoheatmap.Rmd’ + + SUMMARY: processing the following file failed: + ‘geoheatmap.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# geomtextpath + +
+ +* Version: 0.1.5 +* GitHub: https://github.com/AllanCameron/geomtextpath +* Source code: https://github.com/cran/geomtextpath +* Date/Publication: 2025-01-14 17:40:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "geomtextpath")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘geomtextpath-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_textabline + > ### Title: Labelled reference lines: horizontal, vertical, and diagonal + > ### Aliases: geom_textabline geom_labelabline geom_texthline + > ### geom_labelhline geom_textvline GeomTextvline geom_labelvline + > ### GeomLabelvline + > ### Keywords: datasets + > + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─geomtextpath::geom_textabline(...) + 2. └─geomtextpath:::construct_abline(...) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(geomtextpath) + Loading required package: ggplot2 + > + > test_check("geomtextpath") + [ FAIL 5 | WARN 0 | SKIP 4 | PASS 441 ] + + ... + ── Error ('test-sf.R:81:3'): We can make grobs from sf features ──────────────── + Error: Can't get S7 properties with `$`. Did you mean `p_built@data`? + Backtrace: + ▆ + 1. ├─p_built$data at test-sf.R:81:3 + 2. └─S7:::`$.S7_object`(p_built, data) at test-sf.R:81:3 + + [ FAIL 5 | WARN 0 | SKIP 4 | PASS 441 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘aesthetics.Rmd’ using rmarkdown + ``` + +# geoprofiler + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/tobiste/geoprofiler +* Source code: https://github.com/cran/geoprofiler +* Date/Publication: 2025-04-10 14:30:12 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "geoprofiler")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘A_Distances.Rmd’ using rmarkdown + ``` + +# GET + +
+ +* Version: 1.0-5 +* GitHub: https://github.com/myllym/GET +* Source code: https://github.com/cran/GET +* Date/Publication: 2025-03-30 14:40:02 UTC +* Number of recursive dependencies: 120 + +Run `revdepcheck::cloud_details(, "GET")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘GET-Ex.R’ failed + The error most likely occurred in: + + > ### Name: GDPtax + > ### Title: GDP per capita with country groups and profit tax + > ### Aliases: GDPtax + > ### Keywords: datasets + > + > ### ** Examples + > + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘FDRenvelopes.tex.rsp’ using rsp + Error: processing vignette 'FDRenvelopes.tex.rsp' failed with diagnostics: + Running 'texi2dvi' on 'FDRenvelopes.tex' failed. + LaTeX errors: + ! LaTeX Error: File `thumbpdf.sty' not found. + + Type X to quit or to proceed, + or enter new name. (Default extension: sty) + + ... + + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘pointpatterns.tex.rsp’ + + SUMMARY: processing the following files failed: + ‘FDRenvelopes.tex.rsp’ ‘GET.tex.rsp’ ‘HotSpots.tex.rsp’ + ‘QuantileRegression.tex.rsp’ ‘pointpatterns.tex.rsp’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# gfoRmulaICE + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/gfoRmulaICE +* Date/Publication: 2024-12-02 12:50:08 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "gfoRmulaICE")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + `expected`: "gg" "ggplot" + ── Failure ('test_plot.R:534:5'): plot complicated scenario 3 - intervention-specific time options ── + class(plots) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 15 | WARN 176 | SKIP 0 | PASS 47 ] + Error: Test failures + Execution halted + ``` + +# gg.gap + +
+ +* Version: 1.3 +* GitHub: https://github.com/ChrisLou-bioinfo/gg.gap +* Source code: https://github.com/cran/gg.gap +* Date/Publication: 2019-09-30 16:10:02 UTC +* Number of recursive dependencies: 27 + +Run `revdepcheck::cloud_details(, "gg.gap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gg.gap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add.legend + > ### Title: Add Legend to gg.gap() + > ### Aliases: add.legend + > + > ### ** Examples + > + > library(ggplot2) + ... + 12. └─ggplot2::ggplot_build(x) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 15. └─ggplot2:::plot_theme(plot) + 16. └─ggplot2:::check_theme(theme) + 17. └─base::mapply(...) + 18. └─ggplot2 (local) ``(...) + 19. └─cli::cli_abort(...) + 20. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# gg1d + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/selkamand/gg1d +* Source code: https://github.com/cran/gg1d +* Date/Publication: 2024-12-09 19:40:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "gg1d")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gg1d-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gg1d + > ### Title: AutoPlot an entire data.frame + > ### Aliases: gg1d + > + > ### ** Examples + > + > path_gg1d <- system.file("example.csv", package = "gg1d") + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + i Actually got a with text: + Can't add `x[[i]]` to a object. + ── Failure ('test-gg1d.R:175:3'): gg1d heirarchical sort works ───────────────── + Expected `gg1d(...)` to run without any errors. + i Actually got a with text: + Can't add `x[[i]]` to a object. + + [ FAIL 11 | WARN 38 | SKIP 2 | PASS 45 ] + Error: Test failures + Execution halted + ``` + +# ggalign + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/Yunuuuu/ggalign +* Source code: https://github.com/cran/ggalign +* Date/Publication: 2025-05-14 14:00:08 UTC +* Number of recursive dependencies: 57 + +Run `revdepcheck::cloud_details(, "ggalign")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggalign-Ex.R’ failed + The error most likely occurred in: + + > ### Name: align + > ### Title: Create a New 'CraftBox' Object with 'CraftAlign' craftsman + > ### Aliases: align CraftAlign + > ### Keywords: datasets internal + > + > ### ** Examples + > + > align_dendro() + Error in UseMethod("new_scheme_theme", th) : + no applicable method for 'new_scheme_theme' applied to an object of class "c('ggplot2::theme', 'gg', 'S7_object')" + Calls: align_dendro ... %||% -> default_schemes -> new_schemes -> new_scheme_theme + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + • plot-align/reorder-left-reverse.svg + • plot-align/reorder-left.svg + • plot-align/reorder-right.svg + • plot-align/reorder-top-reverse.svg + • plot-align/reorder-top-within-group.svg + • plot-align/reorder-top.svg + • plot-align/stack-no-data-dendrogram-input.svg + • plot-align/stack-no-data-hclust-input.svg + Error: Test failures + Execution halted + ``` + +* checking Rd cross-references ... WARNING + ``` + Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’ + Missing link or links in Rd file 'scheme_theme.Rd': + ‘[ggplot2:+.gg]{+.gg()}’ + + See section 'Cross-references' in the 'Writing R Extensions' manual. + ``` + +* checking for code/documentation mismatches ... WARNING + ``` + Codoc mismatches from Rd file 'scheme_theme.Rd': + scheme_theme + Code: function(..., line, rect, text, title, point, polygon, geom, + spacing, margins, aspect.ratio, axis.title, + axis.title.x, axis.title.x.top, axis.title.x.bottom, + axis.title.y, axis.title.y.left, axis.title.y.right, + axis.text, axis.text.x, axis.text.x.top, + axis.text.x.bottom, axis.text.y, axis.text.y.left, + axis.text.y.right, axis.text.theta, axis.text.r, + axis.ticks, axis.ticks.x, axis.ticks.x.top, + ... + strip.text.y.right, strip.switch.pad.grid, + strip.switch.pad.wrap, complete = FALSE, validate = + TRUE) + Argument names in code not in docs: + point polygon geom spacing margins legend.key.justification + panel.widths panel.heights + Mismatches in argument names (first 3): + Position: 6 Code: point Docs: aspect.ratio + Position: 7 Code: polygon Docs: axis.title + Position: 8 Code: geom Docs: axis.title.x + ``` + +## Newly fixed + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’ + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'patchwork', 'ggrastr', 'maftools' + ``` + +# gganimate + +
+ +* Version: 1.0.9 +* GitHub: https://github.com/thomasp85/gganimate +* Source code: https://github.com/cran/gganimate +* Date/Publication: 2024-02-27 14:00:03 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "gganimate")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gganimate-Ex.R’ failed + The error most likely occurred in: + + > ### Name: animate + > ### Title: Render a gganim object + > ### Aliases: animate animate.gganim print.gganim knit_print.gganim + > + > ### ** Examples + > + > anim <- ggplot(mtcars, aes(mpg, disp)) + + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(gganimate) + Loading required package: ggplot2 + > + > test_check("gganimate") + [ FAIL 6 | WARN 0 | SKIP 1 | PASS 0 ] + + ... + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + + [ FAIL 6 | WARN 0 | SKIP 1 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘gganimate.Rmd’ using rmarkdown + ``` + +# ggarrow + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/teunbrand/ggarrow +* Source code: https://github.com/cran/ggarrow +* Date/Publication: 2024-06-05 19:30:11 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "ggarrow")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggarrow-Ex.R’ failed + The error most likely occurred in: + + > ### Name: element_arrow + > ### Title: Arrow theme element + > ### Aliases: element_arrow + > + > ### ** Examples + > + > # Setting a bunch of arrows all over the theme + ... + 11. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 12. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 13. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 14. │ └─base::withCallingHandlers(...) + 15. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(...) + 18. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + + [ FAIL 1 | WARN 0 | SKIP 33 | PASS 38 ] + Deleting unused snapshots: + • geom_arrow_curve/geom-arrow-curve-without-curves.svg + • grob_arrow_path/thin-dodgerblue-arrow.svg + • scale_arrow/continous-scale-resect-continuous.svg + • scale_arrow/manual-scale-resect-discrete.svg + • scale_arrow/ordinal-scale-resect-discrete.svg + Error: Test failures + Execution halted + ``` + +# ggblanket + +
+ +* Version: 12.3.0 +* GitHub: https://github.com/davidhodge931/ggblanket +* Source code: https://github.com/cran/ggblanket +* Date/Publication: 2025-04-28 03:10:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "ggblanket")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggblanket-Ex.R’ failed + The error most likely occurred in: + + > ### Name: aes_contrast + > ### Title: A colour aesthetic for contrast + > ### Aliases: aes_contrast + > + > ### ** Examples + > + > library(ggplot2) + ... + + x_labels = \(x) str_to_sentence(x), + + ) + + + geom_text( + + mapping = aes_contrast(), + + position = position_dodge(width = 0.75, preserve = "single"), + + vjust = 1.33, + + show.legend = FALSE, + + ) + Error: Can't get S7 properties with `$`. Did you mean `plot_build@data`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggblanket.Rmd’ using rmarkdown + + Quitting from ggblanket.Rmd:96-102 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `plot_build@data`? + --- + Backtrace: + ... + + Error: processing vignette 'ggblanket.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `plot_build@data`? + --- failed re-building ‘ggblanket.Rmd’ + + SUMMARY: processing the following file failed: + ‘ggblanket.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggblend + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/mjskay/ggblend +* Source code: https://github.com/cran/ggblend +* Date/Publication: 2023-05-22 08:30:05 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "ggblend")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggblend) + > + > test_check("ggblend") + [ FAIL 3 | WARN 2 | SKIP 7 | PASS 99 ] + + ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ + ... + `actual$mapping` is an S3 object of class , a list + `expected$mapping` is an S7 object of class + Backtrace: + ▆ + 1. └─ggblend:::expect_equal_layer(...) at test-operation-adjust.R:19:3 + 2. └─testthat::expect_equal(...) at tests/testthat/helper-layer.R:26:3 + + [ FAIL 3 | WARN 2 | SKIP 7 | PASS 99 ] + Error: Test failures + Execution halted + ``` + +# ggborderline + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/wurli/ggborderline +* Source code: https://github.com/cran/ggborderline +* Date/Publication: 2022-10-25 13:45:14 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "ggborderline")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggborderline-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_borderpath + > ### Title: Connect observations + > ### Aliases: geom_borderpath geom_borderline geom_borderstep + > + > ### ** Examples + > + > require(ggplot2) + ... + 3. └─ggplot2::ggplot_build(x) + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 6. └─npscales$set_palettes(plot@theme) + 7. └─ggplot2 (local) set_palettes(..., self = self) + 8. ├─scales::as_discrete_pal(elem) + 9. └─scales:::as_discrete_pal.default(elem) + 10. └─cli::cli_abort("Cannot convert {.arg x} to a discrete palette.") + 11. └─rlang::abort(...) + Execution halted + ``` + +# ggbrain + +
+ +* Version: 0.9.0 +* GitHub: https://github.com/michaelhallquist/ggbrain +* Source code: https://github.com/cran/ggbrain +* Date/Publication: 2025-03-20 01:30:02 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "ggbrain")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggbrain-Ex.R’ failed + The error most likely occurred in: + + > ### Name: define + > ### Title: Adds contrast definitions to the ggbrain plot + > ### Aliases: define + > + > ### ** Examples + > + > # T1-weighted template + ... + > # simple example of a difference contrast, separating definition from usage in geom_brain + > gg_obj <- ggbrain() + + + images(c(underlay = t1, signed_pe = signed_pe, abspe = abspe)) + + + slices(c("x = 25%", "x = 75%")) + + + define("signed_gt_abs := signed_pe - abspe") + + + geom_brain("signed_gt_abs") + Error in (function (value) : + Assertion on 'value' failed: Must inherit from class 'uneval', but has classes 'ggplot2::mapping','gg','S7_object'. + Calls: geom_brain ... -> -> makeAssertion -> mstop + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggbrain_aesthetics.Rmd’ using rmarkdown + --- finished re-building ‘ggbrain_aesthetics.Rmd’ + + --- re-building ‘ggbrain_introduction.Rmd’ using rmarkdown + + Quitting from ggbrain_introduction.Rmd:226-230 [unnamed-chunk-15] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ... + + Error: processing vignette 'ggbrain_labels.Rmd' failed with diagnostics: + Assertion on 'value' failed: Must inherit from class 'uneval', but has classes 'ggplot2::mapping','gg','S7_object'. + --- failed re-building ‘ggbrain_labels.Rmd’ + + SUMMARY: processing the following files failed: + ‘ggbrain_introduction.Rmd’ ‘ggbrain_labels.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.1Mb + sub-directories of 1Mb or more: + doc 1.6Mb + extdata 2.2Mb + libs 5.5Mb + ``` + +# ggbreak + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/YuLab-SMU/ggbreak +* Source code: https://github.com/cran/ggbreak +* Date/Publication: 2025-02-04 17:50:10 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "ggbreak")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggbreak-Ex.R’ failed + The error most likely occurred in: + + > ### Name: scale_wrap + > ### Title: scale-wrap + > ### Aliases: scale_wrap + > + > ### ** Examples + > + > library(ggplot2) + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ggbreak.Rmd’ using rmarkdown + + Quitting from ggbreak.Rmd:61-78 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ggbreak.Rmd' failed with diagnostics: + Can't add `scale_x_break(c(7, 17))` to a object. + --- failed re-building ‘ggbreak.Rmd’ + + SUMMARY: processing the following file failed: + ‘ggbreak.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggbuildr + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/ggbuildr +* Date/Publication: 2018-02-05 18:45:42 UTC +* Number of recursive dependencies: 55 + +Run `revdepcheck::cloud_details(, "ggbuildr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggbuildr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: build_plot + > ### Title: Incrementally build and save layers of a ggplot object into + > ### numbered files + > ### Aliases: build_plot + > + > ### ** Examples + > + ... + 10. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "layers", value = ``) + 11. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 12. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 13. ├─S7 (local) ``("Can't find property %s@%s", ``, "i") + 14. │ └─base::stop(msg, call. = FALSE) + 15. └─base::.handleSimpleError(...) + 16. └─purrr (local) h(simpleError(msg, call)) + 17. └─cli::cli_abort(...) + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggbuildr) + Loading required package: ggplot2 + > + > test_check("ggbuildr") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ] + + ... + 13. ├─S7 (local) ``("Can't find property %s@%s", ``, "i") + 14. │ └─base::stop(msg, call. = FALSE) + 15. └─base::.handleSimpleError(...) + 16. └─purrr (local) h(simpleError(msg, call)) + 17. └─cli::cli_abort(...) + 18. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ggbump + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/ggbump +* Date/Publication: 2020-04-24 16:00:02 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "ggbump")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggbump) + > + > test_check("ggbump") + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test-numeric_inputs.R:21:3'): multiplication works ──────────────── + ... %>% class() not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test-numeric_inputs.R:26:3'): multiplication works ──────────────── + ... %>% class() not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ggcharts + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/thomas-neitmann/ggcharts +* Source code: https://github.com/cran/ggcharts +* Date/Publication: 2020-05-20 00:40:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "ggcharts")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggcharts-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pyramid_chart + > ### Title: Pyramid Chart + > ### Aliases: pyramid_chart + > + > ### ** Examples + > + > data(popch) + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# ggcorset + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/kbelisar/ggcorset +* Source code: https://github.com/cran/ggcorset +* Date/Publication: 2024-04-07 13:33:01 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "ggcorset")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘corset_plot_intro.Rmd’ using rmarkdown + + Quitting from corset_plot_intro.Rmd:35-73 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'corset_plot_intro.Rmd' failed with diagnostics: + Can't combine `..1` and `..2` . + --- failed re-building ‘corset_plot_intro.Rmd’ + + SUMMARY: processing the following file failed: + ‘corset_plot_intro.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggdag + +
+ +* Version: 0.2.13 +* GitHub: https://github.com/r-causal/ggdag +* Source code: https://github.com/cran/ggdag +* Date/Publication: 2024-07-22 09:50:10 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "ggdag")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggdag-Ex.R’ failed + The error most likely occurred in: + + > ### Name: as_tbl_graph + > ### Title: Convert DAGS to tidygraph + > ### Aliases: as_tbl_graph as_tbl_graph.tidy_dagitty as_tbl_graph.dagitty + > + > ### ** Examples + > + > + ... + Error in `geom_edge_diagonal()`: + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─ggraph::geom_edge_diagonal() + 2. └─ggplot2::layer(...) + 3. └─ggplot2:::validate_mapping(mapping, call_env) + 4. └─cli::cli_abort(msg, call = call) + 5. └─rlang::abort(...) + Execution halted + ``` + +# ggdark + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/ggdark +* Date/Publication: 2019-01-11 17:30:06 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "ggdark")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggdark-Ex.R’ failed + The error most likely occurred in: + + > ### Name: dark_mode + > ### Title: Activate dark mode on a 'ggplot2' theme + > ### Aliases: dark_mode + > + > ### ** Examples + > + > library(ggplot2) + ... + > + > p1 <- ggplot(iris, aes(Sepal.Width, Sepal.Length, color = Species)) + + + geom_point() + > + > p1 # theme returned by theme_get() + > p1 + dark_mode() # activate dark mode on theme returned by theme_get() + Error in match(x, table, nomatch = 0L) : + 'match' requires vector arguments + Calls: dark_mode -> %in% + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggdark) + > + > test_check("ggdark") + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Error ('test_dark_mode.R:10:1'): (code run outside of `test_that()`) ──────── + Error in `match(x, table, nomatch = 0L)`: 'match' requires vector arguments + Backtrace: + ▆ + 1. └─ggdark::dark_mode(light_theme) at test_dark_mode.R:10:1 + 2. └─geoms[["GeomPoint"]]$default_aes$colour %in% ... + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ggdemetra + +
+ +* Version: 0.2.8 +* GitHub: https://github.com/AQLT/ggdemetra +* Source code: https://github.com/cran/ggdemetra +* Date/Publication: 2024-02-04 14:50:02 UTC +* Number of recursive dependencies: 52 + +Run `revdepcheck::cloud_details(, "ggdemetra")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggdemetra’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: `aes_()` was deprecated in ggplot2 3.0.0. + See ‘/tmp/workdir/ggdemetra/new/ggdemetra.Rcheck/00install.out’ for details. + ``` + +# ggdist + +
+ +* Version: 3.3.3 +* GitHub: https://github.com/mjskay/ggdist +* Source code: https://github.com/cran/ggdist +* Date/Publication: 2025-04-23 00:20:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "ggdist")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + • test.stat_sample_slabinterval/nas-with-na-rm-true.svg + • test.subguide/dots-subguide-with-side-vertical.svg + • test.subguide/integer-subguide-with-zero-range.svg + • test.subguide/slab-subguide-with-inside-labels-vertical.svg + • test.subguide/slab-subguide-with-outside-labels-vert.svg + • test.subguide/slab-subguide-with-outside-labels.svg + • test.subguide/slab-subguide-with-side-vertical.svg + • test.theme_ggdist/facet-titles-on-left.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘dotsinterval.Rmd’ using rmarkdown + Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : + cannot find pngquant; please install and put it in PATH + Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : + cannot find pngquant; please install and put it in PATH + Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : + cannot find pngquant; please install and put it in PATH + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.6Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 1.3Mb + help 1.5Mb + ``` + +# ggDoE + +
+ +* Version: 0.8 +* GitHub: https://github.com/toledo60/ggDoE +* Source code: https://github.com/cran/ggDoE +* Date/Publication: 2024-02-10 04:50:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "ggDoE")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggDoE-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gg_lm + > ### Title: Regression Diagnostic Plots with ggplot2 + > ### Aliases: gg_lm + > + > ### ** Examples + > + > model <- lm(mpg ~ wt + am + gear, data = mtcars) + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +# ggDoubleHeat + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/PursuitOfDataScience/ggDoubleHeat +* Source code: https://github.com/cran/ggDoubleHeat +* Date/Publication: 2023-08-24 21:00:04 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "ggDoubleHeat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggDoubleHeat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_heat_circle + > ### Title: Heatcircle + > ### Aliases: geom_heat_circle + > + > ### ** Examples + > + > + ... + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_list, ggplot2::ggplot))`(...) + 13. └─ggplot2::ggplot_add(o, plot, object_name) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +# ggeasy + +
+ +* Version: 0.1.5 +* GitHub: https://github.com/jonocarroll/ggeasy +* Source code: https://github.com/cran/ggeasy +* Date/Publication: 2024-11-03 05:50:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "ggeasy")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggeasy-Ex.R’ failed + The error most likely occurred in: + + > ### Name: easy_add_legend_title + > ### Title: Easily add legend title(s) + > ### Aliases: easy_add_legend_title + > + > ### ** Examples + > + > + ... + > # Add legend title to a specific aesthetic + > ggplot(mtcars, aes(wt, mpg, colour = cyl, size = hp)) + + + geom_point() + easy_add_legend_title(col = "Number of Cylinders") + > + > # Add legend title to all aesthetics + > ggplot(mtcars, aes(wt, mpg, colour = cyl)) + + + geom_point() + easy_add_legend_title("Number of Cylinders") + Error: object is invalid: + - labels cannot contain duplicate names (colour, linetype, shape, and size). + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggeasy) + > + > test_check("ggeasy") + [ FAIL 6 | WARN 0 | SKIP 1 | PASS 151 ] + + ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ + ... + 8. └─S7::validate(object, recursive = !parent_validated) + + [ FAIL 6 | WARN 0 | SKIP 1 | PASS 151 ] + Deleting unused snapshots: + • labs/labels-attrib.svg + • labs/labels-manual.svg + • labs/labels-mytitle.svg + • labs/labels-y-col.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘shortcuts.Rmd’ using rmarkdown + ``` + +# GGEBiplots + +
+ +* Version: 0.1.3 +* GitHub: NA +* Source code: https://github.com/cran/GGEBiplots +* Date/Publication: 2022-02-09 16:20:02 UTC +* Number of recursive dependencies: 36 + +Run `revdepcheck::cloud_details(, "GGEBiplots")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘GGEBiplots-Ex.R’ failed + The error most likely occurred in: + + > ### Name: CompareGens + > ### Title: Compare two genotypes biplot + > ### Aliases: CompareGens + > ### Keywords: GGE + > + > ### ** Examples + > + > data(Ontario) + > GGE1<-GGEModel(Ontario) + > CompareGens(GGE1,"cas","luc") + Error: object properties are invalid: + - @face must be or , not + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘gge’ + ``` + +# ggEDA + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/CCICB/ggEDA +* Source code: https://github.com/cran/ggEDA +* Date/Publication: 2025-05-07 12:00:02 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "ggEDA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggEDA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggparallel + > ### Title: Parallel Coordinate Plots + > ### Aliases: ggparallel + > + > ### ** Examples + > + > ggparallel( + ... + ▆ + 1. └─ggEDA::ggparallel(data = minibeans, col_colour = "Class", order_columns_by = "auto") + 2. ├─assertions::assert_class(options, "ggparallel_options", msg = "Value parsed to 'options' argument must be created by {.code ggparallel_options()}") + 3. │ └─base::eval(match.call()[[2]], envir = call) + 4. │ └─base::eval(match.call()[[2]], envir = call) + 5. └─ggEDA::ggparallel_options() + 6. └─assertions::assert_class(x_axis_gridlines, "element") + 7. └─cli::cli_abort(msg, call = call, .envir = msg_evaluation_environment) + 8. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + i Actually got a with text: + Can't add `x[[i]]` to a object. + ── Failure ('test-ggstack.R:421:3'): ggstack heatmap handles NA values and shows labels ── + Expected `ggstack(data = data, col_id = "ID", options = opts, verbose = FALSE)` to run without any errors. + i Actually got a with text: + Can't add `x[[i]]` to a object. + + [ FAIL 31 | WARN 49 | SKIP 2 | PASS 94 ] + Error: Test failures + Execution halted + ``` + +# ggedit + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/yonicd/ggedit +* Source code: https://github.com/cran/ggedit +* Date/Publication: 2024-03-04 14:40:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "ggedit")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggedit-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compare + > ### Title: compare + > ### Aliases: compare + > + > ### ** Examples + > + > compare(ggplot2::theme_bw(),ggplot2::theme_get()) + Error in as.vector(x, "list") : + cannot coerce type 'object' to vector of type 'list' + Calls: compare ... themeFetchFull -> lapply -> as.list -> as.list.default + Execution halted + ``` + +# ggenealogy + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/ggenealogy +* Date/Publication: 2024-02-21 16:00:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "ggenealogy")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggenealogy-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotDegMatrix + > ### Title: Returns the image object to show the heat map of degrees between + > ### the inputted set of vertices + > ### Aliases: plotDegMatrix + > + > ### ** Examples + > + ... + > p + ggplot2::scale_fill_continuous(low = "white", high = "darkgreen") + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─ggplot2::scale_fill_continuous(low = "white", high = "darkgreen") + 2. └─ggplot2:::scale_backward_compatibility(...) + 3. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 4. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggenealogy.Rnw’ using Sweave + Warning: `qplot()` was deprecated in ggplot2 3.4.0. + ℹ The deprecated feature was likely used in the ggenealogy + package. + Please report the issue to the authors. + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 + 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggenealogy + ... + Error in scale_backward_compatibility(..., guide = guide, na.value = na.value, : + Unknown scale type: + + --- failed re-building ‘ggenealogy.Rnw’ + + SUMMARY: processing the following file failed: + ‘ggenealogy.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggenealogy.Rnw’ using Sweave + Warning: Removed 1 row containing missing values or values outside + the scale range (`geom_segment()`). + Warning: Removed 1 row containing missing values or values outside + the scale range (`geom_segment()`). + Warning: Removed 1 row containing missing values or values outside + the scale range (`geom_segment()`). + Warning: Removed 1 row containing missing values or values outside + the scale range (`geom_segment()`). + ... + l.4 \usepackage + [T1]{fontenc}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘ggenealogy.Rnw’ + + SUMMARY: processing the following file failed: + ‘ggenealogy.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2356 marked UTF-8 strings + ``` + +# ggetho + +
+ +* Version: 0.3.7 +* GitHub: https://github.com/rethomics/ggetho +* Source code: https://github.com/cran/ggetho +* Date/Publication: 2022-11-24 09:40:08 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "ggetho")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggetho-Ex.R’ failed + The error most likely occurred in: + + > ### Name: stat_ld_annotations + > ### Title: Compute and display light/dark annotations onto a plot object + > ### Aliases: stat_ld_annotations + > + > ### ** Examples + > + > library(behavr) + ... + Warning: The following aesthetics were dropped during statistical transformation: x and + y. + ℹ This can happen when ggplot fails to infer the correct grouping structure in + the data. + ℹ Did you forget to specify a `group` aesthetic or to convert a numerical + variable into a factor? + > # On a tile plot: + > pl <- ggetho(dt, aes(z = asleep)) + stat_tile_etho() + Error: Can't get S7 properties with `$`. Did you mean `p@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggetho) + Loading required package: ggplot2 + Loading required package: behavr + Loading required package: data.table + > + > test_check("ggetho") + ... + Error: Can't get S7 properties with `$`. Did you mean `p@layout`? + Backtrace: + ▆ + 1. └─ggetho::ggetho(dt, aes(z = activity)) at test-stat_tile.R:9:3 + 2. ├─p$layout + 3. └─S7:::`$.S7_object`(p, "layout") + + [ FAIL 5 | WARN 286 | SKIP 1 | PASS 26 ] + Error: Test failures + Execution halted + ``` + +# ggExtra + +
+ +* Version: 0.10.1 +* GitHub: https://github.com/daattali/ggExtra +* Source code: https://github.com/cran/ggExtra +* Date/Publication: 2023-08-21 14:40:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "ggExtra")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggExtra.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘R6’ ‘scales’ ‘utils’ + All declared Imports should be used. + ``` + +# ggfields + +
+ +* Version: 0.0.6 +* GitHub: https://github.com/pepijn-devries/ggfields +* Source code: https://github.com/cran/ggfields +* Date/Publication: 2024-02-26 14:40:03 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "ggfields")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggfields-Ex.R’ failed + The error most likely occurred in: + + > ### Name: angle_correction + > ### Title: Calculate correction for angle in the plot coordinate system + > ### Aliases: angle_correction + > + > ### ** Examples + > + > ## Create a data.frame with some xy-coordinates and all angles pointing North (0 degrees) + ... + + default_crs = 4326 + + ) + + ) + > + > ## When plotting as lon-lat, the angle correction will be zero + > angle_correction(d, params_mockup, ggplot2::coord_sf(default_crs = 4326)) + Error in panel_params$guides$get_guide(aesthetics) : + attempt to apply non-function + Calls: angle_correction ... train_panel_guides -> -> train_panel_guides + Execution halted + ``` + +# ggFishPlots + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/DeepWaterIMR/ggFishPlots +* Source code: https://github.com/cran/ggFishPlots +* Date/Publication: 2024-06-26 10:20:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "ggFishPlots")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggFishPlots-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_catchcurve + > ### Title: Plot catch curve + > ### Aliases: plot_catchcurve + > + > ### ** Examples + > + > # Catch curve including all ages + ... + 3. └─ggplot2::ggplot_build(x) + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 6. └─ggplot2:::plot_theme(plot) + 7. └─ggplot2:::check_theme(theme) + 8. └─base::mapply(...) + 9. └─ggplot2 (local) ``(...) + 10. └─cli::cli_abort(...) + 11. └─rlang::abort(...) + Execution halted + ``` + +# ggfixest + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/grantmcdermott/ggfixest +* Source code: https://github.com/cran/ggfixest +* Date/Publication: 2025-05-14 02:20:02 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "ggfixest")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > ## Throttle CPU threads if R CMD check (for CRAN) + > + > if (any(grepl("_R_CHECK", names(Sys.getenv()), fixed = TRUE))) { + + # fixest + + if (requireNamespace("fixest", quietly = TRUE)) { + + library(fixest) + + setFixest_nthreads(1) + ... + call| expect_snapshot_plot(p19a, label = "ggiplot_multi_complex_kitchen_iid") + diff| 1774 + info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png + ----- FAILED[]: test_ggiplot.R<193--193> + call| expect_snapshot_plot(p19b, label = "ggiplot_multi_complex_kitchen_iid") + diff| 1774 + info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png + Error: 5 out of 111 tests failed + In addition: There were 11 warnings (use warnings() to see them) + Execution halted + ``` + +# ggfocus + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/Freguglia/ggfocus +* Source code: https://github.com/cran/ggfocus +* Date/Publication: 2020-01-23 13:20:02 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "ggfocus")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggfocus-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggfocus + > ### Title: (Deprecated) Sets focus scales to an existing 'ggplot' object + > ### Aliases: ggfocus + > + > ### ** Examples + > + > library(ggplot2) + > p <- ggplot(iris,aes(x=Sepal.Length,y=Petal.Length)) + geom_point() + > ggfocus(p, Species, "versicolor") + The function 'ggfocus()' is deprecated, consider using the family scale_*_focus() instead. + Warning: `select_()` was deprecated in dplyr 0.7.0. + ℹ Please use `select()` instead. + ℹ The deprecated feature was likely used in the ggfocus package. + Please report the issue at . + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction_to_ggfocus.Rmd’ using rmarkdown + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ggfootball + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/aymennasri/ggfootball +* Source code: https://github.com/cran/ggfootball +* Date/Publication: 2025-03-22 23:00:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "ggfootball")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggfootball-Ex.R’ failed + The error most likely occurred in: + + > ### Name: xg_map + > ### Title: Plot shots xG of a football match + > ### Aliases: xg_map + > + > ### ** Examples + > + > xg_map(26631, title = "xG Map") + Warning in (function (mapping = NULL, data = NULL, stat = "identity", position = "identity", : + Ignoring unknown aesthetics: tooltip and data_id + Error in self$params$labeller(labels_data) : + attempt to apply non-function + Calls: xg_map ... -> render -> -> draw_panels + Execution halted + ``` + +# ggforce + +
+ +* Version: 0.4.2 +* GitHub: https://github.com/thomasp85/ggforce +* Source code: https://github.com/cran/ggforce +* Date/Publication: 2024-02-19 11:00:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "ggforce")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggforce-Ex.R’ failed + The error most likely occurred in: + + > ### Name: facet_matrix + > ### Title: Facet by different data columns + > ### Aliases: facet_matrix + > + > ### ** Examples + > + > # Standard use: + > ggplot(mpg) + + + geom_point(aes(x = .panel_x, y = .panel_y)) + + + facet_matrix(vars(displ, cty, hwy)) + Error in match.fun(params$labeller) : + 'params$labeller' is not a function, character or symbol + Calls: ... attach_strips -> -> format_strip_labels -> match.fun + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 27.8Mb + sub-directories of 1Mb or more: + R 1.5Mb + help 1.2Mb + libs 25.0Mb + ``` + +# ggformula + +
+ +* Version: 0.12.0 +* GitHub: https://github.com/ProjectMOSAIC/ggformula +* Source code: https://github.com/cran/ggformula +* Date/Publication: 2023-11-09 12:30:07 UTC +* Number of recursive dependencies: 120 + +Run `revdepcheck::cloud_details(, "ggformula")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggformula-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gf_labs + > ### Title: Non-layer functions for gf plots + > ### Aliases: gf_labs gf_lims gf_refine + > + > ### ** Examples + > + > gf_dens(~cesd, color = ~substance, linewidth = 1.5, data = mosaicData::HELPrct) |> + ... + + ) |> + + gf_theme(theme_classic()) |> + + gf_theme( + + axis.text.y = element_blank(), + + legend.position = "top", + + plot.title = element_text(hjust = 0.5, color = "navy"), + + plot.subtitle = element_text(hjust = 0.5, color = "navy", size = 12) + + ) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggformula) + Loading required package: ggplot2 + Loading required package: scales + Loading required package: ggridges + + New to ggformula? Try the tutorials: + ... + • layer-factory/gf-text1.svg + • layer-factory/gf-text2.svg + • layer-factory/gf-tile1.svg + • layer-factory/proportions-within-all-dodge.svg + • layer-factory/proportions-within-fill-dodge.svg + • layer-factory/proportions-within-fill-facet-grid-and-group.svg + • layer-factory/proportions-within-fill-facet-grid.svg + • layer-factory/proportions-within-group-facet-grid.svg + Error: Test failures + Execution halted + ``` + +* checking for code/documentation mismatches ... WARNING + ``` + Codoc mismatches from Rd file 'gf_lines.Rd': + gf_hline + Code: function(object = NULL, gformula = NULL, data = NULL, ..., + yintercept, color, linetype, linewidth, alpha, xlab, + ylab, title, subtitle, caption, position = "identity", + show.legend = NA, show.help = NULL, inherit = FALSE, + environment = parent.frame()) + Docs: function(object = NULL, gformula = NULL, data = NULL, ..., + yintercept, color, linetype, linewidth, alpha, xlab, + ylab, title, subtitle, caption, show.legend = NA, + ... + xintercept, color, linetype, linewidth, alpha, xlab, + ylab, title, subtitle, caption, show.legend = NA, + show.help = NULL, inherit = FALSE, environment = + parent.frame()) + Argument names in code not in docs: + position + Mismatches in argument names (first 3): + Position: 15 Code: position Docs: show.legend + Position: 16 Code: show.legend Docs: show.help + Position: 17 Code: show.help Docs: inherit + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘akima’, ‘ggforce’ + ``` + +# ggfortify + +
+ +* Version: 0.4.17 +* GitHub: https://github.com/sinhrks/ggfortify +* Source code: https://github.com/cran/ggfortify +* Date/Publication: 2024-04-17 04:30:04 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "ggfortify")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > library(testthat) + > + > suppressWarnings(RNGversion("3.5.0")) + > set.seed(1, sample.kind = "Rejection") + > + > test_check('ggfortify') + Loading required package: ggfortify + ... + + x[3]: "#595959FF" + y[3]: "grey35" + + x[4]: "#595959FF" + y[4]: "grey35" + + [ FAIL 5 | WARN 13 | SKIP 48 | PASS 734 ] + Error: Test failures + Execution halted + ``` + +# ggfun + +
+ +* Version: 0.1.8 +* GitHub: https://github.com/YuLab-SMU/ggfun +* Source code: https://github.com/cran/ggfun +* Date/Publication: 2024-12-03 10:20:02 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "ggfun")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggfun-Ex.R’ failed + The error most likely occurred in: + + > ### Name: element_blinds + > ### Title: this element is used to control the line color of + > ### panel.grid.major/minor.x or panel.grid.major/minor.y + > ### Aliases: element_blinds + > + > ### ** Examples + > + ... + 3. └─ggplot2::ggplot_build(x) + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 6. └─ggplot2:::plot_theme(plot) + 7. └─ggplot2:::check_theme(theme) + 8. └─base::mapply(...) + 9. └─ggplot2 (local) ``(...) + 10. └─cli::cli_abort(...) + 11. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ggfun.Rmd’ using rmarkdown + + Quitting from ggfun.Rmd:50-55 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ggfun.Rmd' failed with diagnostics: + ... + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into + . + --- failed re-building ‘ggfun.Rmd’ + + SUMMARY: processing the following file failed: + ‘ggfun.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggfx + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/thomasp85/ggfx +* Source code: https://github.com/cran/ggfx +* Date/Publication: 2022-08-22 08:00:06 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "ggfx")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘custom_filters.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) render_context.Rd:42: Lost braces; missing escapes or markup? + 42 | \item{xmin, ymin, xmax, ymax}{Boundaries of the area in pixels. {0,0} is the + | ^ + ``` + +# gggap + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/cmoralesmx/gggap +* Source code: https://github.com/cran/gggap +* Date/Publication: 2020-11-20 09:20:02 UTC +* Number of recursive dependencies: 27 + +Run `revdepcheck::cloud_details(, "gggap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gggap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gggap_legend + > ### Title: Add Legend to gggap() + > ### Aliases: gggap_legend + > + > ### ** Examples + > + > library(ggplot2) + ... + 12. └─ggplot2::ggplot_build(x) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 15. └─ggplot2:::plot_theme(plot) + 16. └─ggplot2:::check_theme(theme) + 17. └─base::mapply(...) + 18. └─ggplot2 (local) ``(...) + 19. └─cli::cli_abort(...) + 20. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# gggenomes + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/thackl/gggenomes +* Source code: https://github.com/cran/gggenomes +* Date/Publication: 2024-08-30 11:40:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "gggenomes")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gggenomes-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add_feats + > ### Title: Add different types of tracks + > ### Aliases: add_feats add_links add_subfeats add_sublinks add_clusters + > ### add_tracks + > + > ### ** Examples + > + ... + 10. │ ├─base::tryCatch(...) + 11. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 12. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 13. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 14. │ └─base::withCallingHandlers(...) + 15. └─ggplot2:::validate_as_data_frame(model) + 16. └─ggplot2:::check_data_frame_like(data) + 17. └─cli::cli_abort("{.code colnames(data)} must return a {.cls character} of length {.code ncol(data)}.") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘emales.Rmd’ using rmarkdown + --- finished re-building ‘emales.Rmd’ + + --- re-building ‘flip.Rmd’ using rmarkdown + + Quitting from flip.Rmd:16-44 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + ... + a valid -like object coercible by `as.data.frame()`. + Caused by error in `check_data_frame_like()`: + ! `colnames(data)` must return a of length `ncol(data)`. + --- failed re-building ‘gggenomes.Rmd’ + + SUMMARY: processing the following files failed: + ‘flip.Rmd’ ‘gggenomes.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggghost + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/jonocarroll/ggghost +* Source code: https://github.com/cran/ggghost +* Date/Publication: 2025-04-15 05:50:07 UTC +* Number of recursive dependencies: 47 + +Run `revdepcheck::cloud_details(, "ggghost")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggghost-Ex.R’ failed + The error most likely occurred in: + + > ### Name: -.gg + > ### Title: Remove a call from a ggghost object + > ### Aliases: -.gg + > + > ### ** Examples + > + > ## create a ggghost object + ... + > ## remove the geom_smooth + > z - geom_smooth() + > + > ## remove the labels + > ## NOTE: argument must be present and able to be + > ## evaluated in scope + > z - labs(TRUE) # works + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggghost) + Loading required package: ggplot2 + Loading required package: animation + Registered S3 method overwritten by 'ggghost': + method from + +.gg ggplot2 + ... + ── Error: (code run outside of `test_that()`) ────────────────────────────────── + + Error: C stack usage 9962692 is too close to the limit + ── Error ('test_methods.R:15:1'): ggghost methods behave correctly ───────────── + + Error: C stack usage 9962036 is too close to the limit + + [ FAIL 4 | WARN 5 | SKIP 0 | PASS 34 ] + Error: Test failures + Execution halted + ``` + +# ggh4x + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/teunbrand/ggh4x +* Source code: https://github.com/cran/ggh4x +* Date/Publication: 2024-12-15 17:20:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "ggh4x")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggh4x-Ex.R’ failed + The error most likely occurred in: + + > ### Name: element_part_rect + > ### Title: Partial rectangle theme element + > ### Aliases: element_part_rect + > + > ### ** Examples + > + > ggplot(iris, aes(Sepal.Width, Sepal.Length)) + + ... + 11. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 12. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 13. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 14. │ └─base::withCallingHandlers(...) + 15. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(...) + 18. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggh4x) + Loading required package: ggplot2 + > + > test_check("ggh4x") + [ FAIL 81 | WARN 41 | SKIP 14 | PASS 367 ] + + ... + Backtrace: + ▆ + 1. └─ggh4x::strip_themed(...) at test-strips.R:63:3 + 2. └─ggh4x:::validate_element_list(background_y, "element_rect") + 3. └─cli::cli_abort("The {.arg {argname}} argument should be a list of {.cls {prototype}} \\\n objects.") + 4. └─rlang::abort(...) + + [ FAIL 81 | WARN 41 | SKIP 14 | PASS 367 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Facets.Rmd’ using rmarkdown + ``` + +# gghalves + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/erocoar/gghalves +* Source code: https://github.com/cran/gghalves +* Date/Publication: 2022-11-20 11:40:02 UTC +* Number of recursive dependencies: 50 + +Run `revdepcheck::cloud_details(, "gghalves")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gghalves-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_half_point + > ### Title: Points with jitter for half geoms. + > ### Aliases: geom_half_point + > + > ### ** Examples + > + > ggplot(iris, aes(x = Species, y = Petal.Width, fill = Species)) + + ... + 30. │ └─base::lapply(...) + 31. │ └─ggplot2 (local) FUN(X[[i]], ...) + 32. │ └─ggplot2 (local) apply_fun(cur_data) + 33. │ └─ggplot2 (local) fun(x, ...) + 34. └─base::.handleSimpleError(...) + 35. └─rlang (local) h(simpleError(msg, call)) + 36. └─handlers[[1L]](cnd) + 37. └─cli::cli_abort(...) + 38. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘gghalves.Rmd’ using rmarkdown + + Quitting from gghalves.Rmd:39-42 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'gghalves.Rmd' failed with diagnostics: + ... + ℹ Error occurred in the 1st layer. + Caused by error in `fun()`: + ! argument "layout" is missing, with no default + --- failed re-building ‘gghalves.Rmd’ + + SUMMARY: processing the following file failed: + ‘gghalves.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘grDevices’ ‘gtable’ + All declared Imports should be used. + ``` + +# gghighlight + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/yutannihilation/gghighlight +* Source code: https://github.com/cran/gghighlight +* Date/Publication: 2023-12-16 01:00:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "gghighlight")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gghighlight-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gghighlight + > ### Title: Highlight Data With Predicate + > ### Aliases: gghighlight + > + > ### ** Examples + > + > d <- data.frame( + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(gghighlight) + Loading required package: ggplot2 + > + > test_check("gghighlight") + label_key: type + Too many data points, skip labeling + ... + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + + [ FAIL 13 | WARN 1 | SKIP 0 | PASS 114 ] + Deleting unused snapshots: + • vdiffr/simple-bar-chart-with-facet.svg + • vdiffr/simple-line-chart.svg + • vdiffr/simple-point-chart.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘gghighlight.Rmd’ using rmarkdown + ``` + +# ggHoriPlot + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/rivasiker/ggHoriPlot +* Source code: https://github.com/cran/ggHoriPlot +* Date/Publication: 2022-10-11 16:22:33 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "ggHoriPlot")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘examples.Rmd’ using rmarkdown + ``` + +# gghourglass + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/pepijn-devries/gghourglass +* Source code: https://github.com/cran/gghourglass +* Date/Publication: 2025-04-05 14:20:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "gghourglass")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gghourglass-Ex.R’ failed + The error most likely occurred in: + + > ### Name: AnnotateLunarphase + > ### Title: Annotate ggplot with lunar phases + > ### Aliases: AnnotateLunarphase annotate_lunarphase + > ### Keywords: datasets + > + > ### ** Examples + > + ... + 17. │ └─vctrs (local) ``() + 18. │ ├─x[i = i] + 19. │ └─grid:::`[.unit`(x = x, i = i) + 20. │ └─base::stop(...) + 21. └─base::.handleSimpleError(...) + 22. └─rlang (local) h(simpleError(msg, call)) + 23. └─handlers[[1L]](cnd) + 24. └─cli::cli_abort(...) + 25. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(gghourglass) + > + > test_check("gghourglass") + NULL + [ FAIL 1 | WARN 2 | SKIP 4 | PASS 3 ] + + ... + 24. │ └─base::stop(...) + 25. └─base::.handleSimpleError(...) + 26. └─rlang (local) h(simpleError(msg, call)) + 27. └─handlers[[1L]](cnd) + 28. └─cli::cli_abort(...) + 29. └─rlang::abort(...) + + [ FAIL 1 | WARN 2 | SKIP 4 | PASS 3 ] + Error: Test failures + Execution halted + ``` + +# gginnards + +
+ +* Version: 0.2.0-1 +* GitHub: https://github.com/aphalo/gginnards +* Source code: https://github.com/cran/gginnards +* Date/Publication: 2024-11-14 00:10:02 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "gginnards")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gginnards-Ex.R’ failed + The error most likely occurred in: + + > ### Name: delete_layers + > ### Title: Layer manipulation. + > ### Aliases: delete_layers append_layers move_layers shift_layers + > ### which_layers extract_layers top_layer bottom_layer num_layers + > + > ### ** Examples + > + ... + + gp = factor(rep(letters[1:3], each = 10)), + + y = rnorm(30) + + ) + > p <- ggplot(df, aes(gp, y)) + + + geom_point() + + + stat_summary(fun.data = "mean_se", colour = "red") + > p + > delete_layers(p, "GeomPoint") + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘user-guide-1.Rmd’ using rmarkdown + ``` + +# ggip + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/davidchall/ggip +* Source code: https://github.com/cran/ggip +* Date/Publication: 2023-04-04 04:10:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "ggip")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggip) + Loading required package: ggplot2 + Loading required package: ipaddress + > + > test_check("ggip") + [ FAIL 10 | WARN 0 | SKIP 5 | PASS 71 ] + ... + ── Failure ('test-theme-ip.R:7:5'): themes drop elements ─────────────────────── + t$panel.grid inherits from 'ggplot2::element_blank'/'ggplot2::element'/'S7_object' not 'element_blank'. + Backtrace: + ▆ + 1. └─ggip (local) expect_simplistic_theme(theme_ip_dark()) at test-theme-ip.R:11:3 + 2. └─testthat::expect_s3_class(t$panel.grid, "element_blank") at test-theme-ip.R:7:5 + + [ FAIL 10 | WARN 0 | SKIP 5 | PASS 71 ] + Error: Test failures + Execution halted + ``` + +# ggiraph + +
+ +* Version: 0.8.13 +* GitHub: https://github.com/davidgohel/ggiraph +* Source code: https://github.com/cran/ggiraph +* Date/Publication: 2025-03-28 10:20:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "ggiraph")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggiraph-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_boxplot_interactive + > ### Title: Create interactive boxplot + > ### Aliases: geom_boxplot_interactive + > + > ### ** Examples + > + > # add interactive boxplot ------- + ... + 25. │ └─ggplot2 (local) draw_panel(..., self = self) + 26. │ └─base::lapply(...) + 27. │ └─ggplot2 (local) FUN(X[[i]], ...) + 28. │ └─self$draw_group(group, panel_params, coord, ...) + 29. └─base::.handleSimpleError(...) + 30. └─rlang (local) h(simpleError(msg, call)) + 31. └─handlers[[1L]](cnd) + 32. └─cli::cli_abort(...) + 33. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > if (requireNamespace("tinytest", quietly = TRUE)) { + + tinytest::test_package("ggiraph") + + } + + test-annotate_interactive.R... 0 tests + test-annotate_interactive.R... 0 tests + test-annotate_interactive.R... 0 tests + ... + 32. │ └─ggplot2 (local) FUN(X[[i]], ...) + 33. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params)) + 34. │ └─self$draw_panel(...) + 35. └─base::.handleSimpleError(...) + 36. └─rlang (local) h(simpleError(msg, call)) + 37. └─handlers[[1L]](cnd) + 38. └─cli::cli_abort(...) + 39. └─rlang::abort(...) + There were 50 or more warnings (use warnings() to see the first 50) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.1Mb + sub-directories of 1Mb or more: + R 1.5Mb + libs 5.2Mb + ``` + +# ggiraphExtra + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/cardiomoon/ggiraphExtra +* Source code: https://github.com/cran/ggiraphExtra +* Date/Publication: 2020-10-06 07:00:02 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "ggiraphExtra")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggiraphExtra-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggBoxplot + > ### Title: Draw boxplots of a data.frame + > ### Aliases: ggBoxplot + > + > ### ** Examples + > + > require(ggplot2) + ... + 22. │ └─ggplot2 (local) draw_panel(..., self = self) + 23. │ └─base::lapply(...) + 24. │ └─ggplot2 (local) FUN(X[[i]], ...) + 25. │ └─self$draw_group(group, panel_params, coord, ...) + 26. └─base::.handleSimpleError(...) + 27. └─rlang (local) h(simpleError(msg, call)) + 28. └─handlers[[1L]](cnd) + 29. └─cli::cli_abort(...) + 30. └─rlang::abort(...) + Execution halted + ``` + +# gglgbtq + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/turtletopia/gglgbtq +* Source code: https://github.com/cran/gglgbtq +* Date/Publication: 2024-06-25 22:20:02 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "gglgbtq")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gglgbtq-Ex.R’ failed + The error most likely occurred in: + + > ### Name: lgbtq-scales + > ### Title: Apply gglgbtq scales + > ### Aliases: lgbtq-scales scale_color_lgbtq scale_colour_lgbtq + > ### scale_fill_lgbtq + > + > ### ** Examples + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(gglgbtq) + > + > test_check("gglgbtq") + [ FAIL 42 | WARN 0 | SKIP 0 | PASS 124 ] + + ... + ── Failure ('test-themes.R:4:5'): LGBTQ themes are of `theme` class ──────────── + `theme` inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + ── Failure ('test-themes.R:4:5'): LGBTQ themes are of `theme` class ──────────── + `theme` inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 42 | WARN 0 | SKIP 0 | PASS 124 ] + Deleting unused snapshots: + • scales/scale-color.svg + Error: Test failures + Execution halted + ``` + +# gglm + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/graysonwhite/gglm +* Source code: https://github.com/cran/gglm +* Date/Publication: 2025-04-01 19:40:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "gglm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gglm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gglm + > ### Title: gglm + > ### Aliases: gglm + > + > ### ** Examples + > + > data(mtcars) + ... + 12. └─base_ops[[.Generic]](e1, e2) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 15. └─ggplot2:::add_ggplot(e1, e2, e2name) + 16. └─ggplot2::ggplot_add(object, p, objectname) + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Failure ('test-stat_resid_hist.R:8:3'): is a ggplot ───────────────────────── + `result` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-stat_resid_leverage.R:8:3'): is a ggplot ───────────────────── + `result` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-stat_scale_location.R:8:3'): is a ggplot ───────────────────── + `result` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 8 | WARN 2 | SKIP 0 | PASS 7 ] + Error: Test failures + Execution halted + ``` + +# gglogger + +
+ +* Version: 0.1.5 +* GitHub: https://github.com/pwwang/gglogger +* Source code: https://github.com/cran/gglogger +* Date/Publication: 2024-10-25 09:10:02 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "gglogger")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 7. ├─gglogger::ggplot(.) + 8. │ ├─base::`$<-`(`*tmp*`, "logs", value = ``) + 9. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "logs", value = ``) + 10. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 11. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 12. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 13 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# ggmap + +
+ +* Version: 4.0.1 +* GitHub: https://github.com/dkahle/ggmap +* Source code: https://github.com/cran/ggmap +* Date/Publication: 2025-04-07 19:40:02 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "ggmap")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggmap’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: `aes_()` was deprecated in ggplot2 3.0.0. + See ‘/tmp/workdir/ggmap/new/ggmap.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.4Mb + sub-directories of 1Mb or more: + data 7.0Mb + ``` + +# ggmapcn + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/Rimagination/ggmapcn +* Source code: https://github.com/cran/ggmapcn +* Date/Publication: 2025-01-14 10:10:01 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "ggmapcn")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Adding_Basic_Map.Rmd’ using rmarkdown + ``` + +# ggmcmc + +
+ +* Version: 1.5.1.1 +* GitHub: https://github.com/xfim/ggmcmc +* Source code: https://github.com/cran/ggmcmc +* Date/Publication: 2021-02-10 10:50:10 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "ggmcmc")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggmcmc-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggs_Rhat + > ### Title: Dotplot of Potential Scale Reduction Factor (Rhat) + > ### Aliases: ggs_Rhat + > + > ### ** Examples + > + > data(linear) + > ggs_Rhat(ggs(s)) + Error: C stack usage 9963220 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘using_ggmcmc.Rmd’ using rmarkdown + + Quitting from using_ggmcmc.Rmd:132-134 [histogram] + Error: processing vignette 'using_ggmcmc.Rmd' failed with diagnostics: + C stack usage 9964164 is too close to the limit + --- failed re-building ‘using_ggmcmc.Rmd’ + + --- re-building ‘v70i09.Rnw’ using knitr + ... + Quitting from v70i09.Rnw:239-245 [histogram_density_part] + Error: processing vignette 'v70i09.Rnw' failed with diagnostics: + C stack usage 9965092 is too close to the limit + --- failed re-building ‘v70i09.Rnw’ + + SUMMARY: processing the following files failed: + ‘using_ggmcmc.Rmd’ ‘v70i09.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘using_ggmcmc.Rmd’ using rmarkdown + ``` + +# ggmice + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/amices/ggmice +* Source code: https://github.com/cran/ggmice +* Date/Publication: 2023-08-07 14:20:02 UTC +* Number of recursive dependencies: 120 + +Run `revdepcheck::cloud_details(, "ggmice")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggmice.Rmd’ using rmarkdown + ``` + +# GGMncv + +
+ +* Version: 2.1.1 +* GitHub: https://github.com/donaldRwilliams/GGMncv +* Source code: https://github.com/cran/GGMncv +* Date/Publication: 2021-12-15 07:40:28 UTC +* Number of recursive dependencies: 171 + +Run `revdepcheck::cloud_details(, "GGMncv")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘cpu_time.Rmd’ using rmarkdown + --- finished re-building ‘cpu_time.Rmd’ + + --- re-building ‘high_dim.Rmd’ using rmarkdown + + Quitting from high_dim.Rmd:75-78 [unnamed-chunk-4] + Error: processing vignette 'high_dim.Rmd' failed with diagnostics: + C stack usage 9962164 is too close to the limit + --- failed re-building ‘high_dim.Rmd’ + + --- re-building ‘nct_custom.Rmd’ using rmarkdown + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘Rdpack’ ‘mathjaxr’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) boot_eip.Rd:50: Escaped LaTeX specials: \& + checkRd: (-1) constrained.Rd:93: Escaped LaTeX specials: \& + ``` + +# GGMnonreg + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/GGMnonreg +* Date/Publication: 2021-04-08 11:30:06 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "GGMnonreg")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘GGMnonreg-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.graph + > ### Title: Network Plot for 'graph' Objects + > ### Aliases: plot.graph + > + > ### ** Examples + > + > # data + ... + > fit <- ggm_inference(Y, boot = FALSE) + > + > # get info for plotting + > plot(get_graph(fit)) + Warning: The `` argument of `guides()` cannot be `FALSE`. Use "none" instead as + of ggplot2 3.3.4. + ℹ The deprecated feature was likely used in the GGMnonreg package. + Please report the issue to the authors. + Error: C stack usage 9965508 is too close to the limit + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘Matrix’ ‘Rdpack’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) constrained.Rd:37: Escaped LaTeX specials: \& + ``` + +# ggmosaic + +
+ +* Version: 0.3.3 +* GitHub: https://github.com/haleyjeppson/ggmosaic +* Source code: https://github.com/cran/ggmosaic +* Date/Publication: 2021-02-23 19:50:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "ggmosaic")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggmosaic’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking dependencies in R code ... NOTE + ``` + ':::' call which should be '::': ‘scales:::censor’ + See the note in ?`:::` about the use of this operator. + Unexported object imported by a ':::' call: ‘productplots:::bound’ + See the note in ?`:::` about the use of this operator. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ggmosaic’ ... +** package ‘ggmosaic’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'is.waive' not found +Error: unable to load R code in package ‘ggmosaic’ +Execution halted +ERROR: lazy loading failed for package ‘ggmosaic’ +* removing ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/ggmosaic’ + + +``` +### CRAN + +``` +* installing *source* package ‘ggmosaic’ ... +** package ‘ggmosaic’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggmosaic) + + +``` +# ggmulti + +
+ +* Version: 1.0.7 +* GitHub: NA +* Source code: https://github.com/cran/ggmulti +* Date/Publication: 2024-04-09 09:40:05 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "ggmulti")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggmulti’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ggmulti’ ... +** package ‘ggmulti’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'new_aes' not found +Error: unable to load R code in package ‘ggmulti’ +Execution halted +ERROR: lazy loading failed for package ‘ggmulti’ +* removing ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/ggmulti’ + + +``` +### CRAN + +``` +* installing *source* package ‘ggmulti’ ... +** package ‘ggmulti’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggmulti) + + +``` +# ggnewscale + +
+ +* Version: 0.5.1 +* GitHub: https://github.com/eliocamp/ggnewscale +* Source code: https://github.com/cran/ggnewscale +* Date/Publication: 2025-02-24 09:00:02 UTC +* Number of recursive dependencies: 59 + +Run `revdepcheck::cloud_details(, "ggnewscale")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggnewscale-Ex.R’ failed + The error most likely occurred in: + + > ### Name: new_scale + > ### Title: Adds a new scale to a plot + > ### Aliases: new_scale new_scale_fill new_scale_color new_scale_colour + > + > ### ** Examples + > + > library(ggplot2) + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggnewscale) + > + > test_check("ggnewscale") + [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ] + Deleting unused snapshots: + • newscale/guides-outisde-of-scales.svg + • newscale/guides.svg + • newscale/guides2.svg + • newscale/implicit-mapping.svg + • newscale/many-layers.svg + • newscale/respects-override-aes-2.svg + Error: Test failures + Execution halted + ``` + +# ggokabeito + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/malcolmbarrett/ggokabeito +* Source code: https://github.com/cran/ggokabeito +* Date/Publication: 2021-10-18 14:40:04 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "ggokabeito")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggokabeito) + > + > test_check("ggokabeito") + [ FAIL 1 | WARN 5 | SKIP 1 | PASS 8 ] + + ... + 4. └─cli::cli_abort(msg, call = call) + 5. └─rlang::abort(...) + + [ FAIL 1 | WARN 5 | SKIP 1 | PASS 8 ] + Deleting unused snapshots: + • scales/edge-color.svg + • scales/scale-color-with-alpha-and-name.svg + • scales/scale-f-c-color-alpha-joint-name.svg + Error: Test failures + Execution halted + ``` + +# ggpackets + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/dgkf/ggpackets +* Source code: https://github.com/cran/ggpackets +* Date/Publication: 2022-10-10 23:30:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "ggpackets")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpackets-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggpacket + > ### Title: A container for lazy ggplot layers + > ### Aliases: ggpacket + > + > ### ** Examples + > + > library(ggplot2) + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_function, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort(...) + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > + > library(ggplot2) + > library(ggpackets) + + Attaching package: 'ggpackets' + + ... + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_function, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort(...) + 17. └─rlang::abort(...) + + [ FAIL 5 | WARN 1 | SKIP 0 | PASS 26 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘composing-functions.Rmd’ using rmarkdown + + Quitting from composing-functions.Rmd:57-62 [simple_ggpacket_output] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'composing-functions.Rmd' failed with diagnostics: + Can't add `ggpk_my_template()` to a object + ℹ Did you forget to add parentheses, as in `ggpk_my_template()()`? + --- failed re-building ‘composing-functions.Rmd’ + + --- re-building ‘ggpackets.Rmd’ using rmarkdown + ``` + +# ggpage + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/EmilHvitfeldt/ggpage +* Source code: https://github.com/cran/ggpage +* Date/Publication: 2019-06-13 20:30:03 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "ggpage")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘different-features.Rmd’ using rmarkdown + ``` + +# ggparallel + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/heike/ggparallel +* Source code: https://github.com/cran/ggparallel +* Date/Publication: 2024-03-09 22:00:02 UTC +* Number of recursive dependencies: 48 + +Run `revdepcheck::cloud_details(, "ggparallel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggparallel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggparallel + > ### Title: Variations of parallel coordinate plots + > ### Aliases: ggparallel + > + > ### ** Examples + > + > data(mtcars) + ... + + scale_colour_manual(values = rep(c("Orange", "Steelblue"), 14)) + > p2 <- ggparallel(vars=list("Survived", "SexSurvived", "SexClassSurvived"), + + weight="Freq", data=titanic, label = TRUE) + + + theme(legend.position="none") + + + scale_fill_manual(values = rep(c("Orange", "Steelblue"), 14)) + + + scale_colour_manual(values = rep(c("Orange", "Steelblue"), 14)) + > + > ggplot_build(p2)$data[[4]] + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(p2)@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + Error: Can't find method for `ggplot_build(S3)`. + Backtrace: + ▆ + 1. ├─ggplot2::ggplot_build(test_mtcars_plot) at test-ggparallel.R:12:3 + 2. │ └─S7::S7_dispatch() + 3. └─S7:::method_lookup_error("ggplot_build", ``) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# ggparty + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/martin-borkovec/ggparty +* Source code: https://github.com/cran/ggparty +* Date/Publication: 2019-07-18 10:54:06 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "ggparty")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggparty-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot.party + > ### Title: autoplot methods for party objects + > ### Aliases: autoplot.party autoplot.constparty autoplot.modelparty + > ### autoplot.lmtree + > + > ### ** Examples + > + ... + ▆ + 1. ├─ggplot2::autoplot(py) + 2. └─ggparty:::autoplot.party(py) + 3. └─ggparty::ggparty(object) + 4. └─ggplot2::ggplot(data = plot_data, mapping = mapping) + 5. ├─S7::S7_dispatch() + 6. └─ggplot2 (local) `method(ggplot2, class_any)`(data = ``, mapping = ``, ..., environment = ``) + 7. └─cli::cli_abort(...) + 8. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggparty) + Loading required package: ggplot2 + Loading required package: partykit + Loading required package: grid + Loading required package: libcoin + Loading required package: mvtnorm + ... + 4. └─ggparty::ggparty(py) + 5. └─ggplot2::ggplot(data = plot_data, mapping = mapping) + 6. ├─S7::S7_dispatch() + 7. └─ggplot2 (local) `method(ggplot2, class_any)`(data = ``, mapping = ``, ..., environment = ``) + 8. └─cli::cli_abort(...) + 9. └─rlang::abort(...) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 92 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggparty-graphic-partying.Rmd’ using rmarkdown + + Quitting from ggparty-graphic-partying.Rmd:41-122 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ggparty-graphic-partying.Rmd' failed with diagnostics: + `mapping` must be created with `aes()`. + ... + Error: processing vignette 'on-the-edge.Rmd' failed with diagnostics: + `mapping` must be created with `aes()`. + ✖ You've supplied an object. + --- failed re-building ‘on-the-edge.Rmd’ + + SUMMARY: processing the following files failed: + ‘ggparty-graphic-partying.Rmd’ ‘on-the-edge.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘survival’ + All declared Imports should be used. + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ggpath + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/mrcaseb/ggpath +* Source code: https://github.com/cran/ggpath +* Date/Publication: 2024-08-20 09:30:02 UTC +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "ggpath")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpath-Ex.R’ failed + The error most likely occurred in: + + > ### Name: element_path + > ### Title: Theme Elements for Image Grobs + > ### Aliases: element_path element_raster + > + > ### ** Examples + > + > library(ggplot2) + ... + 17. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 18. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 19. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 20. │ └─base::withCallingHandlers(...) + 21. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 22. ├─S7::S7_dispatch() + 23. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(...) + 24. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 25. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggpath) + > + > test_check("ggpath") + [ FAIL 2 | WARN 0 | SKIP 3 | PASS 3 ] + + ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ + ... + • geom_lines/p1.svg + • geom_lines/p2.svg + • geom_lines/p3.svg + • geom_lines/p4.svg + • geom_lines/p5.svg + • theme-elements/p1.svg + • theme-elements/p2.svg + • theme-elements/p3.svg + Error: Test failures + Execution halted + ``` + +# ggpicrust2 + +
+ +* Version: 2.1.2 +* GitHub: https://github.com/cafferychen777/ggpicrust2 +* Source code: https://github.com/cran/ggpicrust2 +* Date/Publication: 2025-04-13 06:00:02 UTC +* Number of recursive dependencies: 336 + +Run `revdepcheck::cloud_details(, "ggpicrust2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpicrust2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pathway_pca + > ### Title: Perform Principal Component Analysis (PCA) on functional pathway + > ### abundance data + > ### Aliases: pathway_pca + > + > ### ** Examples + > + ... + > # Basic PCA plot with default colors + > pca_plot <- pathway_pca(abundance_data, metadata, "group") + Warning: `aes_()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()` + ℹ The deprecated feature was likely used in the ggplotify package. + Please report the issue at + . + Error in as.aplot(.data) : input should be a 'gg' object. + Calls: pathway_pca ... insert_lr -> as.aplot -> -> insert_tb -> as.aplot + Execution halted + ``` + +# ggpie + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/showteeth/ggpie +* Source code: https://github.com/cran/ggpie +* Date/Publication: 2022-11-16 07:40:06 UTC +* Number of recursive dependencies: 57 + +Run `revdepcheck::cloud_details(, "ggpie")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpie-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggnestedpie + > ### Title: Create nested pie plot. + > ### Aliases: ggnestedpie + > + > ### ** Examples + > + > library(ggpie) + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggpie.Rmd’ using rmarkdown + ``` + +# ggplot2.utils + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/insightsengineering/ggplot2.utils +* Source code: https://github.com/cran/ggplot2.utils +* Date/Publication: 2024-06-25 21:10:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "ggplot2.utils")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggplot2.utils) + Loading required package: ggplot2 + > + > test_check("ggplot2.utils") + + Attaching package: 'dplyr' + ... + ── Failure ('test-geom_km_ticks.R:10:3'): geom_km_ticks works as expected ────── + Names of `first_layer` ('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill' + ── Failure ('test-stat_km.R:10:3'): stat_km works as expected ────────────────── + Names of `first_layer` ('time', 'survival', 'PANEL', 'group', 'x', 'y', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha') don't match 'x', 'y', 'time', 'survival', 'PANEL', 'group', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha' + ── Failure ('test-stat_km_ticks.R:10:3'): stat_km_ticks works as expected ────── + Names of `first_layer` ('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill' + + [ FAIL 4 | WARN 0 | SKIP 7 | PASS 44 ] + Error: Test failures + Execution halted + ``` + +# ggpmisc + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/aphalo/ggpmisc +* Source code: https://github.com/cran/ggpmisc +* Date/Publication: 2024-11-14 09:00:01 UTC +* Number of recursive dependencies: 113 + +Run `revdepcheck::cloud_details(, "ggpmisc")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpmisc-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggpmisc-package + > ### Title: ggpmisc: Miscellaneous Extensions to 'ggplot2' + > ### Aliases: ggpmisc ggpmisc-package + > + > ### ** Examples + > + > library(tibble) + ... + 11. │ └─base::withCallingHandlers(...) + 12. └─ggplot2:::validate_as_data_frame(model) + 13. └─ggplot2:::check_data_frame_like(data) + 14. └─cli::cli_abort("{.code dim(data)} must return an {.cls integer} of length 2.") + 15. └─rlang::abort(...) + Warning in fortify(data, ...) : Arguments in `...` must be used. + ✖ Problematic argument: + • as.numeric = FALSE + ℹ Did you misspell an argument name? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘model-based-annotations.Rmd’ using rmarkdown + ``` + +# ggPMX + +
+ +* Version: 1.2.11 +* GitHub: https://github.com/ggPMXdevelopment/ggPMX +* Source code: https://github.com/cran/ggPMX +* Date/Publication: 2023-11-30 16:10:06 UTC +* Number of recursive dependencies: 174 + +Run `revdepcheck::cloud_details(, "ggPMX")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggPMX-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pmx_config + > ### Title: This function can be used to define the pmx configuration used + > ### in plots. e.g. Monolix/Nonmem + > ### Aliases: pmx_config + > + > ### ** Examples + > + ... + + dvid = "DVID", + + cats = c("SEX"), + + conts = c("WT0", "AGE0"), + + strats = "STUD" + + ) + NO FINEGRID FILE: + we will use instead predictions.txt for individual plots + Warning: Duplicated aesthetics after name standardisation: colour + Error: C stack usage 9965284 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ggPMX-guide.Rmd’ using rmarkdown + + Quitting from ggPMX-guide.Rmd:24-37 [load_package] + Error: processing vignette 'ggPMX-guide.Rmd' failed with diagnostics: + C stack usage 9964932 is too close to the limit + --- failed re-building ‘ggPMX-guide.Rmd’ + + SUMMARY: processing the following file failed: + ‘ggPMX-guide.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘lixoftConnectors’ + ``` + +* checking installed package size ... NOTE + ``` + installed size is 9.0Mb + sub-directories of 1Mb or more: + doc 1.1Mb + help 2.4Mb + testdata 4.8Mb + ``` + +# ggpointdensity + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/LKremer/ggpointdensity +* Source code: https://github.com/cran/ggpointdensity +* Date/Publication: 2025-05-16 15:30:02 UTC +* Number of recursive dependencies: 48 + +Run `revdepcheck::cloud_details(, "ggpointdensity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpointdensity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_pointdensity + > ### Title: A cross between a scatter plot and a 2D density plot + > ### Aliases: geom_pointdensity + > + > ### ** Examples + > + > library(ggpointdensity) + ... + + scale_colour_continuous(low = "red", high = "black") + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─ggplot2::scale_colour_continuous(low = "red", high = "black") + 2. └─ggplot2:::scale_backward_compatibility(...) + 3. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 4. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Error ('test-geom_pointdensity.R:19:3'): coord_fixed adjusts density correctly (method='kde2d') ── + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(p1)@data`? + Backtrace: + ▆ + 1. ├─ggplot2::ggplot_build(p1)$data at test-geom_pointdensity.R:19:3 + 2. └─S7:::`$.S7_object`(ggplot2::ggplot_build(p1), data) at test-geom_pointdensity.R:19:3 + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 12 ] + Error: Test failures + Execution halted + ``` + +# ggpol + +
+ +* Version: 0.0.7 +* GitHub: https://github.com/erocoar/ggpol +* Source code: https://github.com/cran/ggpol +* Date/Publication: 2020-11-08 13:40:02 UTC +* Number of recursive dependencies: 52 + +Run `revdepcheck::cloud_details(, "ggpol")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpol-Ex.R’ failed + The error most likely occurred in: + + > ### Name: GeomConfmat + > ### Title: Confusion Matrix + > ### Aliases: GeomConfmat geom_confmat stat_confmat + > + > ### ** Examples + > + > x <- sample(LETTERS[seq(4)], 50, replace = TRUE) + ... + 22. │ └─ggpol (local) draw_panel(...) + 23. │ └─base::lapply(GeomText$default_aes[missing_aes], rlang::eval_tidy) + 24. │ └─rlang (local) FUN(X[[i]], ...) + 25. ├─ggplot2::from_theme(fontsize) + 26. └─base::.handleSimpleError(...) + 27. └─rlang (local) h(simpleError(msg, call)) + 28. └─handlers[[1L]](cnd) + 29. └─cli::cli_abort(...) + 30. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘dplyr’ ‘grDevices’ + All declared Imports should be used. + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# ggpolar + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/ShixiangWang/polar +* Source code: https://github.com/cran/ggpolar +* Date/Publication: 2022-10-10 10:50:02 UTC +* Number of recursive dependencies: 61 + +Run `revdepcheck::cloud_details(, "ggpolar")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpolar-Ex.R’ failed + The error most likely occurred in: + + > ### Name: polar_init + > ### Title: Init a dot plot in polar system + > ### Aliases: polar_init + > + > ### ** Examples + > + > # ------------------- + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘surv-corr-connection.Rmd’ using rmarkdown + ``` + +# ggpp + +
+ +* Version: 0.5.8-1 +* GitHub: https://github.com/aphalo/ggpp +* Source code: https://github.com/cran/ggpp +* Date/Publication: 2024-07-01 07:40:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "ggpp")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpp-Ex.R’ failed + The error most likely occurred in: + + > ### Name: annotate + > ### Title: Annotations supporting NPC + > ### Aliases: annotate + > + > ### ** Examples + > + > + ... + 1. └─ggpp::annotate("plot", x = 5.5, y = 34, label = p + theme_bw(9)) + 2. └─ggpp:::new_data_frame(position, n = n) + 3. ├─tibble::as_tibble(x) + 4. └─tibble:::as_tibble.list(x) + 5. └─tibble:::lst_to_tibble(x, .rows, .name_repair, col_lengths(x)) + 6. └─tibble:::check_valid_cols(x, call = call) + 7. └─tibble:::abort_column_scalar_type(...) + 8. └─tibble:::tibble_abort(...) + 9. └─rlang::abort(x, class, ..., call = call, parent = parent, use_cli_format = TRUE) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggpp) + Loading required package: ggplot2 + Registered S3 methods overwritten by 'ggpp': + method from + heightDetails.titleGrob ggplot2 + widthDetails.titleGrob ggplot2 + ... + * stat_fmt_tb/stat-fmt-tb-2.svg + * stat_fmt_tb/stat-fmt-tb-3.svg + * stat_fmt_tb/stat-fmt-tb-4.svg + * stat_panel_counts/stat-group-counts-x.svg + * stat_panel_counts/stat-group-counts-xy-color.svg + * stat_panel_counts/stat-group-counts-y.svg + * stat_panel_counts/stat-panel-counts-x.svg + * stat_panel_counts/stat-panel-counts-y.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘grammar-extensions.Rmd’ using rmarkdown + ``` + +# ggprism + +
+ +* Version: 1.0.6 +* GitHub: https://github.com/csdaw/ggprism +* Source code: https://github.com/cran/ggprism +* Date/Publication: 2025-05-17 10:50:02 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "ggprism")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggprism-Ex.R’ failed + The error most likely occurred in: + + > ### Name: annotation_ticks + > ### Title: Add ticks as ggplot annotation + > ### Aliases: annotation_ticks + > + > ### ** Examples + > + > ## Generally it is better to use the guide_prism_minor function. + ... + Please report the issue at . + Error in `parent %+replace% t`: + ! `%+replace%` requires two theme objects + Backtrace: + ▆ + 1. └─ggprism::theme_prism(border = TRUE) + 2. └─parent %+replace% t + 3. └─cli::cli_abort("{.code %+replace%} requires two theme objects") + 4. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("ggprism") + + } + + test-add_pvalue.R............. 0 tests + test-add_pvalue.R............. 0 tests + ... + ℹ It has been replaced by a ggproto system that can be extended. + 3: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the ggprism package. + Please report the issue at . + 4: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the ggprism package. + Please report the issue at . + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘axes.Rmd’ using rmarkdown + + Quitting from axes.Rmd:37-48 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'axes.Rmd' failed with diagnostics: + `%+replace%` requires two theme objects + ... + + Error: processing vignette 'themes.Rmd' failed with diagnostics: + `%+replace%` requires two theme objects + --- failed re-building ‘themes.Rmd’ + + SUMMARY: processing the following files failed: + ‘axes.Rmd’ ‘colours.Rmd’ ‘ggprism.Rmd’ ‘pvalues.Rmd’ ‘themes.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggpubr + +
+ +* Version: 0.6.0 +* GitHub: https://github.com/kassambara/ggpubr +* Source code: https://github.com/cran/ggpubr +* Date/Publication: 2023-02-10 16:20:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "ggpubr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpubr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gene_citation + > ### Title: Gene Citation Index + > ### Aliases: gene_citation + > + > ### ** Examples + > + > data(gene_citation) + ... + 12. ├─ggpubr (local) ``(...) + 13. │ └─ggpubr:::.hist_label_data(...) + 14. │ ├─ggplot_build(p)$data + 15. │ └─S7:::`$.S7_object`(ggplot_build(p), "data") + 16. │ └─base::stop(msg, call. = FALSE) + 17. └─base::.handleSimpleError(...) + 18. └─purrr (local) h(simpleError(msg, call)) + 19. └─cli::cli_abort(...) + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggpubr) + Loading required package: ggplot2 + > + > test_check("ggpubr") + [ FAIL 42 | WARN 6 | SKIP 0 | PASS 55 ] + + ... + ── Error ('test-stat_welch_anova_test.R:43:3'): stat_welch_anova_test works for grouped plots: grouped by legend variable ── + Error: Can't get S7 properties with `$`. Did you mean `bxp_build@data`? + Backtrace: + ▆ + 1. ├─bxp_build$data at test-stat_welch_anova_test.R:43:3 + 2. └─S7:::`$.S7_object`(bxp_build, data) at test-stat_welch_anova_test.R:43:3 + + [ FAIL 42 | WARN 6 | SKIP 0 | PASS 55 ] + Error: Test failures + Execution halted + ``` + +# ggpval + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/s6juncheng/ggpval +* Source code: https://github.com/cran/ggpval +* Date/Publication: 2022-07-11 17:10:02 UTC +* Number of recursive dependencies: 64 + +Run `revdepcheck::cloud_details(, "ggpval")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggpval-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add_pval + > ### Title: Add p-values to ggplot objects. + > ### Aliases: add_pval + > + > ### ** Examples + > + > library(ggplot2) + > library(ggpval) + > data("PlantGrowth") + > plt <- ggplot(PlantGrowth, aes(group, weight)) + + + geom_boxplot() + > add_pval(plt, pairs = list(c(1, 3)), test='wilcox.test') + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggpval) + > + > test_check("ggpval") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 1. ├─ggpval::add_pval(plt, pairs = list(c(1, 2))) at test-add_pval.R:27:1 + 2. │ ├─base::`$<-`(`*tmp*`, "data", value = ``) + 3. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "data", value = ``) + 4. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 5. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 6. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggpval.Rmd’ using knitr + + Quitting from ggpval.Rmd:59-65 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + + Error: processing vignette 'ggpval.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘ggpval.Rmd’ + + SUMMARY: processing the following file failed: + ‘ggpval.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggquickeda + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/smouksassi/ggquickeda +* Source code: https://github.com/cran/ggquickeda +* Date/Publication: 2024-01-15 10:20:02 UTC +* Number of recursive dependencies: 174 + +Run `revdepcheck::cloud_details(, "ggquickeda")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggquickeda-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggcontinuousexpdist + > ### Title: Create a continuous exposure fit plot + > ### Aliases: ggcontinuousexpdist + > + > ### ** Examples + > + > # Example 1 + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘DT’ ‘Formula’ ‘GGally’ ‘Hmisc’ ‘RPostgres’ ‘colourpicker’ ‘ggpmisc’ + ‘ggpubr’ ‘glue’ ‘gridExtra’ ‘markdown’ ‘patchwork’ ‘plotly’ + ‘quantreg’ ‘shinyFiles’ ‘shinyjqui’ ‘shinyjs’ ‘table1’ ‘zoo’ + All declared Imports should be used. + ``` + +# ggraph + +
+ +* Version: 2.2.1 +* GitHub: https://github.com/thomasp85/ggraph +* Source code: https://github.com/cran/ggraph +* Date/Publication: 2024-03-07 12:40:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "ggraph")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggraph-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autograph + > ### Title: Quickplot wrapper for networks + > ### Aliases: autograph autograph.default + > + > ### ** Examples + > + > library(tidygraph) + ... + Backtrace: + ▆ + 1. ├─ggraph::autograph(gr) + 2. └─ggraph:::autograph.default(gr) + 3. └─ggraph::geom_edge_link0(aes(colour = !!edge_colour, width = !!edge_width)) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Edges.Rmd’ using rmarkdown + + Quitting from Edges.Rmd:81-84 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Edges.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + ... + Quitting from Layouts.Rmd:34-45 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Layouts.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘Layouts.Rmd’ + + --- re-building ‘Nodes.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.0Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 3.9Mb + libs 2.8Mb + ``` + +# ggrastr + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/VPetukhov/ggrastr +* Source code: https://github.com/cran/ggrastr +* Date/Publication: 2023-06-01 06:10:02 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "ggrastr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Legacy_functions.Rmd’ using rmarkdown + ``` + +# ggredist + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/alarm-redist/ggredist +* Source code: https://github.com/cran/ggredist +* Date/Publication: 2022-11-23 11:20:02 UTC +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "ggredist")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggredist-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_district_text + > ### Title: Label Map Regions + > ### Aliases: geom_district_text geom_district_label + > ### stat_district_coordinates StatDistrictCoordinates GeomDistrictText + > ### Keywords: datasets + > + > ### ** Examples + ... + 23. │ └─coord$transform(data, panel_params) + 24. │ └─ggplot2 (local) transform(..., self = self) + 25. │ └─ggplot2:::sf_rescale01(data[[geom_column(data)]], x_range, y_range) + 26. │ └─sf::st_normalize(x, c(x_range[1], y_range[1], x_range[2], y_range[2])) + 27. └─base::.handleSimpleError(...) + 28. └─rlang (local) h(simpleError(msg, call)) + 29. └─handlers[[1L]](cnd) + 30. └─cli::cli_abort(...) + 31. └─rlang::abort(...) + Execution halted + ``` + +# ggResidpanel + +
+ +* Version: 0.3.0 +* GitHub: NA +* Source code: https://github.com/cran/ggResidpanel +* Date/Publication: 2019-05-31 23:20:04 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "ggResidpanel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggResidpanel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: resid_compare + > ### Title: Panel of Diagnostic Residual Plots Across Multiple Models. + > ### Aliases: resid_compare + > + > ### ** Examples + > + > + ... + > penguin_model <- lme4::lmer(heartrate ~ depth + duration + (1|bird), data = penguins) + > penguin_model_log2 <- lme4::lmer(log(heartrate) ~ depth + duration + I(duration^2) + + + (1|bird), data = penguins) + > + > # Compare the residuals from the model + > resid_compare(list(penguin_model, penguin_model_log2)) + Error in check_subsettable(x, allow_env = TRUE) : + S7 objects are not subsettable. + Calls: resid_compare -> plot_qq -> [[ -> [[.S7_object -> check_subsettable + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggResidpanel) + > + > test_check("ggResidpanel") + [ FAIL 10 | WARN 1 | SKIP 1 | PASS 12 ] + + ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ + ... + 3. │ └─vdiffr:::print_plot(plot, title) + 4. └─ggResidpanel::resid_panel(glmer_binomial_model, plots = "all") + 5. └─ggResidpanel:::plot_qq(...) + 6. ├─plot_data[[1]] + 7. └─S7:::`[[.S7_object`(plot_data, 1) + 8. └─S7:::check_subsettable(x, allow_env = TRUE) + + [ FAIL 10 | WARN 1 | SKIP 1 | PASS 12 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction.Rmd’ using rmarkdown + ``` + +# ggreveal + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/weverthonmachado/ggreveal +* Source code: https://github.com/cran/ggreveal +* Date/Publication: 2024-11-10 17:10:06 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "ggreveal")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggreveal-Ex.R’ failed + The error most likely occurred in: + + > ### Name: reveal_aes + > ### Title: Reveal plot by aes + > ### Aliases: reveal_aes + > + > ### ** Examples + > + > # Create full plot + ... + + group = factor(vs))) + + + geom_point(aes(shape=factor(am)), size=2) + + + geom_smooth(method="lm", + + formula = 'y ~ x', + + linewidth=1) + > p + > + > plot_list <- reveal_aes(p, "shape") + Error: Can't get S7 properties with `$`. Did you mean `p_build@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + • reveal_panels/plot2-everything-wrap.svg + • reveal_panels/plot2-only-data.svg + • reveal_panels/plot3-everything-grid.svg + • reveal_panels/plot3-everything-wrap.svg + • reveal_panels/plot3-only-data.svg + • reveal_panels/plot4-everything-grid.svg + • reveal_panels/plot4-everything-wrap.svg + • reveal_panels/plot4-only-data.svg + Error: Test failures + Execution halted + ``` + +# ggridges + +
+ +* Version: 0.5.6 +* GitHub: https://github.com/wilkelab/ggridges +* Source code: https://github.com/cran/ggridges +* Date/Publication: 2024-01-23 05:40:10 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "ggridges")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘gallery.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 6242 marked UTF-8 strings + ``` + +# ggRtsy + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/ggRtsy +* Date/Publication: 2023-09-15 19:12:05 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "ggRtsy")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggplot2) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + ... + 13. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 14. │ └─vctrs::vec_as_location(i, n, names = names, arg = arg, call = call) + 15. └─vctrs (local) ``() + 16. └─vctrs:::stop_subscript_oob(...) + 17. └─vctrs:::stop_subscript(...) + 18. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 3 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘Vignette.Rmd’ using rmarkdown + + Quitting from Vignette.Rmd:47-49 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Vignette.Rmd' failed with diagnostics: + ... + Can't extract rows past the end. + ℹ Location 1 doesn't exist. + ℹ There are only 0 rows. + --- failed re-building ‘Vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘Vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 19 marked UTF-8 strings + ``` + +# ggseas + +
+ +* Version: 0.5.4 +* GitHub: https://github.com/ellisp/ggseas +* Source code: https://github.com/cran/ggseas +* Date/Publication: 2018-06-12 13:33:33 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "ggseas")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggseas) + Loading required package: ggplot2 + > + > test_check("ggseas") + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 9 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-tsdf.R:22:4'): ggplot can draw graphic with tsdf output ────── + class(tmp2) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 9 ] + Error: Test failures + Execution halted + ``` + +# ggsegmentedtotalbar + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/ozancanozdemir/ggsegmentedtotalbar +* Source code: https://github.com/cran/ggsegmentedtotalbar +* Date/Publication: 2025-04-28 18:40:09 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "ggsegmentedtotalbar")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + > test_check("ggsegmentedtotalbar") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_file.R:12:3'): ggsegmentedtotalbar produces a plot ─────────── + `p` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# ggsem + +
+ +* Version: 0.2.4 +* GitHub: https://github.com/smin95/ggsem +* Source code: https://github.com/cran/ggsem +* Date/Publication: 2025-02-02 22:50:02 UTC +* Number of recursive dependencies: 167 + +Run `revdepcheck::cloud_details(, "ggsem")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggsem-Ex.R’ failed + The error most likely occurred in: + + > ### Name: adjust_axis_range + > ### Title: Adjust Axis Range of a Plot of a ggplot2 Plot + > ### Aliases: adjust_axis_range + > + > ### ** Examples + > + > # CSV files from ggsem app + ... + + element_order = c('lines', 'points')) # order priority: lines < points + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggsem package. + Please report the issue at . + > + > + > adjust_axis_range(p, x_range = c(-30,30), y_range= c(-30,30)) + Error: Can't get S7 properties with `$`. Did you mean `plot_build@layout`? + Execution halted + ``` + +# ggseqplot + +
+ +* Version: 0.8.6 +* GitHub: https://github.com/maraab23/ggseqplot +* Source code: https://github.com/cran/ggseqplot +* Date/Publication: 2025-05-06 22:10:02 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "ggseqplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggseqplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggseqfplot + > ### Title: Sequence Frequency Plot + > ### Aliases: ggseqfplot + > + > ### ** Examples + > + > # Use example data from TraMineR: actcal data set + ... + 12. └─base_ops[[.Generic]](e1, e2) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 15. └─ggplot2:::add_ggplot(e1, e2, e2name) + 16. └─ggplot2::ggplot_add(object, p, objectname) + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggseqplot) + Loading required package: TraMineR + + TraMineR stable version 2.2-11 (Built: 2024-12-09) + Website: http://traminer.unige.ch + Please type 'citation("TraMineR")' for citation information. + ... + Backtrace: + ▆ + 1. ├─testthat::expect_s3_class(ggseqtrplot(biofam.seq), "ggplot") at test-ggseqtrplot.R:35:3 + 2. │ └─testthat::quasi_label(enquo(object), arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. └─ggseqplot::ggseqtrplot(biofam.seq) + + [ FAIL 6 | WARN 12 | SKIP 0 | PASS 90 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggseqplot.Rmd’ using rmarkdown + ``` + +# ggside + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/jtlandis/ggside +* Source code: https://github.com/cran/ggside +* Date/Publication: 2024-03-01 09:12:37 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "ggside")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggside-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_xsidebar + > ### Title: Side bar Charts + > ### Aliases: geom_xsidebar geom_*sidebar geom_ysidebar geom_xsidecol + > ### geom_ysidecol + > + > ### ** Examples + > + ... + 18. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 19. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 20. ├─S7 (local) ``("Can't find property %s@%s", ``, "i") + 21. │ └─base::stop(msg, call. = FALSE) + 22. └─base::.handleSimpleError(...) + 23. └─rlang (local) h(simpleError(msg, call)) + 24. └─handlers[[1L]](cnd) + 25. └─cli::cli_abort(...) + 26. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggplot2) + > library(ggside) + Registered S3 method overwritten by 'ggside': + method from + +.gg ggplot2 + > + ... + • side_layers/violin.svg + • side_layers/vline.svg + • vdiff_irisScatter/collapsed-histo.svg + • vdiff_irisScatter/facetgrid-collapsed-density.svg + • vdiff_irisScatter/facetgrid-histo.svg + • vdiff_irisScatter/facetgrid-side-density.svg + • vdiff_irisScatter/stacked-side-density.svg + • vdiff_irisScatter/yside-histo.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggside_aes_mapping.Rmd’ using rmarkdown + + Quitting from ggside_aes_mapping.Rmd:42-46 [ggside_updated_aes_usage] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ggside_aes_mapping.Rmd' failed with diagnostics: + Problem while setting up layer. + ... + + Error: processing vignette 'ggside_basic_usage.Rmd' failed with diagnostics: + No method defined for class ggplot2::theme, gg, S7_object. + --- failed re-building ‘ggside_basic_usage.Rmd’ + + SUMMARY: processing the following files failed: + ‘ggside_aes_mapping.Rmd’ ‘ggside_basic_usage.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +* checking for code/documentation mismatches ... WARNING + ``` + Codoc mismatches from Rd file 'geom_xsideabline.Rd': + geom_xsidehline + Code: function(mapping = NULL, data = NULL, position = "identity", + ..., yintercept, na.rm = FALSE, show.legend = NA) + Docs: function(mapping = NULL, data = NULL, ..., yintercept, na.rm = + FALSE, show.legend = NA) + Argument names in code not in docs: + position + Mismatches in argument names (first 3): + Position: 3 Code: position Docs: ... + ... + FALSE, show.legend = NA, inherit.aes = TRUE, + orientation = "y") + Argument names in code not in docs: + quantile.colour quantile.color quantile.linetype quantile.linewidth + Mismatches in argument names (first 3): + Position: 6 Code: trim Docs: draw_quantiles + Position: 7 Code: bounds Docs: trim + Position: 8 Code: quantile.colour Docs: bounds + Mismatches in argument default values: + Name: 'draw_quantiles' Code: deprecated() Docs: NULL + ``` + +* checking R code for possible problems ... NOTE + ``` + geom_xsidelabel: no visible global function definition for ‘deprecated’ + geom_xsideviolin: no visible global function definition for + ‘deprecated’ + geom_ysidelabel: no visible global function definition for ‘deprecated’ + geom_ysideviolin: no visible global function definition for + ‘deprecated’ + Undefined global functions or variables: + deprecated + ``` + +# ggsignif + +
+ +* Version: 0.6.4 +* GitHub: https://github.com/const-ae/ggsignif +* Source code: https://github.com/cran/ggsignif +* Date/Publication: 2022-10-13 14:41:57 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "ggsignif")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggsignif) + > library(ggplot2) + > + > test_check("ggsignif") + Starting 2 test processes + [ FAIL 2 | WARN 8 | SKIP 3 | PASS 13 ] + ... + 2. └─rlang::cnd_signal(state$error) + + [ FAIL 2 | WARN 8 | SKIP 3 | PASS 13 ] + Deleting unused snapshots: + • vdiffr/basic-plot-vdiffr.svg + • vdiffr/flipping-aesthetics-works-vdiffr.svg + • vdiffr/geom-works-the-same-way-as-stat-vdiffr.svg + • vdiffr/geom-works-with-identity-vdiffr.svg + Error: Test failures + Execution halted + ``` + +# ggsmc + +
+ +* Version: 0.1.2.0 +* GitHub: https://github.com/richardgeveritt/ggsmc +* Source code: https://github.com/cran/ggsmc +* Date/Publication: 2024-07-27 17:00:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "ggsmc")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Visualising.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 175 marked UTF-8 strings + ``` + +# ggspatial + +
+ +* Version: 1.1.9 +* GitHub: https://github.com/paleolimbot/ggspatial +* Source code: https://github.com/cran/ggspatial +* Date/Publication: 2023-08-17 15:32:38 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "ggspatial")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggspatial-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fixed_plot_aspect + > ### Title: Enforce a plot aspect ratio + > ### Aliases: fixed_plot_aspect + > + > ### ** Examples + > + > library(ggplot2) + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggspatial) + > + > test_check("ggspatial") + Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE + [ FAIL 3 | WARN 1 | SKIP 22 | PASS 188 ] + + ... + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + + [ FAIL 3 | WARN 1 | SKIP 22 | PASS 188 ] + Error: Test failures + Execution halted + ``` + +# ggspectra + +
+ +* Version: 0.3.15 +* GitHub: https://github.com/aphalo/ggspectra +* Source code: https://github.com/cran/ggspectra +* Date/Publication: 2025-01-08 14:50:02 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "ggspectra")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggspectra-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot.generic_spct + > ### Title: Plot generic spectral data. + > ### Aliases: autoplot.generic_spct autoplot.generic_mspct + > ### Keywords: internal + > + > ### ** Examples + > + ... + 9. │ └─ggplot2 (local) labels(..., self = self) + 10. └─self$resolve_label(self$panel_scales_x[[1]], labels) + 11. └─ggplot2 (local) resolve_label(..., self = self) + 12. └─scale$make_title(prim_guide, prim_scale, prim_label) + 13. └─ggplot2 (local) make_title(..., self = self) + 14. └─ggplot2:::allow_lambda(scale_title) + 15. └─rlang::as_function(x) + 16. └─rlang:::abort_coercion(...) + 17. └─rlang::abort(msg, call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘userguide-0-r4p-introduction.Rmd’ using rmarkdown + --- finished re-building ‘userguide-0-r4p-introduction.Rmd’ + + --- re-building ‘userguide1-grammar.Rmd’ using rmarkdown + + Quitting from userguide1-grammar.Rmd:194-196 [unnamed-chunk-6] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'userguide1-grammar.Rmd' failed with diagnostics: + Problem while setting up geom. + ℹ Error occurred in the 1st layer. + Caused by error in `compute_geom_1()`: + ! `geom_line()` requires the following missing aesthetics: x and y. + --- failed re-building ‘userguide1-grammar.Rmd’ + + --- re-building ‘userguide2-autoplot-methods.Rmd’ using rmarkdown + ``` + +# ggstackplot + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/kopflab/ggstackplot +* Source code: https://github.com/cran/ggstackplot +* Date/Publication: 2025-01-31 09:00:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "ggstackplot")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggstackplot.Rmd’ using rmarkdown + ``` + +# ggstats + +
+ +* Version: 0.9.0 +* GitHub: https://github.com/larmarange/ggstats +* Source code: https://github.com/cran/ggstats +* Date/Publication: 2025-03-10 11:20:02 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "ggstats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggstats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggcoef_model + > ### Title: Plot model coefficients + > ### Aliases: ggcoef_model ggcoef_table ggcoef_dodged ggcoef_faceted + > ### ggcoef_compare ggcoef_plot + > + > ### ** Examples + > + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘geom_diverging.Rmd’ using rmarkdown + + Quitting from geom_diverging.Rmd:33-50 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'geom_diverging.Rmd' failed with diagnostics: + Can't add `p_diverging` to a object. + --- failed re-building ‘geom_diverging.Rmd’ + + --- re-building ‘ggcoef_model.Rmd’ using rmarkdown + ``` + +# ggstatsplot + +
+ +* Version: 0.13.1 +* GitHub: https://github.com/IndrajeetPatil/ggstatsplot +* Source code: https://github.com/cran/ggstatsplot +* Date/Publication: 2025-05-09 23:40:02 UTC +* Number of recursive dependencies: 173 + +Run `revdepcheck::cloud_details(, "ggstatsplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggstatsplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: combine_plots + > ### Title: Combining and arranging multiple plots in a grid + > ### Aliases: combine_plots + > + > ### ** Examples + > + > library(ggplot2) + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # graphics engine changed in this version, and so snapshots generated on + > # previous R version won't work + > if (getRversion() >= "4.4.0") { + + library(testthat) + + suppressPackageStartupMessages(library(ggstatsplot)) + + test_check("ggstatsplot") + + } + ... + • pairwise-ggsignif/within-non-parametric-all.svg + • pairwise-ggsignif/within-non-parametric-only-non-significant.svg + • pairwise-ggsignif/within-non-parametric-only-significant.svg + • pairwise-ggsignif/within-parametric-all.svg + • pairwise-ggsignif/within-parametric-only-significant.svg + • pairwise-ggsignif/within-robust-all.svg + • pairwise-ggsignif/within-robust-only-non-significant.svg + • pairwise-ggsignif/within-robust-only-significant.svg + Error: Test failures + Execution halted + ``` + +# ggstream + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/ggstream +* Date/Publication: 2021-05-06 07:50:03 UTC +* Number of recursive dependencies: 52 + +Run `revdepcheck::cloud_details(, "ggstream")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggstream) + > + > test_check("ggstream") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-geom_stream.R:4:3'): geom_stream ───────────────────────────── + class(...) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘tidyr’ + All declared Imports should be used. + ``` + +# ggswissmaps + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/gibonet/ggswissmaps +* Source code: https://github.com/cran/ggswissmaps +* Date/Publication: 2016-10-29 10:48:24 +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "ggswissmaps")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggswissmaps’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + See ‘/tmp/workdir/ggswissmaps/new/ggswissmaps.Rcheck/00install.out’ for details. + ``` + +* checking whether the namespace can be loaded with stated dependencies ... NOTE + ``` + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the ggswissmaps package. + Please report the issue to the authors. + + A namespace must be able to be loaded with just the base namespace + loaded: otherwise if the namespace gets loaded by a saved object, the + session will be unable to start. + + Probably some imports need to be declared in the NAMESPACE file. + ``` + +# ggtangle + +
+ +* Version: 0.0.6 +* GitHub: NA +* Source code: https://github.com/cran/ggtangle +* Date/Publication: 2024-12-18 14:30:06 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "ggtangle")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggtangle-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_edge + > ### Title: layer to draw edges of a network + > ### Aliases: geom_edge + > + > ### ** Examples + > + > flow_info <- data.frame(from = LETTERS[c(1,2,3,3,4,5,6)], + ... + 7. │ ├─base::tryCatch(...) + 8. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 9. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 10. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 11. │ └─base::withCallingHandlers(...) + 12. └─ggplot2:::validate_as_data_frame(model) + 13. └─ggplot2:::check_data_frame_like(data) + 14. └─cli::cli_abort("{.code dim(data)} must return an {.cls integer} of length 2.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ggtangle.Rmd’ using rmarkdown + + Quitting from ggtangle.Rmd:41-57 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ggtangle.Rmd' failed with diagnostics: + ... + a valid -like object coercible by `as.data.frame()`. + Caused by error in `check_data_frame_like()`: + ! `dim(data)` must return an of length 2. + --- failed re-building ‘ggtangle.Rmd’ + + SUMMARY: processing the following file failed: + ‘ggtangle.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggtea + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/ggtea +* Date/Publication: 2021-11-09 18:40:02 UTC +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "ggtea")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggtea-Ex.R’ failed + The error most likely occurred in: + + > ### Name: apricot_c + > ### Title: Apricot continuous quick-apply + > ### Aliases: apricot_c + > + > ### ** Examples + > + > apricot_c() + Error: object properties are invalid: + - @margin must be or , not S3 + Execution halted + ``` + +# ggtern + +
+ +* Version: 3.5.0 +* GitHub: NA +* Source code: https://github.com/cran/ggtern +* Date/Publication: 2024-03-24 21:50:02 UTC +* Number of recursive dependencies: 40 + +Run `revdepcheck::cloud_details(, "ggtern")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggtern’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘chemometrics’ + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘sp’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ggtern’ ... +** package ‘ggtern’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** demo +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'update_guides' not found +Error: unable to load R code in package ‘ggtern’ +Execution halted +ERROR: lazy loading failed for package ‘ggtern’ +* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’ + + +``` +### CRAN + +``` +* installing *source* package ‘ggtern’ ... +** package ‘ggtern’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** demo +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggtern) + + +``` +# ggtext + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/wilkelab/ggtext +* Source code: https://github.com/cran/ggtext +* Date/Publication: 2022-09-16 11:36:07 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "ggtext")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggtext-Ex.R’ failed + The error most likely occurred in: + + > ### Name: element_textbox + > ### Title: Theme element that enables markdown text in a box. + > ### Aliases: element_textbox element_textbox_simple + > + > ### ** Examples + > + > library(ggplot2) + ... + 11. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 12. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 13. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 14. │ └─base::withCallingHandlers(...) + 15. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 18. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggplot2) + > library(ggtext) + > + > test_check("ggtext") + [ FAIL 3 | WARN 1 | SKIP 2 | PASS 0 ] + + ... + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + ── Error ('test-element-textbox.R:21:3'): visual tests ───────────────────────── + Error in `plot_theme(plot)`: Can't merge the `plot.subtitle` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + + [ FAIL 3 | WARN 1 | SKIP 2 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘plotting_text.Rmd’ using rmarkdown + ``` + +# ggthemes + +
+ +* Version: 5.1.0 +* GitHub: https://github.com/jrnold/ggthemes +* Source code: https://github.com/cran/ggthemes +* Date/Publication: 2024-02-10 00:30:02 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "ggthemes")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + ── Failure ('test-tufte.R:8:3'): theme_tufte works with ticks = FALSE ────────── + `thm` inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + ── Failure ('test-wsj_pal.R:2:3'): theme_wsj works ───────────────────────────── + theme_wsj() inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + ── Failure ('test-wsj_pal.R:13:3'): theme_wsj works ──────────────────────────── + theme_wsj() inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 32 | WARN 63 | SKIP 3 | PASS 240 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 138 marked UTF-8 strings + ``` + +# ggthemeUL + +
+ +* Version: 0.1.3 +* GitHub: NA +* Source code: https://github.com/cran/ggthemeUL +* Date/Publication: 2023-12-07 11:50:02 UTC +* Number of recursive dependencies: 47 + +Run `revdepcheck::cloud_details(, "ggthemeUL")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggthemeUL.Rmd’ using rmarkdown + + Quitting from ggthemeUL.Rmd:146-162 [unnamed-chunk-7] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `as.vector()`: + ! cannot coerce type 'object' to vector of type 'character' + --- + Backtrace: + ... + + Error: processing vignette 'ggthemeUL.Rmd' failed with diagnostics: + cannot coerce type 'object' to vector of type 'character' + --- failed re-building ‘ggthemeUL.Rmd’ + + SUMMARY: processing the following file failed: + ‘ggthemeUL.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggtibble + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/ggtibble +* Date/Publication: 2024-06-19 12:50:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "ggtibble")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggtibble-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gglist + > ### Title: Generate a list of ggplots from a list of data.frames + > ### Aliases: gglist + > + > ### ** Examples + > + > mydata <- + ... + > gglist(mydata, ggplot2::aes(x = x, y = y)) + + + ggplot2::geom_point() + Error in `new_gglist()`: + ! the contents of 'x' must be NULL, a 'gg' (ggplot), or a 'labels' object + Backtrace: + ▆ + 1. └─ggtibble::gglist(mydata, ggplot2::aes(x = x, y = y)) + 2. └─ggtibble::new_gglist(...) + 3. └─rlang::abort("the contents of 'x' must be NULL, a 'gg' (ggplot), or a 'labels' object") + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + 1. ├─testthat::expect_s3_class(...) at test-ggtibble.R:171:3 + 2. │ └─testthat::quasi_label(enquo(object), arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. └─ggtibble::new_ggtibble(...) + 5. └─ggtibble::new_gglist(x$figure) + 6. └─rlang::abort("the contents of 'x' must be NULL, a 'gg' (ggplot), or a 'labels' object") + + [ FAIL 11 | WARN 0 | SKIP 0 | PASS 6 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘v01-introduction.Rmd’ using rmarkdown + + Quitting from v01-introduction.Rmd:60-90 [typical] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'v01-introduction.Rmd' failed with diagnostics: + the contents of 'x' must be NULL, a 'gg' (ggplot), or a 'labels' object + --- failed re-building ‘v01-introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘v01-introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ggTimeSeries + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/thecomeonman/ggTimeSeries +* Source code: https://github.com/cran/ggTimeSeries +* Date/Publication: 2022-01-23 16:22:42 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "ggTimeSeries")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggTimeSeries-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggplot_calendar_heatmap + > ### Title: Plots a calendar heatmap + > ### Aliases: ggplot_calendar_heatmap + > + > ### ** Examples + > + > { + ... + . + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─ggplot2::scale_colour_continuous(low = "red", high = "green") + 2. └─ggplot2:::scale_backward_compatibility(...) + 3. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 4. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggTimeSeries.Rmd’ using rmarkdown + ``` + +# ggVennDiagram + +
+ +* Version: 1.5.2 +* GitHub: https://github.com/gaospecial/ggVennDiagram +* Source code: https://github.com/cran/ggVennDiagram +* Date/Publication: 2024-02-20 08:10:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "ggVennDiagram")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggVennDiagram-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_shapes + > ### Title: plot all shapes provided by internal dataset + > ### Aliases: plot_shapes + > + > ### ** Examples + > + > plot_shapes() + ... + 12. └─base_ops[[.Generic]](e1, e2) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 15. └─ggplot2:::add_ggplot(e1, e2, e2name) + 16. └─ggplot2::ggplot_add(object, p, objectname) + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggVennDiagram) + > + > test_check("ggVennDiagram") + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 8 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 2. ├─aplot::insert_left(...) + 3. │ └─aplot:::insert_lr(...) + 4. │ └─aplot:::as.aplot(.data) + 5. └─aplot::insert_top(p_main, p_top, height = relative_height) + 6. └─aplot:::insert_tb(...) + 7. └─aplot:::as.aplot(.data) + + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 8 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘VennCalculator.Rmd’ using rmarkdown + --- finished re-building ‘VennCalculator.Rmd’ + + --- re-building ‘fully-customed.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.1Mb + sub-directories of 1Mb or more: + doc 9.5Mb + help 1.1Mb + ``` + +# ggvfields + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/dusty-turner/ggvfields +* Source code: https://github.com/cran/ggvfields +* Date/Publication: 2025-03-15 17:10:05 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "ggvfields")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Error ('test-geom_vector_smooth.R:148:3'): geom_vector_smooth issues warning and switches pi_type when eval_points is NULL ── + Error: Can't get S7 properties with `$`. Did you mean `pb@data`? + Backtrace: + ▆ + 1. ├─pb$data at test-geom_vector_smooth.R:148:3 + 2. └─S7:::`$.S7_object`(pb, data) at test-geom_vector_smooth.R:148:3 + + [ FAIL 33 | WARN 0 | SKIP 0 | PASS 27 ] + Error: Test failures + Execution halted + ``` + +# ggview + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/idmn/ggview +* Source code: https://github.com/cran/ggview +* Date/Publication: 2024-10-02 17:00:10 UTC +* Number of recursive dependencies: 45 + +Run `revdepcheck::cloud_details(, "ggview")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggview-Ex.R’ failed + The error most likely occurred in: + + > ### Name: save_ggplot + > ### Title: Save a ggplot + > ### Aliases: save_ggplot + > + > ### ** Examples + > + > library(ggplot2) + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 1 ] + Error: Test failures + Execution halted + ``` + +# ghibli + +
+ +* Version: 0.3.4 +* GitHub: https://github.com/ewenme/ghibli +* Source code: https://github.com/cran/ghibli +* Date/Publication: 2024-03-18 22:00:02 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "ghibli")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ghibli) + > + > test_check("ghibli") + [ FAIL 6 | WARN 8 | SKIP 2 | PASS 2 ] + + ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ + ... + ── Failure ('test-scales.R:47:3'): scale_fill_ghibli_d returns a ggplot ──────── + base_fill_plot + scale_fill_ghibli_d(name = "PonyoMedium") inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-scales.R:51:3'): scale_fill_ghibli_d takes palette args ────── + base_fill_plot + scale_fill_ghibli_d(name = "PonyoMedium") inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-scales.R:54:3'): scale_fill_ghibli_d takes palette args ────── + base_fill_plot + scale_fill_ghibli_d(name = "PonyoMedium", direction = -1) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 6 | WARN 8 | SKIP 2 | PASS 2 ] + Error: Test failures + Execution halted + ``` + +# ghypernet + +
+ +* Version: 1.1.0 +* GitHub: NA +* Source code: https://github.com/cran/ghypernet +* Date/Publication: 2021-10-15 13:30:05 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "ghypernet")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Significantlinks.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘methods’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 11 marked UTF-8 strings + ``` + +# GimmeMyPlot + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/GimmeMyPlot +* Date/Publication: 2023-10-18 16:10:02 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "GimmeMyPlot")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 9. │ │ └─base::mget(args, envir = env) + 10. │ └─ggplot2::element_text(...) + 11. │ └─S7::new_object(...) + 12. │ └─S7::validate(object, recursive = !parent_validated) + 13. └─base::suppressWarnings(.) + 14. └─base::withCallingHandlers(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Tutorial.Rmd’ using rmarkdown + + Quitting from Tutorial.Rmd:23-57 [violin] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! object properties are invalid: + - @colour must be , , or , not S3 + --- + ... + Error: processing vignette 'Tutorial.Rmd' failed with diagnostics: + object properties are invalid: + - @colour must be , , or , not S3 + --- failed re-building ‘Tutorial.Rmd’ + + SUMMARY: processing the following file failed: + ‘Tutorial.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# gosset + +
+ +* Version: 1.4 +* GitHub: https://github.com/agrdatasci/gosset +* Source code: https://github.com/cran/gosset +* Date/Publication: 2024-12-05 14:00:02 UTC +* Number of recursive dependencies: 149 + +Run `revdepcheck::cloud_details(, "gosset")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gosset-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compare + > ### Title: Compare agreement between two methods + > ### Aliases: compare compare.default compare.PlackettLuce + > + > ### ** Examples + > + > set.seed(1) + > x = runif(10, -1, 2) + > + > set.seed(2) + > y = runif(10, -1, 2) + > + > compare(x, y) + Error: object properties are invalid: + - @face must be or , not + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘vignette-1-trait-prioritization-and-crop-performance.Rmd’ using rmarkdown_notangle + ``` + +# GOxploreR + +
+ +* Version: 1.2.8 +* GitHub: NA +* Source code: https://github.com/cran/GOxploreR +* Date/Publication: 2025-04-05 14:20:11 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "GOxploreR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘GOxploreR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: visRDAGBP + > ### Title: Species-specific biological process GO-DAG + > ### Aliases: visRDAGBP + > + > ### ** Examples + > + > # Reduced GO-DAG for Human + ... + Backtrace: + ▆ + 1. └─GOxploreR::visRDAGBP(organism = "Homo sapiens") + 2. └─GOxploreR:::drawGraph(...) + 3. └─ggraph::geom_edge_fan(...) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘GOxploreR.Rmd’ using rmarkdown + + Quitting from GOxploreR.Rmd:354-366 [unnamed-chunk-16] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! error in evaluating the argument 'x' in selecting a method for function 'head': `mapping` must be created by `aes()`. + --- + Backtrace: + ... + + Error: processing vignette 'GOxploreR.Rmd' failed with diagnostics: + error in evaluating the argument 'x' in selecting a method for function 'head': `mapping` must be created by `aes()`. + --- failed re-building ‘GOxploreR.Rmd’ + + SUMMARY: processing the following file failed: + ‘GOxploreR.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.1Mb + sub-directories of 1Mb or more: + R 8.5Mb + ``` + +# gprofiler2 + +
+ +* Version: 0.2.3 +* GitHub: NA +* Source code: https://github.com/cran/gprofiler2 +* Date/Publication: 2024-02-23 21:50:02 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "gprofiler2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gprofiler2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gostplot + > ### Title: Manhattan plot of functional enrichment results. + > ### Aliases: gostplot + > + > ### ** Examples + > + > gostres <- gost(c("Klf4", "Pax5", "Sox2", "Nanog"), organism = "mmusculus") + ... + In addition: Warning messages: + 1: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the gprofiler2 package. + Please report the issue at . + 2: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the gprofiler2 package. + Please report the issue at . + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘gprofiler2.Rmd’ using rmarkdown + + Quitting from gprofiler2.Rmd:245-247 [unnamed-chunk-14] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + + Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘gprofiler2.Rmd’ + + SUMMARY: processing the following file failed: + ‘gprofiler2.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# grafify + +
+ +* Version: 5.0.0.1 +* GitHub: https://github.com/ashenoy-cmbi/grafify +* Source code: https://github.com/cran/grafify +* Date/Publication: 2025-03-10 22:50:02 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "grafify")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(grafify) + Loading required package: ggplot2 + > library(rlang) + + Attaching package: 'rlang' + + ... + ── Failure ('test-plot_qqline.R:28:3'): Check histogram plots ────────────────── + `db2` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-plot_qqline.R:45:3'): Check density plots ──────────────────── + `db2` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-scale_colour_grafify.R:14:3'): Check colour and fill scales ── + `db1` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 15 | WARN 0 | SKIP 0 | PASS 170 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.6Mb + sub-directories of 1Mb or more: + help 5.3Mb + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘gratia’ + ``` + +# graphPAF + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/johnfergusonNUIG/graphPAF +* Source code: https://github.com/cran/graphPAF +* Date/Publication: 2023-12-21 00:50:06 UTC +* Number of recursive dependencies: 48 + +Run `revdepcheck::cloud_details(, "graphPAF")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘graphPAF-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.SAF_summary + > ### Title: Produce plots of sequential and average PAF + > ### Aliases: plot.SAF_summary + > + > ### ** Examples + > + > library(splines) + ... + + riskfactor_vec = c("urban.rural","occupational.exposure"),ci=FALSE) + > plot(out) + Warning in fortify(data, ...) : Arguments in `...` must be used. + ✖ Problematic argument: + • size = point.size + ℹ Did you misspell an argument name? + Error: Can't find method for generic `+(e1, e2)`: + - e1: + - e2: + Execution halted + ``` + +# gratia + +
+ +* Version: 0.10.0 +* GitHub: https://github.com/gavinsimpson/gratia +* Source code: https://github.com/cran/gratia +* Date/Publication: 2024-12-19 19:10:02 UTC +* Number of recursive dependencies: 154 + +Run `revdepcheck::cloud_details(, "gratia")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gratia-Ex.R’ failed + The error most likely occurred in: + + > ### Name: appraise + > ### Title: Model diagnostic plots + > ### Aliases: appraise appraise.gam appraise.lm + > + > ### ** Examples + > + > load_mgcv() + ... + 10. \-base_ops[[.Generic]](e1, e2) + 11. +-S7::S7_dispatch() + 12. \-ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. \-ggplot2:::add_ggplot(e1, e2, e2name) + 14. \-ggplot2::ggplot_add(object, p, objectname) + 15. +-S7::S7_dispatch() + 16. \-ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. \-cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. \-rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > ## Test `gratia` using the `testthat` package + > + > ## Setup + > library("testthat") + > library("gratia") + > + > ## Runs the tests in tests/testthat + ... + • penalty/draw-penalty-single-smooths-user-continuous-fill.svg + • rootograms/draw-gaussian-rootogram.svg + • rootograms/draw-neg-bin-rootogram.svg + • rootograms/draw-neg-bin-sqrt-rootogram.svg + • rootograms/draw-neg-bin-standing-rootogram.svg + • rootograms/draw-neg-bin-suspended-rootogram.svg + • soap-films/draw-gam-so-soap-film.svg + • soap-films/draw-smooth-estimates-so-soap-film.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘data-slices.Rmd’ using rmarkdown + ``` + +# Greymodels + +
+ +* Version: 2.0.1 +* GitHub: https://github.com/havishaJ/Greymodels +* Source code: https://github.com/cran/Greymodels +* Date/Publication: 2022-12-05 12:42:35 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "Greymodels")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Greymodels-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Plots + > ### Title: plots + > ### Aliases: plots plotrm plotsmv1 plotsmv2 plotsigndgm plots_mdbgm12 + > + > ### ** Examples + > + > # Plots - EPGM (1, 1) model + ... + + geom_point(data = set4, aes(x = CI, y = y), shape = 23, color = "black") + + + geom_line(data = xy1, aes(x = x, y = y,color = "Raw Data")) + + + geom_line(data = xy2, aes(x = x, y = y,color = "Fitted&Forecasts")) + + + geom_line(data = set3, aes(x = CI, y = y,color = "LowerBound"), linetype=2) + + + geom_line(data = set4, aes(x = CI, y = y,color = "UpperBound"), linetype=2) + + + scale_color_manual(name = "Label",values = colors) + > r <- ggplotly(p) + Error in pm[[2]] : subscript out of bounds + Calls: ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# GrowthCurveME + +
+ +* Version: 0.1.11 +* GitHub: https://github.com/cancermodels-org/GrowthCurveME +* Source code: https://github.com/cran/GrowthCurveME +* Date/Publication: 2025-04-11 08:20:18 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "GrowthCurveME")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Failure ('test-growth_vs_time_plot.R:59:3'): Returns a plot - least-squares model - plot type 2 ── + `plot` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-growth_vs_time_plot.R:69:3'): Returns a plot - least-squares model - plot type 3 ── + `plot` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-growth_vs_time_plot.R:79:3'): Returns a plot - least-squares model - plot type 4 ── + `plot` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 14 | WARN 0 | SKIP 0 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +# GRShiny + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/sooyongl/GRShiny +* Source code: https://github.com/cran/GRShiny +* Date/Publication: 2023-05-03 18:40:06 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "GRShiny")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(GRShiny) + > + > test_check("GRShiny") + + F1 =~ NA*y1+l1*y1+l2*y2 + + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-gendata.r:73:3'): Plotting functions work ──────────────────── + `res` is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 6 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) runGRM.Rd:24: Lost braces + 24 | from \code{\link{mirt}} or code{\linkS4class{lavaan}} from from + | ^ + ``` + +# grwat + +
+ +* Version: 0.0.4 +* GitHub: https://github.com/tsamsonov/grwat +* Source code: https://github.com/cran/grwat +* Date/Publication: 2023-10-27 11:40:12 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "grwat")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > suppressPackageStartupMessages(library(grwat)) + > + > test_check("grwat") + [ FAIL 7 | WARN 4 | SKIP 1 | PASS 165 ] + + ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ + ... + ── Failure ('test-gr_plot_matrix.R:17:3'): Matrix ggplot has the correct content ── + `plt` has type 'object', not 'list'. + ── Failure ('test-gr_plot_ridge.R:9:3'): Ridgeline plot has the correct content ── + `plt` has type 'object', not 'list'. + ── Failure ('test-gr_plot_tests.R:10:3'): Tests plot has the correct content ─── + `plt` has type 'object', not 'list'. + + [ FAIL 7 | WARN 4 | SKIP 1 | PASS 165 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.3Mb + sub-directories of 1Mb or more: + doc 1.6Mb + libs 2.6Mb + ``` + +# gsaot + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/pietrocipolla/gsaot +* Source code: https://github.com/cran/gsaot +* Date/Publication: 2025-04-21 09:20:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "gsaot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘gsaot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_separations + > ### Title: Plot Optimal Transport separation measures + > ### Aliases: plot_separations + > + > ### ** Examples + > + > N <- 1000 + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘gaussian-model-sensitivity.Rmd’ using rmarkdown + + Quitting from gaussian-model-sensitivity.Rmd:66-85 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'gaussian-model-sensitivity.Rmd' failed with diagnostics: + Can't add `plot_spacer()` to a object. + --- failed re-building ‘gaussian-model-sensitivity.Rmd’ + + SUMMARY: processing the following file failed: + ‘gaussian-model-sensitivity.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.7Mb + sub-directories of 1Mb or more: + help 1.8Mb + libs 7.5Mb + ``` + +# GseaVis + +
+ +* Version: 0.0.5 +* GitHub: https://github.com/junjunlab/GseaVis +* Source code: https://github.com/cran/GseaVis +* Date/Publication: 2022-12-20 19:40:07 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "GseaVis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘GseaVis-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gseaNb + > ### Title: gseaNb + > ### Aliases: gseaNb + > + > ### ** Examples + > + > # load data + ... + 12. └─base_ops[[.Generic]](e1, e2) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 15. └─ggplot2:::add_ggplot(e1, e2, e2name) + 16. └─ggplot2::ggplot_add(object, p, objectname) + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + Execution halted + ``` + +# guideR + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/larmarange/guideR +* Source code: https://github.com/cran/guideR +* Date/Publication: 2025-04-22 12:00:02 UTC +* Number of recursive dependencies: 155 + +Run `revdepcheck::cloud_details(, "guideR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘guideR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_inertia_from_tree + > ### Title: Plot inertia, absolute loss and relative loss from a + > ### classification tree + > ### Aliases: plot_inertia_from_tree get_inertia_from_tree + > ### Keywords: tree + > + > ### ** Examples + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plot_inertia_from_tree.R:6:3'): plot_inertia_from_tree() does not produce an error ── + Expected `plot_inertia_from_tree(hc)` to run without any errors. + i Actually got a with text: + Can't add `x[[i]]` to a object. + + [ FAIL 1 | WARN 34 | SKIP 4 | PASS 60 ] + Error: Test failures + Execution halted + ``` + +# GWlasso + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/nibortolum/GWlasso +* Source code: https://github.com/cran/GWlasso +* Date/Publication: 2024-11-22 09:30:07 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "GWlasso")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘GWlasso-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.gwlfit + > ### Title: Plot method for gwlfit object + > ### Aliases: plot.gwlfit + > + > ### ** Examples + > + > + ... + 18. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 19. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 20. ├─S7 (local) ``("Can't find property %s@%s", ``, "i") + 21. │ └─base::stop(msg, call. = FALSE) + 22. └─base::.handleSimpleError(...) + 23. └─rlang (local) h(simpleError(msg, call)) + 24. └─handlers[[1L]](cnd) + 25. └─cli::cli_abort(...) + 26. └─rlang::abort(...) + Execution halted + ``` + +# HaDeX + +
+ +* Version: 1.2.2 +* GitHub: NA +* Source code: https://github.com/cran/HaDeX +* Date/Publication: 2021-08-12 14:00:02 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "HaDeX")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(HaDeX) + > + > test_check("HaDeX") + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 33 ] + + ... + ── Failure ('test_comparison_plot.R:17:1'): class is right ───────────────────── + comparison_plot(...) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_plot_coverage.R:9:1'): class is right ──────────────────────── + plot_coverage(dat, chosen_state = "CD160_HVEM") inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_woods_plot.R:17:1'): class is right ────────────────────────── + woods_plot(calc_dat = calc_dat, theoretical = TRUE, relative = FALSE) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 33 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.2Mb + sub-directories of 1Mb or more: + HaDeX 4.1Mb + doc 4.0Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘DT’ ‘gsubfn’ ‘stringr’ + All declared Imports should be used. + ``` + +# hahmmr + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/hahmmr +* Date/Publication: 2023-10-25 18:00:10 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "hahmmr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘hahmmr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_bulks + > ### Title: Plot a group of pseudobulk HMM profiles + > ### Aliases: plot_bulks + > + > ### ** Examples + > + > p = plot_bulks(bulk_example) + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.2Mb + sub-directories of 1Mb or more: + data 6.5Mb + libs 4.4Mb + ``` + +# HaploCatcher + +
+ +* Version: 1.0.4 +* GitHub: NA +* Source code: https://github.com/cran/HaploCatcher +* Date/Publication: 2023-04-21 23:32:39 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "HaploCatcher")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘An_Intro_to_HaploCatcher.Rmd’ using rmarkdown + + Quitting from An_Intro_to_HaploCatcher.Rmd:241-253 [example_models_1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'An_Intro_to_HaploCatcher.Rmd' failed with diagnostics: + Can't add `c` to a object. + --- failed re-building ‘An_Intro_to_HaploCatcher.Rmd’ + + SUMMARY: processing the following file failed: + ‘An_Intro_to_HaploCatcher.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# harmony + +
+ +* Version: 1.2.3 +* GitHub: https://github.com/immunogenomics/harmony +* Source code: https://github.com/cran/harmony +* Date/Publication: 2024-11-27 23:50:02 UTC +* Number of recursive dependencies: 211 + +Run `revdepcheck::cloud_details(, "harmony")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Seurat.Rmd’ using rmarkdown + Calculating gene variances + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + Calculating feature variances of standardized and clipped values + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + ... + **************************************************| + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 14.8Mb + sub-directories of 1Mb or more: + data 5.0Mb + doc 2.5Mb + libs 7.1Mb + ``` + +# hatchR + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/bmait101/hatchR +* Source code: https://github.com/cran/hatchR +* Date/Publication: 2025-03-05 15:40:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "hatchR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘hatchR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_phenology + > ### Title: Visualize fish phenology + > ### Aliases: plot_phenology + > + > ### ** Examples + > + > library(hatchR) + ... + 18. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 19. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 20. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 21. │ └─base::withCallingHandlers(...) + 22. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 23. ├─S7::S7_dispatch() + 24. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 25. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 26. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + { + S7::new_object(elements, complete = complete, validate = validate) + }, class = c("S7_class", "S7_object")), complete = FALSE, validate = TRUE), + plot = , ...)`: Can't merge the `plot.subtitle` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 31 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Advanced_plotting.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.7Mb + sub-directories of 1Mb or more: + data 6.5Mb + doc 1.9Mb + ``` + +# healthyR + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/spsanderson/healthyR +* Source code: https://github.com/cran/healthyR +* Date/Publication: 2024-07-01 13:20:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "healthyR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘getting-started.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.6Mb + sub-directories of 1Mb or more: + data 2.5Mb + doc 3.7Mb + ``` + +# healthyR.ai + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/spsanderson/healthyR.ai +* Source code: https://github.com/cran/healthyR.ai +* Date/Publication: 2025-04-24 11:40:17 UTC +* Number of recursive dependencies: 203 + +Run `revdepcheck::cloud_details(, "healthyR.ai")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘healthyR.ai-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pca_your_recipe + > ### Title: Perform PCA + > ### Aliases: pca_your_recipe + > + > ### ** Examples + > + > suppressPackageStartupMessages(library(timetk)) + ... + + step_rm(matches("(iso$)|(xts$)|(hour)|(min)|(sec)|(am.pm)")) + > + > output_list <- pca_your_recipe(rec_obj, .data = data_tbl) + Warning: ! The following columns have zero variance so scaling cannot be used: + date_col_day, date_col_mday, date_col_mweek, and date_col_mday7. + ℹ Consider using ?step_zv (`?recipes::step_zv()`) to remove those columns + before normalizing. + Error in pm[[2]] : subscript out of bounds + Calls: pca_your_recipe -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘auto-kmeans.Rmd’ using rmarkdown + --- finished re-building ‘auto-kmeans.Rmd’ + + --- re-building ‘getting-started.Rmd’ using rmarkdown + + Quitting from getting-started.Rmd:106-113 [pca_your_rec] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ... + 2. ├─plotly::ggplotly(loadings_plt) + 3. └─plotly:::ggplotly.ggplot(loadings_plt) + 4. └─plotly::gg2list(...) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'getting-started.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘getting-started.Rmd’ + + --- re-building ‘kmeans-umap.Rmd’ using rmarkdown + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘kknn’ + ``` + +# healthyR.ts + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/spsanderson/healthyR.ts +* Source code: https://github.com/cran/healthyR.ts +* Date/Publication: 2024-10-11 23:00:03 UTC +* Number of recursive dependencies: 210 + +Run `revdepcheck::cloud_details(, "healthyR.ts")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘healthyR.ts-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tidy_fft + > ### Title: Tidy Style FFT + > ### Aliases: tidy_fft + > + > ### ** Examples + > + > suppressPackageStartupMessages(library(dplyr)) + ... + > a <- tidy_fft( + + .data = data_tbl, + + .value_col = value, + + .date_col = date_col, + + .harmonics = 3, + + .frequency = 12 + + ) + Error in pm[[2]] : subscript out of bounds + Calls: tidy_fft -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘getting-started.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.3Mb + sub-directories of 1Mb or more: + doc 5.3Mb + ``` + +# heatmaply + +
+ +* Version: 1.5.0 +* GitHub: https://github.com/talgalili/heatmaply +* Source code: https://github.com/cran/heatmaply +* Date/Publication: 2023-10-06 20:50:02 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "heatmaply")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘heatmaply-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggheatmap + > ### Title: ggplot heatmap equivalent to heatmaply + > ### Aliases: ggheatmap + > + > ### ** Examples + > + > ggheatmap(mtcars) + ... + 17. └─ggplot2:::validate_as_data_frame(model) + 18. └─ggplot2:::check_data_frame_like(data) + 19. └─cli::cli_abort("{.code dim(data)} must return an {.cls integer} of length 2.") + 20. └─rlang::abort(...) + Warning in fortify(data, ...) : Arguments in `...` must be used. + ✖ Problematic arguments: + • labels = FALSE + • na.rm = TRUE + ℹ Did you misspell an argument name? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(heatmaply) + Loading required package: plotly + Loading required package: ggplot2 + + Attaching package: 'plotly' + + ... + 4. │ │ └─base::withCallingHandlers(...) + 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) + 6. ├─heatmaply:::predict_colors(ggplotly(g), plot_method = "ggplot") + 7. ├─plotly::ggplotly(g) + 8. └─plotly:::ggplotly.ggplot(g) + 9. └─plotly::gg2list(...) + + [ FAIL 60 | WARN 44 | SKIP 0 | PASS 181 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘heatmaply.Rmd’ using rmarkdown + + Quitting from heatmaply.Rmd:108-111 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'heatmaply.Rmd' failed with diagnostics: + ... + a valid -like object coercible by `as.data.frame()`. + Caused by error in `check_data_frame_like()`: + ! `dim(data)` must return an of length 2. + --- failed re-building ‘heatmaply.Rmd’ + + SUMMARY: processing the following file failed: + ‘heatmaply.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.5Mb + sub-directories of 1Mb or more: + doc 5.1Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) heatmaply.Rd:282: Lost braces + 282 | row and column dendrograms. The default uses stats{reorder.dendrogram}} + | ^ + checkRd: (-1) heatmapr.Rd:93: Lost braces + 93 | \item{reorderfun}{function(d, w) of dendrogram and weights for reordering the row and column dendrograms. The default uses stats{reorder.dendrogram}} + | ^ + checkRd: (-1) is.plotly.Rd:16: Lost braces + 16 | Helpful for the plot_method in link{heatmaply}. + | ^ + ``` + +# heplots + +
+ +* Version: 1.7.4 +* GitHub: https://github.com/friendly/heplots +* Source code: https://github.com/cran/heplots +* Date/Publication: 2025-04-16 18:10:02 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "heplots")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘HE_manova.Rmd’ using rmarkdown + Warning: Duplicated chunk option(s) 'echo' in both chunk header and pipe comments of the chunk 'plastic1a'. + + Quitting from HE_manova.Rmd:148-170 [addhealth-means-each] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'HE_manova.Rmd' failed with diagnostics: + Can't add `p2` to a object. + --- failed re-building ‘HE_manova.Rmd’ + + --- re-building ‘HE_mmra.Rmd’ using rmarkdown + ``` + +# hermiter + +
+ +* Version: 2.3.1 +* GitHub: https://github.com/MikeJaredS/hermiter +* Source code: https://github.com/cran/hermiter +* Date/Publication: 2024-03-06 23:50:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "hermiter")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘hermiter.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.8Mb + sub-directories of 1Mb or more: + R 2.6Mb + doc 1.9Mb + libs 2.0Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# hesim + +
+ +* Version: 0.5.5 +* GitHub: https://github.com/hesim-dev/hesim +* Source code: https://github.com/cran/hesim +* Date/Publication: 2024-09-18 23:10:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "hesim")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(hesim) + > + > test_check("hesim") + sample = 1 + sample = 2 + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 1121 ] + ... + ── Failure ('test-plot.R:95:3'): autoplot.stateprobs() allows confidence intervals ── + p$labels$fill not equal to "strategy_id". + target is NULL, current is character + ── Failure ('test-plot.R:99:3'): autoplot.stateprobs() allows confidence intervals ── + p$labels$fill not equal to "strategy_id". + target is NULL, current is character + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 1121 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 35.9Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 2.2Mb + libs 30.8Mb + ``` + +# heumilkr + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/lschneiderbauer/heumilkr +* Source code: https://github.com/cran/heumilkr +* Date/Publication: 2025-04-24 08:30:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "heumilkr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘clarke_wright_performance.Rmd’ using rmarkdown + + Quitting from clarke_wright_performance.Rmd:68-97 [perf_scale_based_graph] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + --- + ... + + Error: processing vignette 'clarke_wright_performance.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + --- failed re-building ‘clarke_wright_performance.Rmd’ + + SUMMARY: processing the following file failed: + ‘clarke_wright_performance.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# hhmR + +
+ +* Version: 0.0.1 +* GitHub: https://github.com/sgmmahon/hhmR +* Source code: https://github.com/cran/hhmR +* Date/Publication: 2025-01-14 15:10:01 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "hhmR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘hhmR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: hhm + > ### Title: Hierarchical Heatmap + > ### Aliases: hhm + > + > ### ** Examples + > + > # Import toy demonstration dataset (see `?example_migration` for see details) + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘hhmR_overview.Rmd’ using rmarkdown + + Quitting from hhmR_overview.Rmd:822-835 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'hhmR_overview.Rmd' failed with diagnostics: + Can't add `x[[i]]` to a object. + --- failed re-building ‘hhmR_overview.Rmd’ + + SUMMARY: processing the following file failed: + ‘hhmR_overview.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# hidecan + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/PlantandFoodResearch/hidecan +* Source code: https://github.com/cran/hidecan +* Date/Publication: 2023-02-10 09:40:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "hidecan")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 17. └─ggplot2:::add_ggplot(e1, e2, e2name) + 18. └─ggplot2::ggplot_add(object, p, objectname) + 19. ├─S7::S7_dispatch() + 20. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 21. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 22. └─rlang::abort(...) + + [ FAIL 4 | WARN 0 | SKIP 1 | PASS 89 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘hidecan-step-by-step.Rmd’ using rmarkdown + + Quitting from hidecan-step-by-step.Rmd:167-174 [create-hidecan-plot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'hidecan-step-by-step.Rmd' failed with diagnostics: + Can't add `ggnewscale::new_scale_fill()` to a object. + ... + + Error: processing vignette 'hidecan.Rmd' failed with diagnostics: + Can't add `ggnewscale::new_scale_fill()` to a object. + --- failed re-building ‘hidecan.Rmd’ + + SUMMARY: processing the following files failed: + ‘hidecan-step-by-step.Rmd’ ‘hidecan.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# highlightr + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/rachelesrogers/highlightr +* Source code: https://github.com/cran/highlightr +* Date/Publication: 2024-10-17 18:10:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "highlightr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘highlightr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: highlighted_text + > ### Title: Create Highlighted Testimony + > ### Aliases: highlighted_text + > + > ### ** Examples + > + > comment_example_rename <- dplyr::rename(comment_example, page_notes=Notes) + ... + Joining with `by = join_by(collocation)` + Joining with `by = join_by(word_number)` + > merged_frequency <- transcript_frequency(transcript_example_rename, collocation_object) + Joining with `by = join_by(to_merge)` + Joining with `by = join_by(text, lines, n_words, words, word_num, word_length, + x_coord, to_merge, stanza_freq, word_number)` + > freq_plot <- collocation_plot(merged_frequency) + > page_highlight <- highlighted_text(freq_plot, merged_frequency) + Error: Can't get S7 properties with `$`. Did you mean `plot_object$build@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + Error: Can't get S7 properties with `$`. Did you mean `plot_object$build@data`? + Backtrace: + ▆ + 1. └─highlightr::highlighted_text(freq_plot) at test-highlighted_text.R:23:3 + 2. ├─plot_object$build$data + 3. └─S7:::`$.S7_object`(plot_object$build, "data") + + [ FAIL 4 | WARN 3 | SKIP 0 | PASS 35 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘highlightr.Rmd’ using rmarkdown + + Quitting from highlightr.Rmd:74-78 [unnamed-chunk-7] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `plot_object$build@data`? + --- + Backtrace: + ... + + Error: processing vignette 'wikipedia-highlighter.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `plot_object$build@data`? + --- failed re-building ‘wikipedia-highlighter.Rmd’ + + SUMMARY: processing the following files failed: + ‘highlightr.Rmd’ ‘wikipedia-highlighter.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 6 marked UTF-8 strings + ``` + +# hmer + +
+ +* Version: 1.6.0 +* GitHub: https://github.com/andy-iskauskas/hmer +* Source code: https://github.com/cran/hmer +* Date/Publication: 2024-05-31 13:30:07 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "hmer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘hmer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Proto_emulator + > ### Title: Prototype Class for Emulator-like Objects + > ### Aliases: Proto_emulator + > + > ### ** Examples + > + > # Use linear regression with an "error" on the SIR dataset. + ... + 5.0845280 2.5233162 2.1004352 5.5958288 6.2210115 5.0446000 5.2278751 2.7367493 + 71 72 73 74 75 76 77 78 + 0.8839762 2.3799804 3.1068393 1.6507576 3.3745018 3.6494126 2.8932212 7.9416568 + 79 80 81 82 83 84 85 86 + 0.3464207 3.1117428 0.7681329 5.7715196 4.8774590 3.9468858 4.3563842 2.2535948 + 87 88 89 90 + 1.8418017 8.3594335 2.3102947 2.6746812 + > emulator_plot(proto_ems) + Error: C stack usage 9963124 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘demonstrating-the-hmer-package.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.5Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 2.0Mb + doc 1.5Mb + ``` + +# hmsidwR + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/Fgazzelloni/hmsidwR +* Source code: https://github.com/cran/hmsidwR +* Date/Publication: 2024-11-13 15:00:02 UTC +* Number of recursive dependencies: 175 + +Run `revdepcheck::cloud_details(, "hmsidwR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘hmsidwR.Rmd’ using rmarkdown + + Quitting from hmsidwR.Rmd:51-84 [unnamed-chunk-6] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + ... + + Error: processing vignette 'hmsidwR.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘hmsidwR.Rmd’ + + SUMMARY: processing the following file failed: + ‘hmsidwR.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.2Mb + sub-directories of 1Mb or more: + data 2.0Mb + doc 4.0Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1686 marked UTF-8 strings + ``` + +# hrbrthemes + +
+ +* Version: 0.8.7 +* GitHub: NA +* Source code: https://github.com/cran/hrbrthemes +* Date/Publication: 2024-03-04 00:20:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "hrbrthemes")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > library(testthat) + > test_check("hrbrthemes") + Loading required package: hrbrthemes + [ FAIL 1 | WARN 0 | SKIP 2 | PASS 9 ] + + ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ + • On CRAN (2): 'test-hrbrthemes.R:71:3', 'test-themes.R:4:3' + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-hrbrthemes.R:16:3'): we can do something ───────────────────── + `gg_check(gg_tmp)` did not produce any messages. + + [ FAIL 1 | WARN 0 | SKIP 2 | PASS 9 ] + Deleting unused snapshots: + • themes/theme-ipsum-rc.svg + • themes/theme-ipsum.svg + Error: Test failures + Execution halted + ``` + +# hstats + +
+ +* Version: 1.2.1 +* GitHub: https://github.com/ModelOriented/hstats +* Source code: https://github.com/cran/hstats +* Date/Publication: 2024-08-17 15:50:09 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "hstats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘hstats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: average_loss + > ### Title: Average Loss + > ### Aliases: average_loss average_loss.default average_loss.ranger + > ### average_loss.explainer + > + > ### ** Examples + > + ... + Average loss + Sepal.Length Sepal.Width + setosa 0.004646018 0.011500586 + versicolor 0.003121888 0.007489254 + virginica 0.002525590 0.007419552 + > plot(L) + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +# HTT + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/HTT +* Date/Publication: 2023-03-12 14:30:02 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "HTT")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘HTT-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Hypothesis Testing Tree + > ### Title: Hypothesis Testing Tree + > ### Aliases: HTT + > ### Keywords: HTT + > + > ### ** Examples + > + ... + Backtrace: + ▆ + 1. ├─base::plot(Bostonhtt) + 2. └─HTT:::plot.htt(Bostonhtt) + 3. └─ggraph::geom_node_point() + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘Intro.Rmd’ using rmarkdown + + Quitting from Intro.Rmd:23-32 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Intro.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘Intro.Rmd’ + + SUMMARY: processing the following file failed: + ‘Intro.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.1Mb + sub-directories of 1Mb or more: + libs 4.5Mb + ``` + +# HVT + +
+ +* Version: 25.2.3 +* GitHub: https://github.com/Mu-Sigma/HVT +* Source code: https://github.com/cran/HVT +* Date/Publication: 2025-03-27 11:40:13 UTC +* Number of recursive dependencies: 208 + +Run `revdepcheck::cloud_details(, "HVT")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘HVT-Ex.R’ failed + The error most likely occurred in: + + > ### Name: clustHVT + > ### Title: Performing Hierarchical Clustering Analysis + > ### Aliases: clustHVT + > ### Keywords: Clustering_Analysis + > + > ### ** Examples + > + ... + > scoring <- scoreHVT(dataset, hvt.results, analysis.plots = TRUE, names.column = dataset[,1]) + Scale for colour is already present. + Adding another scale for colour, which will replace the existing scale. + Scale for x is already present. + Adding another scale for x, which will replace the existing scale. + Scale for y is already present. + Adding another scale for y, which will replace the existing scale. + Error in pm[[2]] : subscript out of bounds + Calls: scoreHVT + Execution halted + ``` + +# hyperoverlap + +
+ +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/hyperoverlap +* Date/Publication: 2021-08-10 08:30:05 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "hyperoverlap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘hyperoverlap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: hyperoverlap_pairs_plot + > ### Title: Overlap heatmap plotting for analysis of multiple entities + > ### Aliases: hyperoverlap_pairs_plot + > + > ### ** Examples + > + > hyperoverlap.iris.set = hyperoverlap_set(iris[1:3],iris$Species, kernel="linear") + > hyperoverlap_pairs_plot(hyperoverlap.iris.set) + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘hyperoverlap-vignette.Rmd’ using rmarkdown + ``` + +* checking whether package ‘hyperoverlap’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘hyperoverlap’ + See ‘/tmp/workdir/hyperoverlap/new/hyperoverlap.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.5Mb + sub-directories of 1Mb or more: + doc 6.3Mb + ``` + +# hypervolume + +
+ +* Version: 3.1.5 +* GitHub: https://github.com/bblonder/hypervolume +* Source code: https://github.com/cran/hypervolume +* Date/Publication: 2025-01-17 20:50:16 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "hypervolume")` for more info + +
+ +## Newly broken + +* checking whether package ‘hypervolume’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘hypervolume’ + See ‘/tmp/workdir/hypervolume/new/hypervolume.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.4Mb + sub-directories of 1Mb or more: + doc 2.8Mb + libs 2.4Mb + ``` + +# hypsoLoop + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/hypsoLoop +* Date/Publication: 2022-02-08 09:00:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "hypsoLoop")` for more info + +
+ +## Newly broken + +* checking whether package ‘hypsoLoop’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::set_theme’ by ‘sjPlot::set_theme’ when loading ‘hypsoLoop’ + See ‘/tmp/workdir/hypsoLoop/new/hypsoLoop.Rcheck/00install.out’ for details. + ``` + +# ibawds + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/stibu81/ibawds +* Source code: https://github.com/cran/ibawds +* Date/Publication: 2025-03-07 16:20:05 UTC +* Number of recursive dependencies: 216 + +Run `revdepcheck::cloud_details(, "ibawds")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ibawds) + Loading required package: dslabs + > + > test_check("ibawds") + [ FAIL 2 | WARN 0 | SKIP 14 | PASS 157 ] + ... + • dist_plots/density-plot-poisson.svg + • dist_plots/density-plot-weibull.svg + • dist_plots/distribution-plot-poisson-continuous.svg + • dist_plots/distribution-plot-uniform.svg + • voronoi/voronoi-suppress-data.svg + • voronoi/voronoi-uncoloured-data.svg + • voronoi/voronoi-with-data.svg + • voronoi/voronoi-with-options.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1 marked UTF-8 string + ``` + +# ibdsim2 + +
+ +* Version: 2.2.0 +* GitHub: https://github.com/magnusdv/ibdsim2 +* Source code: https://github.com/cran/ibdsim2 +* Date/Publication: 2025-03-03 13:30:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "ibdsim2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ibdsim2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotSegmentDistribution + > ### Title: Scatter plots of IBD segment distributions + > ### Aliases: plotSegmentDistribution + > + > ### ** Examples + > + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# iBreakDown + +
+ +* Version: 2.1.2 +* GitHub: https://github.com/ModelOriented/iBreakDown +* Source code: https://github.com/cran/iBreakDown +* Date/Publication: 2023-12-01 22:20:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "iBreakDown")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(iBreakDown) + + Attaching package: 'iBreakDown' + + The following object is masked from 'package:testthat': + + ... + ── Failure ('test_plot.R:45:3'): Output format ───────────────────────────────── + plot(bd_rf_reg, max_features = 2) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_plot.R:46:3'): Output format ───────────────────────────────── + plot(bd_rf_reg, start_baseline = TRUE) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_plot.R:47:3'): Output format ───────────────────────────────── + plot(bd_rf_reg_distr, plot_distributions = TRUE) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 7 | WARN 10 | SKIP 0 | PASS 60 ] + Error: Test failures + Execution halted + ``` + +# ichimoku + +
+ +* Version: 1.5.6 +* GitHub: https://github.com/shikokuchuo/ichimoku +* Source code: https://github.com/cran/ichimoku +* Date/Publication: 2025-03-14 18:00:05 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "ichimoku")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ichimoku) + > + > test_check("ichimoku") + Data verified by SHA256: 02a4376885505a161032f4f4d4240798c6e776943dbaa54f374f92b2fccea1a9 + Data verified by SHA256: 02a4376885505a161032f4f4d4240798c6e776943dbaa54f374f92b2fccea1a9 + Loading required package: shiny + ... + 32. │ └─base (local) doWithOneRestart(return(expr), restart) + 33. └─vctrs::stop_incompatible_cast(...) + 34. └─vctrs::stop_incompatible_type(...) + 35. └─vctrs:::stop_incompatible(...) + 36. └─vctrs:::stop_vctrs(...) + 37. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 208 ] + Error: Test failures + Execution halted + ``` + +# ICSClust + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/AuroreAA/ICSClust +* Source code: https://github.com/cran/ICSClust +* Date/Publication: 2023-09-21 13:20:02 UTC +* Number of recursive dependencies: 133 + +Run `revdepcheck::cloud_details(, "ICSClust")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ICSClust-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ICSClust + > ### Title: Tandem clustering with ICS + > ### Aliases: ICSClust + > + > ### ** Examples + > + > X <- iris[,1:4] + ... + + 2 components are selected: IC.4 IC.1 + + 3 clusters are identified: + + 1 2 3 + 44 57 49 + > plot(out) + Error: C stack usage 9964772 is too close to the limit + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + [ FAIL 1 | WARN 7 | SKIP 0 | PASS 80 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Error ('test-plots.R:197:1'): component plot on ICS object with select from ICSç ── + + Error: C stack usage 9962228 is too close to the limit + + [ FAIL 1 | WARN 7 | SKIP 0 | PASS 80 ] + Error: Test failures + Execution halted + ``` + +# ICtest + +
+ +* Version: 0.3-5 +* GitHub: NA +* Source code: https://github.com/cran/ICtest +* Date/Publication: 2022-05-18 07:30:29 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "ICtest")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ICtest-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggladleplot + > ### Title: Ladle Plot for an Object of Class ladle Using ggplot2 + > ### Aliases: ggladleplot + > ### Keywords: hplot + > + > ### ** Examples + > + > n <- 1000 + > X <- cbind(rexp(n), rt(n,5), rnorm(n), rnorm(n), rnorm(n), rnorm(n)) + > test <- FOBIladle(X) + > ggladleplot(test) + Error: C stack usage 9963364 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ICA.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.9Mb + sub-directories of 1Mb or more: + doc 2.5Mb + libs 3.0Mb + ``` + +# ICvectorfields + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/goodsman/ICvectorfields +* Source code: https://github.com/cran/ICvectorfields +* Date/Publication: 2022-02-26 22:30:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "ICvectorfields")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Using_ICvectorfields.Rmd’ using rmarkdown + ``` + +# IDMIR + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/IDMIR +* Date/Publication: 2023-11-09 15:30:02 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "IDMIR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘IDMIR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: PlotSurvival + > ### Title: PlotSurvival + > ### Aliases: PlotSurvival + > + > ### ** Examples + > + > # Obtain the example data + ... + 11. └─base_ops[[.Generic]](e1, e2) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. └─ggplot2::ggplot_add(object, p, objectname) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘IDMIR.Rmd’ using rmarkdown + + Quitting from IDMIR.Rmd:119-130 [unnamed-chunk-7] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'IDMIR.Rmd' failed with diagnostics: + Can't add `ggtheme` to a object. + --- failed re-building ‘IDMIR.Rmd’ + + SUMMARY: processing the following file failed: + ‘IDMIR.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# idopNetwork + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/cxzdsa2332/idopNetwork +* Source code: https://github.com/cran/idopNetwork +* Date/Publication: 2023-04-18 06:50:02 UTC +* Number of recursive dependencies: 75 + +Run `revdepcheck::cloud_details(, "idopNetwork")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘idopNetwork_vignette.Rmd’ using rmarkdown + + Quitting from idopNetwork_vignette.Rmd:85-87 [unnamed-chunk-9] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@layout`? + --- + ... + + Error: processing vignette 'idopNetwork_vignette.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@layout`? + --- failed re-building ‘idopNetwork_vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘idopNetwork_vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# iglu + +
+ +* Version: 4.2.2 +* GitHub: https://github.com/irinagain/iglu +* Source code: https://github.com/cran/iglu +* Date/Publication: 2025-01-14 22:30:05 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "iglu")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘iglu-Ex.R’ failed + The error most likely occurred in: + + > ### Name: agp + > ### Title: Display Ambulatory Glucose Profile (AGP) statistics for selected + > ### subject + > ### Aliases: agp + > + > ### ** Examples + > + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 288 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘AGP_and_Episodes.Rmd’ using rmarkdown + + Quitting from AGP_and_Episodes.Rmd:23-25 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'AGP_and_Episodes.Rmd' failed with diagnostics: + Can't add `p1` to a object. + --- failed re-building ‘AGP_and_Episodes.Rmd’ + + --- re-building ‘MAGE.Rmd’ using rmarkdown + ``` + +# ImHD + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/ImHD +* Date/Publication: 2023-09-12 06:12:44 UTC +* Number of recursive dependencies: 39 + +Run `revdepcheck::cloud_details(, "ImHD")` for more info + +
+ +## Newly broken + +* checking whether package ‘ImHD’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘ImHD’ + See ‘/tmp/workdir/ImHD/new/ImHD.Rcheck/00install.out’ for details. + ``` + +# iml + +
+ +* Version: 0.11.4 +* GitHub: https://github.com/giuseppec/iml +* Source code: https://github.com/cran/iml +* Date/Publication: 2025-02-24 12:50:02 UTC +* Number of recursive dependencies: 174 + +Run `revdepcheck::cloud_details(, "iml")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘iml-Ex.R’ failed + The error most likely occurred in: + + > ### Name: FeatureEffects + > ### Title: Effect of a feature on predictions + > ### Aliases: FeatureEffects + > + > ### ** Examples + > + > # We train a random forest on the Boston dataset: + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘intro.Rmd’ using rmarkdown + ``` + +# immunarch + +
+ +* Version: 0.9.1 +* GitHub: https://github.com/immunomind/immunarch +* Source code: https://github.com/cran/immunarch +* Date/Publication: 2024-03-18 19:10:06 UTC +* Number of recursive dependencies: 200 + +Run `revdepcheck::cloud_details(, "immunarch")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘immunarch-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geneUsageAnalysis + > ### Title: Post-analysis of V-gene and J-gene statistics: PCA, clustering, + > ### etc. + > ### Aliases: geneUsageAnalysis + > + > ### ** Examples + > + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.7Mb + sub-directories of 1Mb or more: + data 5.5Mb + doc 1.6Mb + ``` + +# implicitMeasures + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/implicitMeasures +* Date/Publication: 2022-02-16 13:40:13 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "implicitMeasures")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(implicitMeasures) + > + > test_check("implicitMeasures") + [ FAIL 11 | WARN 2 | SKIP 2 | PASS 65 ] + + ... + 5. └─implicitMeasures::multi_dscore(iat_data, ds = "error-inflation") + 6. └─ggplot2::geom_violin(draw_quantiles = TRUE) + 7. └─ggplot2:::check_numeric(draw_quantiles) + 8. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call) + 9. └─ggplot2:::stop_input_type(...) + 10. └─rlang::abort(message, ..., call = call, arg = arg) + + [ FAIL 11 | WARN 2 | SKIP 2 | PASS 65 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘IAT-example.Rmd’ using rmarkdown + ``` + +# imputeTS + +
+ +* Version: 3.3 +* GitHub: https://github.com/SteffenMoritz/imputeTS +* Source code: https://github.com/cran/imputeTS +* Date/Publication: 2022-09-09 06:52:55 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "imputeTS")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘imputeTS-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggplot_na_distribution2 + > ### Title: Stacked Barplot to Visualize Missing Values per Interval + > ### Aliases: ggplot_na_distribution2 + > + > ### ** Examples + > + > # Example 1: Visualize the missing values in tsNH4 time series as percentages + ... + 18. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 19. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 20. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 21. │ └─base::withCallingHandlers(...) + 22. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 23. ├─S7::S7_dispatch() + 24. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 25. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 26. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > test_check("imputeTS") + Loading required package: imputeTS + [ FAIL 34 | WARN 18 | SKIP 52 | PASS 411 ] + + ══ Skipped tests (52) ══════════════════════════════════════════════════════════ + • On CRAN (52): 'test-ggplot_na_distribution.R:59:3', + ... + `expected`: TRUE + ── Failure ('test-ggplot_na_imputations.R:81:5'): Check that all parameters of plot run without error ── + is.list(...) is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 34 | WARN 18 | SKIP 52 | PASS 411 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘Cheat_Sheet_imputeTS.pdf.asis’ using asis + --- finished re-building ‘Cheat_Sheet_imputeTS.pdf.asis’ + + --- re-building ‘imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx’ using tex + Error: processing vignette 'imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx' failed with diagnostics: + Running 'texi2dvi' on 'imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx' failed. + LaTeX errors: + ! LaTeX Error: File `etex.sty' not found. + + ... + + ! Emergency stop. + + + l.5 \usepackage + [utf8]{inputenc}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘imputeTS-Time-Series-Missing-Value-Imputation-in-R.ltx’ + + --- re-building ‘gallery_visualizations.Rmd’ using rmarkdown + ``` + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + data 2.0Mb + doc 1.1Mb + libs 1.9Mb + ``` + +# imsig + +
+ +* Version: 1.1.3 +* GitHub: https://github.com/ajitjohnson/imsig +* Source code: https://github.com/cran/imsig +* Date/Publication: 2021-01-10 01:00:02 UTC +* Number of recursive dependencies: 49 + +Run `revdepcheck::cloud_details(, "imsig")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘imsig-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_survival + > ### Title: Forest plot of survial analysis by ImSig + > ### Aliases: plot_survival + > + > ### ** Examples + > + > plot_survival (exp = example_data, r = 0.7, cli = example_cli, time = 'time', status= 'status') + Error: object properties are invalid: + - @colour must be , , or , not + Execution halted + ``` + +# incidence + +
+ +* Version: 1.7.5 +* GitHub: https://github.com/reconhub/incidence +* Source code: https://github.com/cran/incidence +* Date/Publication: 2024-05-31 10:10:02 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "incidence")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘incidence-Ex.R’ failed + The error most likely occurred in: + + > ### Name: get_fit + > ### Title: Accessors for 'incidence_fit' objects + > ### Aliases: get_fit get_fit.incidence_fit get_fit.incidence_fit_list + > ### get_info get_info.incidence_fit get_info.incidence_fit_list + > + > ### ** Examples + > + ... + + })} + Loading required package: outbreaks + > dat <- ebola_sim$linelist$date_of_onset + > sex <- ebola_sim$linelist$gender + > i.sex <- incidence(dat, interval = 7, group = sex) + > fits <- fit_optim_split(i.sex, separate_split = TRUE) + Error in names(out$plot) <- names(res) : + invalid to use names()<- on an S4 object of class 'ggplot' + Calls: withAutoprint ... source -> withVisible -> eval -> eval -> fit_optim_split + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(incidence) + > + > test_check("incidence") + [ FAIL 1 | WARN 0 | SKIP 18 | PASS 213 ] + + ══ Skipped tests (18) ══════════════════════════════════════════════════════════ + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Error ('test-accessors.R:156:1'): (code run outside of `test_that()`) ─────── + Error in `names(out$plot) <- names(res)`: invalid to use names()<- on an S4 object of class 'ggplot' + Backtrace: + ▆ + 1. └─incidence::fit_optim_split(i.sex.o) at test-accessors.R:156:1 + + [ FAIL 1 | WARN 0 | SKIP 18 | PASS 213 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘conversions.Rmd’ using rmarkdown + ``` + +# IncidencePrevalence + +
+ +* Version: 1.2.0 +* GitHub: NA +* Source code: https://github.com/cran/IncidencePrevalence +* Date/Publication: 2025-03-08 10:10:02 UTC +* Number of recursive dependencies: 141 + +Run `revdepcheck::cloud_details(, "IncidencePrevalence")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘a01_Introduction_to_IncidencePrevalence.Rmd’ using rmarkdown + ``` + +# infer + +
+ +* Version: 1.0.8 +* GitHub: https://github.com/tidymodels/infer +* Source code: https://github.com/cran/infer +* Date/Publication: 2025-04-14 17:20:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "infer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘infer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: shade_confidence_interval + > ### Title: Add information about confidence interval + > ### Aliases: shade_confidence_interval shade_ci + > + > ### ** Examples + > + > # find the point estimate---mean number of hours worked per week + ... + > + > + > # and plot it! + > boot_dist %>% + + visualize() + + + shade_confidence_interval(ci) + Error in check_subsettable(x, allow_env = TRUE) : + S7 objects are not subsettable. + Calls: %>% ... compute_bin_breaks -> [[ -> [[.S7_object -> check_subsettable + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 17. │ └─infer:::simulation_layer(data, dots = dots) + 18. │ └─infer:::compute_bin_breaks(data, bins) + 19. │ ├─ggplot2::ggplot_build(g)[["data"]] + 20. │ └─S7:::`[[.S7_object`(ggplot2::ggplot_build(g), "data") + 21. │ └─S7:::check_subsettable(x, allow_env = TRUE) + 22. │ └─base::stop("S7 objects are not subsettable.") + 23. └─base::.handleSimpleError(...) + 24. └─testthat (local) h(simpleError(msg, call)) + 25. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘anova.Rmd’ using rmarkdown + ``` + +# inferCSN + +
+ +* Version: 1.1.7 +* GitHub: https://github.com/mengxu98/inferCSN +* Source code: https://github.com/cran/inferCSN +* Date/Publication: 2025-03-30 17:00:02 UTC +* Number of recursive dependencies: 187 + +Run `revdepcheck::cloud_details(, "inferCSN")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘inferCSN-Ex.R’ failed + The error most likely occurred in: + + > ### Name: calculate_auc + > ### Title: Calculate AUC Metrics + > ### Aliases: calculate_auc + > + > ### ** Examples + > + > data("example_matrix") + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 27.7Mb + sub-directories of 1Mb or more: + data 2.0Mb + libs 25.1Mb + ``` + +# ingredients + +
+ +* Version: 2.3.0 +* GitHub: https://github.com/ModelOriented/ingredients +* Source code: https://github.com/cran/ingredients +* Date/Publication: 2023-01-15 11:40:02 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "ingredients")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(DALEX) + Welcome to DALEX (version: 2.4.3). + Find examples and detailed introduction at: http://ema.drwhy.ai/ + Additional features will be available after installation of: ggpubr. + Use 'install_dependencies()' to get all suggested dependencies + > library(ingredients) + ... + `expected`: TRUE + ── Failure ('test_single_variable.R:25:3'): test ceteris_paribus ─────────────── + "gg" %in% class(pl) is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 27 | WARN 5 | SKIP 0 | PASS 84 ] + Error: Test failures + Execution halted + ``` + +# injurytools + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/lzumeta/injurytools +* Source code: https://github.com/cran/injurytools +* Date/Publication: 2023-11-14 17:20:05 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "injurytools")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘estimate-epi-measures.Rmd’ using rmarkdown + --- finished re-building ‘estimate-epi-measures.Rmd’ + + --- re-building ‘model-injury-data-i.Rmd’ using rmarkdown + ``` + +# inlabru + +
+ +* Version: 2.12.0 +* GitHub: https://github.com/inlabru-org/inlabru +* Source code: https://github.com/cran/inlabru +* Date/Publication: 2024-11-21 18:30:02 UTC +* Number of recursive dependencies: 134 + +Run `revdepcheck::cloud_details(, "inlabru")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘inlabru-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gg.SpatRaster + > ### Title: Geom wrapper for SpatRaster objects + > ### Aliases: gg.SpatRaster + > + > ### ** Examples + > + > if (require("ggplot2", quietly = TRUE) && + ... + Backtrace: + ▆ + 1. ├─inlabru::gg(gcov$elevation) + 2. └─inlabru:::gg.SpatRaster(gcov$elevation) + 3. └─tidyterra::geom_spatraster(data = data, ...) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘stars’ + ``` + +# insurancerating + +
+ +* Version: 0.7.5 +* GitHub: https://github.com/MHaringa/insurancerating +* Source code: https://github.com/cran/insurancerating +* Date/Publication: 2024-10-09 17:20:02 UTC +* Number of recursive dependencies: 133 + +Run `revdepcheck::cloud_details(, "insurancerating")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘insurancerating-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot.riskfactor + > ### Title: Automatically create a ggplot for objects obtained from + > ### rating_factors() + > ### Aliases: autoplot.riskfactor + > + > ### ** Examples + > + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +# interpretCI + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/cardiomoon/interpretCI +* Source code: https://github.com/cran/interpretCI +* Date/Publication: 2022-01-28 08:50:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "interpretCI")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘interpretCI-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.meanCI + > ### Title: S3 method for an object of class "meanCI" + > ### Aliases: plot.meanCI + > + > ### ** Examples + > + > meanCI(mtcars,mpg) %>% plot() + > meanCI(mtcars,am,mpg) %>% plot() + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(gg)@layout`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Confidence_interval_for_a_mean.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘moonBook’ + All declared Imports should be used. + ``` + +# inTextSummaryTable + +
+ +* Version: 3.3.3 +* GitHub: https://github.com/openanalytics/inTextSummaryTable +* Source code: https://github.com/cran/inTextSummaryTable +* Date/Publication: 2024-06-12 18:30:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "inTextSummaryTable")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(inTextSummaryTable) + > + > test_check("inTextSummaryTable") + [ FAIL 64 | WARN 0 | SKIP 0 | PASS 874 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + Error in `geom_point(mapping = do.call(aes, c(aesBase, list(y = sym("meanVar")), + if (!is.null(colorVar) & useShape) list(shape = sym("colorVar")))), + position = pd, size = sizePoint, data = data)`: Problem while setting up geom aesthetics. + ℹ Error occurred in the 2nd layer. + Caused by error in `list_sizes()`: + ! `x$size` must be a vector, not a object. + + [ FAIL 64 | WARN 0 | SKIP 0 | PASS 874 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘inTextSummaryTable-advanced.Rmd’ using rmarkdown + --- finished re-building ‘inTextSummaryTable-advanced.Rmd’ + + --- re-building ‘inTextSummaryTable-aesthetics.Rmd’ using rmarkdown + + Quitting from inTextSummaryTable-aesthetics.Rmd:210-224 [aesthetics-defaultsVisualization] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + ... + Error: processing vignette 'inTextSummaryTable-visualization.Rmd' failed with diagnostics: + The `plot.margin` theme element must be a vector of length 4 + --- failed re-building ‘inTextSummaryTable-visualization.Rmd’ + + SUMMARY: processing the following files failed: + ‘inTextSummaryTable-aesthetics.Rmd’ + ‘inTextSummaryTable-visualization.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.2Mb + sub-directories of 1Mb or more: + doc 9.7Mb + ``` + +# intradayModel + +
+ +* Version: 0.0.1 +* GitHub: https://github.com/convexfi/intradayModel +* Source code: https://github.com/cran/intradayModel +* Date/Publication: 2023-05-22 08:30:02 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "intradayModel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘intradayModel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: generate_plots + > ### Title: Plot Analysis and Forecast Result + > ### Aliases: generate_plots + > + > ### ** Examples + > + > library(intradayModel) + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘intradayModel.Rmd’ using rmarkdown + Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : + cannot find pngquant; please install and put it in PATH + Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : + cannot find pngquant; please install and put it in PATH + Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { : + cannot find pngquant; please install and put it in PATH + + ... + + Error: processing vignette 'intradayModel.Rmd' failed with diagnostics: + Can't add `e2` to a object. + --- failed re-building ‘intradayModel.Rmd’ + + SUMMARY: processing the following file failed: + ‘intradayModel.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) decompose_volume.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) decompose_volume.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) decompose_volume.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) decompose_volume.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fit_volume.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fit_volume.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fit_volume.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fit_volume.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) forecast_volume.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) forecast_volume.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) forecast_volume.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) forecast_volume.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) generate_plots.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) generate_plots.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) generate_plots.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# inventorize + +
+ +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/inventorize +* Date/Publication: 2022-05-31 22:20:09 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "inventorize")` for more info + +
+ +## Newly broken + +* checking whether package ‘inventorize’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘inventorize’ ... +** package ‘inventorize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in pm[[2]] : subscript out of bounds +Error: unable to load R code in package ‘inventorize’ +Execution halted +ERROR: lazy loading failed for package ‘inventorize’ +* removing ‘/tmp/workdir/inventorize/new/inventorize.Rcheck/inventorize’ + + +``` +### CRAN + +``` +* installing *source* package ‘inventorize’ ... +** package ‘inventorize’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Warning in qgamma(service_level, alpha, beta) : NaNs produced +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (inventorize) + + +``` +# iNZightPlots + +
+ +* Version: 2.15.3 +* GitHub: https://github.com/iNZightVIT/iNZightPlots +* Source code: https://github.com/cran/iNZightPlots +* Date/Publication: 2023-10-14 05:00:02 UTC +* Number of recursive dependencies: 162 + +Run `revdepcheck::cloud_details(, "iNZightPlots")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(iNZightPlots) + > + > test_check("iNZightPlots") + [ FAIL 24 | WARN 8 | SKIP 11 | PASS 304 ] + + ══ Skipped tests (11) ══════════════════════════════════════════════════════════ + ... + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + ── Error ('test_interaction.R:33:5'): FT plots return the correct response ───── + Error in `plot_theme(plot)`: Can't merge the `axis.title.x` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + + [ FAIL 24 | WARN 8 | SKIP 11 | PASS 304 ] + Error: Test failures + Execution halted + ``` + +# iNZightRegression + +
+ +* Version: 1.3.4 +* GitHub: https://github.com/iNZightVIT/iNZightRegression +* Source code: https://github.com/cran/iNZightRegression +* Date/Publication: 2024-04-05 02:32:59 UTC +* Number of recursive dependencies: 162 + +Run `revdepcheck::cloud_details(, "iNZightRegression")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘iNZightRegression-Ex.R’ failed + The error most likely occurred in: + + > ### Name: inzplot + > ### Title: inzplot method + > ### Aliases: inzplot inzplot.glm inzplot.lm + > + > ### ** Examples + > + > iris_fit <- lm(Sepal.Width ~ Sepal.Length, data = iris) + ... + 22. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 23. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 24. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 25. │ └─base::withCallingHandlers(...) + 26. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 27. ├─S7::S7_dispatch() + 28. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 29. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 30. └─rlang::abort(...) + Execution halted + ``` + +# iNZightTS + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/iNZightVIT/iNZightTS +* Source code: https://github.com/cran/iNZightTS +* Date/Publication: 2024-01-17 06:20:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "iNZightTS")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(iNZightTS) + > + > test_check("iNZightTS") + [ FAIL 12 | WARN 0 | SKIP 0 | PASS 66 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 16. └─ggplot2:::add_ggplot(e1, e2, e2name) + 17. └─ggplot2::ggplot_add(object, p, objectname) + 18. ├─S7::S7_dispatch() + 19. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 20. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 21. └─rlang::abort(...) + + [ FAIL 12 | WARN 0 | SKIP 0 | PASS 66 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘plotly’ + ``` + +# ipeaplot + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/ipeadata-lab/ipeaplot +* Source code: https://github.com/cran/ipeaplot +* Date/Publication: 2025-02-26 15:10:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "ipeaplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ipeaplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: scale_color_ipea + > ### Title: Scale color IPEA + > ### Aliases: scale_color_ipea + > + > ### ** Examples + > + > # Creating scale for ggplot2 graph using default arguments + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +# ipsRdbs + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/sujit-sahu/ipsRdbs +* Source code: https://github.com/cran/ipsRdbs +* Date/Publication: 2024-04-10 17:20:03 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "ipsRdbs")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.6Mb + sub-directories of 1Mb or more: + doc 5.2Mb + ``` + +# IPV + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/NilsPetras/IPV +* Source code: https://github.com/cran/IPV +* Date/Publication: 2022-09-30 15:00:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "IPV")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘IPV-Ex.R’ failed + The error most likely occurred in: + + > ### Name: nested_chart + > ### Title: Nested Chart + > ### Aliases: nested_chart + > + > ### ** Examples + > + > # as simple as that + > nested_chart(self_confidence) + Facet circle radius set to 0.211 based on the data. + cor_spacing set to 0.193 based on the data. + Relative scaling set to 3.78 based on the data. + Axis tick set to 0.1 based on the data. + dist_construct_label set to 0.5 based on the data. + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ipv-vignette.Rmd’ using rmarkdown + ``` + +# iRfcb + +
+ +* Version: 0.5.1 +* GitHub: https://github.com/EuropeanIFCBGroup/iRfcb +* Source code: https://github.com/cran/iRfcb +* Date/Publication: 2025-04-22 15:50:02 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "iRfcb")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + ── Error ('test-ifcb_psd_plot.R:78:3'): ifcb_psd_plot handles start_fit argument correctly ── + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(plot)@data`? + Backtrace: + ▆ + 1. ├─ggplot2::ggplot_build(plot)$data at test-ifcb_psd_plot.R:78:3 + 2. └─S7:::`$.S7_object`(ggplot2::ggplot_build(plot), data) at test-ifcb_psd_plot.R:78:3 + + [ FAIL 4 | WARN 0 | SKIP 33 | PASS 246 ] + Error: Test failures + Execution halted + ``` + +# IRon + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/nunompmoniz/IRon +* Source code: https://github.com/cran/IRon +* Date/Publication: 2023-01-20 07:20:06 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "IRon")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘IRon-Ex.R’ failed + The error most likely occurred in: + + > ### Name: sera + > ### Title: Squared Error-Relevance Area (SERA) + > ### Aliases: sera + > + > ### ** Examples + > + > library(IRon) + ... + 17. │ └─self$stat$setup_params(data, self$stat_params) + 18. │ └─ggplot2 (local) setup_params(...) + 19. │ └─base::match.fun(method) + 20. │ └─base::get(as.character(FUN), mode = "function", envir = envir) + 21. └─base::.handleSimpleError(...) + 22. └─rlang (local) h(simpleError(msg, call)) + 23. └─handlers[[1L]](cnd) + 24. └─cli::cli_abort(...) + 25. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.7Mb + sub-directories of 1Mb or more: + data 6.5Mb + ``` + +# isoorbi + +
+ +* Version: 1.3.1 +* GitHub: https://github.com/isoverse/isoorbi +* Source code: https://github.com/cran/isoorbi +* Date/Publication: 2024-08-27 05:10:03 UTC +* Number of recursive dependencies: 120 + +Run `revdepcheck::cloud_details(, "isoorbi")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + + ... + ── Failure ('test_plotting_functions.R:107:3'): orbi_plot_raw_data() tests ───── + orbi_plot_raw_data(df, y = "ratio") has type 'object', not 'list'. + ── Failure ('test_plotting_functions.R:139:3'): orbi_plot_isotopocule_coverage() tests ── + `fig` has type 'object', not 'list'. + ── Failure ('test_shotnoise_functions.R:94:3'): orbi_plot_shot_noise() tests ─── + orbi_plot_shot_noise(df, "time.min") has type 'object', not 'list'. + + [ FAIL 5 | WARN 1 | SKIP 0 | PASS 350 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘dual_inlet.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.3Mb + sub-directories of 1Mb or more: + doc 2.0Mb + extdata 3.3Mb + ``` + +# isopam + +
+ +* Version: 3.2 +* GitHub: NA +* Source code: https://github.com/cran/isopam +* Date/Publication: 2025-01-16 13:00:11 UTC +* Number of recursive dependencies: 40 + +Run `revdepcheck::cloud_details(, "isopam")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘isopam-Ex.R’ failed + The error most likely occurred in: + + > ### Name: isopam + > ### Title: Isopam (Clustering) + > ### Aliases: isopam plot.isopam identify.isopam summary.isopam print.isopam + > ### Keywords: cluster + > + > ### ** Examples + > + ... + [1] "Cir_riv, Sch_fer" + + $`2.2` + [1] "Car_sem, Cir_tub, Bra_pin, Phy_orb, Gla_pal" + + > + > ## plot with species fidelities (equalized phi) + > plot(it) + Error: Can't get S7 properties with `$`. Did you mean `plot_data@layout`? + Execution halted + ``` + +# isotracer + +
+ +* Version: 1.1.8 +* GitHub: NA +* Source code: https://github.com/cran/isotracer +* Date/Publication: 2025-03-07 18:50:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "isotracer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘isotracer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggflows + > ### Title: A quick-and-dirty way of visualizing relative flows in a network + > ### Aliases: ggflows + > + > ### ** Examples + > + > if (requireNamespace("ggraph")) { + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─isotracer::ggflows(z) + 2. └─ggraph::geom_edge_fan(...) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(isotracer) + To automatically run isotracer in parallel on a multicore CPU, you can call: + options(mc.cores = parallel::detectCores()) + + + Attaching package: 'isotracer' + ... + 19. └─isotracer:::ggtopo.topology(topo, layout = layout, edge = edge) + 20. └─ggraph::geom_edge_fan(...) + 21. └─ggplot2::layer(...) + 22. └─ggplot2:::validate_mapping(mapping, call_env) + 23. └─cli::cli_abort(msg, call = call) + 24. └─rlang::abort(...) + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 580 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking whether package ‘isotracer’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: namespace ‘colorspace’ is not available and has been replaced + See ‘/tmp/workdir/isotracer/new/isotracer.Rcheck/00install.out’ for details. + ``` + +* checking installed package size ... NOTE + ``` + installed size is 93.4Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 4.0Mb + doc 2.3Mb + libs 85.1Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘rstantools’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# itan + +
+ +* Version: 3.1.1 +* GitHub: https://github.com/arielarmijo/itan +* Source code: https://github.com/cran/itan +* Date/Publication: 2022-02-10 13:40:06 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "itan")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(itan) + > + > test_check("itan") + [ FAIL 1 | WARN 50 | SKIP 0 | PASS 104 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-agi.R:10:3'): agi ──────────────────────────────────────────── + class(item$i01$plot)[2] (`actual`) not equal to "ggplot" (`expected`). + + `actual`: "ggplot2::ggplot" + `expected`: "ggplot" + + [ FAIL 1 | WARN 50 | SKIP 0 | PASS 104 ] + Error: Test failures + Execution halted + ``` + +# itsdm + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/LLeiSong/itsdm +* Source code: https://github.com/cran/itsdm +* Date/Publication: 2023-06-11 00:00:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "itsdm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘itsdm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: convert_to_pa + > ### Title: Convert predicted suitability to presence-absence map. + > ### Aliases: convert_to_pa + > + > ### ** Examples + > + > # Using a pseudo presence-only occurrence dataset of + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +# ivDiag + +
+ +* Version: 1.0.6 +* GitHub: NA +* Source code: https://github.com/cran/ivDiag +* Date/Publication: 2023-09-17 06:00:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "ivDiag")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ivDiag-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ltz + > ### Title: Local-to-Zero Test + > ### Aliases: ltz + > + > ### ** Examples + > + > data(ivDiag) + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +# Jdmbs + +
+ +* Version: 1.4 +* GitHub: NA +* Source code: https://github.com/cran/Jdmbs +* Date/Publication: 2020-07-24 13:22:10 UTC +* Number of recursive dependencies: 35 + +Run `revdepcheck::cloud_details(, "Jdmbs")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Jdmbs-Ex.R’ failed + The error most likely occurred in: + + > ### Name: jdm_bs + > ### Title: A Monte Carlo Option Pricing Algorithm for Jump Diffusion Model + > ### Aliases: jdm_bs + > + > ### ** Examples + > + > jdm_bs(100,10,c(5500,6500,8000),c(0.1,0.2,0.05),c(0.11,0.115,0.1),2,c(6000,7000,12000),plot=TRUE) + Error: Can't find property @i + Execution halted + ``` + +# jointVIP + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/ldliao/jointVIP +* Source code: https://github.com/cran/jointVIP +* Date/Publication: 2024-11-22 03:10:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "jointVIP")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘jointVIP-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.post_jointVIP + > ### Title: plot the post_jointVIP object this plot uses the same custom + > ### options as the jointVIP object + > ### Aliases: plot.post_jointVIP + > + > ### ** Examples + > + ... + > ## the post_data here is not matched or weighted, only for illustrative purposes + > post_data <- data.frame(year = rnorm(50, 200, 5), + + pop = rnorm(50, 1000, 500), + + gdpPercap = runif(50, 100, 1000), + + trt = rbinom(50, 1, 0.5), + + out = rnorm(50, 1, 0.2)) + > post_dat_jointVIP = create_post_jointVIP(new_jointVIP, post_data) + > plot(post_dat_jointVIP) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + 5. ├─jointVIP:::plot.post_jointVIP(...) + 6. │ ├─base::`$<-`(`*tmp*`, "layers", value = ``) + 7. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "layers", value = ``) + 8. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 9. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 10. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 3 | WARN 12 | SKIP 1 | PASS 108 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘additional_options.Rmd’ using rmarkdown + ``` + +# jrt + +
+ +* Version: 1.1.2 +* GitHub: NA +* Source code: https://github.com/cran/jrt +* Date/Publication: 2023-04-13 18:10:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "jrt")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘jrt-Ex.R’ failed + The error most likely occurred in: + + > ### Name: jcc.plot + > ### Title: Plot the category curves for a judge. + > ### Aliases: jcc.plot + > + > ### ** Examples + > + > + ... + ▆ + 1. └─jrt::jcc.plot(fit, 1) + 2. ├─directlabels::direct.label(p, method = angled.boxes, debug = F) + 3. └─directlabels::direct.label.ggplot(p, method = angled.boxes, debug = F) + 4. └─directlabels::geom_dl(...) + 5. └─ggplot2::layer(...) + 6. └─ggplot2:::validate_mapping(mapping, call_env) + 7. └─cli::cli_abort(msg, call = call) + 8. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘my-vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) jrt.Rd:45-46: Lost braces + 45 | \item{Difference models (more or less constrained versions of the + | ^ + checkRd: (-1) jrt.Rd:54-55: Lost braces + 54 | \item{Divide-by-total models (more or less constrained versions of the + | ^ + ``` + +# jskm + +
+ +* Version: 0.5.11 +* GitHub: https://github.com/jinseob2kim/jstable +* Source code: https://github.com/cran/jskm +* Date/Publication: 2025-03-20 03:10:02 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "jskm")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(jskm) + > + > test_check("jskm") + [ FAIL 19 | WARN 0 | SKIP 0 | PASS 3 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test-km.R:51:3'): Run svyjskm ───────────────────────────────────── + svyjskm(s3, ci = T) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-km.R:52:3'): Run svyjskm ───────────────────────────────────── + svyjskm(s3, ci = F, showpercent = T) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-km.R:54:3'): Run svyjskm ───────────────────────────────────── + svyjskm(s4, ci = F) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 19 | WARN 0 | SKIP 0 | PASS 3 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘jskm.Rmd’ using rmarkdown + ``` + +# jtools + +
+ +* Version: 2.3.0 +* GitHub: https://github.com/jacob-long/jtools +* Source code: https://github.com/cran/jtools +* Date/Publication: 2024-08-25 13:20:02 UTC +* Number of recursive dependencies: 150 + +Run `revdepcheck::cloud_details(, "jtools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(jtools) + > + > + > test_check("jtools") + Failed with error: 'there is no package called 'brms'' + Failed with error: 'there is no package called 'rstanarm'' + ... + • export-summs/pc-brmmv2-multidist-select-dv.svg + • export-summs/pc-glm1-dists-exp.svg + • export-summs/pc-glm1-dists.svg + • export-summs/pc-lm1-dists-scale.svg + • export-summs/pc-lm1-dists.svg + • export-summs/pc-lm2-dists-inner-ci-scale.svg + • export-summs/pc-lm2-dists-inner-ci.svg + • export-summs/pc-lm2-dists.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'brms', 'quantreg', 'rstanarm' + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘quantreg’ + ``` + +# karel + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/mpru/karel +* Source code: https://github.com/cran/karel +* Date/Publication: 2022-03-26 21:50:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "karel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘karel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: acciones + > ### Title: Acciones que Karel puede realizar + > ### Aliases: acciones avanzar girar_izquierda poner_coso juntar_coso + > ### girar_derecha darse_vuelta + > + > ### ** Examples + > + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(karel) + > + > test_check("karel") + [ FAIL 2 | WARN 2 | SKIP 0 | PASS 78 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + + [ FAIL 2 | WARN 2 | SKIP 0 | PASS 78 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘gifski’ + All declared Imports should be used. + ``` + +# kDGLM + +
+ +* Version: 1.2.7 +* GitHub: https://github.com/silvaneojunior/kDGLM +* Source code: https://github.com/cran/kDGLM +* Date/Publication: 2025-03-20 01:00:03 UTC +* Number of recursive dependencies: 133 + +Run `revdepcheck::cloud_details(, "kDGLM")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘kDGLM-Ex.R’ failed + The error most likely occurred in: + + > ### Name: forecast.fitted_dlm + > ### Title: Auxiliary function for forecasting + > ### Aliases: forecast.fitted_dlm + > + > ### ** Examples + > + > + ... + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the kDGLM package. + Please report the issue at . + Scale for y is already present. + Adding another scale for y, which will replace the existing scale. + Error in pm[[2]] : subscript out of bounds + Calls: forecast ... lapply -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘example1.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.9Mb + sub-directories of 1Mb or more: + doc 9.9Mb + ``` + +# kerntools + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/elies-ramon/kerntools +* Source code: https://github.com/cran/kerntools +* Date/Publication: 2025-02-19 15:10:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "kerntools")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Kernel-PCA-and-CIA.Rmd’ using rmarkdown + --- finished re-building ‘Kernel-PCA-and-CIA.Rmd’ + + --- re-building ‘Kernel-functions.Rmd’ using rmarkdown + --- finished re-building ‘Kernel-functions.Rmd’ + + --- re-building ‘kerntools.Rmd’ using rmarkdown + ``` + +# khroma + +
+ +* Version: 1.16.0 +* GitHub: NA +* Source code: https://github.com/cran/khroma +* Date/Publication: 2025-02-25 17:40:05 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "khroma")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘khroma-Ex.R’ failed + The error most likely occurred in: + + > ### Name: scale_colour_land + > ### Title: AVHRR Global Land Cover Classification Color Scheme for + > ### 'ggplot2' and 'ggraph' + > ### Aliases: scale_colour_land scale_color_land scale_fill_land + > ### scale_edge_colour_land scale_edge_color_land scale_edge_fill_land + > + > ### ** Examples + ... + 22. └─vctrs::vec_default_cast(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_cast(...) + 27. └─vctrs::stop_incompatible_type(...) + 28. └─vctrs:::stop_incompatible(...) + 29. └─vctrs:::stop_vctrs(...) + 30. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# kitesquare + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/HUGLeipzig/kitesquare +* Source code: https://github.com/cran/kitesquare +* Date/Publication: 2025-03-20 13:50:09 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "kitesquare")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘kitesquare-Ex.R’ failed + The error most likely occurred in: + + > ### Name: kitesquare + > ### Title: Create a kite-square plot + > ### Aliases: kitesquare + > + > ### ** Examples + > + > df <- dplyr::tibble( + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# KMunicate + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/ellessenne/KMunicate-package +* Source code: https://github.com/cran/KMunicate +* Date/Publication: 2024-05-16 11:50:08 UTC +* Number of recursive dependencies: 172 + +Run `revdepcheck::cloud_details(, "KMunicate")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(KMunicate) + Loading required package: survival + > + > test_check("KMunicate") + [ FAIL 4 | WARN 8 | SKIP 0 | PASS 823 ] + + ... + ▆ + 1. ├─testthat::expect_s3_class(...) at test-output.R:50:3 + 2. │ └─testthat::quasi_label(enquo(object), arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. └─KMunicate::KMunicate(fit = KM, time_scale = time_scale, .theme = ggplot2::theme_bw()) + 5. └─checkmate::reportAssertions(arg_checks) + + [ FAIL 4 | WARN 8 | SKIP 0 | PASS 823 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘KMunicate.Rmd’ using rmarkdown + ``` + +# L2E + +
+ +* Version: 2.0 +* GitHub: NA +* Source code: https://github.com/cran/L2E +* Date/Publication: 2022-09-08 21:13:00 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "L2E")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘l2e-intro.Rmd’ using rmarkdown + + Quitting from l2e-intro.Rmd:278-294 [unnamed-chunk-14] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'l2e-intro.Rmd' failed with diagnostics: + Can't combine `..1` and `..2` . + --- failed re-building ‘l2e-intro.Rmd’ + + SUMMARY: processing the following file failed: + ‘l2e-intro.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘robustbase’ + All declared Imports should be used. + ``` + +# LabApplStat + +
+ +* Version: 1.4.4 +* GitHub: NA +* Source code: https://github.com/cran/LabApplStat +* Date/Publication: 2022-10-10 09:40:02 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "LabApplStat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘LabApplStat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: DD + > ### Title: Design diagram for a linear model + > ### Aliases: DD + > ### Keywords: design manip + > + > ### ** Examples + > + ... + Backtrace: + ▆ + 1. ├─base::plot(myDD) + 2. └─LabApplStat:::plot.designDiagram(myDD) + 3. └─ggraph::geom_node_text(aes(x = x, y = y, label = text), parse = TRUE) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +# lans2r + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/KopfLab/lans2r +* Source code: https://github.com/cran/lans2r +* Date/Publication: 2023-02-19 07:20:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "lans2r")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + + ... + 4. ├─methods::is(plot_maps(data), "ggplot") + 5. └─lans2r::plot_maps(data) + 6. └─ggplot2::scale_fill_continuous(low = color_scale[1], high = color_scale[2]) + 7. └─ggplot2:::scale_backward_compatibility(...) + 8. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 9. └─rlang::abort(...) + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 143 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘lans2r-calculate.Rmd’ using rmarkdown + ``` + +# lares + +
+ +* Version: 5.2.13 +* GitHub: https://github.com/laresbernardo/lares +* Source code: https://github.com/cran/lares +* Date/Publication: 2025-02-19 15:20:02 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "lares")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lares-Ex.R’ failed + The error most likely occurred in: + + > ### Name: clusterKmeans + > ### Title: Automated K-Means Clustering + PCA/t-SNE + > ### Aliases: clusterKmeans + > + > ### ** Examples + > + > Sys.unsetenv("LARES_FONT") # Temporal + ... + > + > # If dataset has +5 columns, feel free to reduce dimenstionalities + > # with reduce_pca() or reduce_tsne() first + > + > # Find optimal k + > check_k <- clusterKmeans(df, limit = 10) + >>> Removed duplicate obserations: 1 + Error: object properties are invalid: + - @family must be or , not + Execution halted + ``` + +# latentcor + +
+ +* Version: 2.0.1 +* GitHub: NA +* Source code: https://github.com/cran/latentcor +* Date/Publication: 2022-09-05 20:50:02 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "latentcor")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘latentcor-Ex.R’ failed + The error most likely occurred in: + + > ### Name: latentcor + > ### Title: Estimate latent correlation for mixed types. + > ### Aliases: latentcor + > + > ### ** Examples + > + > # Example 1 - truncated data type, same type for all variables + ... + > R_approx = latentcor(X = X, types = "tru", method = "approx")$R + > proc.time() - start_time + user system elapsed + 0.025 0.000 0.024 + > # Heatmap for latent correlation matrix. + > Heatmap_R_approx = latentcor(X = X, types = "tru", method = "approx", + + showplot = TRUE)$plotR + Error in pm[[2]] : subscript out of bounds + Calls: latentcor ... %>% -> layout -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) evaluation.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) evaluation.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly + ... + checkRd: (-1) gen_data.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) gen_data.Rd:36-37: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) get_types.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) interpolation.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) interpolation.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) latentcor.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) latentcor.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) latentcor.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) latentcor.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) latentcor.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# latrend + +
+ +* Version: 1.6.1 +* GitHub: https://github.com/philips-software/latrend +* Source code: https://github.com/cran/latrend +* Date/Publication: 2024-05-15 11:50:02 UTC +* Number of recursive dependencies: 237 + +Run `revdepcheck::cloud_details(, "latrend")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘latrend-Ex.R’ failed + The error most likely occurred in: + + > ### Name: qqPlot + > ### Title: Quantile-quantile plot + > ### Aliases: qqPlot + > + > ### ** Examples + > + > data(latrendData) + ... + 24. │ └─ggplot2 (local) FUN(X[[i]], ...) + 25. │ └─self$draw_group(group, panel_params, coord, ...) + 26. │ └─ggplot2 (local) draw_group(...) + 27. │ └─ggplot2 (local) draw_group(..., self = self) + 28. └─base::.handleSimpleError(...) + 29. └─rlang (local) h(simpleError(msg, call)) + 30. └─handlers[[1L]](cnd) + 31. └─cli::cli_abort(...) + 32. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(latrend) + > + > test_check('latrend') + [ FAIL 6 | WARN 1 | SKIP 12 | PASS 2345 ] + + ══ Skipped tests (12) ══════════════════════════════════════════════════════════ + ... + ── Failure ('test-models.R:206:3'): plotMetric ───────────────────────────────── + `.` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + Backtrace: + ▆ + 1. ├─... %>% expect_is("gg") at test-models.R:206:3 + 2. └─testthat::expect_is(., "gg") + + [ FAIL 6 | WARN 1 | SKIP 12 | PASS 2345 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘demo.Rmd’ using rmarkdown + ``` + +# lcars + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/leonawicz/lcars +* Source code: https://github.com/cran/lcars +* Date/Publication: 2024-09-11 22:52:42 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "lcars")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lcars-Ex.R’ failed + The error most likely occurred in: + + > ### Name: lcars_border + > ### Title: LCARS border plot + > ### Aliases: lcars_border + > + > ### ** Examples + > + > lcars_border() + ... + > + > len_frac <- c(0.3, 0.5, 0.2, 0.4, 0.3, 0.2, 0.1, 0.3) + > n_seg <- c(1, 2, 0, 8) + > + > library(ggplot2) + > g <- ggplot(iris, aes(Sepal.Length, Sepal.Width, color = Species)) + + + geom_point() + facet_wrap(~Species, 2) + theme_lcars_light() + Error: object properties are invalid: + - @family must be or , not + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘lcars.Rmd’ using rmarkdown + + Quitting from lcars.Rmd:20-54 [ex-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! object properties are invalid: + - @family must be or , not + --- + ... + Error: processing vignette 'lcars.Rmd' failed with diagnostics: + object properties are invalid: + - @family must be or , not + --- failed re-building ‘lcars.Rmd’ + + SUMMARY: processing the following file failed: + ‘lcars.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# LDATree + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/Moran79/LDATree +* Source code: https://github.com/cran/LDATree +* Date/Publication: 2024-10-31 08:10:07 UTC +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "LDATree")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘LDATree-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Treee + > ### Title: Classification Trees with Uncorrelated Linear Discriminant + > ### Analysis Terminal Nodes + > ### Aliases: Treee + > + > ### ** Examples + > + > fit <- Treee(datX = iris[, -5], response = iris[, 5], verbose = FALSE) + > # Use cross-validation to prune the tree + > fitCV <- Treee(datX = iris[, -5], response = iris[, 5], pruneMethod = "post", verbose = FALSE) + > head(predict(fit, iris)) # prediction + [1] "setosa" "setosa" "setosa" "setosa" "setosa" "setosa" + > plot(fit) # plot the overall tree + > plot(fit, datX = iris[, -5], response = iris[, 5], node = 1) # plot a certain node + Error: Can't find property @i + Execution halted + ``` + +# ldsr + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/ntthung/ldsr +* Source code: https://github.com/cran/ldsr +* Date/Publication: 2020-05-04 14:40:09 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "ldsr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ldsr.Rmd’ using rmarkdown + + Quitting from ldsr.Rmd:85-105 [unnamed-chunk-6] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ldsr.Rmd' failed with diagnostics: + Can't add `e2` to a object. + --- failed re-building ‘ldsr.Rmd’ + + SUMMARY: processing the following file failed: + ‘ldsr.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +# legendry + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/teunbrand/legendry +* Source code: https://github.com/cran/legendry +* Date/Publication: 2025-03-04 22:50:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "legendry")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘legendry-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compose_crux + > ### Title: Compose guides in a cross + > ### Aliases: compose_crux + > + > ### ** Examples + > + > # Roughly recreating a colour bar with extra text on top and bottom + ... + 13. └─legendry (local) draw(..., self = self) + 14. └─self$setup_elements(params, self$elements, theme) + 15. └─legendry (local) setup_elements(...) + 16. └─Guide$setup_elements(params, elements, theme) + 17. └─ggplot2 (local) setup_elements(...) + 18. └─base::lapply(elements[is_char], calc_element, theme = theme) + 19. └─ggplot2 (local) FUN(X[[i]], ...) + 20. └─cli::cli_abort(...) + 21. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + • primitive-fence/primitive-fence-radial.svg + • primitive-labels/primitive-labels-radial.svg + • primitive-line/primitive-line-radial.svg + • primitive-segments/primitive-segments-radial.svg + • primitive-spacer/primitive-spacer-radial.svg + • primitive-ticks/primitive-ticks-radial.svg + • primitive-title/primitive-title-radial.svg + • scale-dendro/scale-dendro-radial.svg + Error: Test failures + Execution halted + ``` + +# lemon + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/stefanedwards/lemon +* Source code: https://github.com/cran/lemon +* Date/Publication: 2024-11-10 18:20:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "lemon")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lemon-Ex.R’ failed + The error most likely occurred in: + + > ### Name: annotate_y_axis + > ### Title: Annotations on the axis + > ### Aliases: annotate_y_axis annotate_x_axis + > + > ### ** Examples + > + > library(ggplot2) + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(lemon) + > + > + > if (TRUE) { + + test_check("lemon") + + } #else { + ... + 4. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 5. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 6. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 3 | WARN 13 | SKIP 3 | PASS 126 ] + Deleting unused snapshots: + • facet/facet-rep-wrap-spacing.svg + • facet_aux/facet-rep-wrap.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘capped-axes.Rmd’ using rmarkdown + ``` + +# LexisPlotR + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/ottlngr/LexisPlotR +* Source code: https://github.com/cran/LexisPlotR +* Date/Publication: 2020-01-12 13:30:03 UTC +* Number of recursive dependencies: 64 + +Run `revdepcheck::cloud_details(, "LexisPlotR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘LexisPlotR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: lexis_age + > ### Title: Emphasize a certain age in Lexis grid + > ### Aliases: lexis_age + > + > ### ** Examples + > + > library(LexisPlotR) + > lexis <- lexis_grid(year_start = 1900, year_end = 1905, age_start = 0, age_end = 5) + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the LexisPlotR package. + Please report the issue to the authors. + > lexis <- lexis_age(lg = lexis, age = 3) + Error: Can't get S7 properties with `$`. Did you mean `gg@layout`? + Execution halted + ``` + +# lfproQC + +
+ +* Version: 1.4.0 +* GitHub: https://github.com/kabilansbio/lfproQC +* Source code: https://github.com/cran/lfproQC +* Date/Publication: 2024-10-10 13:10:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "lfproQC")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lfproQC-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Boxplot_data + > ### Title: Creating Boxplot for a dataset + > ### Aliases: Boxplot_data + > + > ### ** Examples + > + > Boxplot_data(yeast_data) + Using Majority protein IDs as id variables + Warning: Removed 269 rows containing non-finite outside the scale range + (`stat_boxplot()`). + Error in pm[[2]] : subscript out of bounds + Calls: Boxplot_data -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘user_guide.Rmd’ using rmarkdown + + Quitting from user_guide.Rmd:54-56 [unnamed-chunk-8] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'user_guide.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘user_guide.Rmd’ + + SUMMARY: processing the following file failed: + ‘user_guide.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# lgpr + +
+ +* Version: 1.2.4 +* GitHub: https://github.com/jtimonen/lgpr +* Source code: https://github.com/cran/lgpr +* Date/Publication: 2023-09-24 06:50:02 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "lgpr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # Short tests + > # - focus on testing that everything runs + > # - should take less than minute + > library(testthat) + > library(lgpr) + Attached lgpr 1.2.4, using rstan 2.32.7. Type ?lgpr to get started. + > + ... + ── Failure ('test_misc-invgamma.R:34:3'): plotting the inverse gamma distribution works ── + `c1` not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test_misc-invgamma.R:35:3'): plotting the inverse gamma distribution works ── + `c2` not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 2 | WARN 2 | SKIP 0 | PASS 446 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 153.2Mb + sub-directories of 1Mb or more: + R 1.5Mb + libs 151.3Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) prior_to_num.Rd:13: Lost braces; missing escapes or markup? + 13 | {'uniform', 'normal', 'student-t', 'gamma', 'inv-gamma', 'log-normal'} + | ^ + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# LightLogR + +
+ +* Version: 0.5.3 +* GitHub: https://github.com/tscnlab/LightLogR +* Source code: https://github.com/cran/LightLogR +* Date/Publication: 2025-02-24 18:10:01 UTC +* Number of recursive dependencies: 170 + +Run `revdepcheck::cloud_details(, "LightLogR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘LightLogR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: count_difftime + > ### Title: Counts the Time differences (epochs) per group (in a grouped + > ### dataset) + > ### Aliases: count_difftime + > + > ### ** Examples + > + ... + 21. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 22. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 23. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 24. │ └─base::withCallingHandlers(...) + 25. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 26. ├─S7::S7_dispatch() + 27. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 28. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 29. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ── Error ('test-photoperiod.R:86:3'): gg_photoperiod works ───────────────────── + Error in `gg_photoperiod(gg_day(sample.data.environment), coordinates)`: ggplot_obj must be a ggplot object + Backtrace: + ▆ + 1. └─LightLogR::gg_photoperiod(gg_day(sample.data.environment), coordinates) at test-photoperiod.R:86:3 + 2. └─base::stopifnot(...) + + [ FAIL 2 | WARN 0 | SKIP 2 | PASS 290 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.0Mb + sub-directories of 1Mb or more: + extdata 2.9Mb + help 1.4Mb + ``` + +# likelihoodTools + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/ajpelu/likelihoodTools +* Source code: https://github.com/cran/likelihoodTools +* Date/Publication: 2025-03-04 12:40:02 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "likelihoodTools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + `expected`: TRUE + ── Failure ('test-mle_plot_residuals.R:131:3'): mle_plot_residuals returns a ggplot object ── + inherits(p, "gg") is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 103 ] + Error: Test failures + Execution halted + ``` + +# lionfish + +
+ +* Version: 1.0.27 +* GitHub: NA +* Source code: https://github.com/cran/lionfish +* Date/Publication: 2025-03-13 20:50:02 UTC +* Number of recursive dependencies: 126 + +Run `revdepcheck::cloud_details(, "lionfish")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Bioprocess-Optimization.Rmd’ using knitr + --- finished re-building ‘Bioprocess-Optimization.Rmd’ + + --- re-building ‘General-interactivity.Rmd’ using knitr + --- finished re-building ‘General-interactivity.Rmd’ + + --- re-building ‘Market-segmentation.Rmd’ using knitr + + Quitting from Market-segmentation.Rmd:81-132 [intro figure 1] + ... + --- failed re-building ‘Market-segmentation.Rmd’ + + --- re-building ‘Plot-objects.Rmd’ using knitr + --- finished re-building ‘Plot-objects.Rmd’ + + SUMMARY: processing the following file failed: + ‘Market-segmentation.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# listdown + +
+ +* Version: 0.5.7 +* GitHub: https://github.com/kaneplusplus/listdown +* Source code: https://github.com/cran/listdown +* Date/Publication: 2023-04-03 00:30:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "listdown")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.r’ + Running the tests in ‘tests/testthat.r’ failed. + Complete output: + > library(testthat) + > library(listdown) + > + > test_check("listdown") + [ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ] + + ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ + ... + y[1]: "Linear:\n- gg:ggplot\nNon Linear:\n- gg:ggplot\nOutlier Vertical:\n- gg:g + y[1]: gplot\nOutlier Horizontal:\n- gg:ggplot\na:\n b:\n - numeric\n '':\n - + y[1]: numeric\n" + ── Failure ('test-cc-dendro.r:20:3'): Dendrograms work. ──────────────────────── + ld_cc_dendro(cc_list) not equal to read_reference("cc-dendro.rds"). + 4 string mismatches + + [ FAIL 2 | WARN 0 | SKIP 1 | PASS 34 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘workflowr’ + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) ld_build_html_site.Rd:41: Lost braces + 41 | directory specified by `rmd_dir`. Note that this is an {{rmarkdown}} + | ^ + checkRd: (-1) ld_create_doc.Rd:29: Lost braces + 29 | directory specified by `rmd_dir`. Note that this is an {{rmarkdown}} + | ^ + ``` + +# LMD + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/shubhra-opensource/LMD +* Source code: https://github.com/cran/LMD +* Date/Publication: 2022-09-20 09:56:07 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "LMD")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘LMD-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_lmd + > ### Title: LMD Plot + > ### Aliases: plot_lmd + > ### Keywords: LMD PF Residue + > + > ### ** Examples + > + ... + > y = (2 / 3 )* sin(x * 30) + (2 / 3) * sin(x * 17.5) + (4 / 5) *cos(x * 2) + > plot_lmd(lmd(y)) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the LMD package. + Please report the issue at + . + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Getting_Started_with_LMD.Rmd’ using rmarkdown + ``` + +# lmls + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/hriebl/lmls +* Source code: https://github.com/cran/lmls +* Date/Publication: 2024-11-20 22:20:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "lmls")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘lmls.Rmd’ using rmarkdown + + Quitting from lmls.Rmd:288-303 [abdom-mcmc-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'lmls.Rmd' failed with diagnostics: + Can't add `p2` to a object. + --- failed re-building ‘lmls.Rmd’ + + SUMMARY: processing the following file failed: + ‘lmls.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# lnmixsurv + +
+ +* Version: 3.1.6 +* GitHub: NA +* Source code: https://github.com/cran/lnmixsurv +* Date/Publication: 2024-09-03 15:20:08 UTC +* Number of recursive dependencies: 196 + +Run `revdepcheck::cloud_details(, "lnmixsurv")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + + Error in `pm[[2]]`: subscript out of bounds + Backtrace: + ▆ + 1. └─testthat::expect_snapshot(plot(mod1)) at test-survival_ln_mixture_em-methods.R:25:3 + 2. └─rlang::cnd_signal(state$error) + + [ FAIL 1 | WARN 0 | SKIP 7 | PASS 50 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘compare.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.2Mb + sub-directories of 1Mb or more: + doc 4.0Mb + libs 5.8Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘purrr’ ‘readr’ + All declared Imports should be used. + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘rstanarm’ + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# LongDat + +
+ +* Version: 1.1.3 +* GitHub: https://github.com/CCY-dev/LongDat +* Source code: https://github.com/cran/LongDat +* Date/Publication: 2024-11-19 03:20:07 UTC +* Number of recursive dependencies: 139 + +Run `revdepcheck::cloud_details(, "LongDat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘LongDat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: cuneiform_plot + > ### Title: Create cuneiform plots of result table from longdat_disc() or + > ### longdat_cont() + > ### Aliases: cuneiform_plot + > + > ### ** Examples + > + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘LongDat_cont_tutorial.Rmd’ using rmarkdown + Warning in eng_r(options) : + Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason: + Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. + + Warning in eng_r(options) : + Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason: + Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. + + ... + + Error: processing vignette 'LongDat_disc_tutorial.Rmd' failed with diagnostics: + Can't add `e2` to a object. + --- failed re-building ‘LongDat_disc_tutorial.Rmd’ + + SUMMARY: processing the following files failed: + ‘LongDat_cont_tutorial.Rmd’ ‘LongDat_disc_tutorial.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# longevity + +
+ +* Version: 1.2 +* GitHub: https://github.com/lbelzile/longevity +* Source code: https://github.com/cran/longevity +* Date/Publication: 2025-05-12 02:10:02 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "longevity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘longevity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot.elife_par + > ### Title: Goodness-of-fit plots for parametric models + > ### Aliases: autoplot.elife_par plot.elife_par + > + > ### ** Examples + > + > set.seed(1234) + ... + + thresh = 0, + + event = ifelse(samp$rcens, 0L, 1L), + + type = "right", + + family = "exp", + + export = TRUE) + > plot(fitted, plot.type = "ggplot") + Error in get("print.ggplot", envir = loadNamespace("ggplot2")) : + object 'print.ggplot' not found + Calls: plot -> plot.elife_par -> lapply -> match.fun -> get + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("longevity") + + } + + test-S3methods.R.............. 0 tests + test-S3methods.R.............. 0 tests + ... + test-S3methods.R.............. 0 tests + test-S3methods.R.............. 0 tests + test-S3methods.R.............. 0 tests + test-S3methods.R.............. 0 tests + test-S3methods.R.............. 0 tests + test-S3methods.R.............. 0 tests + test-S3methods.R.............. 0 tests Error in get("print.ggplot", envir = loadNamespace("ggplot2")) : + object 'print.ggplot' not found + Calls: ... plot -> plot.elife_par -> lapply -> match.fun -> get + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.0Mb + sub-directories of 1Mb or more: + data 7.0Mb + libs 2.3Mb + ``` + +# LorenzRegression + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/AlJacq/LorenzRegression +* Source code: https://github.com/cran/LorenzRegression +* Date/Publication: 2024-10-11 16:50:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "LorenzRegression")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘LorenzRegression-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Lorenz.Reg + > ### Title: Fits a Lorenz regression + > ### Aliases: Lorenz.Reg + > + > ### ** Examples + > + > data(Data.Incomes) + ... + 24. └─vctrs::vec_default_cast(...) + 25. ├─base::withRestarts(...) + 26. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 27. │ └─base (local) doWithOneRestart(return(expr), restart) + 28. └─vctrs::stop_incompatible_cast(...) + 29. └─vctrs::stop_incompatible_type(...) + 30. └─vctrs:::stop_incompatible(...) + 31. └─vctrs:::stop_vctrs(...) + 32. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# LorMe + +
+ +* Version: 1.2.1 +* GitHub: NA +* Source code: https://github.com/cran/LorMe +* Date/Publication: 2025-03-14 09:10:02 UTC +* Number of recursive dependencies: 208 + +Run `revdepcheck::cloud_details(, "LorMe")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘LorMe-Ex.R’ failed + The error most likely occurred in: + + > ### Name: differential_bar + > ### Title: Generate Differential Bar Plot and Error bar Plot + > ### Aliases: differential_bar + > + > ### ** Examples + > + > { + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.5Mb + sub-directories of 1Mb or more: + data 7.0Mb + ``` + +# lpdensity + +
+ +* Version: 2.5 +* GitHub: NA +* Source code: https://github.com/cran/lpdensity +* Date/Publication: 2024-10-06 06:50:02 UTC +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "lpdensity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lpdensity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: lpdensity + > ### Title: Local Polynomial Density Estimation and Inference + > ### Aliases: lpdensity + > + > ### ** Examples + > + > # Generate a random sample + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# lphom + +
+ +* Version: 0.3.5-6 +* GitHub: NA +* Source code: https://github.com/cran/lphom +* Date/Publication: 2025-04-11 22:00:06 UTC +* Number of recursive dependencies: 28 + +Run `revdepcheck::cloud_details(, "lphom")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lphom-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.lphom + > ### Title: Graphical representation of a RxC ecological inference (vote + > ### transfer) matrix + > ### Aliases: plot.lphom + > + > ### ** Examples + > + ... + Backtrace: + ▆ + 1. ├─base::plot(mt.ns, show.plot = FALSE) + 2. └─lphom:::plot.lphom(mt.ns, show.plot = FALSE) + 3. └─lphom (local) pintar_con(...) + 4. └─ggplot2::scale_fill_continuous(...) + 5. └─ggplot2:::scale_backward_compatibility(...) + 6. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 7. └─rlang::abort(...) + Execution halted + ``` + +# lspartition + +
+ +* Version: 0.5 +* GitHub: NA +* Source code: https://github.com/cran/lspartition +* Date/Publication: 2025-04-29 10:30:06 UTC +* Number of recursive dependencies: 32 + +Run `revdepcheck::cloud_details(, "lspartition")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘lspartition-Ex.R’ failed + The error most likely occurred in: + + > ### Name: lsprobust.plot + > ### Title: Graphic Presentation of Results for 'lspartition' Package + > ### Aliases: lsprobust.plot + > + > ### ** Examples + > + > x <- runif(500) + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# LSTS + +
+ +* Version: 2.1 +* GitHub: https://github.com/pachadotdev/LSTS +* Source code: https://github.com/cran/LSTS +* Date/Publication: 2021-07-29 16:00:02 UTC +* Number of recursive dependencies: 46 + +Run `revdepcheck::cloud_details(, "LSTS")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘LSTS-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ts.diag + > ### Title: Diagnostic Plots for Time Series fits + > ### Aliases: ts.diag + > + > ### ** Examples + > + > ts.diag(malleco) + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(LSTS) + > + > test_check("LSTS") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘Rdpack’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) LS.kalman.Rd:65: Escaped LaTeX specials: \& + checkRd: (-1) spectral.density.Rd:55: Escaped LaTeX specials: \& + ``` + +# LSX + +
+ +* Version: 1.4.3 +* GitHub: https://github.com/koheiw/LSX +* Source code: https://github.com/cran/LSX +* Date/Publication: 2025-04-22 04:10:06 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "LSX")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > require(testthat) + Loading required package: testthat + > require(quanteda) + Loading required package: quanteda + Package version: 4.2.0 + Unicode version: 15.1 + ... + ── Failure ('test-textplot.R:79:5'): textplot_components() works ─────────────── + class(textplot_components(lss_svd, 3, scale = "relative")) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test-textplot.R:104:5'): textplot_terms works even when frequency has zeros (#85) ── + class(textplot_terms(lss)) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 20 | WARN 0 | SKIP 10 | PASS 215 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2096 marked UTF-8 strings + ``` + +# ltertools + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/lter/ltertools +* Source code: https://github.com/cran/ltertools +* Date/Publication: 2025-03-26 18:30:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "ltertools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-site_timeline.R:15:3'): Outputs are correct ────────────────── + class(time_gg) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 36 ] + Error: Test failures + Execution halted + ``` + +# maicplus + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/hta-pharma/maicplus +* Source code: https://github.com/cran/maicplus +* Date/Publication: 2025-02-21 16:00:02 UTC +* Number of recursive dependencies: 141 + +Run `revdepcheck::cloud_details(, "maicplus")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘maicplus-Ex.R’ failed + The error most likely occurred in: + + > ### Name: basic_kmplot2 + > ### Title: Basic Kaplan Meier (KM) plot function using ggplot + > ### Aliases: basic_kmplot2 + > + > ### ** Examples + > + > library(survival) + ... + > + > basic_kmplot2(kmlist, kmlist_name) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggpubr package. + Please report the issue at . + Warning: Ignoring unknown labels: + • `fill = "Treatment"` + Error: Can't get S7 properties with `$`. Did you mean `g@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > pkg_name <- "maicplus" + > library(pkg_name, character.only = TRUE) + > testthat::test_check(pkg_name) + result pvalue + "-0.17[-0.61; 0.28]" "0.535" + NULL + NULL + ... + + [ FAIL 1 | WARN 0 | SKIP 16 | PASS 85 ] + Deleting unused snapshots: + • matching/default-weights-ggplot.svg + • matching/plot-weights-base-scaled-false.svg + • plot_km2/kmplot2-all.svg + • plot_km2/kmplot2-by-am.svg + • plot_km2/kmplot2-normalize-by-trial.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘anchored_binary.Rmd’ using rmarkdown + --- finished re-building ‘anchored_binary.Rmd’ + + --- re-building ‘anchored_survival.Rmd’ using rmarkdown + --- finished re-building ‘anchored_survival.Rmd’ + + --- re-building ‘calculating_weights.Rmd’ using rmarkdown + ``` + +# malariaAtlas + +
+ +* Version: 1.6.3 +* GitHub: https://github.com/malaria-atlas-project/malariaAtlas +* Source code: https://github.com/cran/malariaAtlas +* Date/Publication: 2024-08-26 08:20:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "malariaAtlas")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘overview.Rmd’ using rmarkdown + + Quitting from overview.Rmd:199-201 [unnamed-chunk-25] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + + Error: processing vignette 'overview.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘overview.Rmd’ + + SUMMARY: processing the following file failed: + ‘overview.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# manydata + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/globalgov/manydata +* Source code: https://github.com/cran/manydata +* Date/Publication: 2025-03-21 16:40:01 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "manydata")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(manydata) + Loading required package: cli + Loading required package: dplyr + + Attaching package: 'dplyr' + + ... + ── Failure ('test_compare.R:6:3'): plot for compare_categories returns the correct output format ── + `db` has length 1, not length 11. + ── Failure ('test_compare.R:48:3'): compare_overlap() and return the correct output format ── + `pl` has type 'object', not 'list'. + ── Failure ('test_compare.R:60:3'): compare_missing() and plot_missing() returns the correct output format ── + `pl` has type 'object', not 'list'. + + [ FAIL 5 | WARN 4 | SKIP 3 | PASS 105 ] + Error: Test failures + Execution halted + ``` + +# manymodelr + +
+ +* Version: 0.3.9 +* GitHub: https://github.com/Nelson-Gon/manymodelr +* Source code: https://github.com/cran/manymodelr +* Date/Publication: 2025-03-20 07:20:02 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "manymodelr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(manymodelr) + Loading required package: caret + Loading required package: ggplot2 + Loading required package: lattice + Loading required package: Metrics + + ... + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. ├─unique(ggplot_build(full_plot_1)$data[[2]]$label) %in% ... + 5. ├─base::unique(ggplot_build(full_plot_1)$data[[2]]$label) + 6. ├─ggplot_build(full_plot_1)$data + 7. └─S7:::`$.S7_object`(ggplot_build(full_plot_1), data) + + [ FAIL 1 | WARN 16 | SKIP 10 | PASS 87 ] + Error: Test failures + Execution halted + ``` + +* checking whether package ‘manymodelr’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘manymodelr’ + See ‘/tmp/workdir/manymodelr/new/manymodelr.Rcheck/00install.out’ for details. + ``` + +# manynet + +
+ +* Version: 1.3.2 +* GitHub: https://github.com/stocnet/manynet +* Source code: https://github.com/cran/manynet +* Date/Publication: 2024-11-05 20:50:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "manynet")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘manynet-Ex.R’ failed + The error most likely occurred in: + + > ### Name: make_play + > ### Title: Making diffusion models on networks + > ### Aliases: make_play play_diffusion play_diffusions + > + > ### ** Examples + > + > smeg <- generate_smallworld(15, 0.025) + ... + ! Only know how to add and/or objects + Backtrace: + ▆ + 1. ├─base::plot(play_diffusion(smeg, recovery = 0.4)) + 2. └─manynet:::plot.diff_model(play_diffusion(smeg, recovery = 0.4)) + 3. └─manynet:::`+.ggplot`(...) + 4. └─patchwork::wrap_plots(e1, e2, ...) + 5. └─cli::cli_abort("Only know how to add {.cls ggplot} and/or {.cls grob} objects") + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(manynet) + > + > test_check("manynet") + Starting 2 test processes + [ FAIL 3 | WARN 0 | SKIP 21 | PASS 548 ] + + ... + 1. ├─base::plot(node_degree(ison_adolescents)) at test-measure_centrality.R:87:3 + 2. └─manynet:::plot.node_measure(node_degree(ison_adolescents)) + 3. └─manynet:::`+.ggplot`(...) + 4. └─patchwork::wrap_plots(e1, e2, ...) + 5. └─cli::cli_abort("Only know how to add {.cls ggplot} and/or {.cls grob} objects") + 6. └─rlang::abort(...) + + [ FAIL 3 | WARN 0 | SKIP 21 | PASS 548 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘Rgraphviz’ + ``` + +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + R 1.5Mb + tutorials 1.9Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 7 marked UTF-8 strings + ``` + +# mapbayr + +
+ +* Version: 0.10.0 +* GitHub: https://github.com/FelicienLL/mapbayr +* Source code: https://github.com/cran/mapbayr +* Date/Publication: 2023-07-17 08:20:02 UTC +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "mapbayr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(mapbayr) + + Attaching package: 'mapbayr' + + The following object is masked from 'package:stats': + + ... + ── Error ('test-vs_nonmem.R:60:3'): plot_phi() works if neta > 9 ─────────────── + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(p)@layout`? + Backtrace: + ▆ + 1. ├─ggplot2::ggplot_build(p)$layout at test-vs_nonmem.R:60:3 + 2. └─S7:::`$.S7_object`(ggplot2::ggplot_build(p), layout) at test-vs_nonmem.R:60:3 + + [ FAIL 4 | WARN 37 | SKIP 4 | PASS 714 ] + Error: Test failures + Execution halted + ``` + +# mapindia + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/shubhamdutta26/mapindia +* Source code: https://github.com/cran/mapindia +* Date/Publication: 2024-11-14 16:10:07 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "mapindia")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘getting_started.Rmd’ using rmarkdown + + Quitting from getting_started.Rmd:48-66 [states-dist] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'getting_started.Rmd' failed with diagnostics: + Can't add `districts` to a object. + --- failed re-building ‘getting_started.Rmd’ + + SUMMARY: processing the following file failed: + ‘getting_started.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# maraca + +
+ +* Version: 0.7.1 +* GitHub: https://github.com/AstraZeneca/maraca +* Source code: https://github.com/cran/maraca +* Date/Publication: 2025-01-13 14:10:09 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "maraca")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘maraca-Ex.R’ failed + The error most likely occurred in: + + > ### Name: cumulative_plot.hce + > ### Title: Generic function to create a plot showing the components used in + > ### calculating win odds (wins and ties) cumulated for all outcomes + > ### directly from an hce object. Check the vignette "Maraca Plots - + > ### Plotting win odds" for more details. + > ### Aliases: cumulative_plot.hce + > + ... + 12. └─base_ops[[.Generic]](e1, e2) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 15. └─ggplot2:::add_ggplot(e1, e2, e2name) + 16. └─ggplot2::ggplot_add(object, p, objectname) + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘faq.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.6Mb + sub-directories of 1Mb or more: + doc 6.5Mb + ``` + +# marqLevAlg + +
+ +* Version: 2.0.8 +* GitHub: https://github.com/VivianePhilipps/marqLevAlgParallel +* Source code: https://github.com/cran/marqLevAlg +* Date/Publication: 2023-03-22 14:00:05 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "marqLevAlg")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘mla.Rmd’ using rmarkdown + + Quitting from mla.Rmd:366-460 [speedup] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'mla.Rmd' failed with diagnostics: + Can't add `(phlme + ylim(0, 18))` to a object. + --- failed re-building ‘mla.Rmd’ + + SUMMARY: processing the following file failed: + ‘mla.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) marqLevAlg-package.Rd:14: Lost braces; missing escapes or markup? + 14 | (GH^{-1}G). + | ^ + ``` + +# marquee + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/r-lib/marquee +* Source code: https://github.com/cran/marquee +* Date/Publication: 2025-01-20 16:01:56 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "marquee")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘marquee-Ex.R’ failed + The error most likely occurred in: + + > ### Name: element_marquee + > ### Title: ggplot2 theme element supporting marquee syntax + > ### Aliases: element_marquee + > + > ### ** Examples + > + > ## Don't show: + ... + 22. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 23. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 24. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 25. │ └─base::withCallingHandlers(...) + 26. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 27. ├─S7::S7_dispatch() + 28. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 29. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 30. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + + [ FAIL 3 | WARN 2 | SKIP 9 | PASS 72 ] + Deleting unused snapshots: + • grob/marquee_grob.png + • parse/parsed.csv + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘marquee.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.9Mb + sub-directories of 1Mb or more: + doc 2.4Mb + libs 2.6Mb + ``` + +# MARVEL + +
+ +* Version: 1.4.0 +* GitHub: NA +* Source code: https://github.com/cran/MARVEL +* Date/Publication: 2022-10-31 10:22:50 UTC +* Number of recursive dependencies: 228 + +Run `revdepcheck::cloud_details(, "MARVEL")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MARVEL-Ex.R’ failed + The error most likely occurred in: + + > ### Name: PlotValues.PSI + > ### Title: Plot percent spliced-in (PSI) values + > ### Aliases: PlotValues.PSI + > + > ### ** Examples + > + > marvel.demo <- readRDS(system.file("extdata/data", "marvel.demo.rds", package="MARVEL")) + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘MARVEL.Rmd’ using rmarkdown + ``` + +# MASSExtra + +
+ +* Version: 1.2.2 +* GitHub: NA +* Source code: https://github.com/cran/MASSExtra +* Date/Publication: 2023-02-16 07:40:02 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "MASSExtra")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘rationale.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) hr_levels.Rd:9-12: Lost braces + 9 | kernelBiweight <- function(x, mean = 0, sd = 1) { + | ^ + checkRd: (-1) hr_levels.Rd:33-36: Lost braces + 33 | kernelCosine <- function(x, mean = 0, sd = 1) { + | ^ + checkRd: (-1) hr_levels.Rd:41-44: Lost braces + 41 | kernelEpanechnikov <- function(x, mean = 0, sd = 1) { + | ^ + checkRd: (-1) hr_levels.Rd:58-61: Lost braces + ... + | ^ + checkRd: (-1) hr_levels.Rd:86-89: Lost braces + 86 | kernelTricube <- function(x, mean = 0, sd = 1) { + | ^ + checkRd: (-1) hr_levels.Rd:93-96: Lost braces + 93 | kernelTriweight <- function(x, mean = 0, sd = 1) { + | ^ + checkRd: (-1) hr_levels.Rd:100-103: Lost braces + 100 | kernelUniform <- function(x, mean = 0, sd = 1) { + | ^ + ``` + +# maths.genealogy + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/louisaslett/maths.genealogy +* Source code: https://github.com/cran/maths.genealogy +* Date/Publication: 2025-03-06 17:40:10 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "maths.genealogy")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘getting-started.Rmd’ using rmarkdown + + Quitting from getting-started.Rmd:140-142 [unnamed-chunk-8] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `check_subsettable()`: + ! S7 objects are not subsettable. + --- + Backtrace: + ... + + Error: processing vignette 'getting-started.Rmd' failed with diagnostics: + S7 objects are not subsettable. + --- failed re-building ‘getting-started.Rmd’ + + SUMMARY: processing the following file failed: + ‘getting-started.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# matsindf + +
+ +* Version: 0.4.8 +* GitHub: https://github.com/MatthewHeun/matsindf +* Source code: https://github.com/cran/matsindf +* Date/Publication: 2024-02-01 05:10:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "matsindf")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘iris_pca.Rmd’ using rmarkdown + + Quitting from iris_pca.Rmd:86-97 [unnamed-chunk-4] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `as.vector()`: + ! cannot coerce type 'object' to vector of type 'character' + --- + Backtrace: + ... + 65. └─grid:::validDetails.text(x) + 66. ├─base::as.character(x$label) + 67. └─base::as.character.default(x$label) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'iris_pca.Rmd' failed with diagnostics: + cannot coerce type 'object' to vector of type 'character' + --- failed re-building ‘iris_pca.Rmd’ + + --- re-building ‘matsindf.Rmd’ using rmarkdown + ``` + +# MaxWiK + +
+ +* Version: 1.0.5 +* GitHub: NA +* Source code: https://github.com/cran/MaxWiK +* Date/Publication: 2024-11-25 11:40:13 UTC +* Number of recursive dependencies: 55 + +Run `revdepcheck::cloud_details(, "MaxWiK")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘User-Guide.Rmd’ using rmarkdown + # Input data + + ## Data format + + The data format of input should be numerical only in the form of data frame, for example: + + + ``` r + ... + + Error: processing vignette 'User-Guide.Rmd' failed with diagnostics: + Can't add `th` to a object. + --- failed re-building ‘User-Guide.Rmd’ + + SUMMARY: processing the following file failed: + ‘User-Guide.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# MBMethPred + +
+ +* Version: 0.1.4.2 +* GitHub: https://github.com/sharifrahmanie/MBMethPred +* Source code: https://github.com/cran/MBMethPred +* Date/Publication: 2023-09-18 14:10:09 UTC +* Number of recursive dependencies: 139 + +Run `revdepcheck::cloud_details(, "MBMethPred")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(MBMethPred) + > + > test_check("MBMethPred") + y_pred + y_true Group3 SHH Group4 + Group3 1 0 0 + ... + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-BoxPlot.R:8:3'): MakeBoxPlot returns correct type ──────────── + BoxPlot(File = data) has type 'object', not 'list'. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.2Mb + sub-directories of 1Mb or more: + R 3.0Mb + data 7.0Mb + ``` + +# MBNMAdose + +
+ +* Version: 0.5.0 +* GitHub: NA +* Source code: https://github.com/cran/MBNMAdose +* Date/Publication: 2025-02-07 00:40:23 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "MBNMAdose")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘consistencychecking-3.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 6 marked Latin-1 strings + ``` + +# MBNMAtime + +
+ +* Version: 0.2.6 +* GitHub: NA +* Source code: https://github.com/cran/MBNMAtime +* Date/Publication: 2025-01-29 00:10:10 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "MBNMAtime")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘consistencychecking-3.Rmd’ using rmarkdown + ``` + +# mcp + +
+ +* Version: 0.3.4 +* GitHub: https://github.com/lindeloev/mcp +* Source code: https://github.com/cran/mcp +* Date/Publication: 2024-03-17 20:10:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "mcp")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mcp-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_pars + > ### Title: Plot individual parameters + > ### Aliases: plot_pars + > + > ### ** Examples + > + > # Typical usage. demo_fit is an mcpfit object. + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(mcp) + > + > test_check("mcp") + [ FAIL 24 | WARN 2 | SKIP 6 | PASS 749 ] + + ══ Skipped tests (6) ═══════════════════════════════════════════════════════════ + ... + Backtrace: + ▆ + 1. └─mcp:::test_runs(model, ...) at tests/testthat/helper-runs.R:338:7 + 2. └─mcp:::test_plot_pars(fit) at tests/testthat/helper-runs.R:112:7 + 3. └─mcp::plot_pars(fit, type = "dens_overlay") at tests/testthat/helper-runs.R:171:3 + 4. └─S7:::Ops.S7_object(...) + + [ FAIL 24 | WARN 2 | SKIP 6 | PASS 749 ] + Error: Test failures + Execution halted + ``` + +# mcradds + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/kaigu1990/mcradds +* Source code: https://github.com/cran/mcradds +* Date/Publication: 2024-08-30 04:30:01 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "mcradds")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mcradds-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot + > ### Title: Generate a 'ggplot' for Bland-Altman Plot and Regression Plot + > ### Aliases: autoplot autoplot,BAsummary-method autoplot,MCResult-method + > + > ### ** Examples + > + > # Specify the type for difference plot + ... + 3. └─ggplot2::ggplot_build(x) + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 6. └─ggplot2:::plot_theme(plot) + 7. └─ggplot2:::check_theme(theme) + 8. └─base::mapply(...) + 9. └─ggplot2 (local) ``(...) + 10. └─cli::cli_abort(...) + 11. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + 12. └─base::mapply(...) + 13. └─ggplot2 (local) ``(...) + 14. └─cli::cli_abort(...) + 15. └─rlang::abort(...) + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 154 ] + Deleting unused snapshots: + • autoplot/autoplot-basummary-with-relative-diff.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘mcradds.Rmd’ using rmarkdown + + Quitting from mcradds.Rmd:474-482 [unnamed-chunk-35] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'mcradds.Rmd' failed with diagnostics: + The `plot.margin` theme element must be a vector of length 4 + --- failed re-building ‘mcradds.Rmd’ + + SUMMARY: processing the following file failed: + ‘mcradds.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# mcStats + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/mcStats +* Date/Publication: 2020-02-26 06:50:02 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "mcStats")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(mcStats) + > + > test_check("mcStats") + [ FAIL 3 | WARN 2 | SKIP 0 | PASS 5 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + * Removed 420 rows containing missing values or values outside the scale range + (`geom_area()`). + * Removed 442 rows containing missing values or values outside the scale range + (`geom_area()`). + * Removed 184 rows containing missing values or values outside the scale range + (`geom_area()`). + + [ FAIL 3 | WARN 2 | SKIP 0 | PASS 5 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# MDDC + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/niuniular/MDDC +* Source code: https://github.com/cran/MDDC +* Date/Publication: 2025-04-07 22:10:01 UTC +* Number of recursive dependencies: 76 + +Run `revdepcheck::cloud_details(, "MDDC")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + > test_check("MDDC") + [ FAIL 1 | WARN 138 | SKIP 0 | PASS 251 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plot_heatmap.R:14:3'): plot_heatmap generates a ggplot object ── + `plot` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 1 | WARN 138 | SKIP 0 | PASS 251 ] + Error: Test failures + Execution halted + ``` + +# MedLEA + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/MedLEA +* Date/Publication: 2023-03-13 11:30:08 UTC +* Number of recursive dependencies: 64 + +Run `revdepcheck::cloud_details(, "MedLEA")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘MedLEA.Rmd’ using rmarkdown + + Quitting from MedLEA.Rmd:66-75 [example5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'MedLEA.Rmd' failed with diagnostics: + Can't add `p3` to a object. + --- failed re-building ‘MedLEA.Rmd’ + + SUMMARY: processing the following file failed: + ‘MedLEA.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# meme + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/GuangchuangYu/meme +* Source code: https://github.com/cran/meme +* Date/Publication: 2021-04-23 10:00:02 UTC +* Number of recursive dependencies: 64 + +Run `revdepcheck::cloud_details(, "meme")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘meme.Rmd’ using rmarkdown + ``` + +# MendelianRandomization + +
+ +* Version: 0.10.0 +* GitHub: NA +* Source code: https://github.com/cran/MendelianRandomization +* Date/Publication: 2024-04-12 10:10:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "MendelianRandomization")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MendelianRandomization-Ex.R’ failed + The error most likely occurred in: + + > ### Name: mr_plot + > ### Title: Draw a scatter plot of the genetic associations and/or causal + > ### estimates + > ### Aliases: mr_plot mr_plot,MRInput-method mr_plot,MRAll-method + > ### mr_plot,MRMVInput-method + > + > ### ** Examples + > + > mr_plot(mr_input(bx = ldlc, bxse = ldlcse, by = chdlodds, byse = chdloddsse), + + line="egger", orientate = TRUE) + Error in UseMethod("plotly_build") : + no applicable method for 'plotly_build' applied to an object of class "c('ggplot', 'ggplot2::ggplot', 'ggplot2::gg', 'S7_object')" + Calls: mr_plot -> mr_plot -> plotly_build + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.4Mb + sub-directories of 1Mb or more: + R 1.5Mb + libs 4.2Mb + ``` + +# messi + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/umich-cphds/messi +* Source code: https://github.com/cran/messi +* Date/Publication: 2025-01-09 22:40:02 UTC +* Number of recursive dependencies: 31 + +Run `revdepcheck::cloud_details(, "messi")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘messi-Ex.R’ failed + The error most likely occurred in: + + > ### Name: messi + > ### Title: Implementation of Mediation with External Summary Statistic + > ### Information (MESSI) from Boss et al. (2024). + > ### Aliases: messi + > + > ### ** Examples + > + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# metaconfoundr + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/malcolmbarrett/metaconfoundr +* Source code: https://github.com/cran/metaconfoundr +* Date/Publication: 2023-01-17 19:00:09 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "metaconfoundr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘intro-to-metaconfoundr.Rmd’ using rmarkdown + ``` + +# metagam + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/Lifebrain/metagam +* Source code: https://github.com/cran/metagam +* Date/Publication: 2023-05-05 18:20:06 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "metagam")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘dominance.Rmd’ using rmarkdown + ``` + +# MetAlyzer + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/nilsmechtel/MetAlyzer +* Source code: https://github.com/cran/MetAlyzer +* Date/Publication: 2024-12-06 14:00:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "MetAlyzer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MetAlyzer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotly_scatter + > ### Title: Plotly Log2FC Scatter Plot + > ### Aliases: plotly_scatter + > + > ### ** Examples + > + > + ... + Warning: Partial NA coefficients for 2 probe(s) + > + > p_scatter <- plotly_scatter(metalyzer_se) + Warning in geom_rect(data = rects_df, inherit.aes = FALSE, aes(xmin = .data$Start, : + Ignoring unknown aesthetics: text + Warning in geom_point(size = 0.5, aes(text = paste0(.data$Metabolite, "\nClass: ", : + Ignoring unknown aesthetics: text + Error in pm[[2]] : subscript out of bounds + Calls: plotly_scatter -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# metan + +
+ +* Version: 1.19.0 +* GitHub: https://github.com/nepem-ufsc/metan +* Source code: https://github.com/cran/metan +* Date/Publication: 2024-12-15 01:00:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "metan")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘metan_start.Rmd’ using rmarkdown + ``` + +# MetaNet + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/Asa12138/MetaNet +* Source code: https://github.com/cran/MetaNet +* Date/Publication: 2025-04-10 06:30:02 UTC +* Number of recursive dependencies: 174 + +Run `revdepcheck::cloud_details(, "MetaNet")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MetaNet-Ex.R’ failed + The error most likely occurred in: + + > ### Name: as.ggig + > ### Title: Transfer an igraph object to a ggig + > ### Aliases: as.ggig + > + > ### ** Examples + > + > as.ggig(co_net, coors = c_net_layout(co_net)) -> ggig + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +# metanetwork + +
+ +* Version: 0.7.0 +* GitHub: https://github.com/MarcOhlmann/metanetwork +* Source code: https://github.com/cran/metanetwork +* Date/Publication: 2022-12-05 14:10:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "metanetwork")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘metanetwork-Ex.R’ failed + The error most likely occurred in: + + > ### Name: diff_plot + > ### Title: plot difference network + > ### Aliases: diff_plot + > + > ### ** Examples + > + > #on Angola dataset + ... + ℹ Call `igraph::upgrade_graph()` on it to use with the current igraph version. + For now we convert it on the fly... + plotting: X2003_Species - X1986_Species + mode is TL-tsne + beta = 0.05 + Epoch: Iteration #100 error is: 907.373467952717 + Epoch: Iteration #200 error is: 217.111280176298 + Epoch: Iteration #300 error is: 217.23002415391 + Error: C stack usage 9962516 is too close to the limit + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(metanetwork) + + Attaching package: 'metanetwork' + + The following object is masked from 'package:base': + + ... + [ FAIL 1 | WARN 2218 | SKIP 0 | PASS 70 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Error ('test-ggmetanet.R:72:1'): test legend for large networks ───────────── + + Error: C stack usage 9963156 is too close to the limit + + [ FAIL 1 | WARN 2218 | SKIP 0 | PASS 70 ] + Error: Test failures + Execution halted + ``` + +# metaplot + +
+ +* Version: 0.8.4 +* GitHub: NA +* Source code: https://github.com/cran/metaplot +* Date/Publication: 2024-02-18 05:30:10 UTC +* Number of recursive dependencies: 38 + +Run `revdepcheck::cloud_details(, "metaplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘metaplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: densplot.data.frame + > ### Title: Densplot Method for Data Frame + > ### Aliases: densplot.data.frame + > + > ### ** Examples + > + > densplot(Theoph, conc, grid = TRUE ) + ... + Warning: The `` argument of `guides()` cannot be `FALSE`. Use "none" instead as + of ggplot2 3.3.4. + ℹ The deprecated feature was likely used in the metaplot package. + Please report the issue to the authors. + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the metaplot package. + Please report the issue to the authors. + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@data`? + Execution halted + ``` + +# metaquant + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/metaquant +* Date/Publication: 2025-02-11 17:00:02 UTC +* Number of recursive dependencies: 76 + +Run `revdepcheck::cloud_details(, "metaquant")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘metaquant-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotdist + > ### Title: Visualising Densities using Quantiles + > ### Aliases: plotdist + > + > ### ** Examples + > + > #Example dataset of 3-point summaries (min, med, max) for 2 groups + ... + + display.legend = TRUE, + + pooled.dist = TRUE + + ) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the metaquant package. + Please report the issue to the authors. + Error in pm[[2]] : subscript out of bounds + Calls: plotdist -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# MetBrewer + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/MetBrewer +* Date/Publication: 2022-03-21 13:30:02 UTC +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "MetBrewer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MetBrewer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: met.brewer + > ### Title: Met Palette Generator + > ### Aliases: met.brewer + > ### Keywords: colors + > + > ### ** Examples + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# metR + +
+ +* Version: 0.18.1 +* GitHub: https://github.com/eliocamp/metR +* Source code: https://github.com/cran/metR +* Date/Publication: 2025-05-13 06:30:01 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "metR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘metR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: guide_colourstrip + > ### Title: Discretized continuous colour guide + > ### Aliases: guide_colourstrip guide_train.colorstrip guide_geom.colorstrip + > ### guide_colorstrip guide_gengrob.colorstrip + > ### Keywords: internal + > + > ### ** Examples + ... + > library(ggplot2) + > binwidth <- 20 + > data(volcano) + > ggplot(reshape2::melt(volcano), aes(Var1, Var2, z = value)) + geom_contour_fill(binwidth = binwidth) + + + scale_fill_continuous(guide = guide_colourstrip(), breaks = MakeBreaks(binwidth)) + Warning: The S3 guide system was deprecated in ggplot2 3.5.0. + ℹ It has been replaced by a ggproto system that can be extended. + Error in upgradeUnit.default(x) : Not a unit object + Calls: ... -> convertUnit -> upgradeUnit -> upgradeUnit.default + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(metR) + > # library(vdiffr) + > + > on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false"))) + > if (on_cran) data.table::setDTthreads(2) + > + ... + 16. ├─ggplot2::guide_gengrob(params, theme) + 17. └─metR:::guide_gengrob.colorstrip(params, theme) + 18. └─grid::convertWidth(...) + 19. └─grid::convertUnit(...) + 20. ├─grid:::upgradeUnit(x) + 21. └─grid:::upgradeUnit.default(x) + + [ FAIL 3 | WARN 1 | SKIP 19 | PASS 182 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.6Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 2.0Mb + doc 1.8Mb + ``` + +# mFD + +
+ +* Version: 1.0.7 +* GitHub: https://github.com/CmlMagneville/mFD +* Source code: https://github.com/cran/mFD +* Date/Publication: 2024-02-26 14:00:06 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "mFD")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mFD-Ex.R’ failed + The error most likely occurred in: + + > ### Name: alpha.fd.fe.plot + > ### Title: Illustrate Functional Diversity indices based on Functional + > ### Entities + > ### Aliases: alpha.fd.fe.plot + > + > ### ** Examples + > + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Compute_and_interpret_quality_of_functional_spaces.Rmd’ using rmarkdown + ``` + +# mFLICA + +
+ +* Version: 0.1.6 +* GitHub: https://github.com/DarkEyes/mFLICA +* Source code: https://github.com/cran/mFLICA +* Date/Publication: 2024-06-11 08:10:02 UTC +* Number of recursive dependencies: 52 + +Run `revdepcheck::cloud_details(, "mFLICA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mFLICA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: mFLICA + > ### Title: mFLICA: leadership-inference framework for multivariate time + > ### series + > ### Aliases: mFLICA + > + > ### ** Examples + > + ... + [1] "Finding factions:t1" + [1] "Finding factions:t11" + [1] "Finding factions:t21" + [1] "Finding factions:t31" + > + > # Plot time series of faction size ratios of all leaders + > + > plotMultipleTimeSeries(TS=obj1$factionSizeRatioTimeSeries, strTitle="Faction Size Ratios") + Error: Can't find property @i + Execution halted + ``` + +# mfp2 + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/EdwinKipruto/mfp2 +* Source code: https://github.com/cran/mfp2 +* Date/Publication: 2025-05-15 09:30:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "mfp2")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘mfp2.Rmd’ using rmarkdown + + Quitting from mfp2.Rmd:168-270 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'mfp2.Rmd' failed with diagnostics: + Can't add `x[[i]]` to a object. + --- failed re-building ‘mfp2.Rmd’ + + SUMMARY: processing the following file failed: + ‘mfp2.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# mgcViz + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/mfasiolo/mgcViz +* Source code: https://github.com/cran/mgcViz +* Date/Publication: 2025-04-11 11:30:07 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "mgcViz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mgcViz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gridPrint + > ### Title: Plotting plotSmooth objects on a grid + > ### Aliases: gridPrint + > + > ### ** Examples + > + > library(mgcViz) + ... + > + > # All on one page, method 2: + > gridPrint(grobs = list(o1, o2, qpl), ncol = 2) + > + > # Works also when some ggplot objects are present + > gridPrint(o1, o2, qpl, ggplot(), ncol = 2) + Warning: %+% x was deprecated in ggplot2 4.0.0. + ℹ Please use + x instead. + Error: C stack usage 9962756 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘mgcviz.rmd’ using rmarkdown + ``` + +# MIC + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/agerada/MIC +* Source code: https://github.com/cran/MIC +* Date/Publication: 2025-02-07 09:40:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "MIC")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MIC-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.mic_validation + > ### Title: Plot MIC validation results + > ### Aliases: plot.mic_validation + > + > ### ** Examples + > + > gold_standard <- c("<0.25", "8", "64", ">64") + ... + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot_gtable, ggplot2::ggplot_built)`(data = ``) + 6. └─layout$render(geom_grobs, data, theme, plot@labels) + 7. └─ggplot2 (local) render(..., self = self) + 8. └─self$facet$draw_panels(...) + 9. └─lemon (local) draw_panels(...) + 10. └─gtable::gtable_add_col_space(panel_table, theme$panel.spacing.x %||% theme$panel.spacing) + 11. └─cli::cli_abort("{.arg width} must be of length 1 or ncol - 1") + 12. └─rlang::abort(...) + Execution halted + ``` + +# miceRanger + +
+ +* Version: 1.5.0 +* GitHub: https://github.com/FarrellDay/miceRanger +* Source code: https://github.com/cran/miceRanger +* Date/Publication: 2021-09-06 15:20:02 UTC +* Number of recursive dependencies: 140 + +Run `revdepcheck::cloud_details(, "miceRanger")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘miceRanger-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotImputationVariance + > ### Title: plotImputationVariance + > ### Aliases: plotImputationVariance + > + > ### ** Examples + > + > data("sampleMiceDefs") + > plotImputationVariance( + + sampleMiceDefs + + , monteCarloSimulations = 100 + + ) + Error: Can't find property @i + Execution halted + ``` + +# microdiluteR + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/silvia-eckert/microdiluteR +* Source code: https://github.com/cran/microdiluteR +* Date/Publication: 2024-05-13 11:23:25 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "microdiluteR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + Backtrace: + ▆ + 1. └─microdiluteR::plot_growth_performance(input_data = test_summarized_data) at test-plot_growth_performance.R:30:3 + 2. └─ggh4x::facet_nested(facet_formula) + 3. └─cli::cli_abort("The {.arg nest_line} argument must be {.cls element_blank} or inherit \\\n from {.cls element_line}.") + 4. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 122 ] + Error: Test failures + Execution halted + ``` + +# microeco + +
+ +* Version: 1.15.0 +* GitHub: https://github.com/ChiLiubio/microeco +* Source code: https://github.com/cran/microeco +* Date/Publication: 2025-05-18 11:10:02 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "microeco")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘microeco-Ex.R’ failed + The error most likely occurred in: + + > ### Name: trans_beta + > ### Title: Create 'trans_beta' object for beta-diversity analysis + > ### Aliases: trans_beta + > + > ### ** Examples + > + > + ... + ✖ You've supplied an object. + Backtrace: + ▆ + 1. └─t1$plot_ordination(plot_type = "point") + 2. └─ggplot2::ggplot(...) + 3. ├─S7::S7_dispatch() + 4. └─ggplot2 (local) `method(ggplot2, class_any)`(data = ``, mapping = ``, ..., environment = ``) + 5. └─cli::cli_abort(...) + 6. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.5Mb + sub-directories of 1Mb or more: + R 2.0Mb + data 6.0Mb + ``` + +# migraph + +
+ +* Version: 1.4.5 +* GitHub: https://github.com/stocnet/migraph +* Source code: https://github.com/cran/migraph +* Date/Publication: 2024-12-02 10:00:10 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "migraph")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘migraph-Ex.R’ failed + The error most likely occurred in: + + > ### Name: regression + > ### Title: Linear and logistic regression for network data + > ### Aliases: regression net_regression + > + > ### ** Examples + > + > networkers <- ison_networkers %>% to_subgraph(Discipline == "Sociology") + ... + 4 sim Citations 39.4 3.13 0.1 + > glance(model1) + # A tibble: 1 × 8 + r.squared adj.r.squared sigma statistic p.value df df.residual nobs + + 1 0.0674 0.0570 48.9 6.46 0.000309 3 268 272 + > plot(model1) + Error in loadNamespace(x) : there is no package called ‘patchwork’ + Calls: plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(manynet) + > library(migraph) + > + > test_check("migraph") + Starting 2 test processes + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 34 ] + ... + 2. ├─migraph:::plot.network_test(cugtest) + 3. │ └─manynet:::`+.ggplot`(...) + 4. └─base::loadNamespace(x) + 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) + 6. └─base (local) withOneRestart(expr, restarts[[1L]]) + 7. └─base (local) doWithOneRestart(return(expr), restart) + + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 34 ] + Error: Test failures + Execution halted + ``` + +# mikropml + +
+ +* Version: 1.6.1 +* GitHub: https://github.com/SchlossLab/mikropml +* Source code: https://github.com/cran/mikropml +* Date/Publication: 2023-08-21 15:10:05 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "mikropml")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(mikropml) + > test_check("mikropml") + Fraction of data in the training set: 0.778 + Groups in the training set: A C D + Groups in the testing set: B + Fraction of data in the training set: 0.778 + ... + `names(expected)` is absent + ── Failure ('test-plot.R:140:3'): plot_mean_prc uses geom ribbon, line, and hline ── + ... %>% unlist() (`actual`) not equal to c(...) (`expected`). + + `names(actual)` is a character vector ('geom_ribbon1', 'geom_ribbon2', 'geom_ribbon3', 'geom_ribbon4', 'geom_line1', ...) + `names(expected)` is absent + + [ FAIL 2 | WARN 19 | SKIP 12 | PASS 314 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) create_grouped_data_partition.Rd:60: Lost braces; missing escapes or markup? + 60 | Zena Lapp, {zenalapp@umich.edu} + | ^ + checkRd: (-1) create_grouped_data_partition.Rd:62: Lost braces; missing escapes or markup? + 62 | Kelly Sovacool, {sovacool@umich.edu} + | ^ + checkRd: (-1) create_grouped_k_multifolds.Rd:30: Lost braces; missing escapes or markup? + 30 | Zena Lapp, {zenalapp@umich.edu} + | ^ + checkRd: (-1) get_partition_indices.Rd:58: Lost braces; missing escapes or markup? + 58 | Kelly Sovacool, {sovacool@umich.edu} + | ^ + checkRd: (-1) set_hparams_glmnet.Rd:16: Lost braces; missing escapes or markup? + 16 | Zena Lapp, {zenalapp@umich.edu} + | ^ + ``` + +# MiMIR + +
+ +* Version: 1.5 +* GitHub: NA +* Source code: https://github.com/cran/MiMIR +* Date/Publication: 2024-02-01 08:50:02 UTC +* Number of recursive dependencies: 193 + +Run `revdepcheck::cloud_details(, "MiMIR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MiMIR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: LOBOV_accuracies + > ### Title: LOBOV_accuracies + > ### Aliases: LOBOV_accuracies + > + > ### ** Examples + > + > require(pROC) + ... + 56 metabolites x 500 samples + | Pruning samples on5SD: + 56 metabolites x 500 samples + | Performing scaling ... DONE! + | Imputation ... DONE! + > p_avail<-colnames(b_p)[c(1:5)] + > LOBOV_accuracies(sur$surrogates, b_p, p_avail, MiMIR::acc_LOBOV) + Error in pm[[2]] : subscript out of bounds + Calls: LOBOV_accuracies -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# miRetrieve + +
+ +* Version: 1.3.4 +* GitHub: NA +* Source code: https://github.com/cran/miRetrieve +* Date/Publication: 2021-09-18 17:30:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "miRetrieve")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(miRetrieve) + > + > test_check("miRetrieve") + [ FAIL 7 | WARN 15 | SKIP 0 | PASS 196 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + y[1]: "list" + ── Failure ('test-plotscore.R:44:5'): Tests plotting scores ──────────────────── + typeof(plot_own) not equal to "list". + 1/1 mismatches + x[1]: "object" + y[1]: "list" + + [ FAIL 7 | WARN 15 | SKIP 0 | PASS 196 ] + Error: Test failures + Execution halted + ``` + +# MiRNAQCD + +
+ +* Version: 1.1.3 +* GitHub: NA +* Source code: https://github.com/cran/MiRNAQCD +* Date/Publication: 2023-05-02 07:00:02 UTC +* Number of recursive dependencies: 50 + +Run `revdepcheck::cloud_details(, "MiRNAQCD")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(MiRNAQCD) + > + > test_check("MiRNAQCD") + + ############################### + + ... + 3. ├─ggplot2::theme(...) + 4. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL) + 5. │ └─base::mget(args, envir = env) + 6. └─ggplot2::element_text(size = 14, face = "bold", color = 1) + 7. └─S7::new_object(...) + 8. └─S7::validate(object, recursive = !parent_validated) + + [ FAIL 1 | WARN 65 | SKIP 0 | PASS 12 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘qpdf’ + All declared Imports should be used. + ``` + +# MiscMetabar + +
+ +* Version: 0.14.2 +* GitHub: https://github.com/adrientaudiere/MiscMetabar +* Source code: https://github.com/cran/MiscMetabar +* Date/Publication: 2025-03-20 15:20:02 UTC +* Number of recursive dependencies: 419 + +Run `revdepcheck::cloud_details(, "MiscMetabar")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MiscMetabar-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggscatt_pq + > ### Title: Scatterplot with marginal distributions and statistical results + > ### against Hill diversity of phyloseq object + > ### Aliases: ggscatt_pq + > + > ### ** Examples + > + ... + Backtrace: + ▆ + 1. └─MiscMetabar::ggscatt_pq(data_fungi_mini, "Time", type = "non-parametric") + 2. └─ggstatsplot::ggscatterstats(...) + 3. └─ggstatsplot::theme_ggstatsplot() + 4. └─ggside:::`+.gg`(...) + 5. ├─ggside:::add_gg(e1 = e1, e2 = e2, e2name = e2name) + 6. └─ggside:::add_gg.default(e1 = e1, e2 = e2, e2name = e2name) + 7. └─rlang::abort(glue("No method defined for class {paste(class(e1),collapse = ', ')}.")) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(MiscMetabar) + Loading required package: phyloseq + Loading required package: ggplot2 + Loading required package: dada2 + Loading required package: Rcpp + ... + 2. │ └─testthat::quasi_label(enquo(object), arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. └─MiscMetabar::multitax_bar_pq(...) + 5. └─ggh4x::facet_nested(LVL1 + LVL2 ~ FACT, scales = "free", space = "free") + 6. └─cli::cli_abort("The {.arg nest_line} argument must be {.cls element_blank} or inherit \\\n from {.cls element_line}.") + 7. └─rlang::abort(...) + + [ FAIL 3 | WARN 3 | SKIP 72 | PASS 79 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘MiscMetabar.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.2Mb + sub-directories of 1Mb or more: + data 2.0Mb + extdata 1.2Mb + ``` + +# miscset + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/setempler/miscset +* Source code: https://github.com/cran/miscset +* Date/Publication: 2017-02-24 16:46:57 +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "miscset")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘miscset.Rmd’ using rmarkdown + ``` + +# missingHE + +
+ +* Version: 1.5.0 +* GitHub: NA +* Source code: https://github.com/cran/missingHE +* Date/Publication: 2023-03-21 08:50:02 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "missingHE")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘missingHE-Ex.R’ failed + The error most likely occurred in: + + > ### Name: hurdle + > ### Title: Full Bayesian Models to handle missingness in Economic + > ### Evaluations (Hurdle Models) + > ### Aliases: hurdle + > ### Keywords: CEA Hurdle JAGS Models data missing + > + > ### ** Examples + ... + > + > # Assess model convergence using graphical tools + > # Produce histograms of the posterior samples for the mean effects + > diag.hist <- diagnostic(model.hurdle, type = "histogram", param = "mu.e") + Loading required namespace: ggmcmc + Loading required namespace: mcmcplots + Loading required namespace: ggthemes + Loading required namespace: mcmcr + Error: C stack usage 9962692 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Fitting_MNAR_models_in_missingHE.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘mcmcr’ + All declared Imports should be used. + ``` + +# misspi + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/misspi +* Date/Publication: 2023-10-17 09:50:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "misspi")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘misspi-Ex.R’ failed + The error most likely occurred in: + + > ### Name: evaliq + > ### Title: Evaluate the Imputation Quality + > ### Aliases: evaliq + > + > ### ** Examples + > + > # A very quick example + ... + > # Default plot + > er.eval <- evaliq(x.true[na.idx], x.est[na.idx]) + `geom_smooth()` using formula = 'y ~ x' + > + > # Interactive plot + > er.eval <- evaliq(x.true[na.idx], x.est[na.idx], interactive = TRUE) + `geom_smooth()` using formula = 'y ~ x' + Error in pm[[2]] : subscript out of bounds + Calls: evaliq -> print -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# mistral + +
+ +* Version: 2.2.2 +* GitHub: NA +* Source code: https://github.com/cran/mistral +* Date/Publication: 2024-01-17 13:40:02 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "mistral")` for more info + +
+ +## Newly broken + +* checking whether package ‘mistral’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘mistral’ + See ‘/tmp/workdir/mistral/new/mistral.Rcheck/00install.out’ for details. + ``` + +# misty + +
+ +* Version: 0.7.1 +* GitHub: NA +* Source code: https://github.com/cran/misty +* Date/Publication: 2025-03-10 17:40:07 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "misty")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘misty-Ex.R’ failed + The error most likely occurred in: + + > ### Name: na.pattern + > ### Title: Missing Data Pattern + > ### Aliases: na.pattern + > + > ### ** Examples + > + > # Example 1: Compute a summary of missing data patterns + ... + 24. └─ggplot2 (local) extract_key(...) + 25. └─Guide$extract_key(scale, aesthetic, ...) + 26. └─ggplot2 (local) extract_key(...) + 27. └─scale$get_labels(breaks) + 28. └─ggplot2 (local) get_labels(..., self = self) + 29. └─self$scale$get_labels(breaks) + 30. └─ggplot2 (local) get_labels(..., self = self) + 31. └─cli::cli_abort(...) + 32. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.6Mb + sub-directories of 1Mb or more: + R 4.0Mb + help 1.5Mb + ``` + +# MixLFA + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/MixLFA +* Date/Publication: 2024-10-17 16:00:05 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "MixLFA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MixLFA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: stdUnique + > ### Title: Generate Standardized Uniqueness from MLFA Results + > ### Aliases: stdUnique + > + > ### ** Examples + > + > # Load the necessary datasets + ... + iteration 44 + iteration 45 + iteration 46 + iteration 47 + iteration 48 + iteration 49 + > # Generate the uniqueness plots for the first cluster + > stdUnique(result_MLFA, C=1) + Error: C stack usage 9962228 is too close to the limit + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 43.9Mb + sub-directories of 1Mb or more: + libs 43.6Mb + ``` + +# MixOptim + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/MixOptim +* Date/Publication: 2020-07-01 09:40:11 UTC +* Number of recursive dependencies: 49 + +Run `revdepcheck::cloud_details(, "MixOptim")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘basic.Rmd’ using rmarkdown + + Quitting from basic.Rmd:28-40 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'basic.Rmd' failed with diagnostics: + Can't add `p2` to a object. + --- failed re-building ‘basic.Rmd’ + + SUMMARY: processing the following file failed: + ‘basic.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘rlang’ + All declared Imports should be used. + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# mixpoissonreg + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/vpnsctl/mixpoissonreg +* Source code: https://github.com/cran/mixpoissonreg +* Date/Publication: 2021-03-10 19:50:06 UTC +* Number of recursive dependencies: 135 + +Run `revdepcheck::cloud_details(, "mixpoissonreg")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘influence-mixpoissonreg.Rmd’ using rmarkdown + ``` + +# mizer + +
+ +* Version: 2.5.3 +* GitHub: https://github.com/sizespectrum/mizer +* Source code: https://github.com/cran/mizer +* Date/Publication: 2024-10-17 07:10:09 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "mizer")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + • plots/plot-feeding-level.svg + • plots/plot-single-growth-curve.svg + • plots/plot-spectra.svg + • plots/plot-yield-by-gear.svg + • plots/plot-yield.svg + • plots/plotfishing-mortality.svg + • plots/plotfmort-truncated.svg + • plots/plotpredation-mortality.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.5Mb + sub-directories of 1Mb or more: + help 1.8Mb + ``` + +# MKpower + +
+ +* Version: 1.0 +* GitHub: https://github.com/stamats/MKpower +* Source code: https://github.com/cran/MKpower +* Date/Publication: 2024-09-23 14:30:01 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "MKpower")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MKpower-Ex.R’ failed + The error most likely occurred in: + + > ### Name: qqunif + > ### Title: qq-Plots for Uniform Distribution + > ### Aliases: qqunif qqunif.default qqunif.sim.power.ttest + > ### qqunif.sim.power.wtest + > ### Keywords: hplot + > + > ### ** Examples + ... + 24. │ └─ggplot2 (local) FUN(X[[i]], ...) + 25. │ └─self$draw_group(group, panel_params, coord, ...) + 26. │ └─ggplot2 (local) draw_group(...) + 27. │ └─ggplot2 (local) draw_group(..., self = self) + 28. └─base::.handleSimpleError(...) + 29. └─rlang (local) h(simpleError(msg, call)) + 30. └─handlers[[1L]](cnd) + 31. └─cli::cli_abort(...) + 32. └─rlang::abort(...) + Execution halted + ``` + +# mlergm + +
+ +* Version: 0.8 +* GitHub: NA +* Source code: https://github.com/cran/mlergm +* Date/Publication: 2021-08-23 16:00:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "mlergm")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘mlergm_tutorial.Rmd’ using rmarkdown + + Quitting from mlergm_tutorial.Rmd:146-148 [unnamed-chunk-4] + Error: processing vignette 'mlergm_tutorial.Rmd' failed with diagnostics: + C stack usage 9962852 is too close to the limit + --- failed re-building ‘mlergm_tutorial.Rmd’ + + SUMMARY: processing the following file failed: + ‘mlergm_tutorial.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# mlr3fairness + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/mlr-org/mlr3fairness +* Source code: https://github.com/cran/mlr3fairness +* Date/Publication: 2023-05-04 23:00:02 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "mlr3fairness")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘debiasing-vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) groupdiff_tau.Rd:23: Lost braces + 23 | \code{groupdiff_tau()} computes \eqn{min(x/y, y/x)}, i.e. the smallest symmetric ratio between \eqn{x} and eqn{y} + | ^ + ``` + +# mlr3spatiotempcv + +
+ +* Version: 2.3.2 +* GitHub: https://github.com/mlr-org/mlr3spatiotempcv +* Source code: https://github.com/cran/mlr3spatiotempcv +* Date/Publication: 2024-11-29 13:10:02 UTC +* Number of recursive dependencies: 166 + +Run `revdepcheck::cloud_details(, "mlr3spatiotempcv")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mlr3spatiotempcv-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot.ResamplingCustomCV + > ### Title: Visualization Functions for Non-Spatial CV Methods. + > ### Aliases: autoplot.ResamplingCustomCV plot.ResamplingCustomCV + > + > ### ** Examples + > + > if (mlr3misc::require_namespaces(c("sf", "patchwork"), quietly = TRUE)) { + ... + 12. └─base_ops[[.Generic]](e1, e2) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 15. └─ggplot2:::add_ggplot(e1, e2, e2name) + 16. └─ggplot2::ggplot_add(object, p, objectname) + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > if (requireNamespace("testthat", quietly = TRUE)) { + + library("checkmate") + + library("testthat") + + library("mlr3spatiotempcv") + + test_check("mlr3spatiotempcv") + + } + Loading required package: mlr3 + ... + • 2-autoplot/sptcvcstf-2d-time-var-fold-1-sample-fold-n.svg + • 2-autoplot/sptcvcstf-2d-time-var-fold-1.svg + • 2-autoplot/sptcvcstf-2d-time-var-sample-fold-n.svg + • 2-autoplot/sptcvcstf-3d-time-var-fold-1-2-sample-fold-n.svg + • 2-autoplot/sptcvcstf-3d-time-var-fold-1-2.svg + • 2-autoplot/sptcvcstf-3d-time-var-fold-1-sample-fold-n.svg + • autoplot_buffer/spcvbuffer-fold-1-2.svg + • autoplot_buffer/spcvbuffer-fold-1.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘mlr3spatiotempcv.Rmd’ using rmarkdown + --- finished re-building ‘mlr3spatiotempcv.Rmd’ + + --- re-building ‘spatiotemp-viz.Rmd’ using rmarkdown + + Quitting from spatiotemp-viz.Rmd:89-148 [unnamed-chunk-4] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ... + + Error: processing vignette 'spatiotemp-viz.Rmd' failed with diagnostics: + Can't add `p_coords` to a object. + --- failed re-building ‘spatiotemp-viz.Rmd’ + + SUMMARY: processing the following file failed: + ‘spatiotemp-viz.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.9Mb + sub-directories of 1Mb or more: + data 3.5Mb + ``` + +# mlr3viz + +
+ +* Version: 0.10.1 +* GitHub: https://github.com/mlr-org/mlr3viz +* Source code: https://github.com/cran/mlr3viz +* Date/Publication: 2025-01-16 16:40:02 UTC +* Number of recursive dependencies: 174 + +Run `revdepcheck::cloud_details(, "mlr3viz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mlr3viz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot.BenchmarkResult + > ### Title: Plots for Benchmark Results + > ### Aliases: autoplot.BenchmarkResult + > + > ### ** Examples + > + > if (requireNamespace("mlr3")) { + ... + INFO [08:32:14.906] [mlr3] Applying learner 'classif.rpart' on task 'sonar' (iter 4/10) + INFO [08:32:14.936] [mlr3] Applying learner 'classif.rpart' on task 'sonar' (iter 5/10) + INFO [08:32:14.971] [mlr3] Applying learner 'classif.rpart' on task 'sonar' (iter 6/10) + INFO [08:32:15.001] [mlr3] Applying learner 'classif.rpart' on task 'sonar' (iter 7/10) + INFO [08:32:15.035] [mlr3] Applying learner 'classif.rpart' on task 'sonar' (iter 8/10) + INFO [08:32:15.065] [mlr3] Applying learner 'classif.rpart' on task 'sonar' (iter 9/10) + INFO [08:32:15.095] [mlr3] Applying learner 'classif.rpart' on task 'sonar' (iter 10/10) + INFO [08:32:15.142] [mlr3] Finished benchmark + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > if (requireNamespace("testthat", quietly = TRUE)) { + + library("testthat") + + library("mlr3viz") + + test_check("mlr3viz") + + } + Starting 2 test processes + [ FAIL 4 | WARN 73 | SKIP 26 | PASS 86 ] + ... + • TuningInstanceSingleCrit/tisc-surface-grid-50.svg + • TuningInstanceSingleCrit/tisc-surface-regr-lm.svg + • TuningInstanceSingleCrit/tisc-surface.svg + • plot_learner_prediction/learner-prediction-1d-se.svg + • plot_learner_prediction/learner-prediction-binary-prob.svg + • plot_learner_prediction/learner-prediction-binary-response.svg + • plot_learner_prediction/learner-prediction-categorical.svg + • plot_learner_prediction/learner-prediction-prob.svg + Error: Test failures + Execution halted + ``` + +# mnda + +
+ +* Version: 1.0.9 +* GitHub: NA +* Source code: https://github.com/cran/mnda +* Date/Publication: 2023-01-25 08:30:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "mnda")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mnda-Ex.R’ failed + The error most likely occurred in: + + > ### Name: subgraph_difference_plot + > ### Title: Visualization of a difference subgroup using a circular graph + > ### Aliases: subgraph_difference_plot + > + > ### ** Examples + > + > myNet = network_gen(N_nodes = 100, N_var_nodes = 5, N_var_nei = 90, noise_sd = .01) + ... + Backtrace: + ▆ + 1. └─mnda::subgraph_difference_plot(graph_data, node.importance = node_importance_dummy) + 2. └─mnda::subgraph_plot(...) + 3. └─ggraph::geom_edge_arc(ggplot2::aes(color = EdgeColor, edge_width = abs(W)), edge_alpha = 0.7) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘MASS’ ‘Matrix’ ‘magrittr’ ‘reticulate’ ‘tensorflow’ ‘usethis’ + All declared Imports should be used. + ``` + +# mobr + +
+ +* Version: 3.0.0 +* GitHub: https://github.com/MoBiodiv/mobr +* Source code: https://github.com/cran/mobr +* Date/Publication: 2024-08-17 18:20:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "mobr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mobr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: get_delta_stats + > ### Title: Conduct the MoB tests on drivers of biodiversity across scales. + > ### Aliases: get_delta_stats + > + > ### ** Examples + > + > data(inv_comm) + ... + | + |======================================================================| 100% + > plot(inv_mob_out) + Effect size shown at the following efforts: 2, 4, 8, 16, 32, 64, 128, 256 + Warning: No shared levels found between `names(values)` of the manual scale and the + data's fill values. + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: plot ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘beta_div_demo.Rmd’ using rmarkdown + Warning in get_engine(options$engine) : + Unknown language engine 'setup' (must be registered via knit_engines$set()). + --- finished re-building ‘beta_div_demo.Rmd’ + + --- re-building ‘mobr_intro.Rmd’ using rmarkdown + ``` + +# modeldb + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/tidymodels/modeldb +* Source code: https://github.com/cran/modeldb +* Date/Publication: 2023-11-01 14:30:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "modeldb")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_kmeans_viz.R:5:3'): plot_kmeans() returns a ggplot2 object ─── + class(plot_kmeans(mtcars, mpg, wt, group = am)) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 1 | WARN 33 | SKIP 0 | PASS 18 ] + Error: Test failures + Execution halted + ``` + +# modeltime + +
+ +* Version: 1.3.1 +* GitHub: https://github.com/business-science/modeltime +* Source code: https://github.com/cran/modeltime +* Date/Publication: 2024-10-22 20:10:02 UTC +* Number of recursive dependencies: 232 + +Run `revdepcheck::cloud_details(, "modeltime")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘modeltime-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_modeltime_forecast + > ### Title: Interactive Forecast Visualization + > ### Aliases: plot_modeltime_forecast + > + > ### ** Examples + > + > library(dplyr) + ... + + new_data = testing(splits), + + actual_data = m750 + + ) %>% + + plot_modeltime_forecast(.interactive = FALSE) + Warning in for (i in seq_along(dots)) { : + closing unused connection 5 (<-localhost:11189) + Warning in for (i in seq_along(dots)) { : + closing unused connection 4 (<-localhost:11189) + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘getting-started-with-modeltime.Rmd’ using rmarkdown + ``` + +# modeltime.resample + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/business-science/modeltime.resample +* Source code: https://github.com/cran/modeltime.resample +* Date/Publication: 2023-04-12 15:50:02 UTC +* Number of recursive dependencies: 235 + +Run `revdepcheck::cloud_details(, "modeltime.resample")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > + > # Machine Learning + > library(tidymodels) + ── Attaching packages ────────────────────────────────────── tidymodels 1.3.0 ── + ✔ broom 1.0.8 ✔ recipes 1.3.0 + ✔ dials 1.4.0 ✔ rsample 1.3.0 + ... + ▆ + 1. ├─m750_models_resample %>% ... at test-modeltime_fit_resamples.R:116:5 + 2. └─modeltime.resample::plot_modeltime_resamples(., .interactive = TRUE) + 3. ├─plotly::ggplotly(g) + 4. └─plotly:::ggplotly.ggplot(g) + 5. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 4 | SKIP 0 | PASS 16 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘getting-started.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘crayon’ ‘dials’ ‘glue’ ‘parsnip’ + All declared Imports should be used. + ``` + +# moderndive + +
+ +* Version: 0.7.0 +* GitHub: https://github.com/moderndive/moderndive +* Source code: https://github.com/cran/moderndive +* Date/Publication: 2024-09-01 21:40:05 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "moderndive")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘moderndive.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.3Mb + sub-directories of 1Mb or more: + data 6.5Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 6298 marked UTF-8 strings + ``` + +# modgo + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/modgo +* Date/Publication: 2024-09-11 16:20:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "modgo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘modgo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: corr_plots + > ### Title: Plots correlation matrix of original and simulated data + > ### Aliases: corr_plots + > + > ### ** Examples + > + > + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘modgo_vignette.Rmd’ using rmarkdown + + Quitting from modgo_vignette.Rmd:61-64 [correlation_default] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'modgo_vignette.Rmd' failed with diagnostics: + Can't add `simulation_plot` to a object. + --- failed re-building ‘modgo_vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘modgo_vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# Momocs + +
+ +* Version: 1.4.1 +* GitHub: https://github.com/MomX/Momocs +* Source code: https://github.com/cran/Momocs +* Date/Publication: 2023-11-13 11:13:30 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "Momocs")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Momocs-Ex.R’ failed + The error most likely occurred in: + + > ### Name: CLUST + > ### Title: Hierarchical clustering + > ### Aliases: CLUST CLUST.default CLUST.Coe + > + > ### ** Examples + > + > # On Coe + ... + 14. │ └─base::withCallingHandlers(...) + 15. └─ggplot2:::validate_as_data_frame(model) + 16. └─ggplot2:::check_data_frame_like(data) + 17. └─cli::cli_abort("{.code dim(data)} must return an {.cls integer} of length 2.") + 18. └─rlang::abort(...) + Warning in fortify(data, ...) : Arguments in `...` must be used. + ✖ Problematic argument: + • horiz = horiz + ℹ Did you misspell an argument name? + Execution halted + ``` + +# moranajp + +
+ +* Version: 0.9.7 +* GitHub: https://github.com/matutosi/moranajp +* Source code: https://github.com/cran/moranajp +* Date/Publication: 2024-08-01 08:40:02 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "moranajp")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘moranajp-Ex.R’ failed + The error most likely occurred in: + + > ### Name: draw_bigram_network + > ### Title: Draw bigram network using morphological analysis data. + > ### Aliases: draw_bigram_network bigram trigram bigram_depend + > ### bigram_network word_freq bigram_network_plot + > + > ### ** Examples + > + ... + Backtrace: + ▆ + 1. └─moranajp::draw_bigram_network(df) + 2. └─moranajp::bigram_network_plot(big_net, freq = freq, ...) + 3. └─ggraph::geom_edge_link(...) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +# MorphoRegions + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/aagillet/MorphoRegions +* Source code: https://github.com/cran/MorphoRegions +* Date/Publication: 2024-08-21 12:40:06 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "MorphoRegions")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘MorphoRegions.Rmd’ using rmarkdown_notangle + ``` + +# mosaic + +
+ +* Version: 1.9.1 +* GitHub: https://github.com/ProjectMOSAIC/mosaic +* Source code: https://github.com/cran/mosaic +* Date/Publication: 2024-02-23 14:30:06 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "mosaic")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mosaic-Ex.R’ failed + The error most likely occurred in: + + > ### Name: cdist + > ### Title: Central portion of a distribution + > ### Aliases: cdist xcgamma xct xcchisq xcf xcbinom xcpois xcgeom xcnbinom + > ### xcbeta + > + > ### ** Examples + > + > cdist( "norm", .95) + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘Resampling.Rmd’ using rmarkdown + ``` + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘manipulate’ + ``` + +* checking installed package size ... NOTE + ``` + installed size is 6.9Mb + sub-directories of 1Mb or more: + R 5.0Mb + doc 1.2Mb + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘cubature’ + ``` + +# mosaicCalc + +
+ +* Version: 0.6.4 +* GitHub: https://github.com/ProjectMOSAIC/mosaicCalc +* Source code: https://github.com/cran/mosaicCalc +* Date/Publication: 2024-07-26 15:50:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "mosaicCalc")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mosaicCalc-Ex.R’ failed + The error most likely occurred in: + + > ### Name: streamlines + > ### Title: Dynamical systems calculations and graphics + > ### Aliases: streamlines flow_field trajectory_euler + > + > ### ** Examples + > + > streamlines(dx ~ x+y, dy~ x-y, domain(x=0:6, y=0:3)) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(mosaic) + + The 'mosaic' package masks several functions from core packages in order to add + additional features. The original behavior of these functions should not be affected by this. + + Attaching package: 'mosaic' + ... + 2. ├─mosaicCalc::vectorfield_plot(...) + 3. │ ├─base::suppressMessages(makeODE(...)) + 4. │ │ └─base::withCallingHandlers(...) + 5. │ └─mosaicCalc::makeODE(...) + 6. └─mosaicCalc::contour_plot(...) + 7. └─mosaicCalc:::first_three_args(...) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 134 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Calculus_with_R.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.1Mb + sub-directories of 1Mb or more: + data 4.0Mb + doc 1.0Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 56 marked UTF-8 strings + ``` + +# mosaicData + +
+ +* Version: 0.20.4 +* GitHub: https://github.com/ProjectMOSAIC/mosaicData +* Source code: https://github.com/cran/mosaicData +* Date/Publication: 2023-11-05 05:50:02 UTC +* Number of recursive dependencies: 54 + +Run `revdepcheck::cloud_details(, "mosaicData")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mosaicData-Ex.R’ failed + The error most likely occurred in: + + > ### Name: HeatX + > ### Title: Data from a heat exchanger laboratory + > ### Aliases: HeatX + > ### Keywords: datasets + > + > ### ** Examples + > + ... + Loading required package: ggformula + Loading required package: ggplot2 + Loading required package: scales + Loading required package: ggridges + + New to ggformula? Try the tutorials: + learnr::run_tutorial("introduction", package = "ggformula") + learnr::run_tutorial("refining", package = "ggformula") + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 7 marked UTF-8 strings + ``` + +# motifr + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/marioangst/motifr +* Source code: https://github.com/cran/motifr +* Date/Publication: 2020-12-10 15:40:02 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "motifr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘motifr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: directed_dummy_net + > ### Title: Two-level directed network dummy example + > ### Aliases: directed_dummy_net + > ### Keywords: datasets + > + > ### ** Examples + > + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─motifr::plot_mnet(directed_dummy_net) + 2. └─ggraph::geom_edge_loop() + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +# mpactr + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/mums2/mpactr +* Source code: https://github.com/cran/mpactr +* Date/Publication: 2025-03-29 00:30:05 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "mpactr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + `expected`: "gg" "ggplot" + ── Failure ('test-quality_control.R:44:3'): qc plot returns a generates a plot ── + class(plot) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 2 | WARN 0 | SKIP 1 | PASS 165 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘downstream_analyses.Rmd’ using rmarkdown + Warning: Duplicated chunk option(s) 'warning' in both chunk header and pipe comments of the chunk 'unnamed-chunk-18'. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.0Mb + sub-directories of 1Mb or more: + doc 4.9Mb + extdata 1.9Mb + libs 1.6Mb + ``` + +# mpmsim + +
+ +* Version: 3.2.0 +* GitHub: https://github.com/jonesor/mpmsim +* Source code: https://github.com/cran/mpmsim +* Date/Publication: 2025-03-06 14:40:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "mpmsim")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘generating_lefkovitch_models.Rmd’ using rmarkdown + --- finished re-building ‘generating_lefkovitch_models.Rmd’ + + --- re-building ‘generating_leslie_models.Rmd’ using rmarkdown + + Quitting from generating_leslie_models.Rmd:79-156 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'generating_leslie_models.Rmd' failed with diagnostics: + Can't add `plotB` to a object. + --- failed re-building ‘generating_leslie_models.Rmd’ + + --- re-building ‘sampling_error_propagation.Rmd’ using rmarkdown + ``` + +# MPTmultiverse + +
+ +* Version: 0.4-2 +* GitHub: https://github.com/mpt-network/MPTmultiverse +* Source code: https://github.com/cran/MPTmultiverse +* Date/Publication: 2020-06-24 09:40:11 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "MPTmultiverse")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MPTmultiverse-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fit_mpt + > ### Title: Multiverse Analysis for MPT Models + > ### Aliases: fit_mpt + > + > ### ** Examples + > + > + ... + Backtrace: + ▆ + 1. ├─base::plot(fit_all, which = "est") + 2. └─MPTmultiverse:::plot.multiverseMPT(fit_all, which = "est") + 3. └─MPTmultiverse:::plot_est(x, shapes = shapes) + 4. └─ggplot2::facet_grid(facets = ". ~ condition") + 5. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)") + 6. └─lifecycle:::deprecate_stop0(msg) + 7. └─rlang::cnd_signal(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction-bayen_kuhlmann_2011.rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) fit_mpt.Rd:139-142: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:143-148: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:149-159: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:167-168: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:169: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:170: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:171: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:176-177: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:178-179: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit_mpt.Rd:180-181: Lost braces in \itemize; meant \describe ? + ... + checkRd: (-1) mpt_options.Rd:18: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:19: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:20: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:21: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:22: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:23: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:24: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:26: Lost braces in \itemize; meant \describe ? + checkRd: (-1) mpt_options.Rd:27: Lost braces in \itemize; meant \describe ? + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# mrgsim.sa + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/kylebaron/mrgsim.sa +* Source code: https://github.com/cran/mrgsim.sa +* Date/Publication: 2023-12-08 13:50:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "mrgsim.sa")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > Sys.setenv("R_TESTS" = "") + > library(testthat) + > library(mrgsim.sa) + Loading required package: mrgsolve + + Attaching package: 'mrgsolve' + + ... + ── 10. Failure ('test-sens-plot.R:66:3'): multiple plots - facet_wrap ────────── + `p` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ... and 9 more + + + Maximum number of 10 failures reached, some test results may be missing. + + ══ DONE ════════════════════════════════════════════════════════════════════════ + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘mrgsim.sa.Rmd’ using rmarkdown + ``` + +# MRZero + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/MRZero +* Date/Publication: 2024-04-14 09:30:03 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "MRZero")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MRZero-Ex.R’ failed + The error most likely occurred in: + + > ### Name: mr_plot + > ### Title: Draw a scatter plot of the genetic associations and/or causal + > ### estimates + > ### Aliases: mr_plot mr_plot,MRInput-method mr_plot,MRAll-method + > ### mr_plot,MRMVInput-method + > + > ### ** Examples + > + > mr_plot(mr_input(bx = ldlc, bxse = ldlcse, by = chdlodds, byse = chdloddsse), + + line="egger", orientate = TRUE) + Error in UseMethod("plotly_build") : + no applicable method for 'plotly_build' applied to an object of class "c('ggplot', 'ggplot2::ggplot', 'ggplot2::gg', 'S7_object')" + Calls: mr_plot -> mr_plot -> plotly_build + Execution halted + ``` + +# MSCMT + +
+ +* Version: 1.4.0 +* GitHub: NA +* Source code: https://github.com/cran/MSCMT +* Date/Publication: 2024-03-19 10:20:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "MSCMT")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘CheckingSynth.Rmd’ using rmarkdown + --- finished re-building ‘CheckingSynth.Rmd’ + + --- re-building ‘UsingTimeSeries.Rmd’ using rmarkdown + --- finished re-building ‘UsingTimeSeries.Rmd’ + + --- re-building ‘WorkingWithMSCMT.Rmd’ using rmarkdown + + Quitting from WorkingWithMSCMT.Rmd:155-158 [unnamed-chunk-8] + ... + a valid -like object coercible by `as.data.frame()`. + Caused by error in `check_data_frame_like()`: + ! `dim(data)` must return an of length 2. + --- failed re-building ‘WorkingWithMSCMT.Rmd’ + + SUMMARY: processing the following file failed: + ‘WorkingWithMSCMT.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# mshap + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/mshap +* Date/Publication: 2021-06-17 08:40:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "mshap")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(mshap) + > + > test_check("mshap") + [ FAIL 8 | WARN 2 | SKIP 0 | PASS 19 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + `p2_all` has type 'object', not 'list'. + ── Failure ('test-plots.R:62:3'): Observation Plot Works with all arguments ──── + class(p2_all) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 8 | WARN 2 | SKIP 0 | PASS 19 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘tidyselect’ + All declared Imports should be used. + ``` + +# mstate + +
+ +* Version: 0.3.3 +* GitHub: https://github.com/hputter/mstate +* Source code: https://github.com/cran/mstate +* Date/Publication: 2024-07-11 21:30:06 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "mstate")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mstate-Ex.R’ failed + The error most likely occurred in: + + > ### Name: vis.multiple.pt + > ### Title: Visualise multiple probtrans objects + > ### Aliases: vis.multiple.pt + > + > ### ** Examples + > + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘visuals_demo.Rmd’ using rmarkdown + ``` + +# mtdesign + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/openpharma/mtdesign +* Source code: https://github.com/cran/mtdesign +* Date/Publication: 2024-11-05 14:10:15 UTC +* Number of recursive dependencies: 57 + +Run `revdepcheck::cloud_details(, "mtdesign")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(mtdesign) + > + > test_check("mtdesign") + testthat 2025-05-19 08:33:49 DEBUG test_check: Entry + testthat 2025-05-19 08:33:49 DEBUG test_check: Entry + testthat 2025-05-19 08:33:49 DEBUG test_check: Exit + ... + `expected`: "gg" "ggplot" + ── Failure ('test-powerPlot.R:6:3'): multiplication works ────────────────────── + class(powerPlot(simonGrid)) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 127 ] + Error: Test failures + Execution halted + ``` + +# mulea + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/ELTEbioinformatics/mulea +* Source code: https://github.com/cran/mulea +* Date/Publication: 2024-11-19 10:20:11 UTC +* Number of recursive dependencies: 169 + +Run `revdepcheck::cloud_details(, "mulea")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mulea-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_graph + > ### Title: Plot Graph (Network) + > ### Aliases: plot_graph + > + > ### ** Examples + > + > library(mulea) + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─mulea::plot_graph(...) + 2. └─ggraph::geom_edge_arc(aes(width = .data$weight), alpha = 0.5) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘mulea.Rmd’ using rmarkdown + ``` + +# mulgar + +
+ +* Version: 1.0.5 +* GitHub: https://github.com/dicook/mulgar +* Source code: https://github.com/cran/mulgar +* Date/Publication: 2025-04-07 02:30:02 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "mulgar")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mulgar-Ex.R’ failed + The error most likely occurred in: + + > ### Name: anomalies + > ### Title: Data sets with anomalies + > ### Aliases: anomalies anomaly1 anomaly2 anomaly3 anomaly4 anomaly5 + > ### Keywords: datasets + > + > ### ** Examples + > + > require(GGally) + Loading required package: GGally + Loading required package: ggplot2 + > data(anomaly1) + > data(anomaly2) + > ggscatmat(anomaly1) + Error: C stack usage 9963988 is too close to the limit + Execution halted + ``` + +# multid + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/vjilmari/multid +* Source code: https://github.com/cran/multid +* Date/Publication: 2024-02-15 13:20:02 UTC +* Number of recursive dependencies: 141 + +Run `revdepcheck::cloud_details(, "multid")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘multid-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_ddsc + > ### Title: Plot deconstructed difference score correlation + > ### Aliases: plot_ddsc + > + > ### ** Examples + > + > set.seed(342356) + ... + + ) + > fit<-ddsc_sem( + + data = d, y1 = "y1", y2 = "y2", + + x = "x" + + ) + > + > plot_ddsc(fit,x_label = "X", + + y_labels=c("Y1","Y2")) + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(p2)@layout`? + Execution halted + ``` + +# multilandr + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/phuais/multilandr +* Source code: https://github.com/cran/multilandr +* Date/Publication: 2025-02-14 14:50:10 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "multilandr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘multilandr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: metrics_plots + > ### Title: Pairwise metric plots + > ### Aliases: metrics_plots + > + > ### ** Examples + > + > # Pair plots between metrics "pland" of classes 1 to 4, for radius 3000 m + > metrics_plots(ed_metrics, classes = 1:4, radii = 3000, show_class_names = TRUE, + + c_level = "pland") + Error: C stack usage 9963284 is too close to the limit + Execution halted + ``` + +# multilevelPSA + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/jbryer/multilevelPSA +* Source code: https://github.com/cran/multilevelPSA +* Date/Publication: 2025-04-04 13:10:02 UTC +* Number of recursive dependencies: 126 + +Run `revdepcheck::cloud_details(, "multilevelPSA")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘multilevelPSA.Rmd’ using rmarkdown + ``` + +# multimedia + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/krisrs1128/multimedia +* Source code: https://github.com/cran/multimedia +* Date/Publication: 2024-09-18 12:30:05 UTC +* Number of recursive dependencies: 202 + +Run `revdepcheck::cloud_details(, "multimedia")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘multimedia-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_mediators + > ### Title: Visualize Indirect Effects + > ### Aliases: plot_mediators + > + > ### ** Examples + > + > # dataset with no true effects + ... +  9.  └─base_ops[[.Generic]](e1, e2) +  10.  ├─S7::S7_dispatch() +  11.  └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) +  12.  └─ggplot2:::add_ggplot(e1, e2, e2name) +  13.  └─ggplot2::ggplot_add(object, p, objectname) +  14.  ├─S7::S7_dispatch() +  15.  └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) +  16.  └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") +  17.  └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + ── Failure ('test-plot.R:43:5'): We can plot the sensitivity data. ───────────── + `g` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 87 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘illustration.Rmd’ using rmarkdown + ``` + +# multiplestressR + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/multiplestressR +* Date/Publication: 2021-10-26 07:30:02 UTC +* Number of recursive dependencies: 55 + +Run `revdepcheck::cloud_details(, "multiplestressR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘multiplestressR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: summary_plots + > ### Title: Generate Summary Figures + > ### Aliases: summary_plots + > + > ### ** Examples + > + > + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(multiplestressR) + > + > test_check("multiplestressR") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 16 ] + + ... + 15. └─ggplot2:::add_ggplot(e1, e2, e2name) + 16. └─ggplot2::ggplot_add(object, p, objectname) + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 16 ] + Error: Test failures + Execution halted + ``` + +# MultiTraits + +
+ +* Version: 0.5.0 +* GitHub: NA +* Source code: https://github.com/cran/MultiTraits +* Date/Publication: 2025-04-20 18:40:02 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "MultiTraits")` for more info + +
+ +## Newly broken + +* checking whether package ‘MultiTraits’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘MultiTraits’ ... +** package ‘MultiTraits’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: .onLoad failed in loadNamespace() for 'ggtern', details: + call: NULL + error: object properties are invalid: +- @lineend must be or , not S3 +Execution halted +ERROR: lazy loading failed for package ‘MultiTraits’ +* removing ‘/tmp/workdir/MultiTraits/new/MultiTraits.Rcheck/MultiTraits’ + + +``` +### CRAN + +``` +* installing *source* package ‘MultiTraits’ ... +** package ‘MultiTraits’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (MultiTraits) + + +``` +# munsell + +
+ +* Version: 0.5.1 +* GitHub: https://github.com/cwickham/munsell +* Source code: https://github.com/cran/munsell +* Date/Publication: 2024-04-01 23:40:10 UTC +* Number of recursive dependencies: 44 + +Run `revdepcheck::cloud_details(, "munsell")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘munsell-Ex.R’ failed + The error most likely occurred in: + + > ### Name: chroma_slice + > ### Title: Plot all colours with the same chroma + > ### Aliases: chroma_slice + > + > ### ** Examples + > + > chroma_slice(2) + > chroma_slice(18) + Warning: Removed 110 rows containing missing values or values outside the scale range + (`geom_text()`). + > # Maybe want to delete text and add axis instead + > p <- chroma_slice(18) + > p$layers[[2]] <- NULL # remove text layer + Error: Can't find property @i + Execution halted + ``` + +# mverse + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/mverseanalysis/mverse +* Source code: https://github.com/cran/mverse +* Date/Publication: 2025-04-24 08:10:02 UTC +* Number of recursive dependencies: 135 + +Run `revdepcheck::cloud_details(, "mverse")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mverse-Ex.R’ failed + The error most likely occurred in: + + > ### Name: multiverse_tree + > ### Title: Plot a multiverse tree diagram. + > ### Aliases: multiverse_tree + > + > ### ** Examples + > + > { + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─mverse::multiverse_tree(mv) + 2. └─ggraph::geom_edge_link(aes(color = "branch")) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + 1. └─mverse::multiverse_tree(mv) at test-inspect.R:343:3 + 2. └─ggraph::geom_edge_link(aes(color = "branch")) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + + [ FAIL 5 | WARN 0 | SKIP 0 | PASS 96 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘mverse_gettingstarted.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.0Mb + sub-directories of 1Mb or more: + data 7.0Mb + ``` + +# mvgam + +
+ +* Version: 1.1.51 +* GitHub: https://github.com/nicholasjclark/mvgam +* Source code: https://github.com/cran/mvgam +* Date/Publication: 2025-03-14 08:40:02 UTC +* Number of recursive dependencies: 140 + +Run `revdepcheck::cloud_details(, "mvgam")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘mvgam-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_mvgam_series + > ### Title: Plot observed time series used for 'mvgam' modelling + > ### Aliases: plot_mvgam_series + > + > ### ** Examples + > + > # Simulate and plot series with observations bounded at 0 and 1 (Beta responses) + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking whether package ‘mvgam’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: namespace ‘colorspace’ is not available and has been replaced + See ‘/tmp/workdir/mvgam/new/mvgam.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘gratia’ + ``` + +* checking installed package size ... NOTE + ``` + installed size is 13.0Mb + sub-directories of 1Mb or more: + R 8.0Mb + doc 2.0Mb + libs 2.2Mb + ``` + +# mvinfluence + +
+ +* Version: 0.9.0 +* GitHub: https://github.com/friendly/mvinfluence +* Source code: https://github.com/cran/mvinfluence +* Date/Publication: 2022-09-20 17:10:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "mvinfluence")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘uni-vs-multi.Rmd’ using rmarkdown + ``` + +# mvMAPIT + +
+ +* Version: 2.0.3 +* GitHub: https://github.com/lcrawlab/mvMAPIT +* Source code: https://github.com/cran/mvMAPIT +* Date/Publication: 2023-09-26 07:40:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "mvMAPIT")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘mvMAPIT.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 17.7Mb + sub-directories of 1Mb or more: + libs 16.5Mb + ``` + +# MVNtestchar + +
+ +* Version: 1.1.3 +* GitHub: NA +* Source code: https://github.com/cran/MVNtestchar +* Date/Publication: 2020-07-25 21:30:26 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "MVNtestchar")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Theory_and_Implementation.Rmd’ using rmarkdown + + Quitting from Theory_and_Implementation.Rmd:100-133 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + + Error: processing vignette 'Theory_and_Implementation.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘Theory_and_Implementation.Rmd’ + + SUMMARY: processing the following file failed: + ‘Theory_and_Implementation.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘ggplot2’ ‘grDevices’ ‘knitr’ ‘utils’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) MVNtestchar-package.Rd:16-17: Lost braces; missing escapes or markup? + 16 | {Provides a test of multivariate normality of a sample which does not require estimation of the nuisance parameters, the mean vector and covariance matrix. Rather, a sequence of transformations removes these nuisance parameters, resulting in a set of sample matrices that are positive definite. If, and only if the original data is multivariate normal, these matrices are uniformly distributed on the space of positive definite matrices in the unit hyper-rectangle. The package performs a goodness of fit test of this hypothesis. In addition to the test, functions in the package give visualizations of the support region of positive definite matrices for p equals 2. + | ^ + ``` + +# mxfda + +
+ +* Version: 0.2.2-1 +* GitHub: https://github.com/julia-wrobel/mxfda +* Source code: https://github.com/cran/mxfda +* Date/Publication: 2025-02-19 21:10:02 UTC +* Number of recursive dependencies: 259 + +Run `revdepcheck::cloud_details(, "mxfda")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plot.R:9:3'): plotting summary function ────────────────────── + plot(ovarian_FDA, y = "fundiff", what = "uni g") inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-plot.R:13:3'): plotting fpca ───────────────────────────────── + plot(ovarian_FDA, what = "uni g fpca", pc_choice = 1) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 44 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.1Mb + sub-directories of 1Mb or more: + data 4.5Mb + ``` + +# mxnorm + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/mxnorm +* Date/Publication: 2023-05-01 17:10:02 UTC +* Number of recursive dependencies: 170 + +Run `revdepcheck::cloud_details(, "mxnorm")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(mxnorm) + > + > test_check("mxnorm") + boundary (singular) fit: see help('isSingular') + boundary (singular) fit: see help('isSingular') + boundary (singular) fit: see help('isSingular') + ... + `expected`: "gg" "ggplot" + ── Failure ('test-plot_mx_umap.R:16:5'): plotting works ──────────────────────── + class(plot_mx_umap(mx_data)) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 2 | WARN 2 | SKIP 6 | PASS 85 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘e1071’ ‘glue’ + All declared Imports should be used. + ``` + +# myClim + +
+ +* Version: 1.4.0 +* GitHub: https://github.com/ibot-geoecology/myClim +* Source code: https://github.com/cran/myClim +* Date/Publication: 2025-02-21 08:50:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "myClim")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘myClim-Ex.R’ failed + The error most likely occurred in: + + > ### Name: mc_plot_raster + > ### Title: Plot data - ggplot2 geom_raster + > ### Aliases: mc_plot_raster + > + > ### ** Examples + > + > tmp_dir <- tempdir() + ... + 9. │ └─myClim (local) .f(.x[[i]], ...) + 10. │ └─ggforce::n_pages(plot) + 11. │ ├─ggplot_build(plot)$layout + 12. │ └─S7:::`$.S7_object`(ggplot_build(plot), "layout") + 13. │ └─base::stop(msg, call. = FALSE) + 14. └─base::.handleSimpleError(...) + 15. └─purrr (local) h(simpleError(msg, call)) + 16. └─cli::cli_abort(...) + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 12. │ └─S7:::`$.S7_object`(ggplot_build(plot), "layout") + 13. │ └─base::stop(msg, call. = FALSE) + 14. └─base::.handleSimpleError(...) + 15. └─purrr (local) h(simpleError(msg, call)) + 16. └─cli::cli_abort(...) + 17. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 28536 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 4 marked UTF-8 strings + ``` + +# NAIR + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/mlizhangx/Network-Analysis-for-Repertoire-Sequencing- +* Source code: https://github.com/cran/NAIR +* Date/Publication: 2024-03-03 00:52:36 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "NAIR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘NAIR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: labelClusters + > ### Title: Label Clusters in a Network Graph Plot + > ### Aliases: labelClusters addClusterLabels + > + > ### ** Examples + > + > set.seed(42) + ... + 1. └─NAIR::buildRepSeqNetwork(...) + 2. └─NAIR::addPlots(...) + 3. └─NAIR:::.generateNetworkGraphPlots(...) + 4. └─NAIR:::.plotNetworkGraph(...) + 5. └─ggraph::geom_edge_link0(width = edge_width, colour = "grey") + 6. └─ggplot2::layer(...) + 7. └─ggplot2:::validate_mapping(mapping, call_env) + 8. └─cli::cli_abort(msg, call = call) + 9. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(NAIR) + Welcome to NAIR: Network Analysis of Immune Repertoire. + Get started using `vignette("NAIR")`, or by visiting + https://mlizhangx.github.io/Network-Analysis-for-Repertoire-Sequencing-/ + > + > test_check("NAIR") + ... + 5. └─NAIR:::.plotNetworkGraph(...) + 6. └─ggraph::geom_edge_link0(width = edge_width, colour = "grey") + 7. └─ggplot2::layer(...) + 8. └─ggplot2:::validate_mapping(mapping, call_env) + 9. └─cli::cli_abort(msg, call = call) + 10. └─rlang::abort(...) + + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘NAIR.Rmd’ using rmarkdown + --- finished re-building ‘NAIR.Rmd’ + + --- re-building ‘buildRepSeqNetwork.Rmd’ using rmarkdown + + Quitting from buildRepSeqNetwork.Rmd:66-68 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + ... + Error: processing vignette 'supplementary.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘supplementary.Rmd’ + + SUMMARY: processing the following files failed: + ‘buildRepSeqNetwork.Rmd’ ‘cluster_analysis.Rmd’ ‘dual_chain.Rmd’ + ‘node_properties.Rmd’ ‘supplementary.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.6Mb + sub-directories of 1Mb or more: + libs 4.5Mb + ``` + +# NatParksPalettes + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/kevinsblake/NatParksPalettes +* Source code: https://github.com/cran/NatParksPalettes +* Date/Publication: 2022-10-09 21:10:02 UTC +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "NatParksPalettes")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘NatParksPalettes-Ex.R’ failed + The error most likely occurred in: + + > ### Name: natparks.pals + > ### Title: National Parks Palette Generator + > ### Aliases: natparks.pals + > ### Keywords: colors + > + > ### ** Examples + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# neatmaps + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/PhilBoileau/neatmaps +* Source code: https://github.com/cran/neatmaps +* Date/Publication: 2019-05-12 19:10:03 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "neatmaps")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘neatmaps-Ex.R’ failed + The error most likely occurred in: + + > ### Name: consClustResTable + > ### Title: Consensus Cluster Results in a Table + > ### Aliases: consClustResTable + > + > ### ** Examples + > + > # create the data frame using the network, node and edge attributes + ... + 17. └─ggplot2:::validate_as_data_frame(model) + 18. └─ggplot2:::check_data_frame_like(data) + 19. └─cli::cli_abort("{.code dim(data)} must return an {.cls integer} of length 2.") + 20. └─rlang::abort(...) + Warning in fortify(data, ...) : Arguments in `...` must be used. + ✖ Problematic arguments: + • labels = FALSE + • na.rm = TRUE + ℹ Did you misspell an argument name? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.3Mb + ``` + +# neatStats + +
+ +* Version: 1.13.3 +* GitHub: https://github.com/gasparl/neatstats +* Source code: https://github.com/cran/neatStats +* Date/Publication: 2022-12-07 20:50:02 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "neatStats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘neatStats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: peek_neat + > ### Title: Cursory Summaries and Plots per Group + > ### Aliases: peek_neat + > + > ### ** Examples + > + > + ... + 4.0140 2.0890 5.4570 3.1700 5.4240 0.0000 + > + > # with histogramms etc, using plot_neat + > peek_neat(mtcars, 'wt', group_by = 'cyl', f_plot = plot_neat) + Warning: The dot-dot notation (`..count..`) was deprecated in ggplot2 3.4.0. + ℹ Please use `after_stat(count)` instead. + ℹ The deprecated feature was likely used in the neatStats package. + Please report the issue to the authors. + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(the_plot)@layout`? + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) norm_tests.Rd:69: Lost braces + 69 | Anderson-Darling test." See url{https://github.com/Lakens/perfect-t-test} for + | ^ + checkRd: (-1) t_neat.Rd:243: Lost braces + 243 | Anderson-Darling test." See url{https://github.com/Lakens/perfect-t-test} for + | ^ + ``` + +# netcom + +
+ +* Version: 2.1.7 +* GitHub: https://github.com/langendorfr/netcom +* Source code: https://github.com/cran/netcom +* Date/Publication: 2024-06-04 17:50:05 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "netcom")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘tutorial.Rmd’ using rmarkdown + + Quitting from tutorial.Rmd:119-132 [Plot te network] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'tutorial.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘tutorial.Rmd’ + + SUMMARY: processing the following file failed: + ‘tutorial.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘ggfortify’ ‘ggplot2’ ‘ggraph’ ‘reshape2’ + All declared Imports should be used. + ``` + +# netplot + +
+ +* Version: 0.3-0 +* GitHub: https://github.com/USCCANA/netplot +* Source code: https://github.com/cran/netplot +* Date/Publication: 2024-06-30 20:00:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "netplot")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘base-and-grid.Rmd’ using rmarkdown + ``` + +# netropy + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/termehs/netropy +* Source code: https://github.com/cran/netropy +* Date/Publication: 2024-09-06 15:00:01 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "netropy")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘netropy-Ex.R’ failed + The error most likely occurred in: + + > ### Name: assoc_graph + > ### Title: Association Graphs + > ### Aliases: assoc_graph + > + > ### ** Examples + > + > library(ggraph) + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─netropy::assoc_graph(df.att.ed, 0.15) + 2. └─ggraph::geom_edge_link0(edge_colour = "grey40", edge_width = igraph::E(ag)$weight) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘div_gof.Rmd’ using rmarkdown + --- finished re-building ‘div_gof.Rmd’ + + --- re-building ‘joint_entropies.Rmd’ using rmarkdown + + Quitting from joint_entropies.Rmd:95-98 [assoc_g] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + ... + --- finished re-building ‘univariate_bivariate_trivariate.Rmd’ + + --- re-building ‘variable_domains.Rmd’ using rmarkdown + --- finished re-building ‘variable_domains.Rmd’ + + SUMMARY: processing the following file failed: + ‘joint_entropies.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# NetworkExtinction + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/NetworkExtinction +* Date/Publication: 2023-03-31 11:40:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "NetworkExtinction")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘NetworkExtinction.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) ExtinctionOrder.Rd:35: Lost braces + 35 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.} + | ^ + checkRd: (-1) RandomExtinctions.Rd:52: Lost braces + 52 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.} + | ^ + checkRd: (-1) RandomExtinctions.Rd:71-72: Lost braces + 71 | primary removals. For example, if a network has five species {A,B, + | ^ + checkRd: (-1) RandomExtinctions.Rd:72: Lost braces; missing escapes or markup? + 72 | ,D,E} and a pre-defined "random" order of removal {C,A,B,E,D} with + | ^ + checkRd: (-1) RandomExtinctions.Rd:77: Lost braces; missing escapes or markup? + 77 | vector, i.e., {C,A,B}." + | ^ + checkRd: (-1) SimulateExtinctions.Rd:38: Lost braces + 38 | \item{RewiringDist}{a numeric matrix of NxN dimension (N... number of nodes in Network). Contains, for example, phylogenetic or functional trait distances between nodes in Network which are used by the Rewiring argument to calculate rewiring probabilities. If Rewiring == function(x){x}, this matrix is expected to contain probabilities of a connection being present between species-pairs.} + | ^ + ``` + +# NeuralNetTools + +
+ +* Version: 1.5.3 +* GitHub: https://github.com/fawda123/NeuralNetTools +* Source code: https://github.com/cran/NeuralNetTools +* Date/Publication: 2022-01-06 15:30:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "NeuralNetTools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘NeuralNetTools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: garson + > ### Title: Variable importance using Garson's algorithm + > ### Aliases: garson garson.default garson.numeric garson.nnet garson.mlp + > ### garson.nn garson.train + > + > ### ** Examples + > + ... + > ## using numeric input + > + > wts_in <- c(13.12, 1.49, 0.16, -0.11, -0.19, -0.16, 0.56, -0.52, 0.81) + > struct <- c(2, 2, 1) #two inputs, two hidden, one output + > + > garson(wts_in, struct) + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Overview.Rmd’ using rmarkdown + ``` + +# NeuralSens + +
+ +* Version: 1.1.3 +* GitHub: https://github.com/JaiPizGon/NeuralSens +* Source code: https://github.com/cran/NeuralSens +* Date/Publication: 2024-05-11 19:43:03 UTC +* Number of recursive dependencies: 138 + +Run `revdepcheck::cloud_details(, "NeuralSens")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘NeuralSens-Ex.R’ failed + The error most likely occurred in: + + > ### Name: SensMatPlot + > ### Title: Plot sensitivities of a neural network model + > ### Aliases: SensMatPlot + > + > ### ** Examples + > + > ## Load data ------------------------------------------------------------------- + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +# neuroUp + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/eduardklap/neuroUp +* Source code: https://github.com/cran/neuroUp +* Date/Publication: 2024-08-28 08:20:05 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "neuroUp")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + expected$fig_d_nozero inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 6 | WARN 0 | SKIP 2 | PASS 4 ] + Deleting unused snapshots: + • estim_corr/create-fig-corr-nozero.svg + • estim_diff/create-fig-cohen-s-d.svg + • estim_diff/create-fig-d-nozero.svg + • estim_diff/create-fig-nozero.svg + Error: Test failures + Execution halted + ``` + +# nflplotR + +
+ +* Version: 1.4.0 +* GitHub: https://github.com/nflverse/nflplotR +* Source code: https://github.com/cran/nflplotR +* Date/Publication: 2024-08-21 12:20:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "nflplotR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘nflplotR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggpreview + > ### Title: Preview ggplot in Specified Dimensions + > ### Aliases: ggpreview + > + > ### ** Examples + > + > library(nflplotR) + ... + 17. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 18. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 19. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 20. │ └─base::withCallingHandlers(...) + 21. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 22. ├─S7::S7_dispatch() + 23. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 24. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 25. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.2Mb + sub-directories of 1Mb or more: + R 4.1Mb + ``` + +# NHSRplotthedots + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/NHSRplotthedots +* Date/Publication: 2021-11-03 20:20:10 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "NHSRplotthedots")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(NHSRplotthedots) + > + > test_check("NHSRplotthedots") + [ FAIL 2 | WARN 733 | SKIP 3 | PASS 430 ] + + ... + `attr(expected, 'S7_class')` is absent + ── Failure ('test-ptd_create_ggplot.R:79:3'): it returns a ggplot object ─────── + p$labels (`actual`) not equal to list(...) (`expected`). + + `actual` is an S7 object of class + `expected` is a list + + [ FAIL 2 | WARN 733 | SKIP 3 | PASS 430 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘NHSRdatasets’ ‘grid’ ‘utils’ + All declared Imports should be used. + ``` + +# nic + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/thiyangt/nic +* Source code: https://github.com/cran/nic +* Date/Publication: 2023-03-13 11:30:02 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "nic")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘color-palette-demo.Rmd’ using rmarkdown + ``` + +# nichetools + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/benjaminhlina/nichetools +* Source code: https://github.com/cran/nichetools +* Date/Publication: 2024-09-30 21:20:02 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "nichetools")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘using-nichetools-with-the-package-SIBER.Rmd’ using rmarkdown + + Quitting from using-nichetools-with-the-package-SIBER.Rmd:96-118 [unnamed-chunk-6] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'using-nichetools-with-the-package-SIBER.Rmd' failed with diagnostics: + The `axis.title` theme element must be a object. + ... + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + --- failed re-building ‘using-nichetools-with-the-package-nicheROVER.Rmd’ + + SUMMARY: processing the following files failed: + ‘using-nichetools-with-the-package-SIBER.Rmd’ + ‘using-nichetools-with-the-package-nicheROVER.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# NiLeDAM + +
+ +* Version: 0.3 +* GitHub: NA +* Source code: https://github.com/cran/NiLeDAM +* Date/Publication: 2023-09-18 06:00:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "NiLeDAM")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(NiLeDAM) + + *********************************************************** + + Welcome to the NiLeDAM package + ... + `expected`: "gg" "ggplot" + ── Failure ('test-popline.R:22:3'): test result on 'ageTests' plotted correctly ── + typeof(p) (`actual`) not equal to "list" (`expected`). + + `actual`: "object" + `expected`: "list" + + [ FAIL 8 | WARN 10 | SKIP 0 | PASS 49 ] + Error: Test failures + Execution halted + ``` + +# NIMAA + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/jafarilab/NIMAA +* Source code: https://github.com/cran/NIMAA +* Date/Publication: 2022-04-11 14:12:45 UTC +* Number of recursive dependencies: 180 + +Run `revdepcheck::cloud_details(, "NIMAA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘NIMAA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: extractSubMatrix + > ### Title: Extract the non-missing submatrices from a given matrix. + > ### Aliases: extractSubMatrix + > + > ### ** Examples + > + > # load part of the beatAML data + ... + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the NIMAA package. + Please report the issue at . + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the NIMAA package. + Please report the issue at . + Error in pm[[2]] : subscript out of bounds + Calls: extractSubMatrix ... plotSubmatrix -> print -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(NIMAA) + > + > test_check("NIMAA") + binmatnest.temperature + 13.21319 + Size of Square: 66 rows x 66 columns + ... + 1. └─NIMAA::extractSubMatrix(...) at test-extract-nonmissing-submatrix.R:5:3 + 2. └─NIMAA:::plotSubmatrix(...) + 3. ├─base::print(plotly::ggplotly(p)) + 4. ├─plotly::ggplotly(p) + 5. └─plotly:::ggplotly.ggplot(p) + 6. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 8 | SKIP 0 | PASS 7 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘NIMAA-vignette.Rmd’ using rmarkdown + + Quitting from NIMAA-vignette.Rmd:48-57 [plotIncMatrix function] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'NIMAA-vignette.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘NIMAA-vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘NIMAA-vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.5Mb + sub-directories of 1Mb or more: + data 2.0Mb + doc 4.0Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 24 marked UTF-8 strings + ``` + +# nlmixr2plot + +
+ +* Version: 3.0.1 +* GitHub: https://github.com/nlmixr2/nlmixr2plot +* Source code: https://github.com/cran/nlmixr2plot +* Date/Publication: 2025-02-14 15:10:02 UTC +* Number of recursive dependencies: 160 + +Run `revdepcheck::cloud_details(, "nlmixr2plot")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(nlmixr2plot) + > + > test_check("nlmixr2plot") + > loading into symengine environment... + > pruning branches (`if`/`else`) of saem model... + v done + ... + `expected`: TRUE + ── Failure ('test-add.R:46:3'): test addition operator ───────────────────────── + inherits(pl[[1]], "gg") is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 3 | WARN 4 | SKIP 2 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +# NMF + +
+ +* Version: 0.28 +* GitHub: NA +* Source code: https://github.com/cran/NMF +* Date/Publication: 2024-08-22 16:20:01 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "NMF")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘NMF-Ex.R’ failed + The error most likely occurred in: + + > ### Name: profplot + > ### Title: Plotting Expression Profiles + > ### Aliases: profplot profplot.default + > ### Keywords: aplot + > + > ### ** Examples + > + ... + > # draw a profile correlation plot: this show how the basis components are + > # returned in an unpredictable order + > profplot(res, res2) + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the NMF package. + Please report the issue to the authors. + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘NMF-vignette.Rnw’ using knitr + Error in citation(x) : there is no package called 'doMC' + Converted 9 of 10 package citations to BibTeX + Writing 11 Bibtex entries ... OK + Results written to file 'Rpackages.bib' + Error: processing vignette 'NMF-vignette.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'NMF-vignette.tex' failed. + LaTeX errors: + ! LaTeX Error: File `a4wide.sty' not found. + ... + l.62 \usepackage + {xspace}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘heatmaps.Rnw’ + + SUMMARY: processing the following files failed: + ‘NMF-vignette.Rnw’ ‘heatmaps.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# nmrrr + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/kaizadp/nmrrr +* Source code: https://github.com/cran/nmrrr +* Date/Publication: 2023-05-10 16:10:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "nmrrr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(nmrrr) + Use `citation('nmrrr') to cite this package + Willkommen, Bienvenue, Welcome! + > + > test_check("nmrrr") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 125 ] + ... + ── Error ('test-plotting.R:21:3'): nmr_plot_spectra works ────────────────────── + Error: Can't get S7 properties with `$`. Did you mean `pg@data`? + Backtrace: + ▆ + 1. ├─pg$data at test-plotting.R:21:3 + 2. └─S7:::`$.S7_object`(pg, data) at test-plotting.R:21:3 + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 125 ] + Error: Test failures + Execution halted + ``` + +# noisemodel + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/noisemodel +* Date/Publication: 2022-10-17 06:20:02 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "noisemodel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘noisemodel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: asy_def_ln + > ### Title: Asymmetric default label noise + > ### Aliases: asy_def_ln asy_def_ln.default asy_def_ln.formula + > + > ### ** Examples + > + > # load the dataset + ... + - Class virginica: 44/44 (100.00%) + - Class setosa: 18/22 (81.82%) + - Class versicolor: 25/35 (71.43%) + + ## Indices of noisy samples: + - Output class: 3, 6, 19, 21, 25, 27, 32, 34, 40, 44, 47, 50, 52, 57 + > plot(outdef) + Error: object properties are invalid: + - @colour must be , , or , not + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘noisemodel.Rmd’ using rmarkdown + + Quitting from noisemodel.Rmd:67-85 [example 1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! object properties are invalid: + - @colour must be , , or , not + --- + ... + Error: processing vignette 'noisemodel.Rmd' failed with diagnostics: + object properties are invalid: + - @colour must be , , or , not + --- failed re-building ‘noisemodel.Rmd’ + + SUMMARY: processing the following file failed: + ‘noisemodel.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) imp_int_an.Rd:24: Lost braces in \itemize; meant \describe ? + checkRd: (-1) imp_int_an.Rd:25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.ndmodel.Rd:16: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.ndmodel.Rd:17: Lost braces in \itemize; meant \describe ? + checkRd: (-1) plot.ndmodel.Rd:18: Lost braces in \itemize; meant \describe ? + ``` + +# nonmem2R + +
+ +* Version: 0.2.5 +* GitHub: NA +* Source code: https://github.com/cran/nonmem2R +* Date/Publication: 2024-03-11 17:30:02 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "nonmem2R")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘nonmem2R-Ex.R’ failed + The error most likely occurred in: + + > ### Name: basic.GOF4 + > ### Title: Basic 4- and 6-panel GOF + > ### Aliases: basic.GOF4 basic.GOF6 + > + > ### ** Examples + > + > # Get path to the example files included in nonmem2R package + ... + > ## Example 4 panel basic GOF + > basic.GOF4(subset(sdtab,DV>0),idv2="TAPD") + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the nonmem2R package. + Please report the issue to the authors. + Error: object properties are invalid: + - @colour must be , , or , not + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘GOFvignette.Rmd’ using rmarkdown + + Quitting from GOFvignette.Rmd:27-30 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! object properties are invalid: + - @colour must be , , or , not + --- + ... + Error: processing vignette 'VPCvignette.Rmd' failed with diagnostics: + object properties are invalid: + - @colour must be , , or , not + --- failed re-building ‘VPCvignette.Rmd’ + + SUMMARY: processing the following files failed: + ‘GOFvignette.Rmd’ ‘VPCvignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# normfluodbf + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/AlphaPrime7/normfluodbf +* Source code: https://github.com/cran/normfluodbf +* Date/Publication: 2024-09-27 23:10:03 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "normfluodbf")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ▆ + 1. ├─... %>% ... at test_plot_dev.R:13:3 + 2. └─normfluodbf:::plot_dev_with_custom_legends(...) + 3. ├─plotly::ggplotly(p) + 4. └─plotly:::ggplotly.ggplot(p) + 5. └─plotly::gg2list(...) + + [ FAIL 4 | WARN 613 | SKIP 0 | PASS 15 ] + Error: Test failures + Execution halted + ``` + +# NPflow + +
+ +* Version: 0.13.5 +* GitHub: https://github.com/sistm/NPflow +* Source code: https://github.com/cran/NPflow +* Date/Publication: 2024-01-13 10:00:02 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "NPflow")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘NPflow-Ex.R’ failed + The error most likely occurred in: + + > ### Name: DPMGibbsN + > ### Title: Slice Sampling of the Dirichlet Process Mixture Model with a + > ### prior on alpha + > ### Aliases: DPMGibbsN + > + > ### ** Examples + > + ... + > ######## + > library(ggplot2) + > p <- (ggplot(data.frame("X"=z[1,], "Y"=z[2,]), aes(x=X, y=Y)) + + + geom_point() + + + ggtitle("Toy example Data")) + > p + Warning: %+% x was deprecated in ggplot2 4.0.0. + ℹ Please use + x instead. + Error: C stack usage 9964452 is too close to the limit + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 14.6Mb + sub-directories of 1Mb or more: + libs 13.9Mb + ``` + +# nphRCT + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/nphRCT +* Date/Publication: 2024-06-27 12:30:02 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "nphRCT")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘explanation.Rmd’ using rmarkdown + + Quitting from explanation.Rmd:43-73 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'explanation.Rmd' failed with diagnostics: + Can't add `ggtheme` to a object. + --- failed re-building ‘explanation.Rmd’ + + --- re-building ‘weighted_log_rank_tests.Rmd’ using rmarkdown + ``` + +# nprobust + +
+ +* Version: 0.5.0 +* GitHub: NA +* Source code: https://github.com/cran/nprobust +* Date/Publication: 2025-04-14 07:50:06 UTC +* Number of recursive dependencies: 28 + +Run `revdepcheck::cloud_details(, "nprobust")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘nprobust-Ex.R’ failed + The error most likely occurred in: + + > ### Name: nprobust.plot + > ### Title: Graphical Presentation of Results from 'nprobust' Package. + > ### Aliases: nprobust.plot + > + > ### ** Examples + > + > x <- runif(500) + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# numbat + +
+ +* Version: 1.4.2 +* GitHub: https://github.com/kharchenkolab/numbat +* Source code: https://github.com/cran/numbat +* Date/Publication: 2024-09-20 12:20:07 UTC +* Number of recursive dependencies: 139 + +Run `revdepcheck::cloud_details(, "numbat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘numbat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_bulks + > ### Title: Plot a group of pseudobulk HMM profiles + > ### Aliases: plot_bulks + > + > ### ** Examples + > + > p = plot_bulks(bulk_example) + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.6Mb + sub-directories of 1Mb or more: + data 7.0Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘R.utils’ ‘optparse’ ‘vcfR’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# nuts + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/ropensci/nuts +* Source code: https://github.com/cran/nuts +* Date/Publication: 2024-07-13 10:50:02 UTC +* Number of recursive dependencies: 167 + +Run `revdepcheck::cloud_details(, "nuts")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘nuts.Rmd’ using knitr + ``` + +# nzelect + +
+ +* Version: 0.4.0 +* GitHub: NA +* Source code: https://github.com/cran/nzelect +* Date/Publication: 2017-10-02 20:35:23 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "nzelect")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘README.Rmd’ using rmarkdown + + Quitting from README.Rmd:63-82 [unnamed-chunk-3] + Error: processing vignette 'README.Rmd' failed with diagnostics: + C stack usage 9962996 is too close to the limit + --- failed re-building ‘README.Rmd’ + + SUMMARY: processing the following file failed: + ‘README.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.3Mb + sub-directories of 1Mb or more: + data 5.0Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 6409 marked UTF-8 strings + ``` + +# nzilbb.vowels + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/nzilbb/nzilbb_vowels +* Source code: https://github.com/cran/nzilbb.vowels +* Date/Publication: 2025-05-06 04:10:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "nzilbb.vowels")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘nzilbb.vowels-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_permutation_test + > ### Title: Create plot from 'permutation_test()'. + > ### Aliases: plot_permutation_test + > + > ### ** Examples + > + > onze_perm <- permutation_test( + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.2Mb + sub-directories of 1Mb or more: + data 4.5Mb + ``` + +# OBIC + +
+ +* Version: 3.0.3 +* GitHub: https://github.com/AgroCares/Open-Bodem-Index-Calculator +* Source code: https://github.com/cran/OBIC +* Date/Publication: 2024-09-09 08:30:02 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "OBIC")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘description-of-the-columns.Rmd’ using rmarkdown + --- finished re-building ‘description-of-the-columns.Rmd’ + + --- re-building ‘obic_introduction.Rmd’ using rmarkdown + ``` + +# occCite + +
+ +* Version: 0.5.9 +* GitHub: https://github.com/ropensci/occCite +* Source code: https://github.com/cran/occCite +* Date/Publication: 2024-10-28 13:30:06 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "occCite")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(occCite) + > + > test_check("occCite") + + OccCite query occurred on: 20 June, 2024 + + ... + ── Failure ('test-sumFig.R:40:3'): sumFig works when plotting only source by species ── + class(test[[1]][[1]]) not equal to "ggplot_built". + Lengths differ: 2 is not 1 + ── Failure ('test-sumFig.R:48:3'): sumFig works when plotting only aggregator by species ── + class(test[[1]][[1]]) not equal to "ggplot_built". + Lengths differ: 2 is not 1 + + [ FAIL 9 | WARN 1 | SKIP 20 | PASS 114 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘ape’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 7 marked UTF-8 strings + ``` + +# oddsratio + +
+ +* Version: 2.0.2 +* GitHub: https://github.com/pat-s/oddsratio +* Source code: https://github.com/cran/oddsratio +* Date/Publication: 2025-04-08 23:30:11 UTC +* Number of recursive dependencies: 64 + +Run `revdepcheck::cloud_details(, "oddsratio")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘oddsratio-Ex.R’ failed + The error most likely occurred in: + + > ### Name: insert_or + > ### Title: Insert odds ratios of GAM(M)s into smoothing function + > ### Aliases: insert_or + > + > ### ** Examples + > + > library(oddsratio) + ... + > insert_or(plot_object, or_object2, + + or_yloc = 2.1, values_yloc = 2, + + line_col = "green4", text_col = "black", + + rect_col = "green4", rect_alpha = 0.2, + + line_alpha = 1, line_type = "dashed", + + arrow_xloc_r = 0.01, arrow_xloc_l = -0.01, + + arrow_length = 0.01, rect = TRUE + + ) + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(plot_object)@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(oddsratio) + > + > test_check("oddsratio") + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 6 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Error ('test-insert-or.R:22:3'): check bevhaviour of ggplot_build (changed in ggplot2 v2.2) ── + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(plot_object)@layout`? + Backtrace: + ▆ + 1. ├─ggplot_build(plot_object)$layout at test-insert-or.R:22:3 + 2. └─S7:::`$.S7_object`(ggplot_build(plot_object), layout) at test-insert-or.R:22:3 + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 6 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘oddsratio.Rmd’ using rmarkdown + ``` + +# officer + +
+ +* Version: 0.6.8 +* GitHub: https://github.com/davidgohel/officer +* Source code: https://github.com/cran/officer +* Date/Publication: 2025-03-23 11:40:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "officer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘officer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: body_add_gg + > ### Title: Add a 'ggplot' in a 'Word' document + > ### Aliases: body_add_gg + > + > ### ** Examples + > + > if (require("ggplot2")) { + ... + + doc <- body_add_gg(doc, value = gg_plot, style = "centered", unit = "cm") + + } + + + + print(doc, target = tempfile(fileext = ".docx")) + + } + Loading required package: ggplot2 + Error in body_add_gg(doc, value = gg_plot, style = "centered") : + inherits(value, "gg") is not TRUE + Calls: body_add_gg -> stopifnot + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > suppressPackageStartupMessages({ + + library(testthat) + + library(officer) + + library(xml2) + + }) + > + > test_check("officer") + ... + 3. └─base::stopifnot(inherits(value, "gg")) + ── Error ('test-rtf-add.R:69:5'): rtf_add works with text, paragraphs, and plots (ggplot2 too) ── + Error in `UseMethod("rtf_add", value)`: no applicable method for 'rtf_add' applied to an object of class "c('ggplot', 'ggplot2::ggplot', 'ggplot2::gg', 'S7_object')" + Backtrace: + ▆ + 1. └─officer::rtf_add(doc, gg, width = 3, height = 4, ppr = center_par) at test-rtf-add.R:69:5 + + [ FAIL 5 | WARN 0 | SKIP 7 | PASS 1024 ] + Error: Test failures + Execution halted + ``` + +# ofpetrial + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/DIFM-Brain/ofpetrial +* Source code: https://github.com/cran/ofpetrial +* Date/Publication: 2024-12-11 23:00:02 UTC +* Number of recursive dependencies: 148 + +Run `revdepcheck::cloud_details(, "ofpetrial")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ofpetrial-Ex.R’ failed + The error most likely occurred in: + + > ### Name: check_ortho_with_chars + > ### Title: Check the orthogonality with field/topographic characteristics + > ### Aliases: check_ortho_with_chars + > + > ### ** Examples + > + > data(td_single_input) + ... + 28. │ └─rlang::list2(...) + 29. ├─ggExtra::ggMarginal(., type = "histogram") + 30. │ ├─scatPbuilt$plot + 31. │ └─S7:::`$.S7_object`(scatPbuilt, "plot") + 32. │ └─base::stop(msg, call. = FALSE) + 33. └─base::.handleSimpleError(...) + 34. └─purrr (local) h(simpleError(msg, call)) + 35. └─cli::cli_abort(...) + 36. └─rlang::abort(...) + Execution halted + ``` + +# ogrdbstats + +
+ +* Version: 0.5.2 +* GitHub: https://github.com/airr-community/ogrdbstats +* Source code: https://github.com/cran/ogrdbstats +* Date/Publication: 2024-11-03 06:10:02 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "ogrdbstats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ogrdbstats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: make_novel_base_grobs + > ### Title: Create plots showing base usage at selected locations in + > ### sequences based on novel alleles + > ### Aliases: make_novel_base_grobs + > + > ### ** Examples + > + > base_grobs = make_novel_base_grobs( + + example_rep$inferred_seqs, + + example_rep$input_sequences, + + 'V', + + FALSE + + ) + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Using_ogrdbstats.Rmd’ using rmarkdown + + Quitting from Using_ogrdbstats.Rmd:277-296 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! object is invalid: + - every label must be named. + --- + ... + Error: processing vignette 'Using_ogrdbstats.Rmd' failed with diagnostics: + object is invalid: + - every label must be named. + --- failed re-building ‘Using_ogrdbstats.Rmd’ + + SUMMARY: processing the following file failed: + ‘Using_ogrdbstats.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# OlinkAnalyze + +
+ +* Version: 4.2.0 +* GitHub: https://github.com/Olink-Proteomics/OlinkRPackage +* Source code: https://github.com/cran/OlinkAnalyze +* Date/Publication: 2025-02-24 21:40:08 UTC +* Number of recursive dependencies: 210 + +Run `revdepcheck::cloud_details(, "OlinkAnalyze")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘LOD.Rmd’ using rmarkdown + --- finished re-building ‘LOD.Rmd’ + + --- re-building ‘OutlierExclusion.Rmd’ using rmarkdown + --- finished re-building ‘OutlierExclusion.Rmd’ + + --- re-building ‘Vignett.Rmd’ using rmarkdown + --- finished re-building ‘Vignett.Rmd’ + + --- re-building ‘bridging_crossproduct.Rmd’ using rmarkdown + --- finished re-building ‘bridging_crossproduct.Rmd’ + + --- re-building ‘bridging_introduction.Rmd’ using rmarkdown + ``` + +# OmicNavigator + +
+ +* Version: 1.13.13 +* GitHub: https://github.com/abbvie-external/OmicNavigator +* Source code: https://github.com/cran/OmicNavigator +* Date/Publication: 2023-08-25 20:40:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "OmicNavigator")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > # Test files in inst/tinytest/ + > if (requireNamespace("tinytest", quietly = TRUE)) { + + suppressMessages(tinytest::test_package("OmicNavigator")) + + } + + testAdd.R..................... 0 tests + testAdd.R..................... 0 tests + ... + testPlot.R.................... 140 tests 1 fails + testPlot.R.................... 140 tests 1 fails + testPlot.R.................... 141 tests 1 fails + testPlot.R.................... 141 tests 1 fails + testPlot.R.................... 141 tests 1 fails + testPlot.R.................... 142 tests 1 fails + testPlot.R.................... 142 tests 1 fails + testPlot.R.................... 143 tests 1 fails Error in pm[[2]] : subscript out of bounds + Calls: suppressMessages ... plotStudy -> f -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘OmicNavigatorAPI.Rnw’ using Sweave + OmicNavigator R package version: 1.13.13 + The app is not installed. Install it with installApp() + Installing study "ABC" in /tmp/RtmpxlI4Gk/file1ce423f3d8cd + Exporting study "ABC" as an R package + Note: No maintainer email was specified. Using the placeholder: Unknown + Calculating pairwise overlaps. This may take a while... + Exported study to /tmp/RtmpxlI4Gk/ONstudyABC + Success! + ... + l.14 ^^M + + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘OmicNavigatorUsersGuide.Rnw’ + + SUMMARY: processing the following files failed: + ‘OmicNavigatorAPI.Rnw’ ‘OmicNavigatorUsersGuide.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# OmopSketch + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/OHDSI/OmopSketch +* Source code: https://github.com/cran/OmopSketch +* Date/Publication: 2025-05-15 15:00:06 UTC +* Number of recursive dependencies: 169 + +Run `revdepcheck::cloud_details(, "OmopSketch")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘summarise_clinical_tables_records.Rmd’ using rmarkdown + + Quitting from summarise_clinical_tables_records.Rmd:172-175 [unnamed-chunk-11] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + Error: processing vignette 'summarise_observation_period.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘summarise_observation_period.Rmd’ + + SUMMARY: processing the following files failed: + ‘summarise_clinical_tables_records.Rmd’ + ‘summarise_observation_period.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.3Mb + sub-directories of 1Mb or more: + doc 4.3Mb + ``` + +# onbrand + +
+ +* Version: 1.0.6 +* GitHub: https://github.com/john-harrold/onbrand +* Source code: https://github.com/cran/onbrand +* Date/Publication: 2024-09-23 15:00:03 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "onbrand")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Creating_Templated_Office_Workflows.Rmd’ using rmarkdown + + Quitting from Creating_Templated_Office_Workflows.Rmd:137-151 [unnamed-chunk-7] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `UseMethod()`: + ! no applicable method for 'ph_with' applied to an object of class "c('ggplot', 'ggplot2::ggplot', 'ggplot2::gg', 'S7_object')" + --- + Backtrace: + ... + --- failed re-building ‘Creating_Templated_Office_Workflows.Rmd’ + + --- re-building ‘Custom_Office_Templates.Rmd’ using rmarkdown + --- finished re-building ‘Custom_Office_Templates.Rmd’ + + SUMMARY: processing the following file failed: + ‘Creating_Templated_Office_Workflows.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# oncomsm + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/Boehringer-Ingelheim/oncomsm +* Source code: https://github.com/cran/oncomsm +* Date/Publication: 2023-04-17 07:00:02 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "oncomsm")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(dplyr) + + Attaching package: 'dplyr' + + The following objects are masked from 'package:stats': + + filter, lag + ... + 16. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 2 | PASS 59 ] + Deleting unused snapshots: + • plots/plot-mstate-srp-model-2.svg + • plots/plot-mstate-srp-model-3.svg + • plots/plot-srp-model-1.svg + • plots/plot-srp-model-2.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘avoiding-bias.Rmd’ using rmarkdown + + Quitting from avoiding-bias.Rmd:34-46 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'avoiding-bias.Rmd' failed with diagnostics: + Can't add `plt_pfs` to a object. + ... + Quitting from oncomsm.Rmd:210-215 [plotting-the-prior] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'oncomsm.Rmd' failed with diagnostics: + Can't add `plt_pfs` to a object. + --- failed re-building ‘oncomsm.Rmd’ + + --- re-building ‘prior-choice.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 58.2Mb + sub-directories of 1Mb or more: + doc 1.1Mb + libs 56.0Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# OneSampleLogRankTest + +
+ +* Version: 0.9.2 +* GitHub: NA +* Source code: https://github.com/cran/OneSampleLogRankTest +* Date/Publication: 2024-02-03 12:30:15 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "OneSampleLogRankTest")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘OneSampleLogRankTest-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotKM + > ### Title: Plot Kaplan-Meier Curve against Population + > ### Aliases: plotKM + > + > ### ** Examples + > + > # load data + ... + 11. └─base_ops[[.Generic]](e1, e2) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. └─ggplot2::ggplot_add(object, p, objectname) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘oneSampleLogRankTest.Rmd’ using rmarkdown + + Quitting from oneSampleLogRankTest.Rmd:73-77 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'oneSampleLogRankTest.Rmd' failed with diagnostics: + Can't add `ggtheme` to a object. + --- failed re-building ‘oneSampleLogRankTest.Rmd’ + + SUMMARY: processing the following file failed: + ‘oneSampleLogRankTest.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# onewaytests + +
+ +* Version: 3.0 +* GitHub: NA +* Source code: https://github.com/cran/onewaytests +* Date/Publication: 2023-10-01 22:00:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "onewaytests")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘onewaytests-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gplot + > ### Title: Box-and-Whisker, Violin Plots and Error Bars + > ### Aliases: gplot + > ### Keywords: functions + > + > ### ** Examples + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# opitools + +
+ +* Version: 1.8.0 +* GitHub: https://github.com/MAnalytics/opitools +* Source code: https://github.com/cran/opitools +* Date/Publication: 2021-07-29 15:30:02 UTC +* Number of recursive dependencies: 102 + +Run `revdepcheck::cloud_details(, "opitools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘opitools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: word_distrib + > ### Title: Words Distribution + > ### Aliases: word_distrib + > + > ### ** Examples + > + > + ... + > tweets_dat <- data.frame(text=tweets[,1]) + > plt = word_distrib(textdoc = tweets_dat) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the opitools package. + Please report the issue at . + Warning in get_plot_component(plot, "guide-box") : + Multiple components found; returning the first one. To return all, use `return_all = TRUE`. + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(get_x)@layout`? + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) word_imp.Rd:14: Lost braces + 14 | number of individual records. An \code{n} x code{2} dataframe can + | ^ + ``` + +# opticskxi + +
+ +* Version: 1.2.1 +* GitHub: NA +* Source code: https://github.com/cran/opticskxi +* Date/Publication: 2025-03-09 22:50:02 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "opticskxi")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(opticskxi) + > + > test_check("opticskxi") + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 27 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test-optics_plots.R:21:1'): ggplot_kxi ──────────────────────────── + ggplot_kxi_metrics(kxi) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + Backtrace: + ▆ + 1. └─opticskxi (local) test_ggplot_kxi() + 2. └─testthat::expect_is(ggplot_kxi_metrics(kxi), "gg") at test-optics_plots.R:19:3 + + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 27 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘ensemble_metrics.Rnw’ using Sweave + Error: processing vignette 'ensemble_metrics.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'ensemble_metrics.tex' failed. + LaTeX errors: + ! Package babel Error: Unknown option 'english'. Either you misspelled it + (babel) or the language definition file english.ldf + (babel) was not found. + (babel) There is a locale ini file for this language. + (babel) If it’s the main language, try adding `provide=*' + ... + l.4163 \ProcessOptions* + + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building 'opticskxi.Rnw' + + SUMMARY: processing the following files failed: + ‘ensemble_metrics.Rnw’ ‘opticskxi.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ordinalsimr + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/NeuroShepherd/ordinalsimr +* Source code: https://github.com/cran/ordinalsimr +* Date/Publication: 2025-03-07 10:10:02 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "ordinalsimr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Error ('test-utils.R:70:3'): test the plot_power() function ───────────────── + Error in `expect_match(plot_obj$labels$ymin, "lower_power_bound")`: is.character(act$val) is not TRUE + Backtrace: + ▆ + 1. └─testthat::expect_match(plot_obj$labels$ymin, "lower_power_bound") at test-utils.R:70:3 + 2. └─base::stopifnot(is.character(act$val)) + + [ FAIL 1 | WARN 0 | SKIP 1 | PASS 69 ] + Error: Test failures + Execution halted + ``` + +# ordr + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/corybrunson/ordr +* Source code: https://github.com/cran/ordr +* Date/Publication: 2022-10-20 20:52:35 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "ordr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ordr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: biplot-stats + > ### Title: Convenience stats for row and column matrix factors + > ### Aliases: biplot-stats stat_rows_ellipse stat_cols_ellipse + > ### stat_rows_center stat_cols_center stat_rows_star stat_cols_star + > ### stat_rows_chull stat_cols_chull stat_rows_cone stat_cols_cone + > ### stat_rows_scale stat_cols_scale stat_rows_spantree stat_cols_spantree + > + ... + Backtrace: + ▆ + 1. ├─iris_pca %>% ggbiplot(aes(color = species)) + 2. └─ordr::ggbiplot(., aes(color = species)) + 3. └─ggplot2::ggplot(data = ordination, mapping = mapping, environment = parent.frame()) + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot2, class_any)`(data = ``, mapping = ``, ..., environment = ``) + 6. └─cli::cli_abort(...) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ordr) + Loading required package: ggplot2 + > + > test_check("ordr") + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 181 ] + + ... + 1. └─ordr::ggbiplot(m) at test-stat-spantree.r:10:5 + 2. └─ggplot2::ggplot(data = ordination, mapping = mapping, environment = parent.frame()) + 3. ├─S7::S7_dispatch() + 4. └─ggplot2 (local) `method(ggplot2, class_any)`(data = ``, mapping = ``, ..., environment = ``) + 5. └─cli::cli_abort(...) + 6. └─rlang::abort(...) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 181 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘cmds-variables.rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) lra-ord.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) lra-ord.Rd:55-56: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) lra-ord.Rd:57-58: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) lra-ord.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) lra-ord.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 4 marked UTF-8 strings + ``` + +# OTclust + +
+ +* Version: 1.0.6 +* GitHub: NA +* Source code: https://github.com/cran/OTclust +* Date/Publication: 2023-10-06 14:40:07 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "OTclust")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘OTclust-Ex.R’ failed + The error most likely occurred in: + + > ### Name: otplot + > ### Title: Visualize a partition on 2 dimensional space + > ### Aliases: otplot + > + > ### ** Examples + > + > data(sim1) + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘OTclust.Rmd’ using rmarkdown + + Quitting from OTclust.Rmd:86-91 [unnamed-chunk-7] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'OTclust.Rmd' failed with diagnostics: + Can't combine `..1` and `..2` . + --- failed re-building ‘OTclust.Rmd’ + + SUMMARY: processing the following file failed: + ‘OTclust.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# OutliersO3 + +
+ +* Version: 0.6.3 +* GitHub: NA +* Source code: https://github.com/cran/OutliersO3 +* Date/Publication: 2020-04-25 00:10:02 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "OutliersO3")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘OutliersO3-Ex.R’ failed + The error most likely occurred in: + + > ### Name: O3plotColours + > ### Title: Set colours for O3 plots + > ### Aliases: O3plotColours + > + > ### ** Examples + > + > c1 <- O3prep(stackloss, k1=2, method=c("HDo", "BAC"), tolHDo=0.025, tolBAC=0.01) + > c2 <- O3plotM(c1) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the OutliersO3 package. + Please report the issue to the authors. + > c2$gO3 + Error: C stack usage 9962212 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘DrawingO3plots.Rmd’ using rmarkdown + + Quitting from DrawingO3plots.Rmd:24-32 [unnamed-chunk-1] + Error: processing vignette 'DrawingO3plots.Rmd' failed with diagnostics: + C stack usage 9963732 is too close to the limit + --- failed re-building ‘DrawingO3plots.Rmd’ + + --- re-building ‘MultTolLevels.Rmd’ using rmarkdown + + ... + --- failed re-building ‘PCPsO3.Rmd’ + + --- re-building ‘xtraO3methods.Rmd’ using rmarkdown + --- finished re-building ‘xtraO3methods.Rmd’ + + SUMMARY: processing the following files failed: + ‘DrawingO3plots.Rmd’ ‘MultTolLevels.Rmd’ ‘PCPsO3.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# oxcAAR + +
+ +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/oxcAAR +* Date/Publication: 2021-07-05 17:20:02 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "oxcAAR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(oxcAAR) + > + > test_check("oxcAAR") + [ FAIL 1 | WARN 2 | SKIP 1 | PASS 99 ] + + ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ + ... + 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) + 6. ├─base::plot(this_date) + 7. └─oxcAAR:::plot.oxcAARCalibratedDate(this_date) + 8. └─oxcAAR:::plotoxcAARDateGGPlot2(x, ...) + 9. ├─ggplot2::ggplot_build(graph)$layout + 10. └─S7:::`$.S7_object`(ggplot2::ggplot_build(graph), "layout") + + [ FAIL 1 | WARN 2 | SKIP 1 | PASS 99 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘basic-usage.Rmd’ using rmarkdown + trying URL 'https://c14.arch.ox.ac.uk/OxCalDistribution.zip' + + Quitting from basic-usage.Rmd:23-31 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `invokeRestart()`: + ! no 'restart' 'muffleWarning' found + --- + ... + + Error: processing vignette 'basic-usage.Rmd' failed with diagnostics: + no 'restart' 'muffleWarning' found + --- failed re-building ‘basic-usage.Rmd’ + + SUMMARY: processing the following file failed: + ‘basic-usage.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# pacu + +
+ +* Version: 0.1.44 +* GitHub: https://github.com/cldossantos/pacu +* Source code: https://github.com/cran/pacu +* Date/Publication: 2024-12-17 10:20:02 UTC +* Number of recursive dependencies: 139 + +Run `revdepcheck::cloud_details(, "pacu")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘pacu.Rmd’ using rmarkdown + --- finished re-building ‘pacu.Rmd’ + + --- re-building ‘pacu_faq.Rmd’ using rmarkdown + --- finished re-building ‘pacu_faq.Rmd’ + + --- re-building ‘pacu_sat.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.1Mb + sub-directories of 1Mb or more: + doc 1.9Mb + extdata 4.8Mb + ``` + +# pafr + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/dwinter/pafr +* Source code: https://github.com/cran/pafr +* Date/Publication: 2020-12-08 10:20:12 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "pafr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pafr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: dotplot + > ### Title: Generate a dot plot from a paf alignment + > ### Aliases: dotplot + > + > ### ** Examples + > + > ali <- read_paf( system.file("extdata", "fungi.paf", package="pafr") ) + ... + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the pafr package. + Please report the issue at . + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the pafr package. + Please report the issue at . + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pafr) + Loading required package: ggplot2 + > + > test_check("pafr") + [ FAIL 6 | WARN 2 | SKIP 0 | PASS 58 ] + + ... + 6. ├─pafr::dotplot(ali_pafr) + 7. │ ├─base::`$<-`(`*tmp*`, "seq_map_fxn", value = ``) + 8. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "seq_map_fxn", value = ``) + 9. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 10. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 11. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 6 | WARN 2 | SKIP 0 | PASS 58 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Introduction_to_pafr.Rmd’ using rmarkdown + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# palette + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/christopherkenny/palette +* Source code: https://github.com/cran/palette +* Date/Publication: 2024-03-15 10:40:02 UTC +* Number of recursive dependencies: 57 + +Run `revdepcheck::cloud_details(, "palette")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plot.R:4:3'): plotting works no vdiffr ─────────────────────── + `p` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 1 | WARN 0 | SKIP 8 | PASS 28 ] + Deleting unused snapshots: + • plot/plot-palette-base.svg + Error: Test failures + Execution halted + ``` + +# paletteer + +
+ +* Version: 1.6.0 +* GitHub: https://github.com/EmilHvitfeldt/paletteer +* Source code: https://github.com/cran/paletteer +* Date/Publication: 2024-01-21 18:00:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "paletteer")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(paletteer) + > + > test_check("paletteer") + NULL + NULL + NULL + ... + • vdiffr_palette_check/vangogh.svg + • vdiffr_palette_check/vapeplot.svg + • vdiffr_palette_check/vaporwave.svg + • vdiffr_palette_check/viridis.svg + • vdiffr_palette_check/warhol.svg + • vdiffr_palette_check/werpals.svg + • vdiffr_palette_check/wesanderson.svg + • vdiffr_palette_check/yarrr.svg + Error: Test failures + Execution halted + ``` + +# palettes + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/mccarthy-m-g/palettes +* Source code: https://github.com/cran/palettes +* Date/Publication: 2024-07-13 23:10:01 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "palettes")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘palettes-Ex.R’ failed + The error most likely occurred in: + + > ### Name: scale_colour_palette_d + > ### Title: Colour scales from colour vectors and colour palettes + > ### Aliases: scale_colour_palette_d scale_fill_palette_d + > ### scale_colour_palette_c scale_fill_palette_c scale_colour_palette_b + > ### scale_fill_palette_b scale_color_palette_d scale_color_palette_c + > ### scale_color_palette_b + > + ... + 24. └─vctrs::vec_default_cast(...) + 25. ├─base::withRestarts(...) + 26. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 27. │ └─base (local) doWithOneRestart(return(expr), restart) + 28. └─vctrs::stop_incompatible_cast(...) + 29. └─vctrs::stop_incompatible_type(...) + 30. └─vctrs:::stop_incompatible(...) + 31. └─vctrs:::stop_vctrs(...) + 32. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(palettes) + > + > test_check("palettes") + [ FAIL 3 | WARN 0 | SKIP 29 | PASS 60 ] + + ══ Skipped tests (29) ══════════════════════════════════════════════════════════ + ... + ── Failure ('test-colour.R:90:3'): plotting works ────────────────────────────── + plot(x) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-palette.R:52:3'): plotting works ───────────────────────────── + plot(x) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-palette.R:53:3'): plotting works ───────────────────────────── + plot(y) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 3 | WARN 0 | SKIP 29 | PASS 60 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘biscale.Rmd’ using rmarkdown + ``` + +# pander + +
+ +* Version: 0.6.6 +* GitHub: https://github.com/rapporter/pander +* Source code: https://github.com/cran/pander +* Date/Publication: 2025-03-01 01:30:02 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "pander")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘evals.Rmd’ using rmarkdown + + Quitting from evals.Rmd:100-105 [unnamed-chunk-9] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + --- finished re-building ‘pander.Rmd’ + + --- re-building ‘pandoc_table.Rmd’ using rmarkdown + --- finished re-building ‘pandoc_table.Rmd’ + + SUMMARY: processing the following file failed: + ‘evals.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# panelView + +
+ +* Version: 1.1.18 +* GitHub: NA +* Source code: https://github.com/cran/panelView +* Date/Publication: 2024-06-17 07:20:02 UTC +* Number of recursive dependencies: 30 + +Run `revdepcheck::cloud_details(, "panelView")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘panelView-Ex.R’ failed + The error most likely occurred in: + + > ### Name: panelview + > ### Title: Panel data visualization + > ### Aliases: panelview + > + > ### ** Examples + > + > library(panelView) + ... + 6. └─ggplot2::ggplot_build(x) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 9. └─ggplot2:::plot_theme(plot) + 10. └─ggplot2:::check_theme(theme) + 11. └─base::mapply(...) + 12. └─ggplot2 (local) ``(...) + 13. └─cli::cli_abort(...) + 14. └─rlang::abort(...) + Execution halted + ``` + +# ParamHelpers + +
+ +* Version: 1.14.2 +* GitHub: https://github.com/mlr-org/ParamHelpers +* Source code: https://github.com/cran/ParamHelpers +* Date/Publication: 2025-01-09 22:50:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "ParamHelpers")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘run-all.R’ + Running the tests in ‘tests/run-all.R’ failed. + Complete output: + > library(testthat) + > library(BBmisc) + + Attaching package: 'BBmisc' + + The following object is masked from 'package:base': + + ... + ── Failure ('test_plotYTrace.R:29:3'): plotYTrace works ──────────────────────── + Check on 'pl' failed: Must inherit from class 'gg', but has classes 'ggplot','ggplot2::ggplot','ggplot2::gg','S7_object' + Backtrace: + ▆ + 1. └─checkmate::expect_class(pl, "gg") at test_plotYTrace.R:29:3 + 2. └─checkmate::makeExpectation(x, res, info, label) + + [ FAIL 3 | WARN 0 | SKIP 1 | PASS 1040 ] + Error: Test failures + Execution halted + ``` + +# paramix + +
+ +* Version: 0.0.1 +* GitHub: NA +* Source code: https://github.com/cran/paramix +* Date/Publication: 2024-12-09 19:30:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "paramix")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘intro.Rmd’ using rmarkdown + ``` + +# partition + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/USCbiostats/partition +* Source code: https://github.com/cran/partition +* Date/Publication: 2024-10-09 17:00:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "partition")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(partition) + > + > test_check("partition") + Starting 2 test processes + [ FAIL 9 | WARN 0 | SKIP 0 | PASS 202 ] + ... + ── Failure ('test-plots-are-plotting.R:23:3'): plots are plotting ────────────── + ggplot2::ggplot_build(g7) inherits from 'ggplot2::ggplot_built'/'S7_object' not 'ggplot_built'. + ── Failure ('test-plots-are-plotting.R:26:3'): plots are plotting ────────────── + ggplot2::ggplot_build(g8) inherits from 'ggplot2::ggplot_built'/'S7_object' not 'ggplot_built'. + ── Failure ('test-plots-are-plotting.R:29:3'): plots are plotting ────────────── + ggplot2::ggplot_build(g8) inherits from 'ggplot2::ggplot_built'/'S7_object' not 'ggplot_built'. + + [ FAIL 9 | WARN 0 | SKIP 0 | PASS 202 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.0Mb + sub-directories of 1Mb or more: + libs 6.9Mb + ``` + +# partR2 + +
+ +* Version: 0.9.2 +* GitHub: https://github.com/mastoffel/partR2 +* Source code: https://github.com/cran/partR2 +* Date/Publication: 2024-03-04 13:20:02 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "partR2")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘Using_partR2.Rmd’ using rmarkdown + + Quitting from Using_partR2.Rmd:130-137 [unnamed-chunk-10] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Using_partR2.Rmd' failed with diagnostics: + Can't add `p2` to a object. + --- failed re-building ‘Using_partR2.Rmd’ + + SUMMARY: processing the following file failed: + ‘Using_partR2.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘methods’ + All declared Imports should be used. + ``` + +# PAsso + +
+ +* Version: 0.1.10 +* GitHub: https://github.com/XiaoruiZhu/PAsso +* Source code: https://github.com/cran/PAsso +* Date/Publication: 2021-06-18 09:20:08 UTC +* Number of recursive dependencies: 179 + +Run `revdepcheck::cloud_details(, "PAsso")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PAsso-Ex.R’ failed + The error most likely occurred in: + + > ### Name: diagnostic.plot + > ### Title: Residual-based diagnostic plots + > ### Aliases: diagnostic.plot diagnostic.plot.default diagnostic.plot.resid + > ### diagnostic.plot.PAsso diagnostic.plot.glm diagnostic.plot.clm + > ### diagnostic.plot.lrm diagnostic.plot.orm diagnostic.plot.polr + > + > ### ** Examples + ... + > + > PAsso_3v <- PAsso(responses = c("PreVote.num", "PID", "selfLR"), + + adjustments = c("income.num", "age", "edu.year"), + + data = ANES2016, uni.model = "probit", + + method = c("kendall"), + + resids.type = "surrogate", jitter = "latent") + > + > diag_p1 <- diagnostic.plot(object = PAsso_3v, output = "qq") + Error: C stack usage 9964532 is too close to the limit + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘PResiduals’ + ``` + +# patchwork + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/thomasp85/patchwork +* Source code: https://github.com/cran/patchwork +* Date/Publication: 2024-09-16 09:30:02 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "patchwork")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘patchwork-Ex.R’ failed + The error most likely occurred in: + + > ### Name: area + > ### Title: Specify a plotting area in a layout + > ### Aliases: area + > + > ### ** Examples + > + > library(ggplot2) + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(patchwork) + > + > test_check("patchwork") + [ FAIL 12 | WARN 1 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + • layout/insets-can-be-changed.svg + • layout/other-alignments-work.svg + • layout/patchworks-can-be-inset.svg + • layout/setting-heights-as-units.svg + • layout/setting-heights.svg + • layout/setting-nrow.svg + • layout/setting-widths-as-units.svg + • layout/setting-widths.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘patchwork.Rmd’ using rmarkdown + + Quitting from patchwork.Rmd:63-65 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'patchwork.Rmd' failed with diagnostics: + Can't add `p2` to a object. + --- failed re-building ‘patchwork.Rmd’ + + SUMMARY: processing the following file failed: + ‘patchwork.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# Path.Analysis + +
+ +* Version: 0.1 +* GitHub: https://github.com/abeyran/Path.Analysis +* Source code: https://github.com/cran/Path.Analysis +* Date/Publication: 2024-09-25 08:20:05 UTC +* Number of recursive dependencies: 203 + +Run `revdepcheck::cloud_details(, "Path.Analysis")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘Path.Analysis_manual.Rmd’ using rmarkdown + + Quitting from Path.Analysis_manual.Rmd:158-161 [Correlogram of dtraw dataset, excluding the first column on the left] + Error: processing vignette 'Path.Analysis_manual.Rmd' failed with diagnostics: + C stack usage 9963876 is too close to the limit + --- failed re-building ‘Path.Analysis_manual.Rmd’ + + SUMMARY: processing the following file failed: + ‘Path.Analysis_manual.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘ComplexHeatmap’ ‘mathjaxr’ + All declared Imports should be used. + ``` + +# pathfindR + +
+ +* Version: 2.4.2 +* GitHub: https://github.com/egeulgen/pathfindR +* Source code: https://github.com/cran/pathfindR +* Date/Publication: 2025-02-17 09:30:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "pathfindR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pathfindR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: combine_pathfindR_results + > ### Title: Combine 2 pathfindR Results + > ### Aliases: combine_pathfindR_results + > + > ### ** Examples + > + > combined_results <- combine_pathfindR_results(example_pathfindR_output, example_comparison_output) + ... + 1. └─pathfindR::combine_pathfindR_results(...) + 2. ├─graphics::plot(combined_results_graph(combined_df)) + 3. └─pathfindR::combined_results_graph(combined_df) + 4. └─pathfindR (local) create_graph(g, for_coloring, size) + 5. └─ggraph::geom_edge_link(alpha = 0.8, colour = "darkgrey") + 6. └─ggplot2::layer(...) + 7. └─ggplot2:::validate_mapping(mapping, call_env) + 8. └─cli::cli_abort(msg, call = call) + 9. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat-active_snw.R’ + Running ‘testthat-clustering.R’ + Running ‘testthat-comparison.R’ + Running the tests in ‘tests/testthat-comparison.R’ failed. + Complete output: + > library(testthat) + > library(pathfindR) + Loading required package: pathfindR.data + ############################################################################## + Welcome to pathfindR! + ... + 5. └─pathfindR (local) create_graph(g, for_coloring, size) + 6. └─ggraph::geom_edge_link(alpha = 0.8, colour = "darkgrey") + 7. └─ggplot2::layer(...) + 8. └─ggplot2:::validate_mapping(mapping, call_env) + 9. └─cli::cli_abort(msg, call = call) + 10. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘comparing_results.Rmd’ using rmarkdown + + Quitting from comparing_results.Rmd:33-35 [compare_graph1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'comparing_results.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘comparing_results.Rmd’ + + --- re-building ‘intro_vignette.Rmd’ using rmarkdown + ``` + +# pathviewr + +
+ +* Version: 1.1.7 +* GitHub: https://github.com/ropensci/pathviewr +* Source code: https://github.com/cran/pathviewr +* Date/Publication: 2023-03-08 08:10:05 UTC +* Number of recursive dependencies: 189 + +Run `revdepcheck::cloud_details(, "pathviewr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pathviewr) + > #library(vdiffr) + > + > test_check("pathviewr") + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 286 ] + + ... + ── Error ('test-plot_by_subject.R:168:3'): elev views wrangled correctly via tidyverse ── + Error in `expect_match(elev_all_plots[[3]][[4]][["labels"]][["x"]], "position_height")`: is.character(act$val) is not TRUE + Backtrace: + ▆ + 1. └─testthat::expect_match(...) at test-plot_by_subject.R:168:3 + 2. └─base::stopifnot(is.character(act$val)) + + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 286 ] + Error: Test failures + Execution halted + ``` + +# PatientLevelPrediction + +
+ +* Version: 6.4.1 +* GitHub: https://github.com/OHDSI/PatientLevelPrediction +* Source code: https://github.com/cran/PatientLevelPrediction +* Date/Publication: 2025-04-20 09:40:02 UTC +* Number of recursive dependencies: 215 + +Run `revdepcheck::cloud_details(, "PatientLevelPrediction")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PatientLevelPrediction-Ex.R’ failed + The error most likely occurred in: + + > ### Name: outcomeSurvivalPlot + > ### Title: Plot the outcome incidence over time + > ### Aliases: outcomeSurvivalPlot + > + > ### ** Examples + > + > ## Don't show: + ... + Population created in 0.0436 secs + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggpubr package. + Please report the issue at . + Warning: Ignoring unknown labels: + • `fill = "Strata"` + • `linetype = "1"` + Error: Can't get S7 properties with `$`. Did you mean `g@data`? + Execution halted + ``` + +# patientProfilesVis + +
+ +* Version: 2.0.9 +* GitHub: https://github.com/openanalytics/patientProfilesVis +* Source code: https://github.com/cran/patientProfilesVis +* Date/Publication: 2024-06-18 09:00:02 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "patientProfilesVis")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘patientProfiles-template-SDTM.Rmd’ using rmarkdown + --- finished re-building ‘patientProfiles-template-SDTM.Rmd’ + + --- re-building ‘patientProfilesVis-introduction.Rmd’ using rmarkdown + + Quitting from patientProfilesVis-introduction.Rmd:167-171 [text-wideFormat-include] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ... + + Error: processing vignette 'patientProfilesVis-introduction.Rmd' failed with diagnostics: + The `plot.margin` theme element must be a vector of length 4 + --- failed re-building ‘patientProfilesVis-introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘patientProfilesVis-introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(patientProfilesVis) + > + > test_check("patientProfilesVis") + [ FAIL 41 | WARN 0 | SKIP 20 | PASS 280 ] + + ══ Skipped tests (20) ══════════════════════════════════════════════════════════ + ... + 18. └─base::lapply(X = X, FUN = FUN, ...) + 19. └─patientProfilesVis (local) FUN(X[[i]], ...) + 20. ├─base::unlist(...) + 21. ├─base::lapply(...) + 22. ├─ggplot_build(gg)$data + 23. └─S7:::`$.S7_object`(ggplot_build(gg), "data") + + [ FAIL 41 | WARN 0 | SKIP 20 | PASS 280 ] + Error: Test failures + Execution halted + ``` + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + doc 5.2Mb + ``` + +# patternplot + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/patternplot +* Date/Publication: 2020-04-21 12:20:09 UTC +* Number of recursive dependencies: 58 + +Run `revdepcheck::cloud_details(, "patternplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘patternplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: imagebar + > ### Title: Plot a bar chart with bars filled with png and jpeg images. + > ### Aliases: imagebar + > + > ### ** Examples + > + > library(patternplot) + ... + > #Example 1 + > data <- read.csv(system.file("extdata", "monthlyexp.csv", package="patternplot")) + > data<-data[which(data$Location=='City 1'),] + > x<-factor(data$Type, c('Housing', 'Food', 'Childcare')) + > y<-data$Amount + > pattern.type<-list(housing, food, childcare) + > imagebar(data,x, y,group=NULL,pattern.type=pattern.type,vjust=-1, hjust=0.5, + + frame.color='black',ylab='Monthly Expenses, Dollars')+ggtitle('(A) Bar Chart with Images') + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(bplot)@data`? + Execution halted + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +* checking installed package size ... NOTE + ``` + installed size is 5.9Mb + sub-directories of 1Mb or more: + doc 1.4Mb + libs 3.6Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# PCMBase + +
+ +* Version: 1.2.14 +* GitHub: https://github.com/venelin/PCMBase +* Source code: https://github.com/cran/PCMBase +* Date/Publication: 2024-03-15 20:10:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "PCMBase")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PCMBase-Ex.R’ failed + The error most likely occurred in: + + > ### Name: PCMTree + > ### Title: Create a PCMTree object from a phylo object + > ### Aliases: PCMTree + > + > ### ** Examples + > + > tree <- ape::rtree(8) + ... + Please report the issue at . + Warning in fortify(data, ...) : Arguments in `...` must be used. + ✖ Problematic arguments: + • as.Date = as.Date + • yscale_mapping = yscale_mapping + • right = right + • hang = hang + ℹ Did you misspell an argument name? + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘PCMBase.Rmd’ using rmarkdown + + Quitting from PCMBase.Rmd:288-300 [unnamed-chunk-15] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + --- finished re-building ‘PCMParam.Rmd’ + + --- re-building ‘PCMTracePruning.Rmd’ using rmarkdown + --- finished re-building ‘PCMTracePruning.Rmd’ + + SUMMARY: processing the following files failed: + ‘PCMBase.Rmd’ ‘PCMCreateModel.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# pcpr + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/Columbia-PRIME/pcpr +* Source code: https://github.com/cran/pcpr +* Date/Publication: 2025-03-27 18:20:02 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "pcpr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘pcp-applied.Rmd’ using rmarkdown + ``` + +# pcr + +
+ +* Version: 1.2.2 +* GitHub: https://github.com/MahShaaban/pcr +* Source code: https://github.com/cran/pcr +* Date/Publication: 2020-04-01 06:10:02 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "pcr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pcr) + > + > test_check("pcr") + [ FAIL 12 | WARN 1 | SKIP 0 | PASS 74 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test_plotting_fun.R:68:3'): .pcr_plot_assess returns an efficiency plot ── + class(gg) not identical to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test_plotting_fun.R:79:3'): .pcr_plot_assess returns standard_curve plots ── + class(gg) not identical to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 12 | WARN 1 | SKIP 0 | PASS 74 ] + Error: Test failures + Execution halted + ``` + +# pctax + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/Asa12138/pctax +* Source code: https://github.com/cran/pctax +* Date/Publication: 2024-12-02 10:00:02 UTC +* Number of recursive dependencies: 253 + +Run `revdepcheck::cloud_details(, "pctax")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pctax-Ex.R’ failed + The error most likely occurred in: + + > ### Name: as.b_dist + > ### Title: Transfer dist to b_dist + > ### Aliases: as.b_dist plot.dist plot.b_dist + > + > ### ** Examples + > + > data(otutab, package = "pcutils") + > mat_dist(otutab) %>% as.b_dist(., group_df = metadata["Group"]) -> aa + > plot(aa) + > plot(aa, mode = 2) + Error: Can't get S7 properties with `$`. Did you mean `plot@data`? + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 30689 marked UTF-8 strings + ``` + +# pcutils + +
+ +* Version: 0.2.8 +* GitHub: https://github.com/Asa12138/pcutils +* Source code: https://github.com/cran/pcutils +* Date/Publication: 2025-03-27 06:10:02 UTC +* Number of recursive dependencies: 300 + +Run `revdepcheck::cloud_details(, "pcutils")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pcutils-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gghist + > ### Title: gg histogram + > ### Aliases: gghist + > + > ### ** Examples + > + > if (requireNamespace("ggpubr")) { + + gghist(rnorm(100)) + + } + Warning: Using `bins = 30` by default. Pick better value with the argument `bins`. + Warning: `geom_vline()`: Ignoring `mapping` because `xintercept` was provided. + Warning: `geom_vline()`: Ignoring `data` because `xintercept` was provided. + Error: Can't get S7 properties with `$`. Did you mean `p1@layout`? + Execution halted + ``` + +# pcvr + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/danforthcenter/pcvr +* Source code: https://github.com/cran/pcvr +* Date/Publication: 2025-04-16 13:10:02 UTC +* Number of recursive dependencies: 191 + +Run `revdepcheck::cloud_details(, "pcvr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pcvr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: frem + > ### Title: Variance partitioning using Full Random Effects Models + > ### Aliases: frem + > + > ### ** Examples + > + > + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pcvr) + > + > test_check("pcvr") + params are not uniform length, values are being recycled to fit max length + logistic nls model: + + ... + 16. └─ggplot2:::add_ggplot(e1, e2, e2name) + 17. └─ggplot2::ggplot_add(object, p, objectname) + 18. ├─S7::S7_dispatch() + 19. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 20. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 21. └─rlang::abort(...) + + [ FAIL 7 | WARN 1 | SKIP 58 | PASS 809 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘bellwether.Rmd’ using rmarkdown + ``` + +# pdxTrees + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/mcconvil/pdxTrees +* Source code: https://github.com/cran/pdxTrees +* Date/Publication: 2020-08-17 14:00:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "pdxTrees")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘pdxTrees-vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# pedbp + +
+ +* Version: 2.0.2 +* GitHub: https://github.com/dewittpe/pedbp +* Source code: https://github.com/cran/pedbp +* Date/Publication: 2025-01-07 20:40:01 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "pedbp")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test-bmi_for_age.R’ + Running ‘test-bp-by-source.R’ + Running ‘test-bp_cdf.R’ + Running the tests in ‘tests/test-bp_cdf.R’ failed. + Complete output: + > library(pedbp) + > + > ################################################################################ + > x <- bp_cdf(age = 96, male = 1, sbp = 103, dbp = 55) + > stopifnot(identical(class(x), c("gg", "ggplot"))) + Error: identical(class(x), c("gg", "ggplot")) is not TRUE + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.1Mb + sub-directories of 1Mb or more: + libs 5.3Mb + ``` + +# penaltyLearning + +
+ +* Version: 2024.9.3 +* GitHub: https://github.com/tdhock/penaltyLearning +* Source code: https://github.com/cran/penaltyLearning +* Date/Publication: 2024-10-02 04:30:02 UTC +* Number of recursive dependencies: 57 + +Run `revdepcheck::cloud_details(, "penaltyLearning")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > data.table::setDTthreads(1) + > if(require(testthat))test_check("penaltyLearning") + Loading required package: testthat + Loading required package: penaltyLearning + problem lo hi + + 1: 1 1 -1 + ... + 96. └─directlabels::direct.label.ggplot(gg, "lasso.labels") + 97. └─directlabels::geom_dl(...) + 98. └─ggplot2::layer(...) + 99. └─ggplot2:::validate_mapping(mapping, call_env) + 100. └─cli::cli_abort(msg, call = call) + 101. └─rlang::abort(...) + + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 180 ] + Error: Test failures + Execution halted + ``` + +# PepMapViz + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/PepMapViz +* Date/Publication: 2024-11-13 14:00:13 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "PepMapViz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PepMapViz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: create_peptide_plot + > ### Title: Create a peptide Plot + > ### Aliases: create_peptide_plot + > + > ### ** Examples + > + > data <- data.frame( + ... + Error in `facet_nested()`: + ! The `nest_line` argument must be or inherit from + . + Backtrace: + ▆ + 1. └─PepMapViz::create_peptide_plot(...) + 2. └─ggh4x::facet_nested(...) + 3. └─cli::cli_abort("The {.arg nest_line} argument must be {.cls element_blank} or inherit \\\n from {.cls element_line}.") + 4. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘PepMapViz.Rmd’ using rmarkdown + + Quitting from PepMapViz.Rmd:158-215 [unnamed-chunk-6] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'PepMapViz.Rmd' failed with diagnostics: + Can't add `new_scale_fill()` to a object. + --- failed re-building ‘PepMapViz.Rmd’ + + SUMMARY: processing the following file failed: + ‘PepMapViz.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# personalized + +
+ +* Version: 0.2.7 +* GitHub: https://github.com/jaredhuling/personalized +* Source code: https://github.com/cran/personalized +* Date/Publication: 2022-06-27 20:20:03 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "personalized")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > Sys.setenv("R_TESTS" = "") + > library(testthat) + > library(personalized) + Loading required package: glmnet + Loading required package: Matrix + Loaded glmnet 4.1-8 + Loading required package: mgcv + ... + 4. └─personalized:::plot.subgroup_validated(subgrp.val, type = "stability") + 5. ├─plotly::subplot(...) + 6. │ └─plotly:::dots2plots(...) + 7. ├─plotly::ggplotly(p.primary, tooltip = paste0("tooltip", 1:4)) + 8. └─plotly:::ggplotly.ggplot(...) + 9. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 215 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) fit.subgroup.Rd:56: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:57: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:58: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:59: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:60: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:61: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:62: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:63: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:64: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:65: Lost braces in \itemize; meant \describe ? + ... + checkRd: (-1) fit.subgroup.Rd:179-181: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:182: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:183: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fit.subgroup.Rd:184: Lost braces in \itemize; meant \describe ? + checkRd: (-1) validate.subgroup.Rd:77-81: Lost braces in \enumerate; meant \describe ? + checkRd: (-1) validate.subgroup.Rd:82-86: Lost braces in \enumerate; meant \describe ? + checkRd: (-1) validate.subgroup.Rd:89-92: Lost braces in \enumerate; meant \describe ? + checkRd: (-1) weighted.ksvm.Rd:21: Lost braces; missing escapes or markup? + 21 | \item{y}{The response vector (either a character vector, factor vector, or numeric vector with values in {-1, 1})} + | ^ + ``` + +# pGRN + +
+ +* Version: 0.3.5 +* GitHub: NA +* Source code: https://github.com/cran/pGRN +* Date/Publication: 2023-01-17 17:20:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "pGRN")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pGRN-Ex.R’ failed + The error most likely occurred in: + + > ### Name: module_networks + > ### Title: Get module level networks + > ### Aliases: module_networks + > + > ### ** Examples + > + > example_data <- pGRNDB + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─pGRN::plot_network(nets[["module1"]]) + 2. └─ggraph::geom_edge_fan(aes(alpha = after_stat(index)), show.legend = T) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +# PHENTHAUproc + +
+ +* Version: 1.1 +* GitHub: NA +* Source code: https://github.com/cran/PHENTHAUproc +* Date/Publication: 2024-06-12 14:00:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "PHENTHAUproc")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘PHENTHAUproc.Rmd’ using rmarkdown + ``` + +# photobiologyFilters + +
+ +* Version: 0.6.0 +* GitHub: https://github.com/aphalo/photobiologyfilters +* Source code: https://github.com/cran/photobiologyFilters +* Date/Publication: 2024-02-27 22:30:02 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "photobiologyFilters")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘r4p-introduction.Rmd’ using rmarkdown + --- finished re-building ‘r4p-introduction.Rmd’ + + --- re-building ‘user-guide.Rmd’ using rmarkdown + ``` + +# photobiologyInOut + +
+ +* Version: 0.4.30 +* GitHub: https://github.com/aphalo/photobiologyinout +* Source code: https://github.com/cran/photobiologyInOut +* Date/Publication: 2025-02-02 18:20:02 UTC +* Number of recursive dependencies: 160 + +Run `revdepcheck::cloud_details(, "photobiologyInOut")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘user-guide.Rmd’ using rmarkdown + ``` + +# photobiologyLamps + +
+ +* Version: 0.5.2 +* GitHub: https://github.com/aphalo/photobiologylamps +* Source code: https://github.com/cran/photobiologyLamps +* Date/Publication: 2023-10-24 10:50:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "photobiologyLamps")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘user-guide.Rmd’ using rmarkdown + ``` + +# photobiologyPlants + +
+ +* Version: 0.6.0 +* GitHub: https://github.com/aphalo/photobiologyplants +* Source code: https://github.com/cran/photobiologyPlants +* Date/Publication: 2025-01-12 17:00:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "photobiologyPlants")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘r4p-introduction.Rmd’ using rmarkdown + --- finished re-building ‘r4p-introduction.Rmd’ + + --- re-building ‘user-guide.Rmd’ using rmarkdown + ``` + +# photobiologySensors + +
+ +* Version: 0.5.1 +* GitHub: https://github.com/aphalo/photobiologysensors +* Source code: https://github.com/cran/photobiologySensors +* Date/Publication: 2023-10-24 09:00:02 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "photobiologySensors")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘r4p-introduction.Rmd’ using rmarkdown + --- finished re-building ‘r4p-introduction.Rmd’ + + --- re-building ‘userguide-1.Rmd’ using rmarkdown + ``` + +# phylepic + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/cidm-ph/phylepic +* Source code: https://github.com/cran/phylepic +* Date/Publication: 2024-05-31 19:10:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "phylepic")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘phylepic.Rmd’ using rmarkdown + ``` + +# phylopath + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/Ax3man/phylopath +* Source code: https://github.com/cran/phylopath +* Date/Publication: 2024-06-11 23:10:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "phylopath")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘phylopath-Ex.R’ failed + The error most likely occurred in: + + > ### Name: DAG + > ### Title: Directed acyclic graphs (DAGs) + > ### Aliases: DAG + > + > ### ** Examples + > + > # Use formula notation to create DAGs: + ... + Backtrace: + ▆ + 1. ├─base::plot(DAG(A ~ B, B ~ C)) + 2. └─phylopath:::plot.DAG(DAG(A ~ B, B ~ C)) + 3. └─ggraph::geom_edge_arc(...) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘binary_models.Rmd’ using rmarkdown + + Quitting from binary_models.Rmd:54-74 [define_models] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'binary_models.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + ... + + Error: processing vignette 'intro_to_phylopath.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘intro_to_phylopath.Rmd’ + + SUMMARY: processing the following files failed: + ‘binary_models.Rmd’ ‘intro_to_phylopath.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# phylosem + +
+ +* Version: 1.1.4 +* GitHub: https://github.com/James-Thorson-NOAA/phylosem +* Source code: https://github.com/cran/phylosem +* Date/Publication: 2024-04-02 21:15:03 UTC +* Number of recursive dependencies: 219 + +Run `revdepcheck::cloud_details(, "phylosem")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘phylosem-Ex.R’ failed + The error most likely occurred in: + + > ### Name: phylosem + > ### Title: Fit phylogenetic structural equation model + > ### Aliases: phylosem + > + > ### ** Examples + > + > # Load data set + ... + Backtrace: + ▆ + 1. ├─base::plot(my_fitted_DAG) + 2. └─phylopath:::plot.fitted_DAG(my_fitted_DAG) + 3. └─ggraph::geom_edge_arc(...) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘comparison.Rmd’ using rmarkdown + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘DiagrammeR’ + ``` + +* checking installed package size ... NOTE + ``` + installed size is 71.6Mb + sub-directories of 1Mb or more: + libs 70.8Mb + ``` + +# phyloseqGraphTest + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/jfukuyama/phyloseqGraphTest +* Source code: https://github.com/cran/phyloseqGraphTest +* Date/Publication: 2024-02-05 19:00:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "phyloseqGraphTest")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘phyloseqGraphTest-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_permutations + > ### Title: Plots the permutation distribution + > ### Aliases: plot_permutations + > + > ### ** Examples + > + > library(phyloseq) + > data(enterotype) + > gt = graph_perm_test(enterotype, sampletype = "SeqTech") + > plot_permutations(gt) + Warning: `qplot()` was deprecated in ggplot2 3.4.0. + ℹ The deprecated feature was likely used in the phyloseqGraphTest package. + Please report the issue to the authors. + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@layout`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘gt_vignette.Rmd’ using rmarkdown + ``` + +# PieGlyph + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/rishvish/PieGlyph +* Source code: https://github.com/cran/PieGlyph +* Date/Publication: 2024-06-28 12:00:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "PieGlyph")` for more info + +
+ +## Newly broken + +* checking whether package ‘PieGlyph’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘PieGlyph’ ... +** package ‘PieGlyph’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'is.waive' not found +Error: unable to load R code in package ‘PieGlyph’ +Execution halted +ERROR: lazy loading failed for package ‘PieGlyph’ +* removing ‘/tmp/workdir/PieGlyph/new/PieGlyph.Rcheck/PieGlyph’ + + +``` +### CRAN + +``` +* installing *source* package ‘PieGlyph’ ... +** package ‘PieGlyph’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (PieGlyph) + + +``` +# plantTracker + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/aestears/plantTracker +* Source code: https://github.com/cran/plantTracker +* Date/Publication: 2023-05-05 18:20:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "plantTracker")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Suggested_plantTracker_Workflow.Rmd’ using rmarkdown + Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : + number of items to replace is not a multiple of replacement length + Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], : + number of items to replace is not a multiple of replacement length + Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : + number of items to replace is not a multiple of replacement length + Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], : + number of items to replace is not a multiple of replacement length + Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : + number of items to replace is not a multiple of replacement length + Warning in options[opts_attr] <- Map(code_folding_attr, options[opts_attr], : + number of items to replace is not a multiple of replacement length + ``` + +# Plasmidprofiler + +
+ +* Version: 0.1.6 +* GitHub: NA +* Source code: https://github.com/cran/Plasmidprofiler +* Date/Publication: 2017-01-06 01:10:47 +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "Plasmidprofiler")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Plasmidprofiler-Ex.R’ failed + The error most likely occurred in: + + > ### Name: main + > ### Title: Main: Run everything + > ### Aliases: main + > + > ### ** Examples + > + > main(blastdata, + ... + Saving 12 x 7 in image + Warning: Vectorized input to `element_text()` is not officially supported. + ℹ Results may be unexpected or may change in future versions of ggplot2. + Warning in geom_tile(aes(x = Plasmid, y = Sample, label = AMR_gene, fill = Inc_group, : + Ignoring unknown aesthetics: label and text + Warning: Use of `report$Sureness` is discouraged. + ℹ Use `Sureness` instead. + Error in pm[[2]] : subscript out of bounds + Calls: main ... -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# Platypus + +
+ +* Version: 3.6.0 +* GitHub: NA +* Source code: https://github.com/cran/Platypus +* Date/Publication: 2024-10-18 11:10:17 UTC +* Number of recursive dependencies: 289 + +Run `revdepcheck::cloud_details(, "Platypus")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Platypus-Ex.R’ failed + The error most likely occurred in: + + > ### Name: GEX_gene_visualization + > ### Title: Visualization of marker expression in a data set or of + > ### predefined genes (B cells, CD4 T cells and CD8 T cells). + > ### Aliases: GEX_gene_visualization + > + > ### ** Examples + > + ... + Warning: The following requested variables were not found (10 out of 35 shown): SLPI, XBP1, SLAMF7, SDC1, PRDM1, H2-AA, H2-EB1, H2-EB2, H2-OA, H2-OB + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the Seurat package. + Please report the issue at . + Error in `&.default`(plot, scale_color_gradientn(colors = cols, limits = c(min.feature.value, : + operations are possible only for numeric, logical or complex types + Calls: GEX_gene_visualization ... suppressMessages -> withCallingHandlers -> Ops.S7_object -> NextMethod + Execution halted + ``` + +# PlayerChart + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/PlayerChart +* Date/Publication: 2024-05-27 14:00:02 UTC +* Number of recursive dependencies: 45 + +Run `revdepcheck::cloud_details(, "PlayerChart")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PlayerChart-Ex.R’ failed + The error most likely occurred in: + + > ### Name: player_pizza_chart + > ### Title: Create a pizza chart for sports player. + > ### Aliases: player_pizza_chart + > + > ### ** Examples + > + > + ... + 18. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 19. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 20. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 21. │ └─base::withCallingHandlers(...) + 22. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 23. ├─S7::S7_dispatch() + 24. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 25. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 26. └─rlang::abort(...) + Execution halted + ``` + +# PLEXI + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/PLEXI +* Date/Publication: 2023-08-09 15:50:03 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "PLEXI")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PLEXI-Ex.R’ failed + The error most likely occurred in: + + > ### Name: subgraph_difference_plot + > ### Title: Visualization of a difference subgroup using a circular graph + > ### Aliases: subgraph_difference_plot + > + > ### ** Examples + > + > myNet = network_gen(n.nodes = 100, n.var.nodes = 5, n.var.nei = 90, noise.sd = .01) + ... + Backtrace: + ▆ + 1. └─PLEXI::subgraph_difference_plot(graph_data, node.importance = node_importance_dummy) + 2. └─PLEXI::subgraph_plot(...) + 3. └─ggraph::geom_edge_arc(ggplot2::aes(color = EdgeColor, edge_width = abs(W)), edge_alpha = 0.7) + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +# PLMIX + +
+ +* Version: 2.1.1 +* GitHub: NA +* Source code: https://github.com/cran/PLMIX +* Date/Publication: 2019-09-04 11:50:02 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "PLMIX")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PLMIX-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.mpPLMIX + > ### Title: Plot the MAP estimates for a Bayesian mixture of Plackett-Luce + > ### models + > ### Aliases: plot.mpPLMIX + > + > ### ** Examples + > + ... + > data(d_carconf) + > MAP <- mapPLMIX(pi_inv=d_carconf, K=ncol(d_carconf), G=3) + > plot(MAP) + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the PLMIX package. + Please report the issue to the authors. + Error: C stack usage 9963764 is too close to the limit + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.1Mb + sub-directories of 1Mb or more: + libs 8.6Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘PlackettLuce’ ‘StatRank’ ‘pmr’ ‘prefmod’ ‘rankdist’ + All declared Imports should be used. + ``` + +# plotcli + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/cheuerde/plotcli +* Source code: https://github.com/cran/plotcli +* Date/Publication: 2024-04-24 14:10:07 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "plotcli")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggplotli.Rmd’ using rmarkdown + + Quitting from ggplotli.Rmd:21-35 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `p_build@data`? + --- + Backtrace: + ... + --- finished re-building ‘plotcli_class.Rmd’ + + --- re-building ‘plotcli_wrappers.Rmd’ using rmarkdown + --- finished re-building ‘plotcli_wrappers.Rmd’ + + SUMMARY: processing the following file failed: + ‘ggplotli.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# plotdap + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/rmendels/plotdap +* Source code: https://github.com/cran/plotdap +* Date/Publication: 2023-10-17 22:00:15 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "plotdap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘plotdap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add_ggplot + > ### Title: Add ggplot2 elements to a plotdap object + > ### Aliases: add_ggplot + > + > ### ** Examples + > + > + ... + + crs = "+proj=laea +y_0=0 +lon_0=155 +lat_0=-90 +ellps=WGS84 +no_defs") + Loading required package: maps + > p <- add_ggplot( + + p, + + ggplot2::theme_bw() + + ) + Error in .Primitive("@")(NULL, properties) : + no applicable method for `@` applied to an object of class "NULL" + Calls: add_ggplot ... -> validate -> validate_properties -> @ -> do.call + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘using_plotdap.Rmd’ using rmarkdown + + Quitting from using_plotdap.Rmd:57-61 [world] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! no applicable method for `@` applied to an object of class "NULL" + --- + Backtrace: + ... + + Error: processing vignette 'using_plotdap.Rmd' failed with diagnostics: + no applicable method for `@` applied to an object of class "NULL" + --- failed re-building ‘using_plotdap.Rmd’ + + SUMMARY: processing the following file failed: + ‘using_plotdap.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# plotDK + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/plotDK +* Date/Publication: 2021-10-01 08:00:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "plotDK")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(plotDK) + > + > test_check("plotDK") + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 44 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test-plotDK.R:72:5'): The returned plot has the correct labels ──── + labels$fill not equal to "test_label". + target is NULL, current is character + ── Failure ('test-plotDK.R:81:5'): The returned plot has the correct labels ──── + labels$fill not equal to "fill". + target is NULL, current is character + + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 44 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘mapproj’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 12992 marked UTF-8 strings + ``` + +# PlotFTIR + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/NRCan/PlotFTIR +* Source code: https://github.com/cran/PlotFTIR +* Date/Publication: 2025-03-31 15:30:06 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "PlotFTIR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PlotFTIR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add_band + > ### Title: Add Band + > ### Aliases: add_band + > + > ### ** Examples + > + > if (requireNamespace("ggplot2", quietly = TRUE)) { + ... + + # Generate a plot + + p <- plot_ftir(sample_spectra) + + + + # Add a band to -OH region: + + add_band(p, c(3600, 3100), "-OH Stretch") + + } + Error in `-.default`(ftir_spectra_plot, ggplot2::annotate("rect", fill = colour, : + non-numeric argument to binary operator + Calls: add_band -> Ops.S7_object -> NextMethod + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 1. ├─PlotFTIR::plot_ftir_stacked(biodiesel) at test-plot_ftir.R:14:3 + 2. │ ├─base::`$<-`(`*tmp*`, "labels", value = ``) + 3. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "labels", value = ``) + 4. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 5. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 6. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 9 | WARN 43 | SKIP 0 | PASS 486 ] + Error: Test failures + Execution halted + ``` + +# plothelper + +
+ +* Version: 0.1.9 +* GitHub: https://github.com/githubwwwjjj/plothelper +* Source code: https://github.com/cran/plothelper +* Date/Publication: 2020-05-08 08:40:10 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "plothelper")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘plothelper-Ex.R’ failed + The error most likely occurred in: + + > ### Name: get_gg_label + > ### Title: Checking Min, Max, Labels and Label Positions + > ### Aliases: get_gg_label + > + > ### ** Examples + > + > get_gg_label(a=1, b=1000) + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(OBJ)@layout`? + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# plotly + +
+ +* Version: 4.10.4 +* GitHub: https://github.com/plotly/plotly.R +* Source code: https://github.com/cran/plotly +* Date/Publication: 2024-01-13 22:40:02 UTC +* Number of recursive dependencies: 135 + +Run `revdepcheck::cloud_details(, "plotly")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘plotly-Ex.R’ failed + The error most likely occurred in: + + > ### Name: style + > ### Title: Modify trace(s) + > ### Aliases: style + > + > ### ** Examples + > + > ## Don't show: + ... + + # this clobbers the previously supplied marker.line.color + + style(p, marker.line = list(width = 2.5), marker.size = 10) + + ## Don't show: + + }) # examplesIf + > (p <- ggplotly(qplot(data = mtcars, wt, mpg, geom = c("point", "smooth")))) + Warning: `qplot()` was deprecated in ggplot2 3.4.0. + `geom_smooth()` using method = 'loess' and formula = 'y ~ x' + Error in pm[[2]] : subscript out of bounds + Calls: ... eval -> eval -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library("testthat") + > library("plotly") + Loading required package: ggplot2 + + Attaching package: 'plotly' + + The following object is masked from 'package:ggplot2': + ... + • plotly-subplot/subplot-bump-axis-annotation.svg + • plotly-subplot/subplot-bump-axis-image.svg + • plotly-subplot/subplot-bump-axis-shape-shared.svg + • plotly-subplot/subplot-bump-axis-shape.svg + • plotly-subplot/subplot-reposition-annotation.svg + • plotly-subplot/subplot-reposition-image.svg + • plotly-subplot/subplot-reposition-shape-fixed.svg + • plotly-subplot/subplot-reposition-shape.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.1Mb + sub-directories of 1Mb or more: + R 1.0Mb + htmlwidgets 4.0Mb + ``` + +# plotor + +
+ +* Version: 0.5.2 +* GitHub: https://github.com/craig-parylo/plotor +* Source code: https://github.com/cran/plotor +* Date/Publication: 2025-02-09 11:50:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "plotor")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + > test_check("plotor") + [ FAIL 1 | WARN 20 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plot_or.R:3:3'): plotor output does not produce messages or warnings ── + `{ ... }` produced warnings. + + [ FAIL 1 | WARN 20 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# plotROC + +
+ +* Version: 2.3.1 +* GitHub: https://github.com/sachsmc/plotROC +* Source code: https://github.com/cran/plotROC +* Date/Publication: 2023-10-06 12:40:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "plotROC")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘plotROC-Ex.R’ failed + The error most likely occurred in: + + > ### Name: calc_auc + > ### Title: Calculate the Area under the ROC curve + > ### Aliases: calc_auc + > + > ### ** Examples + > + > D.ex <- rbinom(50, 1, .5) + > rocdata <- data.frame(D = c(D.ex, D.ex), + + M = c(rnorm(50, mean = D.ex, sd = .4), rnorm(50, mean = D.ex, sd = 1)), + + Z = c(rep("A", 50), rep("B", 50))) + > + > ggroc <- ggplot(rocdata, aes(m = M, d = D)) + geom_roc() + > calc_auc(ggroc) + Error: Can't get S7 properties with `$`. Did you mean `l2@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(plotROC) + Loading required package: ggplot2 + > + > test_check("plotROC") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + + ... + ── Error ('test-calc.R:16:1'): (code run outside of `test_that()`) ───────────── + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(ggplot(testdata, aes(m = T1, d = D)) + geom_roc())@data`? + Backtrace: + ▆ + 1. ├─...$data at test-calc.R:16:1 + 2. └─S7:::`$.S7_object`(...) at test-calc.R:16:1 + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘examples.Rmd’ using rmarkdown + ``` + +# plotscaper + +
+ +* Version: 0.2.8 +* GitHub: https://github.com/bartonicek/plotscaper +* Source code: https://github.com/cran/plotscaper +* Date/Publication: 2025-02-23 08:30:02 UTC +* Number of recursive dependencies: 58 + +Run `revdepcheck::cloud_details(, "plotscaper")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘algebra.Rmd’ using rmarkdown + ``` + +# plotthis + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/pwwang/plotthis +* Source code: https://github.com/cran/plotthis +* Date/Publication: 2025-04-07 09:00:02 UTC +* Number of recursive dependencies: 212 + +Run `revdepcheck::cloud_details(, "plotthis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘plotthis-Ex.R’ failed + The error most likely occurred in: + + > ### Name: AreaPlot + > ### Title: Area plot + > ### Aliases: AreaPlot + > + > ### ** Examples + > + > data <- data.frame( + ... + 11. └─base_ops[[.Generic]](e1, e2) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. └─ggplot2::ggplot_add(object, p, objectname) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. └─rlang::abort(...) + Execution halted + ``` + +# pmartR + +
+ +* Version: 2.5.0 +* GitHub: https://github.com/pmartR/pmartR +* Source code: https://github.com/cran/pmartR +* Date/Publication: 2025-04-23 18:00:02 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "pmartR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pmartR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.dataRes + > ### Title: Plot dataRes object + > ### Aliases: plot.dataRes + > + > ### ** Examples + > + > ## Don't show: + ... + 15. └─base_ops[[.Generic]](e1, e2) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 18. └─ggplot2:::add_ggplot(e1, e2, e2name) + 19. └─ggplot2::ggplot_add(object, p, objectname) + 20. ├─S7::S7_dispatch() + 21. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 22. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 23. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pmartR) + > + > test_check("pmartR") + [ FAIL 1 | WARN 11 | SKIP 11 | PASS 2380 ] + + ══ Skipped tests (11) ══════════════════════════════════════════════════════════ + ... + • plots/plot-spansres-n-biomolecule-bar.svg + • plots/plot-spansres.svg + • plots/plot-statres-anova-volcano.svg + • plots/plot-statres-anova.svg + • plots/plot-statres-combined-volcano.svg + • plots/plot-statres-combined.svg + • plots/plot-statres-gtest.svg + • plots/plot-totalcountfilt.svg + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.7Mb + sub-directories of 1Mb or more: + R 1.5Mb + help 1.5Mb + libs 6.6Mb + ``` + +# pmxTools + +
+ +* Version: 1.3 +* GitHub: https://github.com/kestrel99/pmxTools +* Source code: https://github.com/cran/pmxTools +* Date/Publication: 2023-02-21 16:00:08 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "pmxTools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pmxTools) + Loading required package: patchwork + > + > test_check("pmxTools") + [ FAIL 1 | WARN 1 | SKIP 12 | PASS 110 ] + + ... + 42. └─handlers[[1L]](cnd) + 43. └─cli::cli_abort(...) + 44. └─rlang::abort(...) + + [ FAIL 1 | WARN 1 | SKIP 12 | PASS 110 ] + Deleting unused snapshots: + • plot/conditioned-distplot.svg + • plot/perc.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘pk-curves.Rmd’ using rmarkdown + + Quitting from pk-curves.Rmd:62-102 [1cptdemo] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'pk-curves.Rmd' failed with diagnostics: + Can't add `p1.2` to a object. + --- failed re-building ‘pk-curves.Rmd’ + + SUMMARY: processing the following file failed: + ‘pk-curves.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) plot_scm.Rd:106: Lost braces; missing escapes or markup? + 106 | \item{lookupDF}{A data frame containing a lookup table for node labels. By default, {plot_scm} will use the PSN model names. If a lookup table containing the fields `Model` and `Alias` is provided, model names in `Model` will be replaced in the output plots by mtaching labels in `Alias`.} + | ^ + checkRd: (-1) rnm.Rd:56: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:57: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:58: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:59: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:60: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:61: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:62: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:63: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:64: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:65: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:66: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:67: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:68: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:69: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:70: Lost braces in \itemize; meant \describe ? + checkRd: (-1) rnm.Rd:71: Lost braces in \itemize; meant \describe ? + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘DiagrammeR’ + ``` + +# pollster + +
+ +* Version: 0.1.6 +* GitHub: NA +* Source code: https://github.com/cran/pollster +* Date/Publication: 2023-05-12 19:00:05 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "pollster")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘crosstab3way.Rmd’ using rmarkdown + + Quitting from crosstab3way.Rmd:40-54 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! object is invalid: + - every label must be named. + --- + ... + 3. └─S7::new_object(labels) + 4. └─S7::validate(object, recursive = !parent_validated) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'crosstab3way.Rmd' failed with diagnostics: + object is invalid: + - every label must be named. + --- failed re-building ‘crosstab3way.Rmd’ + + --- re-building ‘crosstabs.Rmd’ using rmarkdown + ``` + +# poppr + +
+ +* Version: 2.9.6 +* GitHub: https://github.com/grunwaldlab/poppr +* Source code: https://github.com/cran/poppr +* Date/Publication: 2024-03-15 17:40:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "poppr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘poppr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: genotype_curve + > ### Title: Produce a genotype accumulation curve + > ### Aliases: genotype_curve + > + > ### ** Examples + > + > data(nancycats) + > nan_geno <- genotype_curve(nancycats) + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘algo.Rnw’ using knitr + Error: processing vignette 'algo.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'algo.tex' failed. + LaTeX errors: + ! LaTeX Error: File `colortbl.sty' not found. + + Type X to quit or to proceed, + or enter new name. (Default extension: sty) + ... + l.4 \makeatletter + ^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘algo.Rnw’ + + SUMMARY: processing the following file failed: + ‘algo.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# portvine + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/EmanuelSommer/portvine +* Source code: https://github.com/cran/portvine +* Date/Publication: 2024-01-18 16:30:02 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "portvine")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘get_started.Rmd’ using rmarkdown + + Quitting from get_started.Rmd:29-45 [setup] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'get_started.Rmd' failed with diagnostics: + ... + Can't merge the `plot.title` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + --- failed re-building ‘get_started.Rmd’ + + SUMMARY: processing the following file failed: + ‘get_started.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 49.3Mb + sub-directories of 1Mb or more: + libs 48.2Mb + ``` + +# PoweREST + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/PoweREST +* Date/Publication: 2024-09-09 09:30:02 UTC +* Number of recursive dependencies: 181 + +Run `revdepcheck::cloud_details(, "PoweREST")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PoweREST-Ex.R’ failed + The error most likely occurred in: + + > ### Name: vis_XGBoost + > ### Title: Visualization of the power estimations from XGBoost + > ### Aliases: vis_XGBoost + > + > ### ** Examples + > + > data(power_example) + ... + [95] train-rmse:2.424657 + [96] train-rmse:2.424631 + [97] train-rmse:2.424603 + [98] train-rmse:2.424565 + [99] train-rmse:2.424548 + [100] train-rmse:2.424535 + > pred<-pred_XGBoost(bst,n.grid=30,xlim=c(0,1.5),ylim=c(0,0.1),replicates=3) + > vis_XGBoost(pred,view='2D',legend_name='Power',xlab='avg_log2FC_abs',ylab='mean_pct') + Error: Can't find property @i + Execution halted + ``` + +# PPforest + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/natydasilva/PPforest +* Source code: https://github.com/cran/PPforest +* Date/Publication: 2022-09-09 23:32:55 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "PPforest")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘PPforest-vignette.Rmd’ using rmarkdown + + Quitting from PPforest-vignette.Rmd:117-129 [descri] + Error: processing vignette 'PPforest-vignette.Rmd' failed with diagnostics: + C stack usage 9961588 is too close to the limit + --- failed re-building ‘PPforest-vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘PPforest-vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.0Mb + sub-directories of 1Mb or more: + libs 4.8Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) NCI60.Rd:19: Lost braces in \itemize; meant \describe ? + checkRd: (-1) NCI60.Rd:20: Lost braces in \itemize; meant \describe ? + checkRd: (-1) crab.Rd:21: Lost braces in \itemize; meant \describe ? + checkRd: (-1) crab.Rd:22: Lost braces in \itemize; meant \describe ? + checkRd: (-1) crab.Rd:23: Lost braces in \itemize; meant \describe ? + checkRd: (-1) crab.Rd:24: Lost braces in \itemize; meant \describe ? + checkRd: (-1) crab.Rd:25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) crab.Rd:26: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fishcatch.Rd:20: Lost braces in \itemize; meant \describe ? + checkRd: (-1) fishcatch.Rd:21: Lost braces in \itemize; meant \describe ? + ... + checkRd: (-1) parkinson.Rd:37: Lost braces in \itemize; meant \describe ? + checkRd: (-1) parkinson.Rd:38: Lost braces in \itemize; meant \describe ? + checkRd: (-1) parkinson.Rd:39: Lost braces in \itemize; meant \describe ? + checkRd: (-1) parkinson.Rd:40: Lost braces in \itemize; meant \describe ? + checkRd: (-1) parkinson.Rd:41: Lost braces in \itemize; meant \describe ? + checkRd: (-1) parkinson.Rd:11: Lost braces + 11 | url{https://archive.ics.uci.edu/ml/datasets/Parkinsons} + | ^ + checkRd: (-1) wine.Rd:18: Lost braces in \itemize; meant \describe ? + checkRd: (-1) wine.Rd:19: Lost braces in \itemize; meant \describe ? + ``` + +# PPQplan + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/allenzhuaz/PPQplan +* Source code: https://github.com/cran/PPQplan +* Date/Publication: 2020-10-08 04:30:06 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "PPQplan")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘PPQnote.Rmd’ using rmarkdown + --- finished re-building ‘PPQnote.Rmd’ + + --- re-building ‘PPQplan-vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 12.1Mb + sub-directories of 1Mb or more: + doc 12.0Mb + ``` + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# pprof + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/UM-KevinHe/pprof +* Source code: https://github.com/cran/pprof +* Date/Publication: 2024-12-12 15:10:02 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "pprof")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pprof-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.linear_fe + > ### Title: Get funnel plot from a fitted 'linear_fe' object for + > ### institutional comparisons + > ### Aliases: plot.linear_fe + > + > ### ** Examples + > + ... + 14. └─ggplot2 (local) train(..., self = self) + 15. └─self$extract_params(scale, params, ...) + 16. └─ggplot2 (local) extract_params(...) + 17. └─scale$make_title(params$title, scale$name, title) + 18. └─ggplot2 (local) make_title(..., self = self) + 19. └─ggplot2:::allow_lambda(scale_title) + 20. └─rlang::as_function(x) + 21. └─rlang:::abort_coercion(...) + 22. └─rlang::abort(msg, call = call) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.8Mb + sub-directories of 1Mb or more: + data 2.0Mb + libs 5.4Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# ppseq + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/zabore/ppseq +* Source code: https://github.com/cran/ppseq +* Date/Publication: 2024-09-04 22:20:02 UTC +* Number of recursive dependencies: 102 + +Run `revdepcheck::cloud_details(, "ppseq")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ppseq-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.calibrate_thresholds + > ### Title: Plot method for 'calibrate_thresholds' objects + > ### Aliases: plot.calibrate_thresholds + > + > ### ** Examples + > + > + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘one_sample_expansion.Rmd’ using rmarkdown + + Quitting from one_sample_expansion.Rmd:182-188 [unnamed-chunk-13] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ! subscript out of bounds + --- + Backtrace: + ... + + Error: processing vignette 'two_sample_randomized.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘two_sample_randomized.Rmd’ + + SUMMARY: processing the following files failed: + ‘one_sample_expansion.Rmd’ ‘two_sample_randomized.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 11.0Mb + sub-directories of 1Mb or more: + doc 10.5Mb + ``` + +# prcbench + +
+ +* Version: 1.1.10 +* GitHub: https://github.com/evalclass/prcbench +* Source code: https://github.com/cran/prcbench +* Date/Publication: 2025-05-14 17:40:01 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "prcbench")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘prcbench-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot + > ### Title: Plot the result of Precision-Recall curve evaluation + > ### Aliases: autoplot autoplot.evalcurve + > + > ### ** Examples + > + > library(ggplot2) + ... + 12. └─base_ops[[.Generic]](e1, e2) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 15. └─ggplot2:::add_ggplot(e1, e2, e2name) + 16. └─ggplot2::ggplot_add(object, p, objectname) + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > #' @importFrom prcbench + > + > library(testthat) + > + > # test_check("prcbench", reporter=ProgressReporter) + > test_check("prcbench") + Loading required package: prcbench + ... + 20. └─ggplot2:::add_ggplot(e1, e2, e2name) + 21. └─ggplot2::ggplot_add(object, p, objectname) + 22. ├─S7::S7_dispatch() + 23. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 24. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 25. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 751 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘introduction.Rmd’ using rmarkdown + + Quitting from introduction.Rmd:180-194 [unnamed-chunk-7] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'introduction.Rmd' failed with diagnostics: + Can't add `x[[i]]` to a object. + --- failed re-building ‘introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# PRECAST + +
+ +* Version: 1.6.6 +* GitHub: https://github.com/feiyoung/PRECAST +* Source code: https://github.com/cran/PRECAST +* Date/Publication: 2025-03-27 15:20:02 UTC +* Number of recursive dependencies: 218 + +Run `revdepcheck::cloud_details(, "PRECAST")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PRECAST-Ex.R’ failed + The error most likely occurred in: + + > ### Name: SpaPlot + > ### Title: Spatial heatmap + > ### Aliases: SpaPlot + > + > ### ** Examples + > + > + ... + 2025-05-19 09:01:10.095226 : ***** New Seurat object is generated!, 0.003 mins elapsed. + > SpaPlot(seuInt) + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the PRECAST package. + Please report the issue at . + Error: object properties are invalid: + - @colour must be , , or , not + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 14.2Mb + sub-directories of 1Mb or more: + data 2.2Mb + libs 11.3Mb + ``` + +# precintcon + +
+ +* Version: 2.3.0 +* GitHub: https://github.com/lucasvenez/precintcon +* Source code: https://github.com/cran/precintcon +* Date/Publication: 2016-07-17 13:49:19 +* Number of recursive dependencies: 26 + +Run `revdepcheck::cloud_details(, "precintcon")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘precintcon-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pplot.deciles + > ### Title: Plot deciles + > ### Aliases: pplot.deciles precintcon.plot.deciles + > ### Keywords: deciles precipitation + > + > ### ** Examples + > + ... + 1. └─precintcon::pplot.deciles(monthly) + 2. └─precintcon::precintcon.plot.deciles(...) + 3. └─base::mapply(...) + 4. └─precintcon (local) ``(...) + 5. └─ggplot2::geom_boxplot(...) + 6. └─ggplot2::layer(...) + 7. └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)") + 8. └─lifecycle:::deprecate_stop0(msg) + 9. └─rlang::cnd_signal(...) + Execution halted + ``` + +# precrec + +
+ +* Version: 0.14.5 +* GitHub: https://github.com/evalclass/precrec +* Source code: https://github.com/cran/precrec +* Date/Publication: 2025-05-15 13:40:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "precrec")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.5Mb + sub-directories of 1Mb or more: + libs 4.2Mb + ``` + +# predictMe + +
+ +* Version: 0.1 +* GitHub: https://github.com/mmiche/predictMe +* Source code: https://github.com/cran/predictMe +* Date/Publication: 2022-05-24 09:40:02 UTC +* Number of recursive dependencies: 54 + +Run `revdepcheck::cloud_details(, "predictMe")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘predictMe-Ex.R’ failed + The error most likely occurred in: + + > ### Name: makeTablePlot + > ### Title: Tabularize the essential result of the predictMe package. + > ### Aliases: makeTablePlot + > + > ### ** Examples + > + > # Simulate data set with continuous outcome (use all default values) + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─predictMe::makeTablePlot(...) + 2. └─ggplot2::scale_fill_continuous(high = "#132B43", low = "#56B1F7") + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘predictMe.Rmd’ using rmarkdown + + Quitting from predictMe.Rmd:94-99 [unnamed-chunk-4] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'predictMe.Rmd' failed with diagnostics: + Unknown scale type: + --- failed re-building ‘predictMe.Rmd’ + + SUMMARY: processing the following file failed: + ‘predictMe.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# predictNMB + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/ropensci/predictNMB +* Source code: https://github.com/cran/predictNMB +* Date/Publication: 2023-06-03 07:40:02 UTC +* Number of recursive dependencies: 102 + +Run `revdepcheck::cloud_details(, "predictNMB")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > #' @srrstats {G5.2, G5.2a, G5.2b, G5.3, G5.4, G5.4a, G5.5, G5.6, G5.6a, G5.6b, + > #' G5.8, G5.8a, G5.8b, G5.8c, G5.8d, G5.9, G5.9b, G5.11} + > #' Covered by package tests. + > #' @srrstats {EA6.0, EA6.0a, EA6.0b, EA6.0c, EA6.0d} + > #' All return values are tested. Classes and expectations for graphics are + > #' tested in in test-plot.R. + ... + • ce_plot/ce-plot-predictnmbsim-obj-filled-points.svg + • ce_plot/ce-plot-predictnmbsim-obj-method-shapes.svg + • ce_plot/ce-plot-predictnmbsim-obj-methods-reorder.svg + • ce_plot/ce-plot-predictnmbsim-obj-no-wtp-line.svg + • ce_plot/ce-plot-predictnmbsim-obj-none.svg + • ce_plot/ce-plot-predictnmbsim-obj-solid-wtp-linetype.svg + • ce_plot/ce-plot-predictnmbsim-obj-triangles.svg + • ce_plot/ce-plot-predictnmbsim-obj-twodash-wtp-linetype.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘creating-nmb-functions.Rmd’ using rmarkdown + ``` + +# predint + +
+ +* Version: 2.2.1 +* GitHub: https://github.com/MaxMenssen/predint +* Source code: https://github.com/cran/predint +* Date/Publication: 2024-03-04 15:10:03 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "predint")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(predint) + Loading required package: ggplot2 + Loading required package: lme4 + Loading required package: Matrix + Loading required package: MASS + + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plot.R:16:9'): plot must be a ggplot ───────────────────────── + is.list(qp_plot) is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 304 ] + Error: Test failures + Execution halted + ``` + +# PredPsych + +
+ +* Version: 0.4 +* GitHub: NA +* Source code: https://github.com/cran/PredPsych +* Date/Publication: 2019-07-23 08:20:05 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "PredPsych")` for more info + +
+ +## Newly broken + +* checking whether package ‘PredPsych’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘PredPsych’ + See ‘/tmp/workdir/PredPsych/new/PredPsych.Rcheck/00install.out’ for details. + ``` + +# predRupdate + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/GlenMartin31/predRupdate +* Source code: https://github.com/cran/predRupdate +* Date/Publication: 2024-08-23 14:20:02 UTC +* Number of recursive dependencies: 113 + +Run `revdepcheck::cloud_details(, "predRupdate")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(predRupdate) + > + > test_check("predRupdate") + $OE_ratio + [1] 1.900612 + + ... + `expected`: "gg" "ggplot" + ── Failure ('test-flex_calplot.R:28:3'): flex_calplot works ──────────────────── + class(...) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 2 | WARN 0 | SKIP 4 | PASS 229 ] + Error: Test failures + Execution halted + ``` + +# preference + +
+ +* Version: 1.1.6 +* GitHub: https://github.com/kaneplusplus/preference +* Source code: https://github.com/cran/preference +* Date/Publication: 2020-09-09 06:20:03 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "preference")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > library('testthat') + > library('preference') + + Attaching package: 'preference' + + The following object is masked from 'package:stats': + + ... + ── Failure ('test-plot.R:8:3'): Plot trials with fixed power and varying preference effect. ── + `p` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-plot.R:17:3'): Plot trials with fixed power and varying selection effect. ── + `p` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-plot.R:27:3'): Plot trials with fixed power varying preference and selection. ── + `p` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 3 | WARN 1 | SKIP 3 | PASS 56 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) preference-package.Rd:48-49: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference-package.Rd:50-51: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference-package.Rd:52-53: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference-package.Rd:58-60: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference-package.Rd:61-63: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference-package.Rd:68-69: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference-package.Rd:70-71: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference-package.Rd:72-73: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference-package.Rd:78-79: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference-package.Rd:80-81: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference.Rd:21: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference.Rd:22-23: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference.Rd:24-25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) preference.Rd:26-27: Lost braces in \itemize; meant \describe ? + ``` + +# prevR + +
+ +* Version: 5.0.0 +* GitHub: https://github.com/larmarange/prevR +* Source code: https://github.com/cran/prevR +* Date/Publication: 2023-05-15 18:50:03 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "prevR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘intro_prevR.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.4Mb + sub-directories of 1Mb or more: + data 7.5Mb + ``` + +# priorsense + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/n-kall/priorsense +* Source code: https://github.com/cran/priorsense +* Date/Publication: 2025-04-10 14:00:02 UTC +* Number of recursive dependencies: 120 + +Run `revdepcheck::cloud_details(, "priorsense")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(priorsense) + > + > test_check("priorsense") + [ FAIL 1 | WARN 0 | SKIP 2 | PASS 91 ] + + ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ + • On CRAN (2): 'test_cmdstan.R:5:3', 'test_moment_matching.R:15:3' + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_plots.R:103:5'): pagination of plots works as expected ─────── + powerscale_plot_quantities(ps, variables_per_page = Inf) has length 1, not length 11. + + [ FAIL 1 | WARN 0 | SKIP 2 | PASS 91 ] + Error: Test failures + Execution halted + ``` + +# prism + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/ropensci/prism +* Source code: https://github.com/cran/prism +* Date/Publication: 2025-03-25 15:50:05 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "prism")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > suppressPackageStartupMessages(library(prism)) + > + > test_check("prism") + + + *************************************** + ... + ── Failure ('test-pd_plot_slice.R:11:3'): pd_plot_slice() works ──────────────── + ggplot2::ggplot_build(gg) inherits from 'ggplot2::ggplot_built'/'S7_object' not 'ggplot_built'. + ── Failure ('test-pd_plot_slice.R:13:3'): pd_plot_slice() works ──────────────── + gg <- ... inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-pd_plot_slice.R:20:3'): pd_plot_slice() works ──────────────── + ggplot2::ggplot_build(gg) inherits from 'ggplot2::ggplot_built'/'S7_object' not 'ggplot_built'. + + [ FAIL 8 | WARN 0 | SKIP 8 | PASS 182 ] + Error: Test failures + Execution halted + ``` + +# ProActive + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/jlmaier12/ProActive +* Source code: https://github.com/cran/ProActive +* Date/Publication: 2025-01-21 08:00:02 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "ProActive")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ProActive-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geneAnnotationSearch + > ### Title: Search for gene annotations on classified contigs/chunks + > ### Aliases: geneAnnotationSearch + > + > ### ** Examples + > + > geneAnnotMatches <- geneAnnotationSearch(sampleMetagenomeResults, sampleMetagenomePileup, + + sampleMetagenomegffTSV, geneOrProduct="product", + + keyWords=c("toxin", "drug", "resistance", "phage")) + Cleaning gff file... + Cleaning pileup file... + Searching for matching annotations... + Error: Can't get S7 properties with `$`. Did you mean `plotdata@plot`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ProActiveVignette.Rmd’ using rmarkdown + ``` + +# ProAE + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/ProAE +* Date/Publication: 2024-10-21 18:10:02 UTC +* Number of recursive dependencies: 134 + +Run `revdepcheck::cloud_details(, "ProAE")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘toxAUC.Rmd’ using rmarkdown + ``` + +# probably + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/tidymodels/probably +* Source code: https://github.com/cran/probably +* Date/Publication: 2024-02-23 03:20:02 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "probably")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + `expected` is a list + ── Failure ('test-cal-plot.R:252:3'): Binary logistic functions work with group argument ── + res$labels (`actual`) not equal to list(...) (`expected`). + + `actual` is an S7 object of class + `expected` is a list + + [ FAIL 2 | WARN 0 | SKIP 46 | PASS 466 ] + Error: Test failures + Execution halted + ``` + +# processmapR + +
+ +* Version: 0.5.6 +* GitHub: https://github.com/bupaverse/processmapr +* Source code: https://github.com/cran/processmapR +* Date/Publication: 2024-12-03 12:50:02 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "processmapR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(processmapR) + + Attaching package: 'processmapR' + + The following object is masked from 'package:stats': + + ... + 10. └─processmapR:::return_plotly(p, plotly) + 11. ├─plotly::ggplotly(p) + 12. └─plotly:::ggplotly.ggplot(p) + 13. └─plotly::gg2list(...) + ── Failure ('test_trace_explorer.R:240:3'): test trace_explorer on eventlog with param `plotly` ── + `chart` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'plotly'. + + [ FAIL 6 | WARN 0 | SKIP 11 | PASS 105 ] + Error: Test failures + Execution halted + ``` + +# profoc + +
+ +* Version: 1.3.3 +* GitHub: https://github.com/BerriJ/profoc +* Source code: https://github.com/cran/profoc +* Date/Publication: 2024-09-21 22:10:02 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "profoc")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘class.Rmd’ using rmarkdown + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + --- finished re-building ‘class.Rmd’ + + --- re-building ‘production.Rmd’ using rmarkdown + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + --- finished re-building ‘production.Rmd’ + + --- re-building ‘profoc.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 20.6Mb + sub-directories of 1Mb or more: + doc 1.4Mb + libs 18.4Mb + ``` + +# projmgr + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/emilyriederer/projmgr +* Source code: https://github.com/cran/projmgr +* Date/Publication: 2024-01-24 05:10:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "projmgr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(projmgr) + > + > test_check("projmgr") + [ FAIL 3 | WARN 2 | SKIP 3 | PASS 106 ] + + ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ + ... + ▆ + 1. ├─testthat::expect_equal(...) at test-viz-waterfall.R:59:5 + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. ├─ggplot2::ggplot_build(m1)$plot + 5. └─S7:::`$.S7_object`(ggplot2::ggplot_build(m1), plot) + + [ FAIL 3 | WARN 2 | SKIP 3 | PASS 106 ] + Error: Test failures + Execution halted + ``` + +# psborrow + +
+ +* Version: 0.2.2 +* GitHub: NA +* Source code: https://github.com/cran/psborrow +* Date/Publication: 2025-02-19 13:40:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "psborrow")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(psborrow) + > + > test_check("psborrow") + Input all is found in pred. Any other input is disregarded. + [ FAIL 20 | WARN 0 | SKIP 1 | PASS 134 ] + + ... + `expected`: "gg" + ── Failure ('test-plots.R:126:5'): Ensure output is producing a ggplot2 object with appropriate parameters ── + p1$labels$yintercept (`actual`) not equal to "ref" (`expected`). + + `actual` is NULL + `expected` is a character vector ('ref') + + [ FAIL 20 | WARN 0 | SKIP 1 | PASS 134 ] + Error: Test failures + Execution halted + ``` + +* checking whether package ‘psborrow’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/psborrow/new/psborrow.Rcheck/00install.out’ for details. + ``` + +# psc + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/richJJackson/psc +* Source code: https://github.com/cran/psc +* Date/Publication: 2025-04-10 13:40:02 UTC +* Number of recursive dependencies: 173 + +Run `revdepcheck::cloud_details(, "psc")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘psc-vignette.Rmd’ using rmarkdown + ``` + +# pscore + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/JWiley/score-project +* Source code: https://github.com/cran/pscore +* Date/Publication: 2022-05-13 22:30:02 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "pscore")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(pscore) + > + > test_check("pscore") + [ FAIL 12 | WARN 1 | SKIP 0 | PASS 14 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test-ldensity.R:12:15'): ldensity produces a ggplot2 graph for all permutations of options ── + pscore:::ldensity(mtcars, x = "mpg", facet = ~cyl, hist = TRUE) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-ldensity.R:13:15'): ldensity produces a ggplot2 graph for all permutations of options ── + pscore:::ldensity(mtcars, x = "mpg", g = "cyl", hist = TRUE) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-ldensity.R:14:15'): ldensity produces a ggplot2 graph for all permutations of options ── + pscore:::ldensity(...) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 12 | WARN 1 | SKIP 0 | PASS 14 ] + Error: Test failures + Execution halted + ``` + +* checking whether package ‘pscore’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. + ``` + +# psycModel + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/jasonmoy28/psycModel +* Source code: https://github.com/cran/psycModel +* Date/Publication: 2023-11-01 06:00:02 UTC +* Number of recursive dependencies: 203 + +Run `revdepcheck::cloud_details(, "psycModel")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(psycModel) + > + > test_check("psycModel") + Loading required namespace: gridExtra + Loading required namespace: qqplotr + Loading required namespace: see + ... + 31. └─ggplot2:::add_ggplot(e1, e2, e2name) + 32. └─ggplot2::ggplot_add(object, p, objectname) + 33. ├─S7::S7_dispatch() + 34. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 35. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 36. └─rlang::abort(...) + + [ FAIL 7 | WARN 3 | SKIP 0 | PASS 37 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘brief-introduction-to-select-syntax.Rmd’ using rmarkdown + --- finished re-building ‘brief-introduction-to-select-syntax.Rmd’ + + --- re-building ‘quick-introduction.Rmd’ using rmarkdown + + Quitting from quick-introduction.Rmd:49-61 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ... + + Error: processing vignette 'quick-introduction.Rmd' failed with diagnostics: + Can't add `x[[i]]` to a object. + --- failed re-building ‘quick-introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘quick-introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘lifecycle’ ‘patchwork’ + All declared Imports should be used. + ``` + +# psyntur + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/psyntur +* Date/Publication: 2021-09-15 09:20:05 UTC +* Number of recursive dependencies: 102 + +Run `revdepcheck::cloud_details(, "psyntur")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘psyntur-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pairs_plot + > ### Title: A pairs plot + > ### Aliases: pairs_plot + > + > ### ** Examples + > + > # A simple pairs plot + > pairs_plot(variables = c("sex_dimorph", "attractive"), + + data = faithfulfaces) + Error: C stack usage 9964580 is too close to the limit + Execution halted + ``` + +# pubh + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/josie-athens/pubh +* Source code: https://github.com/cran/pubh +* Date/Publication: 2024-10-08 05:00:03 UTC +* Number of recursive dependencies: 159 + +Run `revdepcheck::cloud_details(, "pubh")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pubh-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Fentress + > ### Title: Migraine pain reduction. + > ### Aliases: Fentress + > ### Keywords: datasets + > + > ### ** Examples + > + > data(Fentress) + > + > Fentress |> + + strip_error(pain ~ group) + Error: Invalid formula type for ggformula::gf_summary. + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘introduction.Rmd’ using rmarkdown + + Quitting from introduction.Rmd:218-221 [unnamed-chunk-14] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Invalid formula type for ggformula::gf_qqline. + --- + ... + + Error: processing vignette 'introduction.Rmd' failed with diagnostics: + Invalid formula type for ggformula::gf_qqline. + --- failed re-building ‘introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# puff + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/Hammerling-Research-Group/puff +* Source code: https://github.com/cran/puff +* Date/Publication: 2025-04-10 09:40:02 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "puff")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘puff-Ex.R’ failed + The error most likely occurred in: + + > ### Name: create_site_map + > ### Title: Create a Site Map of Sensors and Sources + > ### Aliases: create_site_map + > + > ### ** Examples + > + > source_coords <- c(0, 0, 2.5) + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(puff) + > + > test_check("puff") + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 39 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 39 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘getting-started.Rmd’ using rmarkdown + ``` + +# purgeR + +
+ +* Version: 1.8.2 +* GitHub: NA +* Source code: https://github.com/cran/purgeR +* Date/Publication: 2023-11-28 22:20:02 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "purgeR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ip.Rmd’ using rmarkdown + Computing opportunity of purging values... + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.5Mb + sub-directories of 1Mb or more: + libs 6.7Mb + ``` + +# pvaluefunctions + +
+ +* Version: 1.6.2 +* GitHub: https://github.com/DInfanger/pvaluefunctions +* Source code: https://github.com/cran/pvaluefunctions +* Date/Publication: 2021-12-01 00:40:05 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "pvaluefunctions")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘pvaluefunctions-Ex.R’ failed + The error most likely occurred in: + + > ### Name: conf_dist + > ### Title: Create and Plot _P_-Value Functions, S-Value Functions, + > ### Confidence Distributions and Confidence Densities + > ### Aliases: conf_dist + > + > ### ** Examples + > + ... + + , inverted = FALSE + + , x_scale = "default" + + , plot = TRUE + + ) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the pvaluefunctions package. + Please report the issue to the authors. + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@layout`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘pvaluefun.Rmd’ using rmarkdown + + Quitting from pvaluefun.Rmd:123-157 [ttest] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@layout`? + --- + ... + + Error: processing vignette 'pvaluefun.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@layout`? + --- failed re-building ‘pvaluefun.Rmd’ + + SUMMARY: processing the following file failed: + ‘pvaluefun.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# PvSTATEM + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/mini-pw/PvSTATEM +* Source code: https://github.com/cran/PvSTATEM +* Date/Publication: 2025-02-27 00:30:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "PvSTATEM")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PvSTATEM-Ex.R’ failed + The error most likely occurred in: + + > ### Name: generate_levey_jennings_report + > ### Title: Generate a Levey-Jennings Report for Multiple Plates. + > ### Aliases: generate_levey_jennings_report + > + > ### ** Examples + > + > output_dir <- tempdir(check = TRUE) + ... + 42. └─ggplot2 (local) ``(...) + 43. └─cli::cli_abort(...) + 44. └─rlang::abort(...) + + Quitting from levey_jennings_report_template.Rmd:101-103 [plate-layout] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 6. ├─PvSTATEM::plot_standard_curve_analyte_with_model(...) + 7. │ ├─base::`$<-`(`*tmp*`, "labels", value = ``) + 8. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "labels", value = ``) + 9. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 10. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 11. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 11 | WARN 18 | SKIP 0 | PASS 313 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘example_script.Rmd’ using rmarkdown + ``` + +# qacBase + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/rkabacoff/qacBase +* Source code: https://github.com/cran/qacBase +* Date/Publication: 2022-02-09 22:20:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "qacBase")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘qacBase-Ex.R’ failed + The error most likely occurred in: + + > ### Name: scatter + > ### Title: Scatterplot + > ### Aliases: scatter + > + > ### ** Examples + > + > scatter(cars74, hp, mpg) + > scatter(cars74, wt, hp) + > p <- scatter(ggplot2::mpg, displ, hwy, + + margin="histogram", + + title="Engine Displacement vs. Highway Mileage") + Error: Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) crosstab.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) crosstab.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) crosstab.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) crosstab.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) crosstab.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) crosstab.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) crosstab.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# qad + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/griefl/qad +* Source code: https://github.com/cran/qad +* Date/Publication: 2022-12-14 16:50:02 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "qad")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(qad) + > + > test_check("qad") + Intervalls for the variable x2 + Interval lowerBound upperBound + 1 I1 1 4 + ... + `expected`: "gg" "ggplot" + ── Failure ('test-utilityfunctions.R:33:3'): plot_density ────────────────────── + class(plot_density(fit$mass_matrix)) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) ECBC.Rd:39: Lost braces; missing escapes or markup? + 39 | Let (u_i,v_i) := (F_n(x_i),G_n(y_i)) be the pseudo-observations for i in \{1,\ldots,n\} and (u_1',v_1'),\ldots, (u_m',v_m') the distinct pairs of pseudo-observations with m leq n. Moreover set S_1:=\{0, u_1, \ldots, u_{m_1}\} and S_2:=\{0, v_1,\ldots, v_{m_2}\} and define the quantities t_i,r_i and s_i for i=1,\ldots, m by + | ^ + checkRd: (-1) ECBC.Rd:39: Lost braces; missing escapes or markup? + 39 | Let (u_i,v_i) := (F_n(x_i),G_n(y_i)) be the pseudo-observations for i in \{1,\ldots,n\} and (u_1',v_1'),\ldots, (u_m',v_m') the distinct pairs of pseudo-observations with m leq n. Moreover set S_1:=\{0, u_1, \ldots, u_{m_1}\} and S_2:=\{0, v_1,\ldots, v_{m_2}\} and define the quantities t_i,r_i and s_i for i=1,\ldots, m by + | ^ + checkRd: (-1) ECBC.Rd:49: Lost braces; missing escapes or markup? + 49 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula. + | ^ + checkRd: (-1) ECBC.Rd:49: Lost braces; missing escapes or markup? + ... + | ^ + checkRd: (-1) emp_c_copula.Rd:52: Lost braces; missing escapes or markup? + 52 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula. + | ^ + checkRd: (-1) emp_c_copula.Rd:52: Lost braces; missing escapes or markup? + 52 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula. + | ^ + checkRd: (-1) emp_c_copula.Rd:52: Lost braces; missing escapes or markup? + 52 | and set the measure of the empirical copula mu_{A_n}^B := 1/n sum_{i=1}^m t_i mu_B^{w_i}, where B denotes the product copula. + | ^ + ``` + +# qbinplots + +
+ +* Version: 0.3.3 +* GitHub: https://github.com/edwindj/qbinplots +* Source code: https://github.com/cran/qbinplots +* Date/Publication: 2025-02-24 17:20:02 UTC +* Number of recursive dependencies: 30 + +Run `revdepcheck::cloud_details(, "qbinplots")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘qbinplots-Ex.R’ failed + The error most likely occurred in: + + > ### Name: cond_barplot + > ### Title: Conditional quantile barplot + > ### Aliases: cond_barplot + > + > ### ** Examples + > + > # plots the expected median conditional on Sepal.Width + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +# qdap + +
+ +* Version: 2.4.6 +* GitHub: https://github.com/trinker/qdap +* Source code: https://github.com/cran/qdap +* Date/Publication: 2023-05-11 06:10:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "qdap")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library("testthat") + > library("qdap") + Loading required package: qdapDictionaries + Loading required package: qdapRegex + Loading required package: qdapTools + Loading required package: RColorBrewer + + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-dispersion_plot.R:6:5'): dispersion_plot outputs a ggplot object ── + all(class(m) == c("gg", "ggplot")) is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 217 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.1Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 2.0Mb + help 1.5Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) check_text.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) check_text.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) check_text.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) check_text.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) check_text.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) check_text.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) check_text.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) check_text.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) check_text.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) check_text.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly + ... + checkRd: (-1) word_stats.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) word_stats.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) word_stats.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) word_stats.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) word_stats.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) word_stats.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) word_stats.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) word_stats.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) word_stats.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) word_stats.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘gplots’ + ``` + +# qgcompint + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/alexpkeil1/qgcompint +* Source code: https://github.com/cran/qgcompint +* Date/Publication: 2025-03-12 16:40:02 UTC +* Number of recursive dependencies: 155 + +Run `revdepcheck::cloud_details(, "qgcompint")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘qgcompint-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.qgcompemmfit + > ### Title: Default plotting method for a qgcompemmfit object + > ### Aliases: plot.qgcompemmfit + > + > ### ** Examples + > + > set.seed(50) + ... + > pp1 + theme_linedraw() # can use with other ggplot functions + > + > # overlay (fussy to work with) + > #ppom <- ggplot_build(pp0 + pp1[2] + pp2[[2]] + scale_color_discrete(guide="none")) + > ppom <- ggplot_build(pp0ee + pp1ee[2] + pp2ee[[2]] + scale_color_discrete(guide="none")) + Scale for colour is already present. + Adding another scale for colour, which will replace the existing scale. + > ppom$data[[1]]$colour <- ppom$data[[2]]$colour <- "gray40" # emmval = 0 -> dark gray + Error: Can't get S7 properties with `$`. Did you mean `*tmp*@data`? + Execution halted + ``` + +# qicharts2 + +
+ +* Version: 0.8.0 +* GitHub: https://github.com/anhoej/qicharts2 +* Source code: https://github.com/cran/qicharts2 +* Date/Publication: 2025-05-15 08:00:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "qicharts2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘qicharts2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: bchart + > ### Title: Bernoulli CUSUM chart for binary data (EXPERIMENTAL) + > ### Aliases: bchart + > + > ### ** Examples + > + > # Generate 1000 random successes and failures with success rate = 0.02 + ... + ℹ Please use tidy evaluation idioms with `aes()` + ℹ The deprecated feature was likely used in the qicharts2 package. + Please report the issue to the authors. + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the qicharts2 package. + Please report the issue to the authors. + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +# qlifetable + +
+ +* Version: 0.0.2-6 +* GitHub: NA +* Source code: https://github.com/cran/qlifetable +* Date/Publication: 2025-04-11 22:30:02 UTC +* Number of recursive dependencies: 27 + +Run `revdepcheck::cloud_details(, "qlifetable")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘qlifetable-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.qlifetable + > ### Title: Graphical representation in a 4x4 raster of a qlifetable data + > ### frame. + > ### Aliases: plot.qlifetable + > + > ### ** Examples + > + ... + ! Unknown scale type: + Backtrace: + ▆ + 1. ├─base::plot(out, show.plot = FALSE) + 2. └─qlifetable:::plot.qlifetable(out, show.plot = FALSE) + 3. └─ggplot2::scale_fill_continuous(...) + 4. └─ggplot2:::scale_backward_compatibility(...) + 5. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 6. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + data 5.0Mb + ``` + +# quanteda.textplots + +
+ +* Version: 0.95 +* GitHub: https://github.com/quanteda/quanteda.textplots +* Source code: https://github.com/cran/quanteda.textplots +* Date/Publication: 2024-08-28 03:50:03 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "quanteda.textplots")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > Sys.setenv("R_TESTS" = "") + > Sys.setenv("_R_CHECK_LENGTH_1_CONDITION_" = TRUE) + > + > library("testthat") + > library("quanteda") + Package version: 4.2.0 + ... + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(p)@layout`? + Backtrace: + ▆ + 1. ├─base::unique(ggplot2::ggplot_build(p)$layout$panel_layout$docname) at test-textplot_xray.R:49:5 + 2. ├─ggplot2::ggplot_build(p)$layout + 3. └─S7:::`$.S7_object`(ggplot2::ggplot_build(p), layout) + + [ FAIL 1 | WARN 1 | SKIP 8 | PASS 64 ] + Error: Test failures + Execution halted + ``` + +# quantities + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/r-quantities/quantities +* Source code: https://github.com/cran/quantities +* Date/Publication: 2025-01-18 21:20:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "quantities")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction.Rmd’ using rmarkdown + ``` + +# QuantNorm + +
+ +* Version: 1.0.5 +* GitHub: https://github.com/tengfei-emory/QuantNorm +* Source code: https://github.com/cran/QuantNorm +* Date/Publication: 2019-02-01 20:23:25 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "QuantNorm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘QuantNorm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: connection.matrix + > ### Title: Construct connection matrix for network analysis + > ### Aliases: connection.matrix + > + > ### ** Examples + > + > + > library(network); library(ggplot2); library(sna); library(GGally) #drawing network graph + + ‘network’ 1.19.0 (2024-12-08), part of the Statnet Project + ``` + +# quickPlot + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/PredictiveEcology/quickPlot +* Source code: https://github.com/cran/quickPlot +* Date/Publication: 2023-07-02 05:20:02 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "quickPlot")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > library(testthat) + > test_check("quickPlot") + Loading required package: quickPlot + Error in pgmatrix(grobToPlot, col, real, size, minv, maxv, legend, legendText, : + object 'nrowLegText' not found + Error in pgmatrix(grobToPlot, col, real, size, minv, maxv, legend, legendText, : + object 'nrowLegText' not found + ... + • Plot/test46.png + • Plot/test47.png + • Plot/test5.png + • Plot/test50.png + • Plot/test6.png + • Plot/test7.png + • Plot/test8.png + • Plot/test9.png + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘iii-plotting.Rmd’ using rmarkdown + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘fastshp’ + ``` + +# quickpsy + +
+ +* Version: 0.1.5.1 +* GitHub: NA +* Source code: https://github.com/cran/quickpsy +* Date/Publication: 2019-10-02 15:54:02 UTC +* Number of recursive dependencies: 31 + +Run `revdepcheck::cloud_details(, "quickpsy")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘quickpsy-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotcurves + > ### Title: Plot the curves + > ### Aliases: plotcurves + > + > ### ** Examples + > + > library(MPDiR) # contains the Vernier data + ... + > fit <- quickpsy(Vernier, Phaseshift, NumUpward, N, + + grouping = .(Direction, WaveForm, TempFreq), B = 5) + > plotcurves(fit) + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the quickpsy package. + Please report the issue to the authors. + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@layout`? + Execution halted + ``` + +# quickReg + +
+ +* Version: 1.5.0 +* GitHub: NA +* Source code: https://github.com/cran/quickReg +* Date/Publication: 2017-09-28 06:41:12 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "quickReg")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘quickReg.Rmd’ using rmarkdown + + Quitting from quickReg.Rmd:130-162 [plot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! object is invalid: + - every label must be named. + --- + ... + Error: processing vignette 'quickReg.Rmd' failed with diagnostics: + object is invalid: + - every label must be named. + --- failed re-building ‘quickReg.Rmd’ + + SUMMARY: processing the following file failed: + ‘quickReg.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘psych’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) display_table.Rd:37: Lost braces; missing escapes or markup? + 37 | \item{normtest}{A character indicating test of normality, the default method is \code{\link{shapiro.test}} when sample size no more than 5000, otherwise \code{\link[nortest]{lillie.test}} {Kolmogorov-Smirnov} is used, see package \strong{nortest} for more methods.Use 'shapiro.test', 'lillie.test', 'ad.test', etc to specify methods.} + | ^ + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘PredictABEL’ + ``` + +# QurvE + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/NicWir/QurvE +* Source code: https://github.com/cran/QurvE +* Date/Publication: 2024-01-26 12:40:14 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "QurvE")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘QurvE-Ex.R’ failed + The error most likely occurred in: + + > ### Name: flFitSpline + > ### Title: Perform a smooth spline fit on fluorescence data + > ### Aliases: flFitSpline + > + > ### ** Examples + > + > # load example dataset + ... + > + > # Perform linear fit + > TestFit <- flFitSpline(time = time, + + fl_data = data, + + ID = 'TestFit', + + control = fl.control(fit.opt = 's', x_type = 'time')) + > + > plot(TestFit) + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@layout`? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.0Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 2.1Mb + shiny_app 1.2Mb + ``` + +# r2dii.plot + +
+ +* Version: 0.5.1 +* GitHub: https://github.com/RMI-PACTA/r2dii.plot +* Source code: https://github.com/cran/r2dii.plot +* Date/Publication: 2025-02-18 23:50:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "r2dii.plot")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(r2dii.plot) + > + > test_check("r2dii.plot") + Scale for colour is already present. + Adding another scale for colour, which will replace the existing scale. + ... + 1. └─r2dii.plot:::unique_data1(p, "fill") at test-scale_colour_r2dii_tech.R:35:3 + 2. ├─base::unique(g$data[[1]][[name]]) + 3. ├─g$data + 4. └─S7:::`$.S7_object`(g, "data") + ── Failure ('test-theme_2dii.R:3:3'): outputs a gg theme ─────────────────────── + theme_2dii() inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 17 | WARN 0 | SKIP 41 | PASS 110 ] + Error: Test failures + Execution halted + ``` + +# r2pptx + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/mattle24/r2pptx +* Source code: https://github.com/cran/r2pptx +* Date/Publication: 2021-09-15 18:40:02 UTC +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "r2pptx")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘basic_usage.Rmd’ using rmarkdown + ``` + +# R2sample + +
+ +* Version: 4.0.1 +* GitHub: NA +* Source code: https://github.com/cran/R2sample +* Date/Publication: 2025-04-30 15:50:02 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "R2sample")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘R2sample.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.8Mb + sub-directories of 1Mb or more: + libs 7.4Mb + ``` + +# R4GoodPersonalFinances + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/R4GoodAcademy/R4GoodPersonalFinances +* Source code: https://github.com/cran/R4GoodPersonalFinances +* Date/Publication: 2025-03-13 20:50:05 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "R4GoodPersonalFinances")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘R4GoodPersonalFinances-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_gompertz_calibration + > ### Title: Plotting the results of Gompertz model calibration + > ### Aliases: plot_gompertz_calibration + > + > ### ** Examples + > + > mortality_rates <- + ... + 18. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 19. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 20. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 21. │ └─base::withCallingHandlers(...) + 22. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 23. ├─S7::S7_dispatch() + 24. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 25. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 26. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + • calc_risk_adjusted_return/plot-ra3.svg + • plot_retirement_ruin/rr2.svg + • plot_retirement_ruin/rr3.svg + • plot_risk_adjusted_returns/rar-craa-1.svg + • plot_risk_adjusted_returns/rar-craa-2.svg + • plot_risk_adjusted_returns/rar-craa-3.svg + • plot_risk_adjusted_returns/rar-ra2.svg + • plot_risk_adjusted_returns/rar-ra3.svg + Error: Test failures + Execution halted + ``` + +# r6qualitytools + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/Fabianenc/r6qualitytools +* Source code: https://github.com/cran/r6qualitytools +* Date/Publication: 2024-10-03 19:30:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "r6qualitytools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘r6qualitytools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Distr + > ### Title: Distr-class: Class 'Distr' + > ### Aliases: Distr + > + > ### ** Examples + > + > # Normal + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +# Racmacs + +
+ +* Version: 1.2.9 +* GitHub: https://github.com/acorg/Racmacs +* Source code: https://github.com/cran/Racmacs +* Date/Publication: 2023-11-30 11:40:02 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "Racmacs")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(Racmacs) + > + > test_check("Racmacs") + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 1434 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 9. │ └─plotly::gg2list(...) + 10. │ ├─base::`$<-`(`*tmp*`, "tooltip", value = ``) + 11. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "tooltip", value = ``) + 12. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 13. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 14. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 1 | WARN 1 | SKIP 0 | PASS 1434 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 35.4Mb + sub-directories of 1Mb or more: + doc 5.3Mb + htmlwidgets 1.8Mb + libs 26.1Mb + ``` + +# radiant.basics + +
+ +* Version: 1.6.6 +* GitHub: https://github.com/radiant-rstats/radiant.basics +* Source code: https://github.com/cran/radiant.basics +* Date/Publication: 2024-05-15 04:30:07 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "radiant.basics")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘radiant.basics-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.clt + > ### Title: Plot method for the Central Limit Theorem simulation + > ### Aliases: plot.clt + > + > ### ** Examples + > + > clt("Uniform", 100, 100, unif_min = 10, unif_max = 20) %>% plot() + ... + 11. └─base_ops[[.Generic]](e1, e2) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. └─ggplot2::ggplot_add(object, p, objectname) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. └─rlang::abort(...) + Execution halted + ``` + +# radiant.data + +
+ +* Version: 1.6.7 +* GitHub: https://github.com/radiant-rstats/radiant.data +* Source code: https://github.com/cran/radiant.data +* Date/Publication: 2024-10-23 04:20:02 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "radiant.data")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘radiant.data-Ex.R’ failed + The error most likely occurred in: + + > ### Name: visualize + > ### Title: Visualize data using ggplot2 + > ### Aliases: visualize + > + > ### ** Examples + > + > visualize(diamonds, "price:cut", type = "dist", fillcol = "red") + ... + 12. │ └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. │ └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. │ └─ggplot2::ggplot_add(object, p, objectname) + 15. │ ├─S7::S7_dispatch() + 16. │ └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. │ └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. │ └─rlang::abort(...) + 19. └─radiant.data (local) ``(.) + 20. └─base::print(x) + Execution halted + ``` + +# radiant.model + +
+ +* Version: 1.6.7 +* GitHub: https://github.com/radiant-rstats/radiant.model +* Source code: https://github.com/cran/radiant.model +* Date/Publication: 2024-10-11 05:50:02 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "radiant.model")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘radiant.model-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.crtree + > ### Title: Plot method for the crtree function + > ### Aliases: plot.crtree + > + > ### ** Examples + > + > result <- crtree(titanic, "survived", c("pclass", "sex"), lev = "Yes") + ... + 13. │ └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. │ └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. │ └─ggplot2::ggplot_add(object, p, objectname) + 16. │ ├─S7::S7_dispatch() + 17. │ └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. │ └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. │ └─rlang::abort(...) + 20. └─radiant.model (local) ``(.) + 21. └─base::print(x) + Execution halted + ``` + +# radiant.multivariate + +
+ +* Version: 1.6.7 +* GitHub: https://github.com/radiant-rstats/radiant.multivariate +* Source code: https://github.com/cran/radiant.multivariate +* Date/Publication: 2025-03-10 18:40:02 UTC +* Number of recursive dependencies: 181 + +Run `revdepcheck::cloud_details(, "radiant.multivariate")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘radiant.multivariate-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.conjoint + > ### Title: Plot method for the conjoint function + > ### Aliases: plot.conjoint + > + > ### ** Examples + > + > result <- conjoint(mp3, rvar = "Rating", evar = "Memory:Shape") + ... + 13. │ └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. │ └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. │ └─ggplot2::ggplot_add(object, p, objectname) + 16. │ ├─S7::S7_dispatch() + 17. │ └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. │ └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. │ └─rlang::abort(...) + 20. └─radiant.multivariate (local) ``(.) + 21. └─base::print(x) + Execution halted + ``` + +# Radviz + +
+ +* Version: 0.9.4 +* GitHub: https://github.com/yannabraham/Radviz +* Source code: https://github.com/cran/Radviz +* Date/Publication: 2025-05-09 06:30:02 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "Radviz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Radviz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Radviz-package + > ### Title: Radviz: Project Multidimensional Data in 2D Space + > ### Aliases: Radviz Radviz-package + > ### Keywords: internal + > + > ### ** Examples + > + ... + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the Radviz package. + Please report the issue at . + > plot(rv,anchors.only=FALSE) + Error in plot.radviz(rv, anchors.only = FALSE) : + 'language' object cannot be coerced to type 'double' + Calls: plot -> plot.radviz + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘multivariate_analysis.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.6Mb + sub-directories of 1Mb or more: + doc 3.9Mb + libs 2.5Mb + ``` + +# RamanMP + +
+ +* Version: 1.0 +* GitHub: NA +* Source code: https://github.com/cran/RamanMP +* Date/Publication: 2021-07-09 08:10:04 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "RamanMP")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RamanMP-Ex.R’ failed + The error most likely occurred in: + + > ### Name: peak.finder + > ### Title: Peaks identification + > ### Aliases: peak.finder + > ### Keywords: peaks + > + > ### ** Examples + > + > data("MPdatabase") + > peak.data<-peak.finder(MPdatabase[,c(1,7)], threshold = 500, m=7) + Error: object properties are invalid: + - @size must be , , or , not + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.1Mb + sub-directories of 1Mb or more: + data 8.0Mb + ``` + +# randomForestExplainer + +
+ +* Version: 0.10.1 +* GitHub: https://github.com/ModelOriented/randomForestExplainer +* Source code: https://github.com/cran/randomForestExplainer +* Date/Publication: 2020-07-11 20:30:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "randomForestExplainer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘randomForestExplainer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_importance_ggpairs + > ### Title: Plot importance measures with ggpairs + > ### Aliases: plot_importance_ggpairs + > + > ### ** Examples + > + > forest <- randomForest::randomForest(Species ~ ., data = iris, localImp = TRUE, ntree = 200) + > frame <- measure_importance(forest, measures = c("mean_min_depth", "times_a_root")) + > plot_importance_ggpairs(frame, measures = c("mean_min_depth", "times_a_root")) + Error in `+.gg`(e1, item) : + 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character' + Calls: plot_importance_ggpairs -> +.gg -> add_list_to_ggmatrix -> +.gg + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(randomForestExplainer) + > + > test_check("randomForestExplainer") + [ FAIL 12 | WARN 71 | SKIP 0 | PASS 49 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + Backtrace: + ▆ + 1. └─randomForestExplainer::plot_importance_rankings(ranger_s) at test_ranger.R:185:3 + 2. └─GGally:::`+.gg`(plot, ggtitle(main)) + 3. └─GGally:::add_list_to_ggmatrix(e1, e2) + 4. └─GGally:::`+.gg`(e1, item) + + [ FAIL 12 | WARN 71 | SKIP 0 | PASS 49 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘randomForestExplainer.Rmd’ using rmarkdown + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# RandomWalker + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/spsanderson/RandomWalker +* Source code: https://github.com/cran/RandomWalker +* Date/Publication: 2025-05-06 13:00:05 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "RandomWalker")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RandomWalker-Ex.R’ failed + The error most likely occurred in: + + > ### Name: rw30 + > ### Title: Generate Random Walks + > ### Aliases: rw30 + > + > ### ** Examples + > + > # Generate random walks and print the result + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘getting-started.Rmd’ using rmarkdown + + Quitting from getting-started.Rmd:80-84 [random_walk_visual_example] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'getting-started.Rmd' failed with diagnostics: + Can't add `plot_annotations` to a object. + --- failed re-building ‘getting-started.Rmd’ + + SUMMARY: processing the following file failed: + ‘getting-started.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# RARfreq + +
+ +* Version: 0.1.5 +* GitHub: NA +* Source code: https://github.com/cran/RARfreq +* Date/Publication: 2024-05-07 12:40:03 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "RARfreq")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RARfreq-Ex.R’ failed + The error most likely occurred in: + + > ### Name: SEU_power_comparison_Power_vs_Trt + > ### Title: Comparison of Powers for Treatment Effects under Different SEU + > ### Randomization Methods (Binary Responses) + > ### Aliases: SEU_power_comparison_Power_vs_Trt + > + > ### ** Examples + > + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# rassta + +
+ +* Version: 1.0.6 +* GitHub: https://github.com/bafuentes/rassta +* Source code: https://github.com/cran/rassta +* Date/Publication: 2024-08-19 06:20:13 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "rassta")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rassta-Ex.R’ failed + The error most likely occurred in: + + > ### Name: select_functions + > ### Title: Select Constrained Univariate Distribution Functions + > ### Aliases: select_functions + > + > ### ** Examples + > + > require(terra) + ... + + ) + > tvars <- terra::rast(tf) + > # Single-layer SpatRaster of topographic classification units + > ## 5 classification units + > tcf <- list.files(path = p, pattern = "topography.tif", full.names = TRUE) + > tcu <- terra::rast(tcf) + > # Automatic selection of distribution functions + > tdif <- select_functions(cu.rast = tcu, var.rast = tvars, fun = mean) + Error: C stack usage 9961940 is too close to the limit + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("rassta") + + } + + Attaching package: 'rassta' + + ... + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests + test_select_functions.R....... 0 tests Error: C stack usage 9962084 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘classunits.Rmd’ using rmarkdown + --- finished re-building ‘classunits.Rmd’ + + --- re-building ‘modeling.Rmd’ using rmarkdown + --- finished re-building ‘modeling.Rmd’ + + --- re-building ‘sampling.Rmd’ using rmarkdown + --- finished re-building ‘sampling.Rmd’ + + ... + --- finished re-building ‘similarity.Rmd’ + + --- re-building ‘stratunits.Rmd’ using rmarkdown + --- finished re-building ‘stratunits.Rmd’ + + SUMMARY: processing the following file failed: + ‘signature.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# rasterdiv + +
+ +* Version: 0.3.6 +* GitHub: https://github.com/mattmar/rasterdiv +* Source code: https://github.com/cran/rasterdiv +* Date/Publication: 2024-11-06 11:20:03 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "rasterdiv")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘rasterdiv_01_Basics.Rmd’ using rmarkdown + ``` + +# rasterpic + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/dieghernan/rasterpic +* Source code: https://github.com/cran/rasterpic +* Date/Publication: 2025-03-19 17:50:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "rasterpic")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘rasterpic.Rmd’ using rmarkdown + + Quitting from rasterpic.Rmd:28-47 [setup] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'rasterpic.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘rasterpic.Rmd’ + + SUMMARY: processing the following file failed: + ‘rasterpic.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# rater + +
+ +* Version: 1.3.1 +* GitHub: https://github.com/jeffreypullin/rater +* Source code: https://github.com/cran/rater +* Date/Publication: 2023-09-11 17:40:02 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "rater")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(rater) + * The rater package uses `Stan` to fit bayesian models. + * If you are working on a local, multicore CPU with excess RAM please call: + * options(mc.cores = parallel::detectCores()) + * This will allow Stan to run inference on multiple cores in parallel. + > + ... + ── Failure ('test_plotting.R:65:3'): plot_theta_points output has correct type ── + get_geoms(ds_plot) (`actual`) not equal to c("GeomPoint", "GeomErrorbar") (`expected`). + + `names(actual)` is a character vector ('geom_point', 'geom_errorbar') + `names(expected)` is absent + + [ FAIL 4 | WARN 0 | SKIP 6 | PASS 374 ] + Error: Test failures + In addition: There were 12 warnings (use warnings() to see them) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 124.5Mb + sub-directories of 1Mb or more: + libs 123.7Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) as_mcmc.list.Rd:5: Lost braces; missing escapes or markup? + 5 | \title{Convert a rater_fit object to a {coda} \code{mcmc.list} object.} + | ^ + checkRd: (-1) as_mcmc.list.Rd:16: Lost braces; missing escapes or markup? + 16 | Convert a rater_fit object to a {coda} \code{mcmc.list} object. + | ^ + checkRd: (-1) as_mcmc.list.Rd:13: Lost braces; missing escapes or markup? + 13 | A {coda} mcmc.list object. + | ^ + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# ratlas + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/atlas-aai/ratlas +* Source code: https://github.com/cran/ratlas +* Date/Publication: 2024-11-06 16:20:02 UTC +* Number of recursive dependencies: 136 + +Run `revdepcheck::cloud_details(, "ratlas")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ratlas) + NOTE: Either Arial Narrow or Montserrat fonts are required to use these themes. + Please use ratlas::import_montserrat() to install Montserrat and + if Arial Narrow is not on your system, please see https://bit.ly/arialnarrow + > + ... + • set-theme/an-plasma.svg + • set-theme/an-viridis.svg + • stat-bin/bins30-bound0.svg + • stat-bin/no-color-hist.svg + • stat-bin/one-bin.svg + • stat-bin/trimmed-hist-bound0.svg + • stat-bin/trimmed-hist-center0.svg + • themes/theme-atlas.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘plotting.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.1Mb + sub-directories of 1Mb or more: + doc 2.6Mb + rstudio 1.6Mb + ``` + +# RavenR + +
+ +* Version: 2.2.2 +* GitHub: https://github.com/rchlumsk/RavenR +* Source code: https://github.com/cran/RavenR +* Date/Publication: 2024-05-07 03:30:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "RavenR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RavenR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: rvn_met_recordplot + > ### Title: EC Climate Gauge Record Overlap Visualization + > ### Aliases: rvn_met_recordplot + > + > ### ** Examples + > + > # load metadata from RavenR sample data + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─RavenR::rvn_met_recordplot(...) + 2. └─ggplot2::scale_color_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +# RBesT + +
+ +* Version: 1.8-2 +* GitHub: https://github.com/Novartis/RBesT +* Source code: https://github.com/cran/RBesT +* Date/Publication: 2025-04-25 18:30:02 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "RBesT")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RBesT-Ex.R’ failed + The error most likely occurred in: + + > ### Name: mix + > ### Title: Mixture Distributions + > ### Aliases: mix dmix pmix qmix rmix [[.mix + > + > ### ** Examples + > + > ## a beta mixture + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 94.6Mb + sub-directories of 1Mb or more: + libs 93.2Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# rBiasCorrection + +
+ +* Version: 0.3.5 +* GitHub: https://github.com/kapsner/rBiasCorrection +* Source code: https://github.com/cran/rBiasCorrection +* Date/Publication: 2025-04-05 13:50:02 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "rBiasCorrection")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rBiasCorrection-Ex.R’ failed + The error most likely occurred in: + + > ### Name: create_exampleplot + > ### Title: create_exampleplot helper function + > ### Aliases: create_exampleplot + > + > ### ** Examples + > + > gdat <- rBiasCorrection::example._plot.df_agg + ... + + coef_cubic = coef_c, + + plot_height = 5, + + plot_width = 7.5, + + plot_textsize = 1, + + filename = paste0(tempdir(), "/exampleplot.png") + + ) + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: create_exampleplot ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # https://github.com/Rdatatable/data.table/issues/5658 + > Sys.setenv("OMP_THREAD_LIMIT" = 2) + > Sys.setenv("Ncpu" = 2) + > + > library(testthat) + > library(rBiasCorrection) + > + ... + 29. ├─grid::validDetails(x) + 30. └─grid:::validDetails.text(x) + 31. ├─base::as.character(x$label) + 32. └─base::as.character.default(x$label) + + [ FAIL 4 | WARN 30 | SKIP 12 | PASS 30 ] + Error: Test failures + Execution halted + Error in deferred_run(env) : could not find function "deferred_run" + Calls: + ``` + +# rbioacc + +
+ +* Version: 1.2.1 +* GitHub: NA +* Source code: https://github.com/cran/rbioacc +* Date/Publication: 2024-02-27 01:40:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "rbioacc")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(rbioacc) + > + > test_check("rbioacc") + + SAMPLING FOR MODEL 'TK' NOW (CHAIN 1). + Chain 1: + ... + `expected`: TRUE + ── Failure ('test-ppc.R:16:5'): plot ppc ─────────────────────────────────────── + all(class(ppc(fit_MGSG)) == c("gg", "ggplot")) is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 20 | WARN 81 | SKIP 9 | PASS 60 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 94.5Mb + sub-directories of 1Mb or more: + libs 93.8Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# rbiom + +
+ +* Version: 2.2.0 +* GitHub: https://github.com/cmmr/rbiom +* Source code: https://github.com/cran/rbiom +* Date/Publication: 2025-04-04 20:20:02 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "rbiom")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rbiom-Ex.R’ failed + The error most likely occurred in: + + > ### Name: adiv_boxplot + > ### Title: Visualize alpha diversity with boxplots. + > ### Aliases: adiv_boxplot + > + > ### ** Examples + > + > library(rbiom) + > + > biom <- rarefy(hmp50) + > + > adiv_boxplot(biom, x="Body Site", stat.by="Body Site") + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.r’ + Running the tests in ‘tests/testthat.r’ failed. + Complete output: + > library(testthat) + > library(rbiom) + > + > test_check("rbiom") + [ FAIL 9 | WARN 27 | SKIP 26 | PASS 175 ] + + ══ Skipped tests (26) ══════════════════════════════════════════════════════════ + ... + 11. ├─rbiom:::plot_build(.) + 12. │ ├─base::`$<-`(`*tmp*`, "plot_env", value = ``) + 13. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "plot_env", value = ``) + 14. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 15. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 16. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 9 | WARN 27 | SKIP 26 | PASS 175 ] + Error: Test failures + Execution halted + ``` + +# RcmdrPlugin.RiskDemo + +
+ +* Version: 3.2 +* GitHub: NA +* Source code: https://github.com/cran/RcmdrPlugin.RiskDemo +* Date/Publication: 2024-02-06 09:20:02 UTC +* Number of recursive dependencies: 200 + +Run `revdepcheck::cloud_details(, "RcmdrPlugin.RiskDemo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RcmdrPlugin.RiskDemo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: drawIncidenceFin + > ### Title: Plotting incidence curves of an epidemic with Finnish data + > ### Aliases: drawIncidenceFin + > + > ### ** Examples + > + > data(dataCovidFin) + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# rcssci + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/popnie/RCSsci +* Source code: https://github.com/cran/rcssci +* Date/Publication: 2023-02-15 21:20:02 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "rcssci")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rcssci-Ex.R’ failed + The error most likely occurred in: + + > ### Name: rcs_cox.lshap + > ### Title: rcs_cox.lshap + > ### Aliases: rcs_cox.lshap + > + > ### ** Examples + > + > library(rcssci) + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +# rddensity + +
+ +* Version: 2.6 +* GitHub: NA +* Source code: https://github.com/cran/rddensity +* Date/Publication: 2024-10-06 08:30:02 UTC +* Number of recursive dependencies: 27 + +Run `revdepcheck::cloud_details(, "rddensity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rddensity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: rddensity + > ### Title: Manipulation Testing Using Local Polynomial Density Estimation + > ### Aliases: rddensity + > + > ### ** Examples + > + > ### Continuous Density + ... + 22. └─vctrs (local) ``() + 23. └─vctrs::vec_default_ptype2(...) + 24. ├─base::withRestarts(...) + 25. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 26. │ └─base (local) doWithOneRestart(return(expr), restart) + 27. └─vctrs::stop_incompatible_type(...) + 28. └─vctrs:::stop_incompatible(...) + 29. └─vctrs:::stop_vctrs(...) + 30. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# reappraised + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/reappraised +* Date/Publication: 2023-10-06 04:20:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "reappraised")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘reappraised.Rmd’ using rmarkdown + ``` + +# reda + +
+ +* Version: 0.5.4 +* GitHub: https://github.com/wenjie2wang/reda +* Source code: https://github.com/cran/reda +* Date/Publication: 2022-07-08 21:50:02 UTC +* Number of recursive dependencies: 51 + +Run `revdepcheck::cloud_details(, "reda")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > if (requireNamespace("tinytest", quietly = TRUE) && + + utils::packageVersion("tinytest") >= "1.1.0") { + + + + ## Set a seed to make the test deterministic + + set.seed(808) + + + + tinytest::test_package("reda", ncpu = NULL, + ... + call| --> lty = 1:4, col = 1:4)), c("gg", "ggplot")) + diff| Lengths (2, 4) differ (string compare on first 2) + diff| 2 string mismatches + ----- FAILED[data]: test_rateReg.R<152--152> + call| expect_equivalent(class(plot(mcf_splineFit)), c("gg", "ggplot")) + diff| Lengths (2, 4) differ (string compare on first 2) + diff| 2 string mismatches + Error: 8 out of 191 tests failed + In addition: There were 16 warnings (use warnings() to see them) + Execution halted + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +* checking installed package size ... NOTE + ``` + installed size is 8.0Mb + sub-directories of 1Mb or more: + doc 3.3Mb + libs 4.0Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) simEvent.Rd:112: Lost braces; missing escapes or markup? + 112 | and another argument named {zCoef} for covariate coefficient vector. + | ^ + ``` + +# redist + +
+ +* Version: 4.2.0 +* GitHub: https://github.com/alarm-redist/redist +* Source code: https://github.com/cran/redist +* Date/Publication: 2024-01-13 13:20:02 UTC +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "redist")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘redist-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compare_plans + > ### Title: Make a comparison between two sets of plans + > ### Aliases: compare_plans + > + > ### ** Examples + > + > data(iowa) + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘common_args.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 29.4Mb + sub-directories of 1Mb or more: + data 1.2Mb + libs 25.3Mb + ``` + +# registr + +
+ +* Version: 2.1.0 +* GitHub: NA +* Source code: https://github.com/cran/registr +* Date/Publication: 2022-10-02 21:40:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "registr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘incomplete_curves.Rmd’ using rmarkdown + ``` + +## In both + +* checking C++ specification ... NOTE + ``` + Specified C++11: please drop specification unless essential + ``` + +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + doc 1.8Mb + libs 3.1Mb + ``` + +# regressinator + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/capnrefsmmat/regressinator +* Source code: https://github.com/cran/regressinator +* Date/Publication: 2024-08-16 15:40:02 UTC +* Number of recursive dependencies: 126 + +Run `revdepcheck::cloud_details(, "regressinator")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘linear-regression-diagnostics.Rmd’ using rmarkdown + ``` + +# regtomean + +
+ +* Version: 1.2 +* GitHub: NA +* Source code: https://github.com/cran/regtomean +* Date/Publication: 2024-12-17 15:00:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "regtomean")` for more info + +
+ +## Newly broken + +* checking whether package ‘regtomean’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::set_theme’ by ‘sjPlot::set_theme’ when loading ‘regtomean’ + See ‘/tmp/workdir/regtomean/new/regtomean.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘plyr’ + ``` + +# reliabilitydiag + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/aijordan/reliabilitydiag +* Source code: https://github.com/cran/reliabilitydiag +* Date/Publication: 2022-06-29 00:20:06 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "reliabilitydiag")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘reliabilitydiag-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.reliabilitydiag + > ### Title: Plotting reliability diagram objects + > ### Aliases: plot.reliabilitydiag autoplot.reliabilitydiag + > ### autolayer.reliabilitydiag + > + > ### ** Examples + > + ... + Warning in (function (mapping = NULL, data = NULL, stat = "identity", position = "identity", : + All aesthetics have length 1, but the data has 92 rows. + ℹ Please consider using `annotate()` or provide this layer with data containing + a single row. + Warning in (function (mapping = NULL, data = NULL, stat = "identity", position = "identity", : + All aesthetics have length 1, but the data has 92 rows. + ℹ Please consider using `annotate()` or provide this layer with data containing + a single row. + Error: Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + Execution halted + ``` + +# relliptical + +
+ +* Version: 1.3.0 +* GitHub: NA +* Source code: https://github.com/cran/relliptical +* Date/Publication: 2024-02-07 12:50:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "relliptical")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘relliptical-Ex.R’ failed + The error most likely occurred in: + + > ### Name: rtelliptical + > ### Title: Sampling Random Numbers from Truncated Multivariate Elliptical + > ### Distributions + > ### Aliases: rtelliptical + > + > ### ** Examples + > + ... + > mu = c(0, 0) + > Sigma = matrix(c(1,-0.5,-0.5,1), 2, 2) + > lower = c(-2, -2) + > upper = c(3, 2) + > sample4 = rtelliptical(2000, mu, Sigma, lower, upper, gFun=function(t){t^(-1/2)*exp(-2*t^(1/4))}) + > f1 = ggplot(data.frame(sample4), aes(x=X1,y=X2)) + geom_point(size=0.50) + + + labs(x=expression(X[1]), y=expression(X[2]), subtitle="Kotz(2,1/4,1/2)") + theme_bw() + > ggMarginal(f1, type="histogram", fill="grey") + Error: Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.7Mb + sub-directories of 1Mb or more: + libs 6.5Mb + ``` + +# rempsyc + +
+ +* Version: 0.1.9 +* GitHub: https://github.com/rempsyc/rempsyc +* Source code: https://github.com/cran/rempsyc +* Date/Publication: 2025-02-01 23:40:05 UTC +* Number of recursive dependencies: 176 + +Run `revdepcheck::cloud_details(, "rempsyc")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rempsyc-Ex.R’ failed + The error most likely occurred in: + + > ### Name: nice_normality + > ### Title: Easy normality check per group + > ### Aliases: nice_normality + > ### Keywords: QQ density distribution normality plots + > + > ### ** Examples + > + ... + 15. └─base_ops[[.Generic]](e1, e2) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 18. └─ggplot2:::add_ggplot(e1, e2, e2name) + 19. └─ggplot2::ggplot_add(object, p, objectname) + 20. ├─S7::S7_dispatch() + 21. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 22. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 23. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(rempsyc) + Suggested APA citation: Thériault, R. (2023). rempsyc: Convenience functions for psychology. + Journal of Open Source Software, 8(87), 5466. https://doi.org/10.21105/joss.05466 + > + > test_check("rempsyc") + [ FAIL 40 | WARN 2 | SKIP 20 | PASS 5 ] + ... + ── Failure ('test-nice_violin.R:182:3'): nice_violin ─────────────────────────── + `x12` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'/'ggplot2'. + ── Failure ('test-plot_outliers.R:10:3'): plot_outliers ──────────────────────── + `x1` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'/'ggplot2'. + ── Failure ('test-plot_outliers.R:33:3'): plot_outliers ──────────────────────── + `x2` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'/'ggplot2'. + + [ FAIL 40 | WARN 2 | SKIP 20 | PASS 5 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘assumptions.Rmd’ using rmarkdown + + Quitting from assumptions.Rmd:54-57 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'assumptions.Rmd' failed with diagnostics: + Can't add `x[[i]]` to a object. + --- failed re-building ‘assumptions.Rmd’ + + --- re-building ‘contrasts.Rmd’ using rmarkdown + ``` + +# reporter + +
+ +* Version: 1.4.4 +* GitHub: https://github.com/dbosak01/reporter +* Source code: https://github.com/cran/reporter +* Date/Publication: 2024-03-19 19:30:03 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "reporter")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘reporter-Ex.R’ failed + The error most likely occurred in: + + > ### Name: create_plot + > ### Title: Create plot content + > ### Aliases: create_plot + > + > ### ** Examples + > + > library(reporter) + ... + + titles("Figure 1.0", "MTCARS Miles per Cylinder Plot") %>% + + set_margins(top = 1, bottom = 1) %>% + + add_content(plt) %>% + + footnotes("* Motor Trend, 1974") %>% + + page_footer("Time", "Confidential", "Page [pg] of [tpg]") + > + > # Write out report + > write_report(rpt) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(reporter) + Loading required package: common + > library(fmtr) + > library(dplyr) + + Attaching package: 'dplyr' + ... + 5. │ └─reporter:::create_plot_pages_text(...) + 6. │ ├─base::`$<-`(`*tmp*`, "data", value = ``) + 7. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "data", value = ``) + 8. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 9. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 10. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 20 | WARN 0 | SKIP 0 | PASS 1650 ] + Error: Test failures + Execution halted + ``` + +# reportRmd + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/reportRmd +* Date/Publication: 2025-01-24 18:40:02 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "reportRmd")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘reportRmd-Ex.R’ failed + The error most likely occurred in: + + > ### Name: forestplot2 + > ### Title: Create a forest plot using ggplot2 + > ### Aliases: forestplot2 + > ### Keywords: plot + > + > ### ** Examples + > + ... + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggplot2 package. + Please report the issue at . + Warning in geom_errorbar(mapping = mapping, data = data, stat = stat, position = position, : + Ignoring unknown parameters: `height` + Warning: Vectorized input to `element_text()` is not officially supported. + ℹ Results may be unexpected or may change in future versions of ggplot2. + Error: object properties are invalid: + - @face must be a string, not a character vector + Execution halted + ``` + +# reReg + +
+ +* Version: 1.4.7 +* GitHub: https://github.com/stc04003/reReg +* Source code: https://github.com/cran/reReg +* Date/Publication: 2024-10-07 20:30:02 UTC +* Number of recursive dependencies: 43 + +Run `revdepcheck::cloud_details(, "reReg")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘reReg-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.Recur + > ### Title: Produce Event Plot or Mean Cumulative Function Plot + > ### Aliases: plot.Recur + > ### Keywords: Plots + > + > ### ** Examples + > + ... + Ignoring empty aesthetic: `width`. + > + > ## With (hypothetical) calendar times + > simDat2 <- simDat + > simDat2$t.start <- as.Date(simDat2$t.start + simDat2$x2 * 5, origin = "20-01-01") + > simDat2$t.stop <- as.Date(simDat2$t.stop + simDat2$x2 * 5, origin = "20-01-01") + > reObj3 <- with(simDat2, Recur(t.start %to% t.stop, id, event, status)) + > plot(reObj3, event.calendarTime = TRUE) + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(gg)@layout`? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.3Mb + sub-directories of 1Mb or more: + libs 4.8Mb + ``` + +# reservr + +
+ +* Version: 0.0.3 +* GitHub: https://github.com/AshesITR/reservr +* Source code: https://github.com/cran/reservr +* Date/Publication: 2024-06-24 16:40:02 UTC +* Number of recursive dependencies: 133 + +Run `revdepcheck::cloud_details(, "reservr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘reservr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: dist_bdegp + > ### Title: Construct a BDEGP-Family + > ### Aliases: dist_bdegp + > + > ### ** Examples + > + > dist <- dist_bdegp(n = 1, m = 2, u = 10, epsilon = 3) + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(reservr) + > + > test_check("reservr") + ── Skip ('/tmp/workdir/reservr/new/reservr.Rcheck/tests/testthat/helpers.R:13:3'): set floatx to 64-bit ── + Reason: TensorFlow not available for testing + + ... + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 29 | PASS 1209 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘distributions.Rmd’ using rmarkdown + + Quitting from distributions.Rmd:169-227 [unnamed-chunk-10] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'distributions.Rmd' failed with diagnostics: + Can't add `patchwork::guide_area()` to a object. + --- failed re-building ‘distributions.Rmd’ + + --- re-building ‘jss_paper.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 15.9Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 1.2Mb + libs 12.8Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# ResIN + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/pwarncke77/ResIN +* Source code: https://github.com/cran/ResIN +* Date/Publication: 2024-10-04 10:40:03 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "ResIN")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ResIN-VIGNETTE.Rmd’ using rmarkdown + + Quitting from ResIN-VIGNETTE.Rmd:18-70 [silent intro] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + + Error: processing vignette 'ResIN-VIGNETTE.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘ResIN-VIGNETTE.Rmd’ + + SUMMARY: processing the following file failed: + ‘ResIN-VIGNETTE.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1 marked UTF-8 string + ``` + +# RestoreNet + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/RestoreNet +* Date/Publication: 2024-02-15 11:00:02 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "RestoreNet")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RestoreNet-Ex.R’ failed + The error most likely occurred in: + + > ### Name: get.scatterpie + > ### Title: Clonal pie-chart + > ### Aliases: get.scatterpie + > + > ### ** Examples + > + > rcts <- c("A->1", "B->1", "C->1", "D->1", + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘RestoreNet.ltx’ using tex + Error: processing vignette 'RestoreNet.ltx' failed with diagnostics: + Running 'texi2dvi' on 'RestoreNet.ltx' failed. + LaTeX errors: + ! LaTeX Error: File `realboxes.sty' not found. + + Type X to quit or to proceed, + or enter new name. (Default extension: sty) + ... + l.12 \usepackage + {amssymb}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘RestoreNet.ltx’ + + SUMMARY: processing the following file failed: + ‘RestoreNet.ltx’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ReturnCurves + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/lidiamandre/ReturnCurves +* Source code: https://github.com/cran/ReturnCurves +* Date/Publication: 2025-02-05 17:40:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "ReturnCurves")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ReturnCurves-Ex.R’ failed + The error most likely occurred in: + + > ### Name: adf_est + > ### Title: Estimation of the Angular Dependence Function (ADF) + > ### Aliases: adf_est + > + > ### ** Examples + > + > library(ReturnCurves) + ... + 22. └─vctrs::vec_default_cast(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_cast(...) + 27. └─vctrs::stop_incompatible_type(...) + 28. └─vctrs:::stop_incompatible(...) + 29. └─vctrs:::stop_vctrs(...) + 30. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘ReturnCurves.Rmd’ using rmarkdown + + Quitting from ReturnCurves.Rmd:309-312 [plotsadfest] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'ReturnCurves.Rmd' failed with diagnostics: + Can't convert `na_value` to . + --- failed re-building ‘ReturnCurves.Rmd’ + + SUMMARY: processing the following file failed: + ‘ReturnCurves.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# RevGadgets + +
+ +* Version: 1.2.1 +* GitHub: https://github.com/revbayes/RevGadgets +* Source code: https://github.com/cran/RevGadgets +* Date/Publication: 2023-11-29 20:30:02 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "RevGadgets")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(RevGadgets) + > + > test_check("RevGadgets") + + | + | | 0% + ... + 2. │ └─RevGadgets:::plotTreeFull(...) + 3. │ ├─base::`$<-`(`*tmp*`, "data", value = ``) + 4. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "data", value = ``) + 5. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 6. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 7. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 4 | WARN 8 | SKIP 0 | PASS 132 ] + Error: Test failures + Execution halted + ``` + +# rfishdraw + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/Otoliths/rfishdraw +* Source code: https://github.com/cran/rfishdraw +* Date/Publication: 2021-09-08 09:30:01 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "rfishdraw")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘rfishdraw-vegnette.Rmd’ using rmarkdown + node:internal/modules/cjs/loader:1137 + throw err; + ^ + + Error: Cannot find module '/tmp/workdir/rfishdraw/new/rfishdraw.Rcheck/vign_test/rfishdraw/vignettes/inst/fishdraw.js' + at Module._resolveFilename (node:internal/modules/cjs/loader:1134:15) + at Module._load (node:internal/modules/cjs/loader:975:27) + at Function.executeUserEntryPoint [as runMain] (node:internal/modules/run_main:128:12) + at node:internal/main/run_main_module:28:49 { + code: 'MODULE_NOT_FOUND', + requireStack: [] + } + + Node.js v18.19.1 + ``` + +# RGCCA + +
+ +* Version: 3.0.3 +* GitHub: https://github.com/rgcca-factory/RGCCA +* Source code: https://github.com/cran/RGCCA +* Date/Publication: 2023-12-11 21:00:06 UTC +* Number of recursive dependencies: 192 + +Run `revdepcheck::cloud_details(, "RGCCA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RGCCA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: rgcca_permutation + > ### Title: Tune the S/RGCCA hyper-parameters by permutation + > ### Aliases: rgcca_permutation + > + > ### ** Examples + > + > #################################### + ... + + par_type = "tau", + + par_length = 10, n_perms = 2, + + n_cores = 1, verbose = TRUE + + ) + > + > print(fit) + RGCCA permutation object obtained with 10 sets of parameters and 2 permutations each. + > plot(fit) + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘RGCCA.Rmd’ using rmarkdown + + Quitting from RGCCA.Rmd:802-804 [fig-permutation] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + + Error: processing vignette 'RGCCA.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘RGCCA.Rmd’ + + SUMMARY: processing the following file failed: + ‘RGCCA.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘RGCCA.Rmd’ using rmarkdown + + tlmgr: Remote database at https://mirrors.mit.edu/CTAN/systems/texlive/tlnet + (revision 75249 of the texlive-scripts package) + seems to be older than the local installation + (revision 75260 of texlive-scripts); + please use a different mirror and/or wait a day or two. + + + ... + + Error: processing vignette 'RGCCA.Rmd' failed with diagnostics: + LaTeX failed to compile /tmp/workdir/RGCCA/old/RGCCA.Rcheck/vign_test/RGCCA/vignettes/RGCCA.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See RGCCA.log for more info. + --- failed re-building ‘RGCCA.Rmd’ + + SUMMARY: processing the following file failed: + ‘RGCCA.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# rhierbaps + +
+ +* Version: 1.1.4 +* GitHub: https://github.com/gtonkinhill/rhierbaps +* Source code: https://github.com/cran/rhierbaps +* Date/Publication: 2022-11-18 14:50:07 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "rhierbaps")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘introduction.Rmd’ using rmarkdown + Read 1 item + + Quitting from introduction.Rmd:105-110 [unnamed-chunk-8] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'introduction.Rmd' failed with diagnostics: + Can't add `layout_circular()` to a object. + --- failed re-building ‘introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ridgetorus + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/egarpor/ridgetorus +* Source code: https://github.com/cran/ridgetorus +* Date/Publication: 2023-08-27 22:40:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "ridgetorus")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ridgetorus-Ex.R’ failed + The error most likely occurred in: + + > ### Name: torus_pairs + > ### Title: Toroidal pairs plot + > ### Aliases: torus_pairs + > + > ### ** Examples + > + > # Generate data + ... + + sigma = diag(0.1, nrow = 2)), + + mvtnorm::rmvnorm(n = n, mean = c(0, pi / 2), + + sigma = diag(0.1, nrow = 2)) + + )) + > col <- rainbow(3)[rep(1:3, each = n)] + > + > # Torus pairs + > torus_pairs(x, col_data = col) + Error: C stack usage 9963892 is too close to the limit + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.1Mb + sub-directories of 1Mb or more: + libs 4.5Mb + ``` + +# rifreg + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/rifreg +* Date/Publication: 2024-05-01 18:42:07 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "rifreg")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(rifreg) + Loading required package: ggplot2 + > + > test_check("rifreg") + Bootstrapping Standard Errors... + + ... + `expected`: "gg" "ggplot" + ── Failure ('test-plot.R:190:3'): Generic plot method generates a plot for RIF of interquantile ratio ── + class(rifreg_plot) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 10 | WARN 3525 | SKIP 0 | PASS 66 ] + Error: Test failures + Execution halted + ``` + +# RItools + +
+ +* Version: 0.3-5 +* GitHub: NA +* Source code: https://github.com/cran/RItools +* Date/Publication: 2025-05-17 13:30:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "RItools")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(RItools) + Loading required package: ggplot2 + Loading required package: survival + > + > test_check("RItools") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1439 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test.plot.balancetest.R:18:3'): Uses ggplot ─────────────────────── + `btp` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1439 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘optmatch’ + ``` + +# rLakeHabitat + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/rLakeHabitat +* Date/Publication: 2025-04-15 19:30:02 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "rLakeHabitat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rLakeHabitat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: bathyMap + > ### Title: Plot Bathymetry Map + > ### Aliases: bathyMap + > + > ### ** Examples + > + > #load raster + ... + Error in `scale_backward_compatibility()`: + ! Unknown scale type: + Backtrace: + ▆ + 1. └─rLakeHabitat::bathyMap(DEM, contours = TRUE, units = "m", labels = TRUE) + 2. └─ggplot2::scale_fill_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. └─rLakeHabitat::bathyMap(dat, units = "m", plotTitle = "Lake Monona") + 5. └─ggplot2::scale_fill_continuous(...) + 6. └─ggplot2:::scale_backward_compatibility(...) + 7. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 8. └─rlang::abort(...) + + [ FAIL 2 | WARN 3 | SKIP 0 | PASS 211 ] + Error: Test failures + Execution halted + ``` + +# rmcorr + +
+ +* Version: 0.7.0 +* GitHub: https://github.com/lmarusich/rmcorr +* Source code: https://github.com/cran/rmcorr +* Date/Publication: 2024-07-26 23:10:05 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "rmcorr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘CI_fix.Rmd’ using rmarkdown + --- finished re-building ‘CI_fix.Rmd’ + + --- re-building ‘FAQ_and_limitations.Rmd’ using rmarkdown + --- finished re-building ‘FAQ_and_limitations.Rmd’ + + --- re-building ‘New_rmcorr_paper_analyses_figures.Rmd’ using rmarkdown + ``` + +# RMixtComp + +
+ +* Version: 4.1.4 +* GitHub: https://github.com/modal-inria/MixtComp +* Source code: https://github.com/cran/RMixtComp +* Date/Publication: 2023-06-18 22:50:13 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "RMixtComp")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RMixtComp-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.MixtCompLearn + > ### Title: Plot of a _MixtCompLearn_ object + > ### Aliases: plot.MixtCompLearn + > + > ### ** Examples + > + > data(iris) + ... + + $discrimPowerVar + + $proportion + + $Petal.Width + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +# RMixtCompUtilities + +
+ +* Version: 4.1.6 +* GitHub: https://github.com/modal-inria/MixtComp +* Source code: https://github.com/cran/RMixtCompUtilities +* Date/Publication: 2023-09-22 12:30:09 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "RMixtCompUtilities")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RMixtCompUtilities-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotDataBoxplot + > ### Title: Boxplot per class + > ### Aliases: plotDataBoxplot + > + > ### ** Examples + > + > if (requireNamespace("RMixtCompIO", quietly = TRUE)) { + ... + + plotDataBoxplot(resLearn, "var1") + + } + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the RMixtCompUtilities package. + Please report the issue at . + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) histMisclassif.Rd:22: Lost braces + 22 | err_i = 1 - max_{k={1,\ldots,K}} P(Z_i=k|x_i) + | ^ + checkRd: (-1) histMisclassif.Rd:22: Lost braces + 22 | err_i = 1 - max_{k={1,\ldots,K}} P(Z_i=k|x_i) + | ^ + ``` + +# rms + +
+ +* Version: 8.0-0 +* GitHub: https://github.com/harrelfe/rms +* Source code: https://github.com/cran/rms +* Date/Publication: 2025-04-04 15:50:02 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "rms")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rms-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggplot.Predict + > ### Title: Plot Effects of Variables Estimated by a Regression Model Fit + > ### Using ggplot2 + > ### Aliases: ggplot.Predict + > ### Keywords: models hplot htest + > + > ### ** Examples + ... + ! `mapping` must be created with `aes()`. + ✖ You've supplied a object. + Backtrace: + ▆ + 1. └─ggplot2::ggplot(p, cholesterol ~ blood.pressure) + 2. ├─S7::S7_dispatch() + 3. └─ggplot2 (local) `method(ggplot2, class_any)`(data = ``, mapping = ``, ..., environment = ``) + 4. └─cli::cli_abort(...) + 5. └─rlang::abort(...) + Execution halted + ``` + +* checking for code/documentation mismatches ... WARNING + ``` + Codoc mismatches from Rd file 'importexport.Rd': + ggplot + Code: function(data, mapping = aes(), ..., environment = + parent.frame()) + Docs: function(data = NULL, mapping = aes(), ..., environment = + parent.frame()) + Mismatches in argument default values: + Name: 'data' Code: Docs: NULL + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘rmsb’ + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘rmsb’ + ``` + +# rmweather + +
+ +* Version: 0.2.62 +* GitHub: https://github.com/skgrange/rmweather +* Source code: https://github.com/cran/rmweather +* Date/Publication: 2025-02-21 00:20:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "rmweather")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + + ... + ── Failure ('test_02_rmw_functions.R:83:3'): Test training function ──────────── + class(rmw_plot_importance(df_importance)) not identical to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test_02_rmw_functions.R:90:3'): Test training function ──────────── + class(plot_test) not identical to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 40 ] + Error: Test failures + Execution halted + ``` + +# RNAseqQC + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/frederikziebell/RNAseqQC +* Source code: https://github.com/cran/RNAseqQC +* Date/Publication: 2024-07-15 14:40:02 UTC +* Number of recursive dependencies: 160 + +Run `revdepcheck::cloud_details(, "RNAseqQC")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘data.Rmd’ using rmarkdown + --- finished re-building ‘data.Rmd’ + + --- re-building ‘introduction.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.0Mb + sub-directories of 1Mb or more: + data 4.5Mb + doc 2.3Mb + ``` + +# Rnest + +
+ +* Version: 1.1 +* GitHub: NA +* Source code: https://github.com/cran/Rnest +* Date/Publication: 2025-05-08 13:00:06 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "Rnest")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Rnest-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.nest + > ### Title: Plot results of Next Eigenvalues Sufficiency Test (NEST) + > ### Aliases: plot.nest + > + > ### ** Examples + > + > results <- nest(ex_2factors, n = 100, alpha = c(.01, .05, .01)) + > plot(results) + Error: Can't find property @i + Execution halted + ``` + +# roahd + +
+ +* Version: 1.4.3 +* GitHub: https://github.com/astamm/roahd +* Source code: https://github.com/cran/roahd +* Date/Publication: 2021-11-04 00:10:02 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "roahd")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘roahd-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.depthgram + > ### Title: Specialized method to plot 'depthgram' objects + > ### Aliases: plot.depthgram + > + > ### ** Examples + > + > N <- 50 + ... + + centerline = sin(2 * pi * grid), + + Cov = Cov + + ) + > names <- paste0("id_", 1:nrow(Data[[1]])) + > DG <- depthgram(Data, marginal_outliers = TRUE, ids = names) + > plot(DG) + Error in UseMethod("plotly_build") : + no applicable method for 'plotly_build' applied to an object of class "c('ggplot', 'ggplot2::ggplot', 'ggplot2::gg', 'S7_object')" + Calls: plot ... -> -> lapply -> FUN -> plotly_build + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.4Mb + sub-directories of 1Mb or more: + data 5.0Mb + doc 1.7Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) fData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fData.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fData.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) fData.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) mfData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) mfData.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) mfData.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) mfData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) mfData.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly + ... + checkRd: (-1) outliergram.Rd:49-51: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:52-54: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:55-58: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:59-62: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:63-65: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:66-69: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:70-71: Lost braces in \itemize; meant \describe ? + checkRd: (-1) outliergram.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) outliergram.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) outliergram.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# robCompositions + +
+ +* Version: 2.4.1 +* GitHub: NA +* Source code: https://github.com/cran/robCompositions +* Date/Publication: 2023-08-25 15:30:06 UTC +* Number of recursive dependencies: 140 + +Run `revdepcheck::cloud_details(, "robCompositions")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘robCompositions-Ex.R’ failed + The error most likely occurred in: + + > ### Name: biplot.pcaCoDa + > ### Title: Biplot method + > ### Aliases: biplot.pcaCoDa + > ### Keywords: aplot + > + > ### ** Examples + > + ... + > pc <- pcaCoDa(arcticLake, method="classical") + > plot(pc, xlabs=rownames(arcticLake), which = 2) + > plot(pc, xlabs=rownames(arcticLake), which = 3) + Warning: `aes_string()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the ggfortify package. + Please report the issue at . + Error: C stack usage 9965396 is too close to the limit + Execution halted + ``` + +* checking whether package ‘robCompositions’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘robCompositions’ + See ‘/tmp/workdir/robCompositions/new/robCompositions.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘imputation.Rnw’ using knitr + Error: processing vignette 'imputation.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'imputation.tex' failed. + LaTeX errors: + ! LaTeX Error: File `scrartcl.cls' not found. + + Type X to quit or to proceed, + or enter new name. (Default extension: cls) + + ... + l.3 \usepackage + [pdftex]{hyperref}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘robCompositions-overview.Rnw’ + + SUMMARY: processing the following files failed: + ‘imputation.Rnw’ ‘robCompositions-overview.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +* checking installed package size ... NOTE + ``` + installed size is 24.0Mb + sub-directories of 1Mb or more: + data 2.0Mb + libs 20.8Mb + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) GDPsatis.Rd:21: Lost braces in \itemize; meant \describe ? + checkRd: (-1) GDPsatis.Rd:22: Lost braces in \itemize; meant \describe ? + checkRd: (-1) GDPsatis.Rd:23: Lost braces in \itemize; meant \describe ? + checkRd: (-1) GDPsatis.Rd:24: Lost braces in \itemize; meant \describe ? + checkRd: (-1) GDPsatis.Rd:25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) GDPsatis.Rd:26: Lost braces in \itemize; meant \describe ? + checkRd: (-1) GDPsatis.Rd:27: Lost braces in \itemize; meant \describe ? + checkRd: (-1) GDPsatis.Rd:28: Lost braces in \itemize; meant \describe ? + checkRd: (-1) aDist.Rd:19: Lost braces + 19 | sets, or a distance matrix in case code{y} is not supplied. + ... + | ^ + checkRd: (-1) weightedPivotCoord.Rd:25: Lost braces; missing escapes or markup? + 25 | `cut = min(#r_{j}=>0/#r_{j}, #r_{j}<0/#r_{j}`, with Gaussian Kernel function and bandwidth `h=0.05`.} + | ^ + checkRd: (-1) weightedPivotCoord.Rd:25: Lost braces; missing escapes or markup? + 25 | `cut = min(#r_{j}=>0/#r_{j}, #r_{j}<0/#r_{j}`, with Gaussian Kernel function and bandwidth `h=0.05`.} + | ^ + checkRd: (-1) weightedPivotCoord.Rd:25: Lost braces; missing escapes or markup? + 25 | `cut = min(#r_{j}=>0/#r_{j}, #r_{j}<0/#r_{j}`, with Gaussian Kernel function and bandwidth `h=0.05`.} + | ^ + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1 marked UTF-8 string + ``` + +# robustmatrix + +
+ +* Version: 0.1.4 +* GitHub: NA +* Source code: https://github.com/cran/robustmatrix +* Date/Publication: 2025-05-14 15:40:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "robustmatrix")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘MMCD_examples.Rmd’ using rmarkdown + ``` + +# romic + +
+ +* Version: 1.1.3 +* GitHub: NA +* Source code: https://github.com/cran/romic +* Date/Publication: 2023-09-21 05:40:02 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "romic")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 3. │ │ └─base::withCallingHandlers(...) + 4. │ ├─plotly::ggplotly(heatmap_plot) %>% plotly::layout(margin = 0) + 5. │ ├─plotly::ggplotly(heatmap_plot) + 6. │ └─plotly:::ggplotly.ggplot(heatmap_plot) + 7. │ └─plotly::gg2list(...) + 8. └─plotly::layout(., margin = 0) + + [ FAIL 1 | WARN 0 | SKIP 7 | PASS 66 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) update_tidy_omic.Rd:16-17: Lost braces + 16 | in \code{updated_tidy_data} (names) and the table {features, samples, + | ^ + ``` + +# roptions + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/roptions +* Date/Publication: 2020-05-11 11:10:06 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "roptions")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘roptions-Ex.R’ failed + The error most likely occurred in: + + > ### Name: box.spread + > ### Title: Box Spread Strategy Function + > ### Aliases: box.spread + > + > ### ** Examples + > + > box.spread(100, 105, 95, 110, 3.2, 2.6, 1.1, 2.4) + ... + 35 5.7 + 36 5.7 + 37 5.7 + 38 5.7 + 39 5.7 + 40 5.7 + 41 5.7 + Error in pm[[2]] : subscript out of bounds + Calls: box.spread -> print -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# rPBK + +
+ +* Version: 0.2.4 +* GitHub: NA +* Source code: https://github.com/cran/rPBK +* Date/Publication: 2024-02-26 17:00:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "rPBK")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + `expected`: TRUE + ── Failure ('test-ppc.R:7:5'): ppc ───────────────────────────────────────────── + all(class(ppcPBK_C4) == c("gg", "ggplot")) is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 6 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking whether package ‘rPBK’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: namespace ‘colorspace’ is not available and has been replaced + See ‘/tmp/workdir/rPBK/new/rPBK.Rcheck/00install.out’ for details. + ``` + +* checking installed package size ... NOTE + ``` + installed size is 98.4Mb + sub-directories of 1Mb or more: + data 1.5Mb + libs 96.5Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘rstantools’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# RpeakChrom + +
+ +* Version: 1.1.0 +* GitHub: NA +* Source code: https://github.com/cran/RpeakChrom +* Date/Publication: 2017-04-21 18:02:34 UTC +* Number of recursive dependencies: 32 + +Run `revdepcheck::cloud_details(, "RpeakChrom")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RpeakChrom-Ex.R’ failed + The error most likely occurred in: + + > ### Name: vanDeemterAlternative + > ### Title: Characterization of chromatographic columns using a new + > ### aproximation to vanDeemter equations. + > ### Aliases: vanDeemterAlternative + > + > ### ** Examples + > + ... + 10. │ └─ggplot2 (local) labels(..., self = self) + 11. └─self$resolve_label(self$panel_scales_x[[1]], labels) + 12. └─ggplot2 (local) resolve_label(..., self = self) + 13. └─scale$make_title(prim_guide, prim_scale, prim_label) + 14. └─ggplot2 (local) make_title(..., self = self) + 15. └─ggplot2:::allow_lambda(scale_title) + 16. └─rlang::as_function(x) + 17. └─rlang:::abort_coercion(...) + 18. └─rlang::abort(msg, call = call) + Execution halted + ``` + +# rrr + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/chrisaddy/rrr +* Source code: https://github.com/cran/rrr +* Date/Publication: 2016-12-09 15:15:55 +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "rrr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rrr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: residuals + > ### Title: Reduced-Rank Regression Residuals + > ### Aliases: residuals + > + > ### ** Examples + > + > data(tobacco) + ... + 5 -0.124 1.64 -0.362 + 6 -0.0495 0.320 -1.24 + 7 -0.0419 2.08 -0.339 + 8 -0.145 2.75 -0.190 + 9 -0.0979 1.53 -0.588 + 10 -0.355 2.61 -0.333 + # ℹ 15 more rows + > residuals(tobacco_x, tobacco_y, rank = 1) + Error: C stack usage 9965716 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘rrr.Rmd’ using rmarkdown + + Quitting from rrr.Rmd:88-90 [unnamed-chunk-4] + Error: processing vignette 'rrr.Rmd' failed with diagnostics: + C stack usage 9964100 is too close to the limit + --- failed re-building ‘rrr.Rmd’ + + SUMMARY: processing the following file failed: + ‘rrr.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘Rcpp’ + All declared Imports should be used. + ``` + +# rrtable + +
+ +* Version: 0.3.0 +* GitHub: NA +* Source code: https://github.com/cran/rrtable +* Date/Publication: 2022-04-05 02:30:02 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "rrtable")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rrtable-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add_2plots + > ### Title: Add two plots into a document object + > ### Aliases: add_2plots + > + > ### ** Examples + > + > require(magrittr) + ... + Warning in strwidth(labels, "user") : + devEMF: your system substituted font family 'Nimbus Sans' when you requested 'Helvetica' + Warning in text.default(x, y, txt, cex = cex, font = font) : + devEMF: your system substituted font family 'Nimbus Sans' when you requested 'Helvetica' + Warning in graphics::mtext(sprintf("help(\"%s\")", nameEx()), side = 4, : + devEMF: your system substituted font family 'Nimbus Sans' when you requested 'Helvetica' + Error in body_add_gg(., value = gg, width = width, height = height) : + inherits(value, "gg") is not TRUE + Calls: %>% ... %>% -> add_anyplot -> %>% -> body_add_gg -> stopifnot + Execution halted + ``` + +# rSDI + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/ehengirmen/rSDI +* Source code: https://github.com/cran/rSDI +* Date/Publication: 2024-05-30 07:40:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "rSDI")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rSDI-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotSDI + > ### Title: plotSDI generates a plot of the network and SDI metrics on a + > ### geographic map. + > ### Aliases: plotSDI + > + > ### ** Examples + > + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─rSDI::plotSDI(TMSDI, variant = "vuw", circle.size.scale = 1) + 2. └─ggraph::geom_node_text(label = igraph::V(g)$label, size = 2) + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘rSDI.Rmd’ using rmarkdown + + Quitting from rSDI.Rmd:53-73 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'rSDI.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘rSDI.Rmd’ + + SUMMARY: processing the following file failed: + ‘rSDI.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# rsetse + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/JonnoB/rSETSe +* Source code: https://github.com/cran/rsetse +* Date/Publication: 2021-06-11 10:00:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "rsetse")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Categorical-and-continuous-features.Rmd’ using rmarkdown + + Quitting from Categorical-and-continuous-features.Rmd:30-35 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Categorical-and-continuous-features.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + ... + Error: processing vignette 'separate-peels-quintet.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘separate-peels-quintet.Rmd’ + + SUMMARY: processing the following files failed: + ‘Categorical-and-continuous-features.Rmd’ + ‘separate-peels-quintet.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# rstanemax + +
+ +* Version: 0.1.9 +* GitHub: https://github.com/yoshidk6/rstanemax +* Source code: https://github.com/cran/rstanemax +* Date/Publication: 2025-02-17 07:30:01 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "rstanemax")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(rstanemax) + Loading required package: Rcpp + > + > test_check("rstanemax") + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 137 ] + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-posterior_predict.R:131:3'): make sure at least plot() doesn't cause error ── + `g1` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-posterior_predict.R:132:3'): make sure at least plot() doesn't cause error ── + `g2` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 137 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 80.0Mb + sub-directories of 1Mb or more: + libs 79.2Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# RTIGER + +
+ +* Version: 2.1.0 +* GitHub: NA +* Source code: https://github.com/cran/RTIGER +* Date/Publication: 2023-03-29 09:20:02 UTC +* Number of recursive dependencies: 159 + +Run `revdepcheck::cloud_details(, "RTIGER")` for more info + +
+ +## Newly broken + +* checking whether package ‘RTIGER’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘RTIGER’ + See ‘/tmp/workdir/RTIGER/new/RTIGER.Rcheck/00install.out’ for details. + ``` + +# rTPC + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/padpadpadpad/rTPC +* Source code: https://github.com/cran/rTPC +* Date/Publication: 2023-08-17 06:40:06 UTC +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "rTPC")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘bootstrapping_many_curves.Rmd’ using rmarkdown + ``` + +# RtsEva + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/Alowis/RtsEva +* Source code: https://github.com/cran/RtsEva +* Date/Publication: 2024-06-24 12:30:01 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "RtsEva")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RtsEva-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tsEvaPlotSeriesTrendStdDevFromAnalyisObj + > ### Title: tsEvaPlotSeriesTrendStdDevFromAnalyisObj + > ### Aliases: tsEvaPlotSeriesTrendStdDevFromAnalyisObj + > + > ### ** Examples + > + > # Example usage of TsEvaNs function + ... + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the RtsEva package. + Please report the issue at . + Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the RtsEva package. + Please report the issue at . + Error: object properties are invalid: + - @colour must be , , or , not + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.9Mb + sub-directories of 1Mb or more: + data 7.0Mb + ``` + +# RVenn + +
+ +* Version: 1.1.0 +* GitHub: NA +* Source code: https://github.com/cran/RVenn +* Date/Publication: 2019-07-18 21:40:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "RVenn")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(RVenn) + > + > test_check("RVenn") + [ FAIL 4 | WARN 1 | SKIP 0 | PASS 31 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test_ggvenn.R:16:3'): ggvenn: slices ────────────────────────────── + class(ggvenn(v1, slice = c(2, 4))) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test_ggvenn.R:17:3'): ggvenn: slices ────────────────────────────── + class(ggvenn(v1, slice = c("A", "B", "C"))) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 4 | WARN 1 | SKIP 0 | PASS 31 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# rvinecopulib + +
+ +* Version: 0.7.2.1.0 +* GitHub: https://github.com/vinecopulib/rvinecopulib +* Source code: https://github.com/cran/rvinecopulib +* Date/Publication: 2025-03-24 16:30:02 UTC +* Number of recursive dependencies: 76 + +Run `revdepcheck::cloud_details(, "rvinecopulib")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘rvinecopulib-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.rvine_structure + > ### Title: Plotting R-vine structures + > ### Aliases: plot.rvine_structure plot.rvine_matrix + > + > ### ** Examples + > + > plot(cvine_structure(1:5)) + ... + ▆ + 1. ├─base::plot(cvine_structure(1:5)) + 2. └─rvinecopulib:::plot.rvine_structure(cvine_structure(1:5)) + 3. └─rvinecopulib:::plot.vinecop_dist(vinecop_dist(pcs, x), ...) + 4. └─ggraph::geom_edge_link(colour = "#000000") + 5. └─ggplot2::layer(...) + 6. └─ggplot2:::validate_mapping(mapping, call_env) + 7. └─cli::cli_abort(msg, call = call) + 8. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(rvinecopulib) + > + > + > test_check("rvinecopulib") + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 333 ] + + ... + 10. └─rvinecopulib:::plot.vinecop_dist(...) + 11. └─ggraph::geom_edge_link(...) + 12. └─ggplot2::layer(...) + 13. └─ggplot2:::validate_mapping(mapping, call_env) + 14. └─cli::cli_abort(msg, call = call) + 15. └─rlang::abort(...) + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 333 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 70.9Mb + sub-directories of 1Mb or more: + include 5.1Mb + libs 65.3Mb + ``` + +# RWmisc + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/jayrobwilliams/RWmisc +* Source code: https://github.com/cran/RWmisc +* Date/Publication: 2022-02-14 19:30:02 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "RWmisc")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(RWmisc) + > + > test_check("RWmisc") + Reading layer `nc' from data source + `/usr/local/lib/R/site-library/sf/shape/nc.shp' using driver `ESRI Shapefile' + Simple feature collection with 100 features and 14 fields + ... + `expected`: TRUE + ── Failure ('test-theme_rw.R:7:3'): blank theme works ────────────────────────── + inherits(p$theme$panel.border, "element_blank") is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 19 ] + Error: Test failures + Execution halted + ``` + +# Rwtss + +
+ +* Version: 0.9.2 +* GitHub: https://github.com/e-sensing/Rwtss +* Source code: https://github.com/cran/Rwtss +* Date/Publication: 2022-04-25 08:50:05 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "Rwtss")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(Rwtss) + Rwtss - R interface to Web Time Series Service. + Loaded Rwtss v0.9.2. + See ?Rwtss for help, citation("Rwtss") for use in publication. + See demo(package = "Rwtss") for examples. + ... + Backtrace: + ▆ + 1. ├─vcr::use_cassette(...) at test_wtss.R:53:5 + 2. │ └─cassette$call_block(...) + 3. └─testthat::expect_true(unname(summary(g)[1, 2]) == "gg") at test_wtss.R:60:9 + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 57 ] + Error: Test failures + Execution halted + Ran 14/14 deferred expressions + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) wtss_to_ts.Rd:31: Lost braces; missing escapes or markup? + 31 | This period can be either {"month", "week", "day"}, + | ^ + checkRd: (-1) wtss_to_ts.Rd:32: Lost braces; missing escapes or markup? + 32 | {"months", "weeks", "days"} or + | ^ + checkRd: (-1) wtss_to_ts.Rd:33: Lost braces; missing escapes or markup? + 33 | {12, 52, 365}. This function creates a new time series with the required + | ^ + ``` + +# rYWAASB + +
+ +* Version: 0.2 +* GitHub: https://github.com/abeyran/rYWAASB +* Source code: https://github.com/cran/rYWAASB +* Date/Publication: 2024-09-30 07:10:08 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "rYWAASB")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘rYWAASB_manual.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘lifecycle’ ‘mathjaxr’ + All declared Imports should be used. + ``` + +# saens + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/Alfrzlp/sae-ns +* Source code: https://github.com/cran/saens +* Date/Publication: 2024-11-18 04:40:03 UTC +* Number of recursive dependencies: 34 + +Run `revdepcheck::cloud_details(, "saens")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘saens-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot.eblupres + > ### Title: Autoplot EBLUP results. + > ### Aliases: autoplot.eblupres + > + > ### ** Examples + > + > library(saens) + ... + (Intercept) 3.1077510 0.7697687 4.0373 5.408e-05 *** + x1 -0.0019323 0.0098886 -0.1954 0.8451 + x2 0.0555184 0.0614129 0.9040 0.3660 + x3 0.0335344 0.0580013 0.5782 0.5632 + --- + Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 + > autoplot(m1) + Error: object properties are invalid: + - @face must be or , not + Execution halted + ``` + +# sageR + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/fbertran/sageR +* Source code: https://github.com/cran/sageR +* Date/Publication: 2023-03-23 18:40:02 UTC +* Number of recursive dependencies: 257 + +Run `revdepcheck::cloud_details(, "sageR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘sageR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: air_pollution + > ### Title: Air pollution data + > ### Aliases: air_pollution + > ### Keywords: datasets + > + > ### ** Examples + > + ... + $ NONPOOR: num 83.9 69.1 73.3 87.3 73.2 87.1 86.9 86.1 86.1 78.5 ... + $ GE65 : int 109 64 103 103 93 97 82 112 98 81 ... + $ LPOP : num 5.86 5.27 5.45 5.79 5.41 ... + $ l_pm2 : num 4.75 3.06 2.76 7.21 2.9 ... + $ l_pmax : num 5.41 4.82 6.11 5.53 5.39 ... + > library(ggplot2) + > library(GGally) + > GGally::ggpairs(air_pollution[,2:4],) + Error: C stack usage 9965684 is too close to the limit + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 120 marked UTF-8 strings + ``` + +# SAMprior + +
+ +* Version: 2.0.0 +* GitHub: NA +* Source code: https://github.com/cran/SAMprior +* Date/Publication: 2025-01-17 14:50:06 UTC +* Number of recursive dependencies: 136 + +Run `revdepcheck::cloud_details(, "SAMprior")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SAMprior-Ex.R’ failed + The error most likely occurred in: + + > ### Name: SAM_prior + > ### Title: Calculating SAM priors + > ### Aliases: SAM_prior SAM_prior.betaMix SAM_prior.gammaMix + > ### SAM_prior.normMix + > + > ### ** Examples + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# SangerTools + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/SangerTools +* Date/Publication: 2022-02-20 13:10:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "SangerTools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SangerTools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: categorical_col_chart + > ### Title: Plot Counts of Categorical Variables + > ### Aliases: categorical_col_chart + > + > ### ** Examples + > + > library(SangerTools) + ... + 8. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 9. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 10. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 11. │ └─base::withCallingHandlers(...) + 12. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 15. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘SangerTools_Vignette.Rmd’ using rmarkdown + + Quitting from SangerTools_Vignette.Rmd:118-140 [categorical_column_chart] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'SangerTools_Vignette.Rmd' failed with diagnostics: + ... + Can't merge the `plot.title` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + --- failed re-building ‘SangerTools_Vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘SangerTools_Vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# sapfluxnetr + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/sapfluxnet/sapfluxnetr +* Source code: https://github.com/cran/sapfluxnetr +* Date/Publication: 2023-01-25 15:30:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "sapfluxnetr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(sapfluxnetr) + > + > test_check("sapfluxnetr") + Starting 2 test processes + [ FAIL 28 | WARN 0 | SKIP 19 | PASS 334 ] + + ... + ── Failure ('test-visualizations.R:67:3'): sfn_plot returns the object correctly when multi ── + multi_plot_7[["ARG_TRE"]] inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-visualizations.R:68:3'): sfn_plot returns the object correctly when multi ── + multi_plot_7[["ARG_MAZ"]] inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-visualizations.R:69:3'): sfn_plot returns the object correctly when multi ── + multi_plot_7[["AUS_CAN_ST2_MIX"]] inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 28 | WARN 0 | SKIP 19 | PASS 334 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 4 marked UTF-8 strings + ``` + +# saros + +
+ +* Version: 1.5.1 +* GitHub: https://github.com/NIFU-NO/saros +* Source code: https://github.com/cran/saros +* Date/Publication: 2025-02-12 22:50:01 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "saros")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘saros-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fig_height_h_barchart2 + > ### Title: Estimate figure height for a horizontal bar chart + > ### Aliases: fig_height_h_barchart2 + > + > ### ** Examples + > + > fig_height_h_barchart2(makeme(data = ex_survey, dep = b_1:b_3, indep = x1_sex)) + ... + ℹ Did you misspell an argument name? + Warning in (function (mapping = NULL, data = NULL, position = "stack", ..., : + Ignoring unknown aesthetics: tooltip + Warning in (function (title = waiver(), theme = NULL, position = NULL, direction = NULL, : + Arguments in `...` must be used. + ✖ Problematic argument: + • data_id = "fill.guide" + ℹ Did you misspell an argument name? + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(saros) + > + > testthat::test_check("saros") + Starting 2 test processes + [ FAIL 1 | WARN 3 | SKIP 0 | PASS 211 ] + ... + 9. │ └─saros:::make_content.cat_plot_html(...) + 10. │ ├─base::`$<-`(`*tmp*`, "data", value = ``) + 11. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "data", value = ``) + 12. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 13. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 14. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 1 | WARN 3 | SKIP 0 | PASS 211 ] + Error: Test failures + Execution halted + ``` + +# scatterbar + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/JEFworks-Lab/scatterbar +* Source code: https://github.com/cran/scatterbar +* Date/Publication: 2024-11-25 11:50:02 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "scatterbar")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘customizing_scatterbar.Rmd’ using rmarkdown + ``` + +# scatterpie + +
+ +* Version: 0.2.4 +* GitHub: NA +* Source code: https://github.com/cran/scatterpie +* Date/Publication: 2024-08-28 17:20:02 UTC +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "scatterpie")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘scatterpie-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_scatterpie + > ### Title: geom_scatterpie + > ### Aliases: geom_scatterpie geom_scatterpie2 + > + > ### ** Examples + > + > library(ggplot2) + ... + 6. └─base_ops[[.Generic]](e1, e2) + 7. ├─S7::S7_dispatch() + 8. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘scatterpie.Rmd’ using rmarkdown + + Quitting from scatterpie.Rmd:51-54 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'scatterpie.Rmd' failed with diagnostics: + Can't add `geom_scatterpie(aes(x = long, y = lat, group = region), data + = d, ` and ` cols = LETTERS[1:4])` to a object. + --- failed re-building ‘scatterpie.Rmd’ + + SUMMARY: processing the following file failed: + ‘scatterpie.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# scCustomize + +
+ +* Version: 3.0.1 +* GitHub: https://github.com/samuel-marsh/scCustomize +* Source code: https://github.com/cran/scCustomize +* Date/Publication: 2024-12-18 18:40:02 UTC +* Number of recursive dependencies: 276 + +Run `revdepcheck::cloud_details(, "scCustomize")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘scCustomize-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Cell_Highlight_Plot + > ### Title: Meta Highlight Plot + > ### Aliases: Cell_Highlight_Plot + > + > ### ** Examples + > + > library(Seurat) + ... + 11. └─base_ops[[.Generic]](e1, e2) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. └─ggplot2::ggplot_add(object, p, objectname) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. └─rlang::abort(...) + Execution halted + ``` + +# scdtb + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/mightymetrika/scdtb +* Source code: https://github.com/cran/scdtb +* Date/Publication: 2024-09-20 16:30:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "scdtb")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + and different phase breaks ── + `rp` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-raw_plot.R:85:3'): raw_plot works on the efficacy_of_CBT example with 4 phases ── + `rp` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-raw_plot.R:109:3'): raw_plot works on the efficacy_of_CBT example with 4 phases and no participant ── + `rp` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 47 ] + Error: Test failures + Execution halted + ``` + +# scGate + +
+ +* Version: 1.7.0 +* GitHub: https://github.com/carmonalab/scGate +* Source code: https://github.com/cran/scGate +* Date/Publication: 2025-04-24 14:10:02 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "scGate")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘scGate-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_tree + > ### Title: Plot model tree + > ### Aliases: plot_tree + > + > ### ** Examples + > + > library(ggparty) + ... + Backtrace: + ▆ + 1. └─scGate::plot_tree(models$human$generic$Tcell) + 2. └─ggparty::ggparty(py) + 3. └─ggplot2::ggplot(data = plot_data, mapping = mapping) + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot2, class_any)`(data = ``, mapping = ``, ..., environment = ``) + 6. └─cli::cli_abort(...) + 7. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking whether package ‘scGate’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: namespace ‘colorspace’ is not available and has been replaced + See ‘/tmp/workdir/scGate/new/scGate.Rcheck/00install.out’ for details. + ``` + +# schtools + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/SchlossLab/schtools +* Source code: https://github.com/cran/schtools +* Date/Publication: 2023-08-21 14:50:06 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "schtools")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘introduction.Rmd’ using rmarkdown + + Quitting from introduction.Rmd:76-94 [italic-genus] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'introduction.Rmd' failed with diagnostics: + ... + Can't merge the `axis.text.y` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + --- failed re-building ‘introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# scico + +
+ +* Version: 1.5.0 +* GitHub: https://github.com/thomasp85/scico +* Source code: https://github.com/cran/scico +* Date/Publication: 2023-08-14 13:10:02 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "scico")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(scico) + > + > test_check("scico") + [ FAIL 8 | WARN 1 | SKIP 0 | PASS 6 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test_ggplot2_scales.R:63:3'): scale_fill_scico_d takes palette args ── + base_fill_plot + scale_fill_scico_d(palette = "oslo") inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test_ggplot2_scales.R:66:3'): scale_fill_scico_d takes palette args ── + base_fill_plot + ... inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test_ggplot2_scales.R:69:3'): scale_fill_scico_d takes palette args ── + base_fill_plot + scale_fill_scico_d(direction = -1) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 8 | WARN 1 | SKIP 0 | PASS 6 ] + Error: Test failures + Execution halted + ``` + +# SCIntRuler + +
+ +* Version: 0.99.6 +* GitHub: https://github.com/yuelyu21/SCIntRuler +* Source code: https://github.com/cran/SCIntRuler +* Date/Publication: 2024-07-12 15:20:08 UTC +* Number of recursive dependencies: 199 + +Run `revdepcheck::cloud_details(, "SCIntRuler")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘SCIntRuler.Rmd’ using rmarkdown + Performing log-normalization + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + Calculating gene variances + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + ... + + Error: processing vignette 'SCIntRuler.Rmd' failed with diagnostics: + Can't add `x[[i]]` to a object. + --- failed re-building ‘SCIntRuler.Rmd’ + + SUMMARY: processing the following file failed: + ‘SCIntRuler.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# scistreer + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/kharchenkolab/scistreer +* Source code: https://github.com/cran/scistreer +* Date/Publication: 2023-06-15 20:20:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "scistreer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘scistreer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_phylo_heatmap + > ### Title: Plot phylogeny and mutation heatmap + > ### Aliases: plot_phylo_heatmap + > + > ### ** Examples + > + > p = plot_phylo_heatmap(tree_small, P_small) + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘Rcpp’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# scoringutils + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/epiforecasts/scoringutils +* Source code: https://github.com/cran/scoringutils +* Date/Publication: 2025-03-03 18:10:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "scoringutils")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘scoringutils-Ex.R’ failed + The error most likely occurred in: + + > ### Name: get_pit_histogram.forecast_quantile + > ### Title: Probability integral transformation histogram + > ### Aliases: get_pit_histogram.forecast_quantile + > ### get_pit_histogram.forecast_sample get_pit_histogram + > ### get_pit_histogram.default + > ### Keywords: scoring + > + ... + > library("ggplot2") + > + > result <- get_pit_histogram(example_sample_continuous, by = "model") + > ggplot(result, aes(x = mid, y = density)) + + + geom_col() + + + facet_wrap(. ~ model) + + + labs(x = "Quantile", "Density") + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Deprecated-functions.Rmd’ using rmarkdown + --- finished re-building ‘Deprecated-functions.Rmd’ + + --- re-building ‘Deprecated-visualisations.Rmd’ using rmarkdown + ``` + +# SCOUTer + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/SCOUTer +* Date/Publication: 2020-06-30 09:30:03 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "SCOUTer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SCOUTer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ht2info + > ### Title: ht2info + > ### Aliases: ht2info + > + > ### ** Examples + > + > X <- as.matrix(X) + > pcamodel.ref <- pcamb_classic(X[1:40,], 2, 0.05, "cent") # PCA-MB with first 40 + > # observations + > pcaproj <- pcame(X[-c(1:40),], pcamodel.ref) # Project last observations + > ht2info(pcaproj$T2, pcaproj$T2matrix, pcamodel.ref$limt2, 2) # Information about + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘demoscouter.Rmd’ using rmarkdown + ``` + +# scplot + +
+ +* Version: 0.5.1 +* GitHub: NA +* Source code: https://github.com/cran/scplot +* Date/Publication: 2025-03-01 13:10:03 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "scplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘scplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add_legend + > ### Title: Add a legend to an scplot + > ### Aliases: add_legend + > + > ### ** Examples + > + > data(exampleAB_add, package = "scan") + > scplot(exampleAB_add) |> + + set_dataline("depression") |> + + add_statline("mean") |> + + add_legend() + Error in `ggplot2::element_line`() : + could not find function "ggplot2::element_line" + Calls: add_legend ... add_statline -> set_dataline -> .merge_element -> do.call + Execution halted + ``` + +* checking whether package ‘scplot’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + See ‘/tmp/workdir/scplot/new/scplot.Rcheck/00install.out’ for details. + ``` + +# SCpubr + +
+ +* Version: 2.0.2 +* GitHub: https://github.com/enblacar/SCpubr +* Source code: https://github.com/cran/SCpubr +* Date/Publication: 2023-10-11 09:50:02 UTC +* Number of recursive dependencies: 299 + +Run `revdepcheck::cloud_details(, "SCpubr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # nolint start + > library(testthat) + > library(SCpubr) + + + ── SCpubr 2.0.2 ──────────────────────────────────────────────────────────────── + + ... + 1. └─SCpubr::do_FeaturePlot(sample, features = "EPC1") at test-utils.R:775:5 + 2. └─Seurat::FeaturePlot(...) + 3. ├─base::suppressMessages(...) + 4. │ └─base::withCallingHandlers(...) + 5. ├─S7:::Ops.S7_object(...) + 6. └─base::NextMethod() + + [ FAIL 57 | WARN 16 | SKIP 391 | PASS 21 ] + Error: Test failures + Execution halted + ``` + +# scRNAstat + +
+ +* Version: 0.1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/scRNAstat +* Date/Publication: 2025-03-08 08:58:55 UTC +* Number of recursive dependencies: 155 + +Run `revdepcheck::cloud_details(, "scRNAstat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘scRNAstat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: basic_filter + > ### Title: basic_filter + > ### Aliases: basic_filter + > + > ### ** Examples + > + > basic_filter(AJ064_small_sce) + ... + 12. └─base_ops[[.Generic]](e1, e2) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 15. └─ggplot2:::add_ggplot(e1, e2, e2name) + 16. └─ggplot2::ggplot_add(object, p, objectname) + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking whether package ‘scRNAstat’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: namespace ‘colorspace’ is not available and has been replaced + See ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/00install.out’ for details. + ``` + +* checking installed package size ... NOTE + ``` + installed size is 8.1Mb + sub-directories of 1Mb or more: + data 8.0Mb + ``` + +# scrutiny + +
+ +* Version: 0.5.0 +* GitHub: https://github.com/lhdjung/scrutiny +* Source code: https://github.com/cran/scrutiny +* Date/Publication: 2024-09-22 08:10:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "scrutiny")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘scrutiny-Ex.R’ failed + The error most likely occurred in: + + > ### Name: debit_plot + > ### Title: Visualize DEBIT results + > ### Aliases: debit_plot + > + > ### ** Examples + > + > # Run `debit_plot()` on the output + > # of `debit_map()`: + > pigs3 %>% + + debit_map() %>% + + debit_plot() + Error: object properties are invalid: + - @colour must be , , or , not + - @arrow.fill must be , , or , not + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > + > + > library(testthat) + > library(scrutiny) + > + > test_check("scrutiny") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 523 ] + ... + 3. ├─ggplot2::theme(...) + 4. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL) + 5. │ └─base::mget(args, envir = env) + 6. └─ggplot2::element_line(seq(0, 0.5, 0.1)) + 7. └─S7::new_object(...) + 8. └─S7::validate(object, recursive = !parent_validated) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 523 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘consistency-tests-in-depth.Rmd’ using rmarkdown + --- finished re-building ‘consistency-tests-in-depth.Rmd’ + + --- re-building ‘consistency-tests-simple.Rmd’ using rmarkdown + --- finished re-building ‘consistency-tests-simple.Rmd’ + + --- re-building ‘debit.Rmd’ using rmarkdown + + Quitting from debit.Rmd:116-124 [unnamed-chunk-8] + ... + - @arrow.fill must be , , or , not + --- failed re-building ‘debit.Rmd’ + + --- re-building ‘devtools.Rmd’ using rmarkdown + --- finished re-building ‘devtools.Rmd’ + + --- re-building ‘duplicates.Rmd’ using rmarkdown + --- finished re-building ‘duplicates.Rmd’ + + --- re-building ‘grim.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘janitor’ + ``` + +# scUtils + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/scUtils +* Date/Publication: 2020-06-25 16:20:02 UTC +* Number of recursive dependencies: 49 + +Run `revdepcheck::cloud_details(, "scUtils")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(scUtils) + > + > test_check("scUtils") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plots.R:59:3'): all kinds of colnames are allowed ──────────── + p$labels not equal to list(y = "Dim2", x = "Dim1", colour = "expression"). + Attributes: < names for target but not for current > + Attributes: < Length mismatch: comparison on first 0 components > + Length mismatch: comparison on first 2 components + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# SCVA + +
+ +* Version: 1.3.1 +* GitHub: NA +* Source code: https://github.com/cran/SCVA +* Date/Publication: 2020-01-09 22:50:10 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "SCVA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SCVA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: graphly + > ### Title: Interactive plot of single-case data + > ### Aliases: graphly + > ### Keywords: Single-case design Graph + > + > ### ** Examples + > + > data(AB) + > graphly(design = "AB", data = AB) + Warning: `qplot()` was deprecated in ggplot2 3.4.0. + ℹ The deprecated feature was likely used in the SCVA package. + Please report the issue to the authors. + Error in pm[[2]] : subscript out of bounds + Calls: graphly -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# SDMtune + +
+ +* Version: 1.3.2 +* GitHub: https://github.com/ConsBiol-unibern/SDMtune +* Source code: https://github.com/cran/SDMtune +* Date/Publication: 2024-12-16 16:50:06 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "SDMtune")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(SDMtune) + + _____ ____ __ ___ __ + / ___/ / __ \ / |/ // /_ __ __ ____ ___ + \__ \ / / / // /|_/ // __// / / // __ \ / _ \ + ___/ // /_/ // / / // /_ / /_/ // / / // __/ + ... + 1. ├─SDMtune::plotPA(map, th = 0.8, filename = file) at test-plotPA.R:8:3 + 2. │ ├─base::`$<-`(`*tmp*`, "data", value = ``) + 3. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "data", value = ``) + 4. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 5. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 6. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 3 | WARN 0 | SKIP 55 | PASS 312 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.2Mb + sub-directories of 1Mb or more: + R 3.0Mb + libs 1.0Mb + ``` + +# seAMLess + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/eonurk/seAMLess +* Source code: https://github.com/cran/seAMLess +* Date/Publication: 2024-11-11 12:50:02 UTC +* Number of recursive dependencies: 50 + +Run `revdepcheck::cloud_details(, "seAMLess")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘seAMLess-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ternaryPlot + > ### Title: Given the immune compositions (ICs) of bulk-RNA samples, this + > ### function creates a ternary plot similar to ALOT tube from EuroFlow + > ### analysis and Figure 1E of our paper. + > ### Aliases: ternaryPlot + > + > ### ** Examples + ... + > + > library(seAMLess) + > + > data(minRes) + > ternaryPlot(minRes) + Error: .onLoad failed in loadNamespace() for 'ggtern', details: + call: NULL + error: object properties are invalid: + - @lineend must be or , not S3 + Execution halted + ``` + +# SeaVal + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/SeasonalForecastingEngine/SeaVal +* Source code: https://github.com/cran/SeaVal +* Date/Publication: 2024-06-14 15:20:05 UTC +* Number of recursive dependencies: 38 + +Run `revdepcheck::cloud_details(, "SeaVal")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SeaVal-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ROC_curve + > ### Title: ROC curve for tercile forecasts + > ### Aliases: ROC_curve + > + > ### ** Examples + > + > dt = data.table(below = c(0.5,0.3,0), + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 20.6Mb + sub-directories of 1Mb or more: + data 2.0Mb + extdata 18.0Mb + ``` + +# sedproxy + +
+ +* Version: 0.7.5 +* GitHub: https://github.com/EarthSystemDiagnostics/sedproxy +* Source code: https://github.com/cran/sedproxy +* Date/Publication: 2023-02-26 10:50:02 UTC +* Number of recursive dependencies: 69 + +Run `revdepcheck::cloud_details(, "sedproxy")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(sedproxy) + > + > test_check("sedproxy") + [ FAIL 1 | WARN 13 | SKIP 0 | PASS 36 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-ClimToProxyClim.R:332:3'): example from paper works ────────── + class(p) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 1 | WARN 13 | SKIP 0 | PASS 36 ] + Error: Test failures + Execution halted + ``` + +# see + +
+ +* Version: 0.11.0 +* GitHub: https://github.com/easystats/see +* Source code: https://github.com/cran/see +* Date/Publication: 2025-03-11 16:20:02 UTC +* Number of recursive dependencies: 246 + +Run `revdepcheck::cloud_details(, "see")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘see-Ex.R’ failed + The error most likely occurred in: + + > ### Name: geom_from_list + > ### Title: Create ggplot2 geom(s) from a list + > ### Aliases: geom_from_list geoms_from_list + > + > ### ** Examples + > + > ## Don't show: + ... + 4. └─ggplot2:::`print.ggplot2::ggplot`(yy$value) + 5. └─ggplot2::ggplot_build(x) + 6. ├─S7::S7_dispatch() + 7. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 8. └─ggplot2:::plot_theme(plot) + 9. └─ggside:::`+.gg`(default, theme) + 10. ├─ggside:::add_gg(e1 = e1, e2 = e2, e2name = e2name) + 11. └─ggside:::add_gg.default(e1 = e1, e2 = e2, e2name = e2name) + 12. └─rlang::abort(glue("No method defined for class {paste(class(e1),collapse = ', ')}.")) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # graphics engine changed in R 4.4, and so snapshots generated on + > # previous R version won't work + > if (getRversion() >= "4.4.0") { + + library(testthat) + + library(see) + + + + test_check("see") + ... + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + ── Failure ('test-plot.si.R:8:3'): `plot.see_si()` works ─────────────────────── + plot(result) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 28 | WARN 8 | SKIP 20 | PASS 10 ] + Error: Test failures + Execution halted + ``` + +# seedreg + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/seedreg +* Date/Publication: 2022-07-07 21:20:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "seedreg")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘seedreg-Ex.R’ failed + The error most likely occurred in: + + > ### Name: BC_model + > ### Title: Analysis: Logistic regression Brain-Cousens hormesis models + > ### Aliases: BC_model + > + > ### ** Examples + > + > library(seedreg) + ... + 29. └─vctrs::stop_incompatible_type(...) + 30. └─vctrs:::stop_incompatible(...) + 31. └─vctrs:::stop_vctrs(...) + 32. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Warning message: + Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the seedreg package. + Please report the issue to the authors. + Execution halted + ``` + +# SEI + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/noeliaof/SEI +* Source code: https://github.com/cran/SEI +* Date/Publication: 2024-08-27 11:20:46 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "SEI")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SEI-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_sei + > ### Title: Plot standardised indices + > ### Aliases: plot_sei + > + > ### ** Examples + > + > data(data_supply) + ... + 3. └─ggplot2::ggplot_build(x) + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 6. └─ggplot2:::plot_theme(plot) + 7. └─ggplot2:::check_theme(theme) + 8. └─base::mapply(...) + 9. └─ggplot2 (local) ``(...) + 10. └─cli::cli_abort(...) + 11. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘SEI_vignette.Rnw’ using knitr + + Quitting from SEI_vignette.Rnw:277-281 [std_index_ex_plot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'SEI_vignette.Rnw' failed with diagnostics: + The `plot.margin` theme element must be a vector of length 4 + --- failed re-building ‘SEI_vignette.Rnw’ + + SUMMARY: processing the following file failed: + ‘SEI_vignette.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘SEI_vignette.Rnw’ using knitr + Error: processing vignette 'SEI_vignette.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'SEI_vignette.tex' failed. + LaTeX errors: + ! LaTeX Error: File `thumbpdf.sty' not found. + + Type X to quit or to proceed, + or enter new name. (Default extension: sty) + ... + l.57 \usepackage + {amsfonts,amsmath,amssymb,amsthm}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘SEI_vignette.Rnw’ + + SUMMARY: processing the following file failed: + ‘SEI_vignette.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.3Mb + sub-directories of 1Mb or more: + data 6.5Mb + ``` + +# sensitivity + +
+ +* Version: 1.30.1 +* GitHub: NA +* Source code: https://github.com/cran/sensitivity +* Date/Publication: 2024-08-28 13:40:13 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "sensitivity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘sensitivity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: johnson + > ### Title: Johnson indices + > ### Aliases: johnson print.johnson plot.johnson ggplot.johnson + > ### Keywords: regression + > + > ### ** Examples + > + ... + 7. │ ├─base::tryCatch(...) + 8. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 9. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 10. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 11. │ └─base::withCallingHandlers(...) + 12. └─ggplot2:::validate_as_data_frame(model) + 13. └─ggplot2:::check_data_frame_like(data) + 14. └─cli::cli_abort("{.code dim(data)} must return an {.cls integer} of length 2.") + 15. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.2Mb + sub-directories of 1Mb or more: + R 3.5Mb + libs 5.1Mb + ``` + +# SensoMineR + +
+ +* Version: 1.27 +* GitHub: NA +* Source code: https://github.com/cran/SensoMineR +* Date/Publication: 2023-11-28 09:30:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "SensoMineR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SensoMineR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: averagetable + > ### Title: Computes a (products,descriptors) matrix + > ### Aliases: averagetable + > ### Keywords: models + > + > ### ** Examples + > + ... + > resaverage<-averagetable(sensochoc, formul = "~Product+Panelist", + + firstvar = 5) + > coltable(magicsort(resaverage), level.upper = 6,level.lower = 4, + + main.title = "Average by chocolate") + dev.new(): using pdf(file="Rplots4.pdf") + > + > res.pca = PCA(resaverage, scale.unit = TRUE) + Error: object properties are invalid: + - @face must be or , not + Execution halted + ``` + +# SentimentAnalysis + +
+ +* Version: 1.3-5 +* GitHub: https://github.com/sfeuerriegel/SentimentAnalysis +* Source code: https://github.com/cran/SentimentAnalysis +* Date/Publication: 2023-08-23 20:10:03 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "SentimentAnalysis")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(SentimentAnalysis) + + Attaching package: 'SentimentAnalysis' + + The following object is masked from 'package:base': + + ... + ── Failure ('test.plot.R:29:3'): plotting a scatterplot generates a ggplot object ── + `p` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test.plot.R:37:3'): plotting a weighted dictionary generates a ggplot object ── + `p` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test.plot.R:42:3'): plotting a weighted dictionary generates a ggplot object ── + `p` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 6 | WARN 1 | SKIP 0 | PASS 377 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) SentimentDictionaryWeighted.Rd:57: Lost braces + 57 | Pr{\"o}llochs and Feuerriegel (2018). Statistical inferences for + | ^ + checkRd: (-1) enetEstimation.Rd:21-23: Lost braces in \itemize; meant \describe ? + checkRd: (-1) enetEstimation.Rd:24-28: Lost braces in \itemize; meant \describe ? + checkRd: (-1) enetEstimation.Rd:29-31: Lost braces in \itemize; meant \describe ? + checkRd: (-1) enetEstimation.Rd:32: Lost braces in \itemize; meant \describe ? + checkRd: (-1) generateDictionary.Rd:113-117: Lost braces in \itemize; meant \describe ? + checkRd: (-1) generateDictionary.Rd:118-120: Lost braces in \itemize; meant \describe ? + checkRd: (-1) generateDictionary.Rd:121: Lost braces in \itemize; meant \describe ? + ... + checkRd: (-1) generateDictionary.Rd:277: Lost braces + 277 | Pr{\"o}llochs and Feuerriegel (2018). Statistical inferences for + | ^ + checkRd: (-1) glmEstimation.Rd:16-18: Lost braces in \itemize; meant \describe ? + checkRd: (-1) lassoEstimation.Rd:21-25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) lassoEstimation.Rd:26-28: Lost braces in \itemize; meant \describe ? + checkRd: (-1) lassoEstimation.Rd:29: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ridgeEstimation.Rd:21-25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ridgeEstimation.Rd:26-28: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ridgeEstimation.Rd:29: Lost braces in \itemize; meant \describe ? + ``` + +# sentopics + +
+ +* Version: 0.7.4 +* GitHub: https://github.com/odelmarcelle/sentopics +* Source code: https://github.com/cran/sentopics +* Date/Publication: 2024-09-20 12:20:02 UTC +* Number of recursive dependencies: 170 + +Run `revdepcheck::cloud_details(, "sentopics")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘sentopics-Ex.R’ failed + The error most likely occurred in: + + > ### Name: topWords + > ### Title: Extract the most representative words from topics + > ### Aliases: topWords plot_topWords + > + > ### ** Examples + > + > model <- LDA(ECB_press_conferences_tokens) + ... + 46: topic5 maturity 0.9578191 + 47: topic5 access 0.9553393 + 48: topic5 flow 0.9434862 + 49: topic5 lending 0.9414289 + 50: topic5 credit 0.9410788 + topic word value[FREX] + > plot_topWords(model) + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > + > library("testthat") + > library("sentopics") + > + > if (Sys.getenv("R_COVR") != "true") { + + test_check("sentopics") + + } else { + ... + 13. └─ggplot2 (local) `method(ggplot_build, ggplot2::ggplot)`(plot = ``) + 14. └─ggplot2:::setup_plot_labels(plot, layers, data) + 15. └─ggplot2::labs(!!!defaults(plot_labels, labels)) + 16. └─ggplot2::class_labels(args) + 17. └─S7::new_object(labels) + 18. └─S7::validate(object, recursive = !parent_validated) + + [ FAIL 3 | WARN 0 | SKIP 1 | PASS 327 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Basic_usage.Rmd’ using rmarkdown + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + + Quitting from Basic_usage.Rmd:86-92 [unnamed-chunk-7] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ... + 49. └─S7::new_object(labels) + 50. └─S7::validate(object, recursive = !parent_validated) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Basic_usage.Rmd' failed with diagnostics: + object is invalid: + - every label must be named. + --- failed re-building ‘Basic_usage.Rmd’ + + --- re-building ‘Topical_time_series.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.1Mb + sub-directories of 1Mb or more: + data 2.0Mb + libs 5.2Mb + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘lexicon’ + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 3128 marked UTF-8 strings + ``` + +# sephora + +
+ +* Version: 0.1.31 +* GitHub: NA +* Source code: https://github.com/cran/sephora +* Date/Publication: 2024-01-17 18:40:02 UTC +* Number of recursive dependencies: 138 + +Run `revdepcheck::cloud_details(, "sephora")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘sephora-Ex.R’ failed + The error most likely occurred in: + + > ### Name: phenopar + > ### Title: Phenological parameters estimation + > ### Aliases: phenopar + > + > ### ** Examples + > + > # --- Load dataset for testing + ... + > sephora_deciduous$phenoparams + GU SoS Mat Sen EoS Dor + 96 132 168 286 320 350 + > + > # --- testing plotting methods + > plot(x=sephora_deciduous, yLab="NDVI (no rescaled)") + > plot(x=sephora_deciduous, type="profiles", + + xLab="DoY", yLab="NDVI (no rescaled)") + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(out_aux)@data`? + Execution halted + ``` + +# seqHMM + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/helske/seqHMM +* Source code: https://github.com/cran/seqHMM +* Date/Publication: 2025-05-17 00:10:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "seqHMM")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘seqHMM-Ex.R’ failed + The error most likely occurred in: + + > ### Name: mc_to_sc_data + > ### Title: Merge Multiple Sequence Objects into One (from Multichannel to + > ### Single Channel Data) + > ### Aliases: mc_to_sc_data + > + > ### ** Examples + > + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(seqHMM) + Please cite seqHMM appropriately, see `citation('seqHMM')` for details. + > + > test_check("seqHMM") + [ FAIL 3 | WARN 0 | SKIP 2 | PASS 337 ] + + ... + 18. └─ggplot2:::add_ggplot(e1, e2, e2name) + 19. └─ggplot2::ggplot_add(object, p, objectname) + 20. ├─S7::S7_dispatch() + 21. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 22. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 23. └─rlang::abort(...) + + [ FAIL 3 | WARN 0 | SKIP 2 | PASS 337 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘seqHMM.Rnw’ using knitr + + Quitting from seqHMM.Rnw:417-429 [graphicalillustrations2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'seqHMM.Rnw' failed with diagnostics: + Can't add `x[[i]]` to a object. + ... + + Error: processing vignette 'seqHMM_visualization.Rnw' failed with diagnostics: + Can't add `p2` to a object. + --- failed re-building ‘seqHMM_visualization.Rnw’ + + SUMMARY: processing the following files failed: + ‘seqHMM.Rnw’ ‘seqHMM_algorithms.Rnw’ ‘seqHMM_visualization.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +* checking installed package size ... NOTE + ``` + installed size is 41.6Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 1.5Mb + libs 37.5Mb + ``` + +# SerolyzeR + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/mini-pw/SerolyzeR +* Source code: https://github.com/cran/SerolyzeR +* Date/Publication: 2025-05-06 08:20:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "SerolyzeR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SerolyzeR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: generate_levey_jennings_report + > ### Title: Generate a Levey-Jennings Report for Multiple Plates. + > ### Aliases: generate_levey_jennings_report + > + > ### ** Examples + > + > output_dir <- tempdir(check = TRUE) + ... + 42. └─ggplot2 (local) ``(...) + 43. └─cli::cli_abort(...) + 44. └─rlang::abort(...) + + Quitting from levey_jennings_report_template.Rmd:125-127 [plate-layout] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 10. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 11. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + ── Failure ('test-process-dir.R:129:3'): Test processing a directory with a single plate ── + Expected `capture.output(...)` to run without any errors. + ℹ Actually got a with text: + The `legend.margin` theme element must be a vector of length 4 + + [ FAIL 12 | WARN 27 | SKIP 0 | PASS 344 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘example_script.Rmd’ using rmarkdown + ``` + +# serosv + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/OUCRU-Modelling/serosv +* Source code: https://github.com/cran/serosv +* Date/Publication: 2025-04-09 04:30:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "serosv")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘serosv-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_gcv + > ### Title: Plotting GCV values with respect to different nn-s and h-s + > ### parameters. + > ### Aliases: plot_gcv + > + > ### ** Examples + > + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘data_transformation.Rmd’ using rmarkdown + --- finished re-building ‘data_transformation.Rmd’ + + --- re-building ‘hierarchical_model.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 101.5Mb + sub-directories of 1Mb or more: + doc 1.5Mb + help 1.4Mb + libs 98.2Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# SetMethods + +
+ +* Version: 4.1 +* GitHub: NA +* Source code: https://github.com/cran/SetMethods +* Date/Publication: 2025-03-21 14:50:02 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "SetMethods")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SetMethods-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pimplot + > ### Title: Prime implicants, truth table rows, and necessity plots. + > ### Aliases: pimplot + > ### Keywords: QCA + > + > ### ** Examples + > + ... + > # Plot the prime implicants of the parsimonious solution: + > + > pimplot(data = SCHF, results = sol_yp, outcome = "EXPORT") + > + > # Plot a two-by-two table: + > + > pimplot(data = SCHF, results = sol_yp, outcome = "EXPORT", crisp = TRUE) + Please note that using the argument crisp = TRUE, eventual fuzzy sets are turned into crisp set at the 0.5 anchor! + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@data`? + Execution halted + ``` + +# Seurat + +
+ +* Version: 5.3.0 +* GitHub: https://github.com/satijalab/seurat +* Source code: https://github.com/cran/Seurat +* Date/Publication: 2025-04-23 22:10:02 UTC +* Number of recursive dependencies: 279 + +Run `revdepcheck::cloud_details(, "Seurat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Seurat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: CombinePlots + > ### Title: Combine ggplot2-based plots into a single plot + > ### Aliases: CombinePlots + > + > ### ** Examples + > + > data("pbmc_small") + ... + + split.by = 'group' + + ) + Warning: The `slot` argument of `FetchData()` is deprecated as of SeuratObject 5.0.0. + ℹ Please use the `layer` argument instead. + ℹ The deprecated feature was likely used in the Seurat package. + Please report the issue at . + Error in `&.default`(plot, scale_color_gradientn(colors = cols, limits = c(min.feature.value, : + operations are possible only for numeric, logical or complex types + Calls: FeaturePlot ... suppressMessages -> withCallingHandlers -> Ops.S7_object -> NextMethod + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(Seurat) + Loading required package: SeuratObject + Loading required package: sp + + Attaching package: 'SeuratObject' + + ... + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + + [ FAIL 10 | WARN 1 | SKIP 26 | PASS 704 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 16.7Mb + sub-directories of 1Mb or more: + R 3.5Mb + help 1.5Mb + libs 11.4Mb + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘Signac’ + ``` + +# sffdr + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/ajbass/sffdr +* Source code: https://github.com/cran/sffdr +* Date/Publication: 2024-12-02 12:30:08 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "sffdr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘sffdr.Rmd’ using rmarkdown + + Quitting from sffdr.Rmd:90-101 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'sffdr.Rmd' failed with diagnostics: + Can't add `p2` to a object. + --- failed re-building ‘sffdr.Rmd’ + + SUMMARY: processing the following file failed: + ‘sffdr.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# sfnetworks + +
+ +* Version: 0.6.5 +* GitHub: https://github.com/luukvdmeer/sfnetworks +* Source code: https://github.com/cran/sfnetworks +* Date/Publication: 2024-12-06 15:40:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "sfnetworks")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(sfnetworks) + > + > test_check("sfnetworks") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 277 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_plot.R:12:3'): autplot returns a ggplot with two layers ────── + `g` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 277 ] + Error: Test failures + Execution halted + ``` + +# sglg + +
+ +* Version: 0.2.2 +* GitHub: NA +* Source code: https://github.com/cran/sglg +* Date/Publication: 2022-09-04 03:50:01 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "sglg")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘sglg-Ex.R’ failed + The error most likely occurred in: + + > ### Name: deviance_residuals + > ### Title: Deviance Residuals for a Generalized Log-gamma Regression Model + > ### Aliases: deviance_residuals + > + > ### ** Examples + > + > # Example 1 + > n <- 300 + > error <- rglg(n,0,1,1) + > y <- 0.5 + error + > fit <- glg(y~1,data=as.data.frame(y)) + > deviance_residuals(fit) + Error in pm[[2]] : subscript out of bounds + Calls: deviance_residuals ... dots2plots -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# sgsR + +
+ +* Version: 1.4.5 +* GitHub: https://github.com/tgoodbody/sgsR +* Source code: https://github.com/cran/sgsR +* Date/Publication: 2024-03-03 15:10:02 UTC +* Number of recursive dependencies: 120 + +Run `revdepcheck::cloud_details(, "sgsR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + `expected` is a character vector ('zq90') + ── Failure ('test-utils-plot.R:19:3'): scatter messages ──────────────────────── + o1$labels$x (`actual`) not equal to "pzabove2" (`expected`). + + `actual` is NULL + `expected` is a character vector ('pzabove2') + + [ FAIL 7 | WARN 112 | SKIP 19 | PASS 503 ] + Error: Test failures + Execution halted + ``` + +# shadowtext + +
+ +* Version: 0.1.4 +* GitHub: https://github.com/GuangchuangYu/shadowtext +* Source code: https://github.com/cran/shadowtext +* Date/Publication: 2024-07-18 07:00:01 UTC +* Number of recursive dependencies: 48 + +Run `revdepcheck::cloud_details(, "shadowtext")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘shadowtext.Rmd’ using rmarkdown + ``` + +# SHAPforxgboost + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/liuyanguu/SHAPforxgboost +* Source code: https://github.com/cran/SHAPforxgboost +* Date/Publication: 2023-05-29 17:20:07 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "SHAPforxgboost")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SHAPforxgboost-Ex.R’ failed + The error most likely occurred in: + + > ### Name: scatter.plot.diagonal + > ### Title: Make customized scatter plot with diagonal line and R2 printed. + > ### Aliases: scatter.plot.diagonal + > + > ### ** Examples + > + > scatter.plot.diagonal(data = iris, x = "Sepal.Length", y = "Petal.Length") + [1] "R2 is 0.76 ." + `geom_smooth()` using formula = 'y ~ x' + Error: Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘basic_workflow.Rmd’ using rmarkdown + + Quitting from basic_workflow.Rmd:62-87 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `as.vector()`: + ! cannot coerce type 'object' to vector of type 'character' + --- + Backtrace: + ... + + Error: processing vignette 'basic_workflow.Rmd' failed with diagnostics: + cannot coerce type 'object' to vector of type 'character' + --- failed re-building ‘basic_workflow.Rmd’ + + SUMMARY: processing the following file failed: + ‘basic_workflow.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ShapleyOutlier + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/ShapleyOutlier +* Date/Publication: 2024-10-17 12:00:34 UTC +* Number of recursive dependencies: 75 + +Run `revdepcheck::cloud_details(, "ShapleyOutlier")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ShapleyOutlier-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.shapley_interaction + > ### Title: Plot of Shapley interaction indices + > ### Aliases: plot.shapley_interaction + > + > ### ** Examples + > + > p <- 5 + ... + > mu <- rep(0,p) + > Sigma <- matrix(0.9, p, p); diag(Sigma) = 1 + > Sigma_inv <- solve(Sigma) + > x <- c(0,1,2,2.3,2.5) + > PHI <- shapley_interaction(x, mu, Sigma) + > plot(PHI) + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: plot ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ShapleyOutlier_examples.Rmd’ using rmarkdown + ``` + +# shapviz + +
+ +* Version: 0.9.7 +* GitHub: https://github.com/ModelOriented/shapviz +* Source code: https://github.com/cran/shapviz +* Date/Publication: 2025-01-19 19:20:02 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "shapviz")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘shapviz-Ex.R’ failed + The error most likely occurred in: + + > ### Name: sv_dependence + > ### Title: SHAP Dependence Plot + > ### Aliases: sv_dependence sv_dependence.default sv_dependence.shapviz + > ### sv_dependence.mshapviz + > + > ### ** Examples + > + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 16. └─ggplot2:::add_ggplot(e1, e2, e2name) + 17. └─ggplot2::ggplot_add(object, p, objectname) + 18. ├─S7::S7_dispatch() + 19. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 20. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 21. └─rlang::abort(...) + + [ FAIL 9 | WARN 0 | SKIP 0 | PASS 222 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘basic_use.Rmd’ using rmarkdown + + Quitting from basic_use.Rmd:61-87 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `as.vector()`: + ! cannot coerce type 'object' to vector of type 'character' + --- + Backtrace: + ... + --- failed re-building ‘multiple_output.Rmd’ + + --- re-building ‘tidymodels.Rmd’ using rmarkdown + --- finished re-building ‘tidymodels.Rmd’ + + SUMMARY: processing the following files failed: + ‘basic_use.Rmd’ ‘geographic.Rmd’ ‘multiple_output.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'fastshap', 'h2o', 'lightgbm' + ``` + +# shazam + +
+ +* Version: 1.2.0 +* GitHub: NA +* Source code: https://github.com/cran/shazam +* Date/Publication: 2023-10-02 18:50:02 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "shazam")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘shazam-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotMutability + > ### Title: Plot mutability probabilities + > ### Aliases: plotMutability + > + > ### ** Examples + > + > # Plot one nucleotide in circular style + > plotMutability(HH_S5F, "C") + Error: object properties are invalid: + - @margin must be or , not S3 + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown + --- finished re-building ‘Baseline-Vignette.Rmd’ + + --- re-building ‘DistToNearest-Vignette.Rmd’ using rmarkdown + --- finished re-building ‘DistToNearest-Vignette.Rmd’ + + --- re-building ‘Mutation-Vignette.Rmd’ using rmarkdown + --- finished re-building ‘Mutation-Vignette.Rmd’ + + ... + Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: + object properties are invalid: + - @margin must be or , not S3 + --- failed re-building ‘Targeting-Vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘Targeting-Vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# SHELF + +
+ +* Version: 1.12.0 +* GitHub: https://github.com/OakleyJ/SHELF +* Source code: https://github.com/cran/SHELF +* Date/Publication: 2025-03-01 16:50:03 UTC +* Number of recursive dependencies: 166 + +Run `revdepcheck::cloud_details(, "SHELF")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(SHELF) + > + > test_check("SHELF") + [ FAIL 1 | WARN 1 | SKIP 39 | PASS 0 ] + + ══ Skipped tests (39) ══════════════════════════════════════════════════════════ + ... + • plots/multiple-expert-plot.new.svg + • plots/multiple-expert-plot.svg + • plots/quartile-plot.svg + • plots/single-expert-histogram-plot.svg + • plots/single-expert-plot.svg + • plots/survival-extrapolations-plot.svg + • plots/survival-scenario-plot.svg + • plots/tertile-plot.svg + Error: Test failures + Execution halted + ``` + +# sherlock + +
+ +* Version: 0.7.0 +* GitHub: https://github.com/gaboraszabo/sherlock +* Source code: https://github.com/cran/sherlock +* Date/Publication: 2023-06-11 23:50:02 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "sherlock")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘sherlock-Ex.R’ failed + The error most likely occurred in: + + > ### Name: draw_categorical_scatterplot + > ### Title: Draw Categorical Scatter Plot + > ### Aliases: draw_categorical_scatterplot + > + > ### ** Examples + > + > multi_vari_data_2 %>% + ... + ! The `nest_line` argument must be or inherit from + . + Backtrace: + ▆ + 1. ├─multi_vari_data_2 %>% ... + 2. └─sherlock::draw_categorical_scatterplot(...) + 3. └─ggh4x::facet_nested(rows = ggplot2::vars(), cols = ggplot2::vars(!!grouping_var_2_expr)) + 4. └─cli::cli_abort("The {.arg nest_line} argument must be {.cls element_blank} or inherit \\\n from {.cls element_line}.") + 5. └─rlang::abort(...) + Execution halted + ``` + +# shinipsum + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/Thinkr-open/shinipsum +* Source code: https://github.com/cran/shinipsum +* Date/Publication: 2024-02-09 15:50:05 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "shinipsum")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(shinipsum) + > + > test_check("shinipsum") + [ FAIL 100 | WARN 1 | SKIP 0 | PASS 3052 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + `a` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + Backtrace: + ▆ + 1. └─base::lapply(...) at test-ggplot.R:3:3 + 2. └─shinipsum (local) FUN(X[[i]], ...) + 3. └─testthat::expect_is(a, "gg") at test-ggplot.R:6:7 + + [ FAIL 100 | WARN 1 | SKIP 0 | PASS 3052 ] + Error: Test failures + Execution halted + ``` + +# ShinyItemAnalysis + +
+ +* Version: 1.5.4 +* GitHub: https://github.com/patriciamar/ShinyItemAnalysis +* Source code: https://github.com/cran/ShinyItemAnalysis +* Date/Publication: 2025-02-08 10:30:02 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "ShinyItemAnalysis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ShinyItemAnalysis-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotDIFirt + > ### Title: Plot item characteristic curve of DIF IRT model + > ### Aliases: plotDIFirt + > + > ### ** Examples + > + > # loading libraries + ... + [[1]] + + > + > # Estimation of 2PL IRT model and Raju's statistic + > # by difR package + > fitRaju <- difRaju(GMAT2, group = 21, focal.name = 1, model = "2PL") + > # plot of item 1 and Lord's statistic + > plotDIFirt(fitRaju$itemParInit, test = "Raju", item = 1) + Error: Can't get S7 properties with `$`. Did you mean `gg1@data`? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.1Mb + sub-directories of 1Mb or more: + ShinyItemAnalysis 2.4Mb + data 2.0Mb + ``` + +# shinyMixR + +
+ +* Version: 0.5.0 +* GitHub: NA +* Source code: https://github.com/cran/shinyMixR +* Date/Publication: 2024-11-14 16:10:03 UTC +* Number of recursive dependencies: 200 + +Run `revdepcheck::cloud_details(, "shinyMixR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # see https://github.com/rstudio/shinytest2/issues/351 + > options(chromote.timeout = 120) + > + > library(testthat) + > library(shinyMixR) + Loading required package: shiny + Loading required package: ggplot2 + ... + 6. │ └─xpose::xplot_scatter(...) + 7. │ ├─base::`$<-`(`*tmp*`, "xpose", value = ``) + 8. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "xpose", value = ``) + 9. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 10. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 11. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 2 | WARN 0 | SKIP 11 | PASS 21 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘getting_started.Rmd’ using rmarkdown + + Quitting from getting_started.Rmd:234-237 [unnamed-chunk-18] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'getting_started.Rmd' failed with diagnostics: + Can't add `x[[i]]` to a object. + --- failed re-building ‘getting_started.Rmd’ + + SUMMARY: processing the following file failed: + ‘getting_started.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# shinyMobile + +
+ +* Version: 2.0.1 +* GitHub: https://github.com/RinteRface/shinyMobile +* Source code: https://github.com/cran/shinyMobile +* Date/Publication: 2024-10-04 17:30:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "shinyMobile")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘shinyMobile-Ex.R’ failed + The error most likely occurred in: + + > ### Name: f7SplitLayout + > ### Title: Framework7 split layout + > ### Aliases: f7SplitLayout + > + > ### ** Examples + > + > library(shiny) + ... + > fruits <- data.frame( + + name = c("Apples", "Oranges", "Bananas", "Berries"), + + value = c(44, 55, 67, 83) + + ) + > + > thematic_shiny(font = "auto") + Error in get(x, envir = ns, inherits = FALSE) : + object 'ggplot_build.ggplot' not found + Calls: thematic_shiny ... thematic_on -> ggplot_build_set -> getFromNamespace -> get + Execution halted + ``` + +# shoredate + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/isakro/shoredate +* Source code: https://github.com/cran/shoredate +* Date/Publication: 2023-10-24 16:10:03 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "shoredate")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘shoredate-Ex.R’ failed + The error most likely occurred in: + + > ### Name: shoredate_plot + > ### Title: Plot shoreline dates + > ### Aliases: shoredate_plot + > + > ### ** Examples + > + > # Create example point with correct coordinate reference system + ... + > target_point <- sf::st_sfc(sf::st_point(c(538310, 6544255)), crs = 32632) + > + > # Reduce date resolution with cal_reso and elevation_reso for speed + > target_date <- shoreline_date(sites = target_point, elevation = 80, + + elev_reso = 10, + + cal_reso = 500) + > + > shoredate_plot(target_date) + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(plt)@layout`? + Execution halted + ``` + +# sigminer + +
+ +* Version: 2.3.1 +* GitHub: https://github.com/ShixiangWang/sigminer +* Source code: https://github.com/cran/sigminer +* Date/Publication: 2024-05-11 08:50:02 UTC +* Number of recursive dependencies: 212 + +Run `revdepcheck::cloud_details(, "sigminer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘sigminer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: show_cn_distribution + > ### Title: Show Copy Number Distribution either by Length or Chromosome + > ### Aliases: show_cn_distribution + > + > ### ** Examples + > + > # Load copy number object + ... + > # Plot distribution + > p1 <- show_cn_distribution(cn) + > p1 + Warning: The dot-dot notation (`..density..`) was deprecated in ggplot2 3.4.0. + ℹ Please use `after_stat(density)` instead. + ℹ The deprecated feature was likely used in the sigminer package. + Please report the issue at . + > p2 <- show_cn_distribution(cn, mode = "cd") + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(p)@data`? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.4Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 2.0Mb + extdata 1.0Mb + help 1.7Mb + libs 1.3Mb + ``` + +# signatureSurvival + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/signatureSurvival +* Date/Publication: 2023-07-19 11:10:02 UTC +* Number of recursive dependencies: 102 + +Run `revdepcheck::cloud_details(, "signatureSurvival")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘signatureSurvival-Ex.R’ failed + The error most likely occurred in: + + > ### Name: MKMplot + > ### Title: Multivariate Kaplan-Meier survival curve plot + > ### Aliases: MKMplot + > ### Keywords: multivariate survival analysis + > + > ### ** Examples + > + ... + + adjx = 5) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggpubr package. + Please report the issue at . + Warning: Ignoring unknown labels: + • `fill = "Strata"` + • `linetype = "1"` + Error: Can't get S7 properties with `$`. Did you mean `g@data`? + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.2Mb + sub-directories of 1Mb or more: + data 7.5Mb + ``` + +# simaerep + +
+ +* Version: 0.7.0 +* GitHub: https://github.com/openpharma/simaerep +* Source code: https://github.com/cran/simaerep +* Date/Publication: 2025-04-09 09:40:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "simaerep")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(simaerep) + Loading required package: ggplot2 + > + > test_check("simaerep") + prepping for simulation + ... + `expected`: TRUE + + [ FAIL 4 | WARN 34 | SKIP 7 | PASS 164 ] + Deleting unused snapshots: + • validation/study-025.svg + • validation/study-050.svg + • validation/study-075.svg + • validation/study-100.svg + Error: Test failures + Execution halted + ``` + +# simmr + +
+ +* Version: 0.5.1.217 +* GitHub: https://github.com/andrewcparnell/simmr +* Source code: https://github.com/cran/simmr +* Date/Publication: 2024-10-16 15:10:02 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "simmr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘advanced_plotting.Rmd’ using rmarkdown + ``` + +# SimNPH + +
+ +* Version: 0.5.7 +* GitHub: https://github.com/SimNPH/SimNPH +* Source code: https://github.com/cran/SimNPH +* Date/Publication: 2025-04-08 10:30:02 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "SimNPH")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(SimNPH) + Loading required package: SimDesign + Loading required package: survival + > + > test_check("SimNPH") + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 381 ] + ... + 16. └─ggplot2:::add_ggplot(e1, e2, e2name) + 17. └─ggplot2::ggplot_add(object, p, objectname) + 18. ├─S7::S7_dispatch() + 19. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 20. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 21. └─rlang::abort(...) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 381 ] + Error: Test failures + Execution halted + ``` + +# simplecolors + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/rjake/simplecolors +* Source code: https://github.com/cran/simplecolors +* Date/Publication: 2023-08-31 04:40:07 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "simplecolors")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(simplecolors) + > + > test_check("simplecolors") + [ FAIL 4 | WARN 1 | SKIP 0 | PASS 21 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + y[1]: "gg" + ── Failure ('test-show_colors.R:5:3'): show_colors retuns gglot ──────────────── + is(x) not equal to "gg". + 1/1 mismatches + x[1]: "ggplot" + y[1]: "gg" + + [ FAIL 4 | WARN 1 | SKIP 0 | PASS 21 ] + Error: Test failures + Execution halted + ``` + +# SimplyAgree + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/arcaldwell49/SimplyAgree +* Source code: https://github.com/cran/SimplyAgree +* Date/Publication: 2025-02-24 16:40:11 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(SimplyAgree) + > + > test_check("SimplyAgree") + Limit of Agreement = 95% + Binomial proportions test and quantile regression for LoA + + ... + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + + [ FAIL 9 | WARN 5 | SKIP 0 | PASS 81 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Deming.Rmd’ using rmarkdown + ``` + +# singleCellHaystack + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/alexisvdb/singleCellHaystack +* Source code: https://github.com/cran/singleCellHaystack +* Date/Publication: 2024-01-11 10:00:05 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "singleCellHaystack")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘a01_toy_example.Rmd’ using rmarkdown + ``` + +# sivirep + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/epiverse-trace/sivirep +* Source code: https://github.com/cran/sivirep +* Date/Publication: 2024-12-03 23:10:02 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "sivirep")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ▆ + 1. └─sivirep::plot_map(data_agrupada = incidencia_mpio, ruta_dir = tempdir()) at test-map.R:165:3 + 2. └─ggplot2::scale_fill_continuous(...) + 3. └─ggplot2:::scale_backward_compatibility(...) + 4. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 5. └─rlang::abort(...) + + [ FAIL 6 | WARN 0 | SKIP 0 | PASS 345 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 8 marked UTF-8 strings + ``` + +# sjPlot + +
+ +* Version: 2.8.17 +* GitHub: https://github.com/strengejacke/sjPlot +* Source code: https://github.com/cran/sjPlot +* Date/Publication: 2024-11-29 11:20:03 UTC +* Number of recursive dependencies: 194 + +Run `revdepcheck::cloud_details(, "sjPlot")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘blackwhitefigures.Rmd’ using rmarkdown + ``` + +# SkeletalVis + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/soulj/SkeletalVis +* Source code: https://github.com/cran/SkeletalVis +* Date/Publication: 2025-05-06 08:30:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "SkeletalVis")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Error ('test-volcano_plot.R:75:3'): volcano_plot handles Inf and NA values in p-values ── + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(plot)@data`? + Backtrace: + ▆ + 1. ├─ggplot2::ggplot_build(plot)$data at test-volcano_plot.R:75:3 + 2. └─S7:::`$.S7_object`(ggplot2::ggplot_build(plot), data) at test-volcano_plot.R:75:3 + + [ FAIL 5 | WARN 0 | SKIP 0 | PASS 55 ] + Error: Test failures + Execution halted + ``` + +# skewlmm + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/fernandalschumacher/skewlmm +* Source code: https://github.com/cran/skewlmm +* Date/Publication: 2024-12-15 00:50:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "skewlmm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘skewlmm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot + > ### Title: Plot a smn.lmm or smsn.lmm object + > ### Aliases: plot.SMN plot.SMSN + > ### Keywords: hplot + > + > ### ** Examples + > + ... + ! Unknown scale type: + Backtrace: + ▆ + 1. ├─base::plot(fm1) + 2. └─skewlmm:::plot.SMN(fm1) + 3. └─ggplot2::scale_color_continuous(high = "#132B43", low = "#56B1F7") + 4. └─ggplot2:::scale_backward_compatibility(...) + 5. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 6. └─rlang::abort(...) + Execution halted + ``` + +# skipTrack + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/LukeDuttweiler/skipTrack +* Source code: https://github.com/cran/skipTrack +* Date/Publication: 2025-01-27 21:50:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "skipTrack")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘skipTrack-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.skipTrack.model + > ### Title: Plot skipTrack.model objects + > ### Aliases: plot.skipTrack.model + > + > ### ** Examples + > + > #Simulated data + ... + 20. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 21. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 22. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 23. │ └─base::withCallingHandlers(...) + 24. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 25. ├─S7::S7_dispatch() + 26. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(...) + 27. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 28. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ── Failure ('test-visualization.R:7:3'): skipTrack.visualize does not cause errors ── + Expected `skipTrack.visualize(foo)` to run without any errors. + i Actually got a with text: + Can't merge the `plot.title` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 14 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘skipTrack_intro.Rmd’ using rmarkdown + ``` + +# smallsets + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/lydialucchesi/smallsets +* Source code: https://github.com/cran/smallsets +* Date/Publication: 2023-12-05 00:00:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "smallsets")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘smallsets-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Smallset_Timeline + > ### Title: Smallset Timeline + > ### Aliases: Smallset_Timeline + > + > ### ** Examples + > + > set.seed(145) + > + > Smallset_Timeline( + + data = s_data, + + code = system.file("s_data_preprocess.R", package = "smallsets") + + ) + Error: Can't find property @hjust + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 10. │ └─ggplot2:::fix_theme_deprecations(elements) + 11. │ ├─base::`$<-`(`*tmp*`, "hjust", value = ``) + 12. │ └─ggplot2:::`$<-.ggplot2::element`(`*tmp*`, "hjust", value = ``) + 13. │ └─S7::`props<-`(`*tmp*`, value = `[[<-`(S7::props(x), i, value)) + 14. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 15. └─S7 (local) ``(...) + + [ FAIL 15 | WARN 0 | SKIP 0 | PASS 16 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘smallsets.Rmd’ using rmarkdown + + Quitting from smallsets.Rmd:35-42 [timeline1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @hjust + --- + Backtrace: + ... + + Error: processing vignette 'smallsets.Rmd' failed with diagnostics: + Can't find property @hjust + --- failed re-building ‘smallsets.Rmd’ + + SUMMARY: processing the following file failed: + ‘smallsets.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘gurobi’ + ``` + +# SmartEDA + +
+ +* Version: 0.3.10 +* GitHub: https://github.com/daya6489/SmartEDA +* Source code: https://github.com/cran/SmartEDA +* Date/Publication: 2024-01-30 17:50:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "SmartEDA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SmartEDA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ExpCatStat + > ### Title: Function provides summary statistics for all character or + > ### categorical columns in the dataframe + > ### Aliases: ExpCatStat + > + > ### ** Examples + > + ... + > # Information value plot + > ExpCatStat(mtcars,Target="am",result = "Stat",clim=10,nlim=10,bins=10, + + Pclass=1,plot=TRUE,top=20,Round=2) + Warning in FUN(X[[i]], ...) : NAs introduced by coercion + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the SmartEDA package. + Please report the issue at . + Error: C stack usage 9964068 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘CustomTable.Rmd’ using rmarkdown + --- finished re-building ‘CustomTable.Rmd’ + + --- re-building ‘SmartEDA.Rmd’ using rmarkdown + + Quitting from SmartEDA.Rmd:195-199 [c1.2 ] + Error: processing vignette 'SmartEDA.Rmd' failed with diagnostics: + C stack usage 9962084 is too close to the limit + ... + Quitting from SmartTwoPlots.Rmd:54-66 [c11 ] + Error: processing vignette 'SmartTwoPlots.Rmd' failed with diagnostics: + C stack usage 9961828 is too close to the limit + --- failed re-building ‘SmartTwoPlots.Rmd’ + + SUMMARY: processing the following files failed: + ‘SmartEDA.Rmd’ ‘SmartTwoPlots.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘qpdf’ + All declared Imports should be used. + ``` + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘ggthemes’, ‘DataExplorer’ + ``` + +# smdi + +
+ +* Version: 0.3.1 +* GitHub: NA +* Source code: https://github.com/cran/smdi +* Date/Publication: 2024-10-04 07:10:02 UTC +* Number of recursive dependencies: 220 + +Run `revdepcheck::cloud_details(, "smdi")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘a_data_generation.Rmd’ using rmarkdown + ``` + +# smer + +
+ +* Version: 0.0.1 +* GitHub: https://github.com/lcrawlab/sme +* Source code: https://github.com/cran/smer +* Date/Publication: 2025-01-16 15:50:01 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "smer")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘smer.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 45.7Mb + sub-directories of 1Mb or more: + libs 42.7Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# smoothic + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/meadhbh-oneill/smoothic +* Source code: https://github.com/cran/smoothic +* Date/Publication: 2023-08-22 14:40:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "smoothic")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘smoothic-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_effects + > ### Title: Plot conditional density curves + > ### Aliases: plot_effects + > + > ### ** Examples + > + > # Sniffer Data -------------------- + ... + > # MPR Model ---- + > results <- smoothic( + + formula = y ~ ., + + data = sniffer, + + family = "normal", + + model = "mpr" + + ) + > plot_effects(results) + Error: Can't find property @i + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘sgnd-boston.Rmd’ using rmarkdown + ``` + +# smplot2 + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/smin95/smplot2 +* Source code: https://github.com/cran/smplot2 +* Date/Publication: 2025-01-26 09:50:02 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "smplot2")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘smplot2-Ex.R’ failed + The error most likely occurred in: + + > ### Name: sm_add_legend + > ### Title: Adding a common legend on a combined figure + > ### Aliases: sm_add_legend + > + > ### ** Examples + > + > library(ggplot2) + ... + + sm_hvgrid(legends=FALSE) -> p2 + Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the smplot2 package. + Please report the issue at . + > + > combined_fig <- sm_put_together(list(p1,p2), ncol=2,nrow=1) + Error in all_plots[[iPlot]] : subscript out of bounds + Calls: sm_put_together ... unlist -> lapply -> FUN -> ggplot_build -> + Execution halted + ``` + +# soc.ca + +
+ +* Version: 0.8.0 +* GitHub: https://github.com/Rsoc/soc.ca +* Source code: https://github.com/cran/soc.ca +* Date/Publication: 2021-09-02 22:50:02 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "soc.ca")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘soc.ca-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add.to.label + > ### Title: Add values to label + > ### Aliases: add.to.label + > + > ### ** Examples + > + > example(soc.ca) + ... + [22] "Art:\n RenaissanceArt" "Art:\n StillLife" "Eat:\n Fish&Chips" + [25] "Eat:\n FrenchRest" "Eat:\n IndianRest" "Eat:\n ItalianRest" + [28] "Eat:\n Pub" "Eat:\n SteakHouse" + > map.ctr(result.label) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the soc.ca package. + Please report the issue to the authors. + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘FactoMineR’ ‘flextable’ ‘htmlTable’ ‘stringr’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) map.active.Rd:82: Lost braces + 82 | \link{guides}, \link{theme} and link{guide_legend} functions from the + | ^ + checkRd: (-1) map.add.Rd:99: Lost braces + 99 | \link{guides}, \link{theme} and link{guide_legend} functions from the + | ^ + checkRd: (-1) map.csa.mca.Rd:35: Lost braces + 35 | \link{soc.csa}, \link{map.csa.all}, link{map.csa.mca.array} + | ^ + checkRd: (-1) map.ctr.Rd:85: Lost braces + ... + | ^ + checkRd: (-1) map.ind.Rd:80: Lost braces + 80 | \link{guides}, \link{theme} and link{guide_legend} functions from the + | ^ + checkRd: (-1) map.mod.Rd:82: Lost braces + 82 | \link{guides}, \link{theme} and link{guide_legend} functions from the + | ^ + checkRd: (-1) map.sup.Rd:82: Lost braces + 82 | \link{guides}, \link{theme} and link{guide_legend} functions from the + | ^ + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 938 marked UTF-8 strings + ``` + +# SOMbrero + +
+ +* Version: 1.4-2 +* GitHub: https://github.com/tuxette/SOMbrero +* Source code: https://github.com/cran/SOMbrero +* Date/Publication: 2024-01-25 22:10:10 UTC +* Number of recursive dependencies: 113 + +Run `revdepcheck::cloud_details(, "SOMbrero")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library("testthat") + > library("SOMbrero") + Loading required package: igraph + + Attaching package: 'igraph' + + The following object is masked from 'package:testthat': + ... + ── Failure ('test-missing.R:58:3'): All 'add' plots are produced for inputs with missing entries ── + class(plot(nsom, what = "add", type = "barplot", variable = add4)) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test-missing.R:61:3'): All 'add' plots are produced for inputs with missing entries ── + class(plot(nsom, what = "add", type = "boxplot", variable = add4)) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 14 | WARN 0 | SKIP 0 | PASS 58 ] + Error: Test failures + Execution halted + ``` + +# spacejamr + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/dscolby/spacejamr +* Source code: https://github.com/cran/spacejamr +* Date/Publication: 2022-04-01 20:10:02 UTC +* Number of recursive dependencies: 134 + +Run `revdepcheck::cloud_details(, "spacejamr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘spacejamr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.NetSim + > ### Title: Plot a simulated network from a NetSim object + > ### Aliases: plot.NetSim + > + > ### ** Examples + > + > # Load spacejamr object + ... + Backtrace: + ▆ + 1. ├─base::plot(spl_points) + 2. └─spacejamr:::plot.NetSim(spl_points) + 3. └─ggraph::geom_edge_link(color = "blue") + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(spacejamr) + > + > test_check("spacejamr") + Density Mean Degree Mean Closeness Mean Betweenness Largest Component Size + pl 0 0 NaN 0 1 + apl 0 0 NaN 0 1 + ... + 5. └─spacejamr:::plot.NetSim(pl) + 6. └─ggraph::geom_edge_link(color = "blue") + 7. └─ggplot2::layer(...) + 8. └─ggplot2:::validate_mapping(mapping, call_env) + 9. └─cli::cli_abort(msg, call = call) + 10. └─rlang::abort(...) + + [ FAIL 3 | WARN 3 | SKIP 0 | PASS 20 ] + Error: Test failures + Execution halted + ``` + +# SPARRAfairness + +
+ +* Version: 0.1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/SPARRAfairness +* Date/Publication: 2025-04-09 12:40:02 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "SPARRAfairness")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘SPARRAfairness_example.Rmd’ using rmarkdown + + Quitting from SPARRAfairness_example.Rmd:198-212 [unnamed-chunk-14] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'SPARRAfairness_example.Rmd' failed with diagnostics: + Can't add `e2` to a object. + --- failed re-building ‘SPARRAfairness_example.Rmd’ + + SUMMARY: processing the following file failed: + ‘SPARRAfairness_example.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# SPARTAAS + +
+ +* Version: 1.2.4 +* GitHub: NA +* Source code: https://github.com/cran/SPARTAAS +* Date/Publication: 2024-06-27 14:50:10 UTC +* Number of recursive dependencies: 162 + +Run `revdepcheck::cloud_details(, "SPARTAAS")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SPARTAAS-Ex.R’ failed + The error most likely occurred in: + + > ### Name: CAdist + > ### Title: Distance matrix based on correspondence analysis results + > ### Aliases: CAdist + > + > ### ** Examples + > + > ##---- Should be DIRECTLY executable !! ---- + ... + > library(SPARTAAS) + > data(datangkor) + > + > ## contingency table + > cont <- datangkor$contingency + > + > distance <- CAdist(cont, nPC = "max") + Error: object properties are invalid: + - @face must be or , not + Execution halted + ``` + +# spatialwarnings + +
+ +* Version: 3.1.0 +* GitHub: https://github.com/spatial-ews/spatialwarnings +* Source code: https://github.com/cran/spatialwarnings +* Date/Publication: 2024-09-06 14:50:02 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "spatialwarnings")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > + > library(spatialwarnings) + Loading required package: future + This is spatialwarnings 3.1.0 + Use plan(multisession) to set up parallel processing + > if ( require("testthat") ) { + + test_check("spatialwarnings") + ... + { + ... + } is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 6 | WARN 2 | SKIP 2 | PASS 161 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.3Mb + sub-directories of 1Mb or more: + data 2.0Mb + libs 5.8Mb + ``` + +# SPECK + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/SPECK +* Date/Publication: 2023-11-17 17:30:02 UTC +* Number of recursive dependencies: 160 + +Run `revdepcheck::cloud_details(, "SPECK")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘SPECKVignette.Rmd’ using rmarkdown + Performing log-normalization + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + Calculating gene variances + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + ... + + Error: processing vignette 'SPECKVignette.Rmd' failed with diagnostics: + operations are possible only for numeric, logical or complex types + --- failed re-building ‘SPECKVignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘SPECKVignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# specr + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/masurp/specr +* Source code: https://github.com/cran/specr +* Date/Publication: 2023-01-20 13:50:02 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "specr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘specr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_decisiontree + > ### Title: Plot decision tree + > ### Aliases: plot_decisiontree + > + > ### ** Examples + > + > results <- run_specs(df = example_data, + ... + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─specr::plot_decisiontree(results) + 2. └─ggraph::geom_edge_diagonal() + 3. └─ggplot2::layer(...) + 4. └─ggplot2:::validate_mapping(mapping, call_env) + 5. └─cli::cli_abort(msg, call = call) + 6. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(specr) + + Attaching package: 'specr' + + The following object is masked from 'package:testthat': + + ... + ── Failure ('test-generics.R:34:3'): Function plot.specr.object with `type = 'choices'` creates a ggplot ── + `p` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-generics.R:41:3'): Function plot.specr.object with `type = 'choices'` creates a ggplot ── + `p` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test-generics.R:48:3'): Function plot.specr.object with `type = 'choices'` creates a ggplot ── + `p` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 6 | WARN 9 | SKIP 0 | PASS 20 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘custom-plot.rmd’ using rmarkdown + ``` + +# spect + +
+ +* Version: 1.0 +* GitHub: https://github.com/dawdawdo/spect +* Source code: https://github.com/cran/spect +* Date/Publication: 2025-04-08 09:00:02 UTC +* Number of recursive dependencies: 189 + +Run `revdepcheck::cloud_details(, "spect")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 20. └─ggplot2:::add_ggplot(e1, e2, e2name) + 21. └─ggplot2::ggplot_add(object, p, objectname) + 22. ├─S7::S7_dispatch() + 23. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 24. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 25. └─rlang::abort(...) + + [ FAIL 1 | WARN 73 | SKIP 0 | PASS 29 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘create_synthetic_data.Rmd’ using rmarkdown + ``` + +# spectralR + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/olehprylutskyi/spectralR +* Source code: https://github.com/cran/spectralR +* Date/Publication: 2023-08-24 09:20:02 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "spectralR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("spectralR") + + } + + test_get.pixel.data.R......... 1 tests OK 0.2s + + test_prepare.vector.data.R.... 1 tests OK + ... + test_prepare.vector.data.R.... 8 tests OK + test_prepare.vector.data.R.... 9 tests OK + test_prepare.vector.data.R.... 10 tests OK + test_prepare.vector.data.R.... 11 tests OK + test_prepare.vector.data.R.... 12 tests OK 83ms + + test_spectral.curves.plot.R... 1 tests OK Joining with `by = join_by(variable)` + Error in if (msg != "") { : the condition has length > 1 + Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun + Execution halted + ``` + +# SPIChanges + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/gabrielblain/SPIChanges +* Source code: https://github.com/cran/SPIChanges +* Date/Publication: 2025-02-05 18:10:08 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "SPIChanges")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘CaseStudies.Rmd’ using rmarkdown + + [0%] Downloaded 16763 bytes... + [0%] Downloaded 34171 bytes... + [1%] Downloaded 53309 bytes... + [2%] Downloaded 122941 bytes... + [3%] Downloaded 140349 bytes... + [5%] Downloaded 244797 bytes... + [6%] Downloaded 297021 bytes... + ... + [31%] Downloaded 1341501 bytes... + [59%] Downloaded 2550845 bytes... + [61%] Downloaded 2665533 bytes... + [62%] Downloaded 2681917 bytes... + [62%] Downloaded 2698301 bytes... + [63%] Downloaded 2714685 bytes... + [98%] Downloaded 4254781 bytes... + [99%] Downloaded 4271165 bytes... + [99%] Downloaded 4287549 bytes... + [100%] Downloaded 4302901 bytes... + ``` + +# spinifex + +
+ +* Version: 0.3.8 +* GitHub: https://github.com/nspyrison/spinifex +* Source code: https://github.com/cran/spinifex +* Date/Publication: 2025-01-08 22:10:02 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "spinifex")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘spinifex-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_pca_scree + > ### Title: Plot 2 components of Principal Component Analysis + > ### Aliases: plot_pca_scree + > + > ### ** Examples + > + > dat <- scale_sd(wine[, 2:6]) + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(spinifex) + Loading required package: tourr + -------------------------------------------------------- + spinifex --- version 0.3.8 + Please share bugs, suggestions, and feature requests at: + ... + 2. │ └─base::withCallingHandlers(...) + 3. └─spinifex::play_tour_path(tour_path = tpath, data = dat_std, angle = 1) + 4. └─spinifex (local) render_type(frames = tour_df, ...) + 5. ├─plotly::ggplotly(p = gg, tooltip = "tooltip") + 6. └─plotly:::ggplotly.ggplot(p = gg, tooltip = "tooltip") + 7. └─plotly::gg2list(...) + + [ FAIL 9 | WARN 0 | SKIP 0 | PASS 72 ] + Error: Test failures + Execution halted + ``` + +# splithalf + +
+ +* Version: 0.8.2 +* GitHub: https://github.com/sdparsons/splithalf +* Source code: https://github.com/cran/splithalf +* Date/Publication: 2022-08-11 14:30:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "splithalf")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘sim-validation.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) speedtestdata.Rd:18: Lost braces in \itemize; meant \describe ? + checkRd: (-1) speedtestdata.Rd:19: Lost braces in \itemize; meant \describe ? + checkRd: (-1) speedtestdata.Rd:20: Lost braces in \itemize; meant \describe ? + checkRd: (-1) speedtestdata.Rd:21: Lost braces in \itemize; meant \describe ? + checkRd: (-1) speedtestdata.Rd:22: Lost braces in \itemize; meant \describe ? + checkRd: (-1) speedtestdata.Rd:23: Lost braces in \itemize; meant \describe ? + ``` + +# spork + +
+ +* Version: 0.3.5 +* GitHub: NA +* Source code: https://github.com/cran/spork +* Date/Publication: 2024-10-12 02:30:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "spork")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘spork-Ex.R’ failed + The error most likely occurred in: + + > ### Name: as.png.plotmath + > ### Title: Convert Plotmath to PNG + > ### Aliases: as.png.plotmath + > ### Keywords: internal + > + > ### ** Examples + > + ... + 10. │ ├─base::tryCatch(...) + 11. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 12. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 13. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 14. │ └─base::withCallingHandlers(...) + 15. └─ggplot2:::validate_as_data_frame(model) + 16. └─ggplot2:::check_data_frame_like(data) + 17. └─cli::cli_abort("{.code dim(data)} must return an {.cls integer} of length 2.") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(spork) + > + > test_check("spork") + [ FAIL 2 | WARN 1 | SKIP 7 | PASS 82 ] + + ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ + ... + ! `dim(data)` must return an of length 2. + ── Error ('test-spork.R:429:3'): newline renders sensibly as plotmath ────────── + Error in `fortify(data, ...)`: `data` must be a , or an object coercible by `fortify()`, or + a valid -like object coercible by `as.data.frame()`. + Caused by error in `check_data_frame_like()`: + ! `dim(data)` must return an of length 2. + + [ FAIL 2 | WARN 1 | SKIP 7 | PASS 82 ] + Error: Test failures + Execution halted + ``` + +# sport + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/gogonzo/sport +* Source code: https://github.com/cran/sport +* Date/Publication: 2024-01-08 23:50:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "sport")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > + > test_check("sport") + Loading required package: sport + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 238 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_output.R:30:3'): Scale is labelled 'r' ─────────────────────── + p$labels$y not identical to "r". + target is NULL, current is character + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 238 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 7504 marked UTF-8 strings + ``` + +# sportyR + +
+ +* Version: 2.2.2 +* GitHub: https://github.com/sportsdataverse/sportyR +* Source code: https://github.com/cran/sportyR +* Date/Publication: 2024-02-15 10:10:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "sportyR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(sportyR) + > + > test_check("sportyR") + [ FAIL 56 | WARN 0 | SKIP 0 | PASS 73 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + `expected`: "gg" + ── Failure ('test-plots-and-features-volleyball.R:19:5'): geom_volleyball() can successfully transform coordinates ── + class(fivb_court)[2] (`actual`) not equal to "ggplot" (`expected`). + + `actual`: "ggplot2::ggplot" + `expected`: "ggplot" + + [ FAIL 56 | WARN 0 | SKIP 0 | PASS 73 ] + Error: Test failures + Execution halted + ``` + +# spotoroo + +
+ +* Version: 0.1.5 +* GitHub: https://github.com/TengMCing/spotoroo +* Source code: https://github.com/cran/spotoroo +* Date/Publication: 2024-11-19 03:20:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "spotoroo")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(spotoroo) + > + > test_check("spotoroo") + + -------------------------------- SPOTOROO 0.1.4 -------------------------------- + + ... + i Actually got a with text: + Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + ── Failure ('test-plot_spotoroo.R:64:3'): plot_spotoroo() works ──────────────── + Expected `plot_spotoroo(result, type = "timeline")` to run without any errors. + i Actually got a with text: + Can't get S7 properties with `$`. Did you mean `scatPbuilt@plot`? + + [ FAIL 2 | WARN 9 | SKIP 0 | PASS 63 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Clustering-hot-spots.Rmd’ using rmarkdown + ``` + +# SPUTNIK + +
+ +* Version: 1.4.2 +* GitHub: https://github.com/paoloinglese/SPUTNIK +* Source code: https://github.com/cran/SPUTNIK +* Date/Publication: 2024-04-16 14:30:05 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "SPUTNIK")` for more info + +
+ +## Newly broken + +* checking whether package ‘SPUTNIK’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘SPUTNIK’ + See ‘/tmp/workdir/SPUTNIK/new/SPUTNIK.Rcheck/00install.out’ for details. + ``` + +# SqueakR + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/osimon81/SqueakR +* Source code: https://github.com/cran/SqueakR +* Date/Publication: 2022-06-28 09:20:04 UTC +* Number of recursive dependencies: 147 + +Run `revdepcheck::cloud_details(, "SqueakR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘SqueakR.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.8Mb + sub-directories of 1Mb or more: + doc 8.2Mb + ``` + +# ssd4mosaic + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/ssd4mosaic +* Date/Publication: 2025-03-11 14:40:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "ssd4mosaic")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + 3. ├─ssd4mosaic::group_cdf_uncensored(data, p) + 4. │ ├─base::`$<-`(`*tmp*`, "layers", value = ``) + 5. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "layers", value = ``) + 6. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 7. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 8. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 3 | WARN 1 | SKIP 1 | PASS 65 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1 marked UTF-8 string + ``` + +# ssdtools + +
+ +* Version: 2.3.0 +* GitHub: https://github.com/bcgov/ssdtools +* Source code: https://github.com/cran/ssdtools +* Date/Publication: 2025-02-20 13:20:02 UTC +* Number of recursive dependencies: 126 + +Run `revdepcheck::cloud_details(, "ssdtools")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ssdtools-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot.fitdists + > ### Title: Plot a fitdists Object + > ### Aliases: autoplot.fitdists + > + > ### ** Examples + > + > fits <- ssd_fit_dists(ssddata::ccme_boron) + ... + 11. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 12. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 13. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 14. │ └─base::withCallingHandlers(...) + 15. └─ggplot2::merge_element(t2[[item]], t1[[item]]) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...) + 18. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.") + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘faqs.Rmd’ using rmarkdown + + Quitting from faqs.Rmd:26-31 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'faqs.Rmd' failed with diagnostics: + Can't merge the `axis.text.x` theme element. + ... + Can't merge the `axis.text.x` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + --- failed re-building ‘ssdtools.Rmd’ + + SUMMARY: processing the following files failed: + ‘faqs.Rmd’ ‘ssdtools.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 34.5Mb + sub-directories of 1Mb or more: + libs 33.2Mb + ``` + +# sssc + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/sssc +* Date/Publication: 2018-06-15 11:22:54 UTC +* Number of recursive dependencies: 32 + +Run `revdepcheck::cloud_details(, "sssc")` for more info + +
+ +## Newly broken + +* checking whether package ‘sssc’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘sssc’ + See ‘/tmp/workdir/sssc/new/sssc.Rcheck/00install.out’ for details. + ``` + +# stabm + +
+ +* Version: 1.2.2 +* GitHub: https://github.com/bommert/stabm +* Source code: https://github.com/cran/stabm +* Date/Publication: 2023-04-04 13:20:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "stabm")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(stabm) + > + > test_check("stabm") + [ FAIL 10 | WARN 3 | SKIP 0 | PASS 290 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test_plot_features.R:69:3'): only one feature + sim.mat ─────────── + Check on 'plotFeatures(list("V1", "V1"), sm2)' failed: Must inherit from class 'gg', but has classes 'ggplot','ggplot2::ggplot','ggplot2::gg','S7_object' + Backtrace: + ▆ + 1. └─checkmate::expect_class(...) at test_plot_features.R:69:3 + 2. └─checkmate::makeExpectation(x, res, info, label) + + [ FAIL 10 | WARN 3 | SKIP 0 | PASS 290 ] + Error: Test failures + Execution halted + ``` + +# starvz + +
+ +* Version: 0.8.2 +* GitHub: https://github.com/schnorr/starvz +* Source code: https://github.com/cran/starvz +* Date/Publication: 2024-09-08 19:00:02 UTC +* Number of recursive dependencies: 102 + +Run `revdepcheck::cloud_details(, "starvz")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(starvz) + > + > test_check("starvz") + [ FAIL 1 | WARN 0 | SKIP 1 | PASS 1 ] + + ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ + ... + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 1 | PASS 1 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.0Mb + sub-directories of 1Mb or more: + libs 3.9Mb + ``` + +# statebins + +
+ +* Version: 1.4.0 +* GitHub: NA +* Source code: https://github.com/cran/statebins +* Date/Publication: 2020-07-08 23:00:02 UTC +* Number of recursive dependencies: 42 + +Run `revdepcheck::cloud_details(, "statebins")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘statebins-Ex.R’ failed + The error most likely occurred in: + + > ### Name: statebins + > ### Title: Create a new ggplot-based "statebin" chart for USA + > ### states/territories + > ### Aliases: statebins + > + > ### ** Examples + > + ... + ℹ Please use tidy evaluation idioms with `aes()`. + ℹ See also `vignette("ggplot2-in-packages")` for more information. + ℹ The deprecated feature was likely used in the statebins package. + Please report the issue at . + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the statebins package. + Please report the issue at . + Error: Can't get S7 properties with `$`. Did you mean `gb@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("statebins") + + } + + test_statebins.R.............. 0 tests + test_statebins.R.............. 0 tests + ... + test_statebins.R.............. 0 tests + test_statebins.R.............. 0 tests + test_statebins.R.............. 0 tests + test_statebins.R.............. 0 tests + test_statebins.R.............. 0 tests + test_statebins.R.............. 0 tests + test_statebins.R.............. 0 tests + test_statebins.R.............. 0 tests + test_statebins.R.............. 0 tests Error: Can't get S7 properties with `$`. Did you mean `gb@plot`? + Execution halted + ``` + +# states + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/andybega/states +* Source code: https://github.com/cran/states +* Date/Publication: 2023-09-05 12:20:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "states")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library("testthat") + > library("states") + + Attaching package: 'states' + + The following object is masked from 'package:testthat': + + ... + ── Failure ('test-plot-missing.R:72:3'): plot_missing accepts all input options ── + plot_missing(...) has type 'object', not 'list'. + ── Failure ('test-plot-missing.R:77:3'): plot_missing accepts all input options ── + plot_missing(...) has type 'object', not 'list'. + ── Failure ('test-plot-missing.R:82:3'): plot_missing accepts all input options ── + plot_missing(...) has type 'object', not 'list'. + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 106 ] + Error: Test failures + Execution halted + ``` + +# statgenGWAS + +
+ +* Version: 1.0.11 +* GitHub: https://github.com/Biometris/statgenGWAS +* Source code: https://github.com/cran/statgenGWAS +* Date/Publication: 2025-03-31 13:30:06 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "statgenGWAS")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("statgenGWAS") + + } + + test_GWAS.R................... 0 tests + test_GWAS.R................... 0 tests + ... + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the statgenGWAS package. + Please report the issue at . + 2: In grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, : + for '← 2@3' in 'mbcsToSbcs': <- substituted for ← (U+2190) + 3: `aes_()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()` + ℹ The deprecated feature was likely used in the statgenGWAS package. + Please report the issue at . + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 15.2Mb + sub-directories of 1Mb or more: + data 7.0Mb + libs 7.2Mb + ``` + +# statgenGxE + +
+ +* Version: 1.0.9 +* GitHub: https://github.com/Biometris/statgenGxE +* Source code: https://github.com/cran/statgenGxE +* Date/Publication: 2024-09-18 07:10:03 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "statgenGxE")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘statgenGxE-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.megaEnv + > ### Title: Plot function for class megaEnv + > ### Aliases: plot.megaEnv + > + > ### ** Examples + > + > ## Compute mega environments for TDMaize. + ... + > geMegaEnv <- gxeMegaEnv(TD = TDMaize, trait = "yld") + > + > ## Create a scatter plot of predicted values. + > plot(geMegaEnv) + Warning in predict.megaEnv(x, engine = engine) : + One should be cautious with the interpretation of predictions for mega environments that are based on less than 10 trials. + + boundary (singular) fit: see help('isSingular') + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(hp)@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(statgenGxE) + > + > test_check("statgenGxE") + [ FAIL 10 | WARN 3 | SKIP 17 | PASS 432 ] + + ══ Skipped tests (17) ══════════════════════════════════════════════════════════ + ... + 9. └─statgenSTA:::plot.TD(...) + 10. └─statgenSTA:::scatterPlot(...) + 11. └─base::vapply(...) + 12. └─statgenSTA (local) FUN(X[[i]], ...) + 13. ├─ggplot2::ggplot_build(hp)$data + 14. └─S7:::`$.S7_object`(ggplot2::ggplot_build(hp), "data") + + [ FAIL 10 | WARN 3 | SKIP 17 | PASS 432 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘statgenGxE.Rmd’ using rmarkdown + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘asreml’ + ``` + +# statgenHTP + +
+ +* Version: 1.0.8 +* GitHub: https://github.com/Biometris/statgenHTP +* Source code: https://github.com/cran/statgenHTP +* Date/Publication: 2025-04-29 10:30:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "statgenHTP")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("statgenHTP") + + } + + test_TP.R..................... 0 tests + test_TP.R..................... 0 tests + ... + + test_TPPlots.R................ 0 tests + test_TPPlots.R................ 0 tests + test_TPPlots.R................ 1 tests OK + test_TPPlots.R................ 1 tests OK Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + In addition: Warning message: + 125 failed to parse. + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Overview_HTP.Rmd’ using rmarkdown + + Quitting from Overview_HTP.Rmd:104-109 [layoutPlot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `as.vector()`: + ! cannot coerce type 'object' to vector of type 'character' + --- + Backtrace: + ... + + Error: processing vignette 'Overview_HTP.Rmd' failed with diagnostics: + cannot coerce type 'object' to vector of type 'character' + --- failed re-building ‘Overview_HTP.Rmd’ + + SUMMARY: processing the following file failed: + ‘Overview_HTP.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘asreml’ + ``` + +* checking installed package size ... NOTE + ``` + installed size is 8.0Mb + sub-directories of 1Mb or more: + data 6.5Mb + ``` + +# statgenIBD + +
+ +* Version: 1.0.8 +* GitHub: https://github.com/Biometris/statgenIBD +* Source code: https://github.com/cran/statgenIBD +* Date/Publication: 2025-02-05 12:00:02 UTC +* Number of recursive dependencies: 59 + +Run `revdepcheck::cloud_details(, "statgenIBD")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("statgenIBD") + + } + + test_IBDprob.R................ 0 tests + test_IBDprob.R................ 0 tests + ... + test_IBDprob.R................ 6 tests OK + test_IBDprob.R................ 7 tests OK + test_IBDprob.R................ 8 tests OK + test_IBDprob.R................ 9 tests OK + test_IBDprob.R................ 9 tests OK + test_IBDprob.R................ 10 tests OK + test_IBDprob.R................ 11 tests OK + test_IBDprob.R................ 12 tests OK Error in if (msg != "") { : the condition has length > 1 + Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.7Mb + sub-directories of 1Mb or more: + extdata 2.4Mb + libs 6.4Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘statgenGWAS’ + All declared Imports should be used. + ``` + +# statgenSTA + +
+ +* Version: 1.0.14 +* GitHub: https://github.com/Biometris/statgenSTA +* Source code: https://github.com/cran/statgenSTA +* Date/Publication: 2024-10-14 07:40:02 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "statgenSTA")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘statgenSTA-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.STA + > ### Title: Plot function for class STA + > ### Aliases: plot.STA + > + > ### ** Examples + > + > ## Run a single trait analysis using SpATS. + ... + > plot(modSp, + + what = "fixed", + + plotType = "base") + > + > ## Create spatial plots. + > plot(modSp, + + what = "fixed", + + plotType = "spatial") + Error: Can't get S7 properties with `$`. Did you mean `ggplot2::ggplot_build(plots[[1]])@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(statgenSTA) + > + > test_check("statgenSTA") + [ FAIL 10 | WARN 0 | SKIP 6 | PASS 735 ] + + ══ Skipped tests (6) ═══════════════════════════════════════════════════════════ + ... + 2. └─statgenSTA:::plot.TD(...) + 3. └─statgenSTA:::scatterPlot(...) + 4. └─base::vapply(...) + 5. └─statgenSTA (local) FUN(X[[i]], ...) + 6. ├─ggplot2::ggplot_build(hp)$data + 7. └─S7:::`$.S7_object`(ggplot2::ggplot_build(hp), "data") + + [ FAIL 10 | WARN 0 | SKIP 6 | PASS 735 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘statgenSTA.Rmd’ using rmarkdown + + Quitting from statgenSTA.Rmd:194-197 [layoutPlot] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `as.vector()`: + ! cannot coerce type 'object' to vector of type 'character' + --- + Backtrace: + ... + + Error: processing vignette 'statgenSTA.Rmd' failed with diagnostics: + cannot coerce type 'object' to vector of type 'character' + --- failed re-building ‘statgenSTA.Rmd’ + + SUMMARY: processing the following file failed: + ‘statgenSTA.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘asreml’ + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘mapproj’ + All declared Imports should be used. + ``` + +# stats19 + +
+ +* Version: 3.3.1 +* GitHub: https://github.com/ropensci/stats19 +* Source code: https://github.com/cran/stats19 +* Date/Publication: 2025-01-15 08:00:02 UTC +* Number of recursive dependencies: 158 + +Run `revdepcheck::cloud_details(, "stats19")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘blog.Rmd’ using rmarkdown + [WARNING] Citeproc: citation sarkar_street_2018 not found + --- finished re-building ‘blog.Rmd’ + + --- re-building ‘stats19-training-setup.Rmd’ using rmarkdown + --- finished re-building ‘stats19-training-setup.Rmd’ + + --- re-building ‘stats19-training.Rmd’ using rmarkdown + ``` + +# statVisual + +
+ +* Version: 1.2.1 +* GitHub: NA +* Source code: https://github.com/cran/statVisual +* Date/Publication: 2020-02-20 19:30:02 UTC +* Number of recursive dependencies: 186 + +Run `revdepcheck::cloud_details(, "statVisual")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘statVisual-Ex.R’ failed + The error most likely occurred in: + + > ### Name: BiAxisErrBar + > ### Title: Compare Patterns of Two Outcomes in One Scatter Plot + > ### Aliases: BiAxisErrBar + > ### Keywords: method + > + > ### ** Examples + > + ... + + # Auto named with `tibble::lst()`: tibble::lst(mean, median) + + # Using lambdas list(~ mean(., trim = .2), ~ median(., na.rm = TRUE)) + ℹ The deprecated feature was likely used in the statVisual package. + Please report the issue to the authors. + Scale for linetype is already present. + Adding another scale for linetype, which will replace the existing scale. + Error: C stack usage 9964196 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘statVisual.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘gbm’ ‘ggfortify’ ‘tibble’ ‘tidyverse’ + All declared Imports should be used. + ``` + +# StratifiedMedicine + +
+ +* Version: 1.0.5 +* GitHub: https://github.com/thomasjemielita/StratifiedMedicine +* Source code: https://github.com/cran/StratifiedMedicine +* Date/Publication: 2022-03-29 23:00:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "StratifiedMedicine")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘SM_PRISM.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + doc 5.0Mb + ``` + +# STraTUS + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/mdhall272/STraTUS +* Source code: https://github.com/cran/STraTUS +* Date/Publication: 2020-04-04 12:20:06 UTC +* Number of recursive dependencies: 55 + +Run `revdepcheck::cloud_details(, "STraTUS")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘STraTUS-Ex.R’ failed + The error most likely occurred in: + + > ### Name: build.edgelist + > ### Title: For a sample, produce the transmission tree as a 'igraph' object + > ### Aliases: build.edgelist + > + > ### ** Examples + > + > generator <- tt.generator(stratus.example.tree) + ... + 11. └─base_ops[[.Generic]](e1, e2) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. └─ggplot2::ggplot_add(object, p, objectname) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) sample.partial.tt.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) sample.partial.tt.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) sample.partial.tt.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) sample.partial.tt.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) sample.partial.tt.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) sample.tt.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) sample.tt.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) sample.tt.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) sample.tt.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) sample.tt.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly + ... + checkRd: (-1) tt.generator.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) tt.generator.Rd:43-57: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) tt.generator.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) tt.generator.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) tt.generator.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) tt.generator.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) tt.generator.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) tt.generator.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) tt.generator.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) tt.generator.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# stRoke + +
+ +* Version: 24.10.1 +* GitHub: https://github.com/agdamsbo/stRoke +* Source code: https://github.com/cran/stRoke +* Date/Publication: 2024-10-25 06:50:01 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "stRoke")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ── Failure ('test-index_plot.R:2:3'): index_plot() works! ────────────────────── + index_plot(stRoke::score[score$event == "A", ]) has type 'object', not 'list'. + ── Failure ('test-index_plot.R:5:3'): index_plot() works! ────────────────────── + index_plot(stRoke::score[score$event == "A", ], sub_plot = "_per") has type 'object', not 'list'. + ── Failure ('test-index_plot.R:17:3'): index_plot() works! ───────────────────── + index_plot(stRoke::score, sub_plot = "_per", facet.by = "event") has type 'object', not 'list'. + + [ FAIL 5 | WARN 2 | SKIP 0 | PASS 45 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 705 marked UTF-8 strings + ``` + +# subincomeR + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/pablogguz/subincomeR +* Source code: https://github.com/cran/subincomeR +* Date/Publication: 2025-02-16 14:30:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "subincomeR")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘regional-convergence.Rmd’ using rmarkdown + + Quitting from regional-convergence.Rmd:91-176 [unnamed-chunk-4] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'regional-convergence.Rmd' failed with diagnostics: + ... + Can't merge the `plot.caption` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + --- failed re-building ‘regional-convergence.Rmd’ + + SUMMARY: processing the following file failed: + ‘regional-convergence.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# suddengains + +
+ +* Version: 0.7.2 +* GitHub: https://github.com/milanwiedemann/suddengains +* Source code: https://github.com/cran/suddengains +* Date/Publication: 2023-02-28 08:30:02 UTC +* Number of recursive dependencies: 92 + +Run `revdepcheck::cloud_details(, "suddengains")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘suddengains-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_sg_intervals + > ### Title: Plot summary of available data per time point and analysed + > ### session to session intervals + > ### Aliases: plot_sg_intervals + > + > ### ** Examples + > + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘shinygains.Rmd’ using rmarkdown + --- finished re-building ‘shinygains.Rmd’ + + --- re-building ‘suddengains-tutorial.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘cli’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) count_intervals.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) count_intervals.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) count_intervals.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) count_intervals.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) describe_sg.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) describe_sg.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) describe_sg.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) describe_sg.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) describe_sg.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) describe_sg.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly + ... + checkRd: (-1) sgdata_bad.Rd:31: Lost braces in \itemize; meant \describe ? + checkRd: (-1) sgdata_bad.Rd:32: Lost braces in \itemize; meant \describe ? + checkRd: (-1) sgdata_bad.Rd:33: Lost braces in \itemize; meant \describe ? + checkRd: (-1) sgdata_bad.Rd:34: Lost braces in \itemize; meant \describe ? + checkRd: (-1) sgdata_bad.Rd:35: Lost braces in \itemize; meant \describe ? + checkRd: (-1) sgdata_bad.Rd:36: Lost braces in \itemize; meant \describe ? + checkRd: (-1) sgdata_bad.Rd:37: Lost braces in \itemize; meant \describe ? + checkRd: (-1) sgdata_bad.Rd:38: Lost braces in \itemize; meant \describe ? + checkRd: (-1) sgdata_bad.Rd:39: Lost braces in \itemize; meant \describe ? + checkRd: (-1) sgdata_bad.Rd:40: Lost braces in \itemize; meant \describe ? + ``` + +# SuperCell + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/GfellerLab/SuperCell +* Source code: https://github.com/cran/SuperCell +* Date/Publication: 2024-10-25 11:30:02 UTC +* Number of recursive dependencies: 253 + +Run `revdepcheck::cloud_details(, "SuperCell")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘a_SuperCell.Rmd’ using rmarkdown + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘velocyto.R’ + ``` + +# Superpower + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/arcaldwell49/Superpower +* Source code: https://github.com/cran/Superpower +* Date/Publication: 2025-05-15 07:20:02 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "Superpower")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(Superpower) + > + > + > test_check("Superpower") + [1] "condition_one" "sad_1" + ... + y[1]: "gg" + ── Failure ('test-morey.R:109:3'): No error messages ftest ───────────────────── + class(test)[1] not equal to "gg". + 1/1 mismatches + x[1]: "ggplot" + y[1]: "gg" + + [ FAIL 2 | WARN 18 | SKIP 13 | PASS 398 ] + Error: Test failures + Execution halted + ``` + +# superspreading + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/epiverse-trace/superspreading +* Source code: https://github.com/cran/superspreading +* Date/Publication: 2025-01-27 18:40:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "superspreading")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘design-principles.Rmd’ using rmarkdown + --- finished re-building ‘design-principles.Rmd’ + + --- re-building ‘epidemic_risk.Rmd’ using rmarkdown + ``` + +# surveyexplorer + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/surveyexplorer +* Date/Publication: 2024-06-07 09:50:02 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "surveyexplorer")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + 1. ├─testthat::expect_false(identical(as.list(x), as.list(y))) at test-singlechoice.R:92:3 + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. ├─base::identical(as.list(x), as.list(y)) + 5. ├─base::as.list(x) + 6. └─base::as.list.default(x) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 67 ] + Error: Test failures + Execution halted + ``` + +# survHE + +
+ +* Version: 2.0.4 +* GitHub: https://github.com/giabaio/survHE +* Source code: https://github.com/cran/survHE +* Date/Publication: 2025-05-15 08:20:02 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "survHE")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ── Failure ('test-make.surv.R:20:3'): output plots don't throw an error and return ggplot2 list ── + psa.plot(p.mle3) has type 'object', not 'list'. + ── Failure ('test-make.surv.R:22:3'): output plots don't throw an error and return ggplot2 list ── + plot(mle, add.km = TRUE) has type 'object', not 'list'. + ── Failure ('test-make.surv.R:23:3'): output plots don't throw an error and return ggplot2 list ── + plot(mle, add.km = TRUE, sim = 10) has type 'object', not 'list'. + + [ FAIL 7 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# survivalAnalysis + +
+ +* Version: 0.4.0 +* GitHub: NA +* Source code: https://github.com/cran/survivalAnalysis +* Date/Publication: 2025-05-13 14:30:02 UTC +* Number of recursive dependencies: 156 + +Run `revdepcheck::cloud_details(, "survivalAnalysis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘survivalAnalysis-Ex.R’ failed + The error most likely occurred in: + + > ### Name: kaplan_meier_plot + > ### Title: Kaplan Meier plots from survival results. + > ### Aliases: kaplan_meier_plot + > + > ### ** Examples + > + > library(magrittr) + ... + + ggtheme=ggplot2::theme_bw(10)) + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the ggpubr package. + Please report the issue at . + Warning: Ignoring unknown labels: + • `fill = ""` + • `linetype = "1"` + Error: Can't get S7 properties with `$`. Did you mean `g@data`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘multivariate.Rmd’ using rmarkdown + ``` + +# survParamSim + +
+ +* Version: 0.1.7 +* GitHub: https://github.com/yoshidk6/survParamSim +* Source code: https://github.com/cran/survParamSim +* Date/Publication: 2025-05-02 19:30:02 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "survParamSim")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘survParamSim.Rmd’ using rmarkdown + + Quitting from survParamSim.Rmd:52-58 [plot_raw_data] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'survParamSim.Rmd' failed with diagnostics: + Can't add `ggtheme` to a object. + --- failed re-building ‘survParamSim.Rmd’ + + SUMMARY: processing the following file failed: + ‘survParamSim.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# survstan + +
+ +* Version: 0.0.7.1 +* GitHub: https://github.com/fndemarqui/survstan +* Source code: https://github.com/cran/survstan +* Date/Publication: 2024-04-12 16:50:02 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "survstan")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘LRT.Rmd’ using rmarkdown + + Quitting from LRT.Rmd:30-42 [unnamed-chunk-2] + Error: processing vignette 'LRT.Rmd' failed with diagnostics: + C stack usage 9962916 is too close to the limit + --- failed re-building ‘LRT.Rmd’ + + --- re-building ‘survstan.Rmd’ using rmarkdown + --- finished re-building ‘survstan.Rmd’ + + SUMMARY: processing the following file failed: + ‘LRT.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 79.0Mb + sub-directories of 1Mb or more: + libs 78.4Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘RcppParallel’ ‘rstantools’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# SWMPrExtension + +
+ +* Version: 2.2.5.1 +* GitHub: https://github.com/NOAA-OCM/SWMPrExtension +* Source code: https://github.com/cran/SWMPrExtension +* Date/Publication: 2024-01-11 23:40:13 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "SWMPrExtension")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘SWMPrExtension-Ex.R’ failed + The error most likely occurred in: + + > ### Name: annual_range + > ### Title: Annual Range Timeseries + > ### Aliases: annual_range annual_range.swmpr + > + > ### ** Examples + > + > ## Don't show: + ... + > + > y <- annual_range(dat, param = 'do_mgl', target_yr = 2012) + Warning: `aes_()` was deprecated in ggplot2 3.0.0. + ℹ Please use tidy evaluation idioms with `aes()` + ℹ The deprecated feature was likely used in the SWMPrExtension package. + Please report the issue at + . + Error: object properties are invalid: + - @margin must be or , not S3 + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.2Mb + sub-directories of 1Mb or more: + data 6.5Mb + ``` + +# symptomcheckR + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/ma-kopka/symptomcheckR +* Source code: https://github.com/cran/symptomcheckR +* Date/Publication: 2024-04-16 20:40:06 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "symptomcheckR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘symptomcheckR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_performance_multiple + > ### Title: plot_performance_multiple + > ### Aliases: plot_performance_multiple + > + > ### ** Examples + > + > data(symptomcheckRdata) + ... + 38. │ └─grid:::validGrob.grob(g) + 39. │ ├─grid::validDetails(x) + 40. │ └─grid:::validDetails.text(x) + 41. │ ├─base::as.character(x$label) + 42. │ └─base::as.character.default(x$label) + 43. └─base::.handleSimpleError(...) + 44. └─purrr (local) h(simpleError(msg, call)) + 45. └─cli::cli_abort(...) + 46. └─rlang::abort(...) + Execution halted + ``` + +# synthpop + +
+ +* Version: 1.9-1 +* GitHub: NA +* Source code: https://github.com/cran/synthpop +* Date/Publication: 2025-03-06 16:40:02 UTC +* Number of recursive dependencies: 64 + +Run `revdepcheck::cloud_details(, "synthpop")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘synthpop-Ex.R’ failed + The error most likely occurred in: + + > ### Name: utility.tables + > ### Title: Tables and plots of utility measures + > ### Aliases: utility.tables utility.tables.synds utility.tables.data.frame + > ### utility.tables.list print.utility.tables + > + > ### ** Examples + > + ... + + Two-way utility: S_pMSE value plotted for 15 pairs of variables. + + Variable combinations with worst 5 utility scores (S_pMSE): + 3.edu:4.marital 4.marital:6.income 2.age:4.marital 2.age:6.income + 2.3595 1.8007 1.5032 1.1217 + 5.region:6.income + 1.1145 + Error: Can't find property @i + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘disclosure.Rnw’ using Sweave + New version of synthpop (1.9-0) with disclosure functions + see disclosure.pdf for details and NEWS file for other changes + + Find out more at https://www.synthpop.org.uk/ + Error: processing vignette 'disclosure.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'disclosure.tex' failed. + LaTeX errors: + ! LaTeX Error: File `authblk.sty' not found. + ... + l.6 \usepackage + {framed}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building 'utility.Rnw' + + SUMMARY: processing the following files failed: + ‘disclosure.Rnw’ ‘inference.Rnw’ ‘utility.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# Sysrecon + +
+ +* Version: 0.1.3 +* GitHub: NA +* Source code: https://github.com/cran/Sysrecon +* Date/Publication: 2023-02-20 08:50:02 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "Sysrecon")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘Sysrecon-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Sysrecon + > ### Title: Sysrecon + > ### Aliases: Sysrecon + > + > ### ** Examples + > + > + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 38 marked UTF-8 strings + ``` + +# tabledown + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/masiraji/tabledown +* Source code: https://github.com/cran/tabledown +* Date/Publication: 2024-05-02 13:40:03 UTC +* Number of recursive dependencies: 164 + +Run `revdepcheck::cloud_details(, "tabledown")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tabledown-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggreliability_plotly + > ### Title: A Function for Creating Item Response Theory based reliability + > ### plot based on plotly. + > ### Aliases: ggreliability_plotly + > + > ### ** Examples + > + ... + Iteration: 17, Log-Lik: -5351.363, Max-Change: 0.00011 + Iteration: 18, Log-Lik: -5351.363, Max-Change: 0.00054 + Iteration: 19, Log-Lik: -5351.363, Max-Change: 0.00012 + Iteration: 20, Log-Lik: -5351.363, Max-Change: 0.00035 + Iteration: 21, Log-Lik: -5351.363, Max-Change: 0.00010 + > + > plot <- ggreliability_plotly(data, model) + Error in pm[[2]] : subscript out of bounds + Calls: ggreliability_plotly -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 551 marked UTF-8 strings + ``` + +# tastypie + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/PaoloDalena/tastypie +* Source code: https://github.com/cran/tastypie +* Date/Publication: 2023-09-06 18:00:06 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "tastypie")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tastypie) + $$ $$ $$ + __||__||__||__ + | * * * * * * *| + |* * * * * * * | + | * * * * * * *| + ... + * ggplot2::gg + * S7_object + Backtrace: + ▆ + 1. └─testthat::expect_match(class(b), "gg") at test-templates.R:37:3 + 2. └─testthat:::expect_match_(...) + + [ FAIL 45 | WARN 38 | SKIP 0 | PASS 74 ] + Error: Test failures + Execution halted + ``` + +# taylor + +
+ +* Version: 3.2.0 +* GitHub: https://github.com/wjakethompson/taylor +* Source code: https://github.com/cran/taylor +* Date/Publication: 2025-01-07 20:50:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "taylor")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘lyrics.Rmd’ using rmarkdown + --- finished re-building ‘lyrics.Rmd’ + + --- re-building ‘palettes.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 50 marked UTF-8 strings + ``` + +# TcGSA + +
+ +* Version: 0.12.10 +* GitHub: https://github.com/sistm/TcGSA +* Source code: https://github.com/cran/TcGSA +* Date/Publication: 2022-02-28 21:40:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "TcGSA")` for more info + +
+ +## Newly broken + +* checking Rd cross-references ... WARNING + ``` + Missing link or links in Rd file 'plot1GS.Rd': + ‘+.gg’ + + Missing link or links in Rd file 'plotFit.GS.Rd': + ‘+.gg’ + + Missing link or links in Rd file 'plotMultipleGS.Rd': + ‘+.gg’ + + Missing link or links in Rd file 'plotPat.1GS.Rd': + ‘+.gg’ + + Missing link or links in Rd file 'plotSelect.GS.Rd': + ‘+.gg’ + + See section 'Cross-references' in the 'Writing R Extensions' manual. + ``` + +# TCIU + +
+ +* Version: 1.2.7 +* GitHub: https://github.com/SOCR/TCIU +* Source code: https://github.com/cran/TCIU +* Date/Publication: 2024-09-15 02:40:02 UTC +* Number of recursive dependencies: 166 + +Run `revdepcheck::cloud_details(, "TCIU")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘TCIU-Ex.R’ failed + The error most likely occurred in: + + > ### Name: fmri_image + > ### Title: interactive graph object of the fMRI image + > ### Aliases: fmri_image + > + > ### ** Examples + > + > fmri_generate = fmri_simulate_func(dim_data = c(64, 64, 40), mask = mask) + > fmri_image(fmri_generate$fmri_data, option='manually', voxel_location = c(40,22,33), time = 4) + Error in pm[[2]] : subscript out of bounds + Calls: fmri_image ... add_trace -> add_data -> ggplotly -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown + --- finished re-building ‘tciu-LT-kimesurface.Rmd’ + + --- re-building ‘tciu-fMRI-analytics.Rmd’ using rmarkdown + + Quitting from tciu-fMRI-analytics.Rmd:183-185 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `pm[[2]]`: + ... + + Error: processing vignette 'tciu-fMRI-analytics.Rmd' failed with diagnostics: + subscript out of bounds + --- failed re-building ‘tciu-fMRI-analytics.Rmd’ + + SUMMARY: processing the following file failed: + ‘tciu-fMRI-analytics.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 14.1Mb + sub-directories of 1Mb or more: + data 1.5Mb + doc 12.0Mb + ``` + +# teal.reporter + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/insightsengineering/teal.reporter +* Source code: https://github.com/cran/teal.reporter +* Date/Publication: 2025-01-24 19:10:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "teal.reporter")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘teal.reporter-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Renderer + > ### Title: 'Renderer' + > ### Aliases: Renderer + > ### Keywords: internal + > + > ### ** Examples + > + ... + + Error in `knitr::include_graphics()`: + ! Cannot find the file(s): "file10646c0acc56.png" + --- + Backtrace: + ▆ + 1. └─knitr::include_graphics(path = "file10646c0acc56.png") + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > pkg_name <- "teal.reporter" + > library(pkg_name, character.only = TRUE) + + > testthat::test_check(pkg_name) + + Attaching package: 'testthat' + + ... + 21. │ │ │ └─domain$wrapSync(expr) + 22. │ │ │ └─base::force(expr) + 23. │ │ └─withr::with_options(...) + 24. │ │ └─base::force(code) + 25. │ └─rlang::eval_tidy(quosure, mask, rlang::caller_env()) + 26. └─testthat::expect_true(any(grepl("[.]html", files))) at test-SimpleReporter.R:37:7 + + [ FAIL 17 | WARN 8 | SKIP 0 | PASS 311 ] + Error: Test failures + Execution halted + ``` + +# teal.widgets + +
+ +* Version: 0.4.3 +* GitHub: https://github.com/insightsengineering/teal.widgets +* Source code: https://github.com/cran/teal.widgets +* Date/Publication: 2025-01-31 17:50:01 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "teal.widgets")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > pkg_name <- "teal.widgets" + > library(pkg_name, character.only = TRUE) + > testthat::test_check(pkg_name) + [ FAIL 3 | WARN 0 | SKIP 21 | PASS 203 ] + + ══ Skipped tests (21) ══════════════════════════════════════════════════════════ + • testing depth 3 is below current testing specification 5 (21): + ... + ── Failure ('test-ggplot2_args.R:267:5'): parse_ggplot2_args, when resolve_ggplot2_args priorotizes input in the order: user_plot, user_default, teal.ggplot2_args and module_plot ── + deparse(parsed_all$theme, 500) not identical to "ggplot2::theme(axis.text = structure(list(), class = c(\"element_blank\", \"element\")))". + 1/1 mismatches + x[1]: "ggplot2::theme(axis.text = )" + y[1]: "ggplot2::theme(axis.text = structure(list(), class = c(\"element_blank\", + y[1]: \"element\")))" + + [ FAIL 3 | WARN 0 | SKIP 21 | PASS 203 ] + Error: Test failures + Execution halted + ``` + +# telraamStats + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/KetsiaGuichard/telraamStats +* Source code: https://github.com/cran/telraamStats +* Date/Publication: 2024-05-27 17:40:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "telraamStats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘telraamStats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gg_car_speed_histogram + > ### Title: Histogram of car speed over a period, for a segment or a subset + > ### of segment. + > ### Aliases: gg_car_speed_histogram + > + > ### ** Examples + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘data-details.Rmd’ using rmarkdown + --- finished re-building ‘data-details.Rmd’ + + --- re-building ‘data-visualization.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 3271 marked UTF-8 strings + ``` + +# Tendril + +
+ +* Version: 2.0.4 +* GitHub: https://github.com/Karpefors/Tendril +* Source code: https://github.com/cran/Tendril +* Date/Publication: 2020-02-11 11:00:02 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "Tendril")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(Tendril) + > + > test_check("Tendril") + [ FAIL 1 | WARN 20 | SKIP 0 | PASS 46 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + `p` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + Backtrace: + ▆ + 1. ├─base::suppressWarnings(...) at test_plot_timeseries.R:7:3 + 2. │ └─base::withCallingHandlers(...) + 3. └─testthat::expect_s3_class(p, "gg") at test_plot_timeseries.R:24:5 + + [ FAIL 1 | WARN 20 | SKIP 0 | PASS 46 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘graphics’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# tern.mmrm + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/insightsengineering/tern.mmrm +* Source code: https://github.com/cran/tern.mmrm +* Date/Publication: 2024-09-23 04:20:02 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "tern.mmrm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tern.mmrm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tabulate_mmrm_subgroups + > ### Title: Tabulation of MMRM Subgroups Results + > ### Aliases: tabulate_mmrm_subgroups + > + > ### ** Examples + > + > mmrm_results <- fit_mmrm( + ... + Black or African American 42 3.5 (-0.8, 7.9) 0.1085 + White 36 3.0 (-1.5, 7.5) 0.1920 + SEX + Male 58 3.7 (0.2, 7.2) 0.0370 + Female 71 2.2 (-1.0, 5.3) 0.1753 + > + > ## Forest plot can be produced based on this very easily. + > g_forest(tab, logx = FALSE, xlim = c(-10, 10), x_at = c(-10, -5, 0, 5, 10), vline = 0) + Error: Can't find property @i + Execution halted + ``` + +# TestAnaAPP + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/jiangyouxiang/TestAnaAPP +* Source code: https://github.com/cran/TestAnaAPP +* Date/Publication: 2024-11-09 04:00:02 UTC +* Number of recursive dependencies: 253 + +Run `revdepcheck::cloud_details(, "TestAnaAPP")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(TestAnaAPP) # Replace with your package name + Loading required package: ggplot2 + Loading required package: mirt + Loading required package: stats4 + Loading required package: lattice + Loading required package: shinydashboard + ... + ── Failure ('test-wrightMap_new.R:26:3'): wrightMap_new handles Column names point labels correctly ── + `plot` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-wrightMap_new.R:36:3'): wrightMap_new handles single threshold column ── + `plot` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-wrightMap_new.R:47:3'): wrightMap_new respects plot dimensions ── + `plot` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 4 | WARN 0 | SKIP 0 | PASS 19 ] + Error: Test failures + Execution halted + ``` + +# TestGardener + +
+ +* Version: 3.3.5 +* GitHub: NA +* Source code: https://github.com/cran/TestGardener +* Date/Publication: 2024-09-18 17:40:02 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "TestGardener")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘TestGardener-Ex.R’ failed + The error most likely occurred in: + + > ### Name: Ffuns_plot + > ### Title: Plot a selection of fit criterion F functions and their first + > ### two derivatives. + > ### Aliases: Ffuns_plot + > + > ### ** Examples + > + ... + > # short SweSAT multiple choice test with 24 items and 1000 examinees + > chcemat <- Quant_13B_problem_dataList$chcemat + > index <- Quant_13B_problem_parmList$index + > SfdList <- Quant_13B_problem_parmList$SfdList + > plotindex <- 1:3 + > indfine <- seq(0,100,len=101) + > Ffuns_plot(indfine, index, SfdList, chcemat, plotindex) + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +# texmex + +
+ +* Version: 2.4.9 +* GitHub: https://github.com/harrysouthworth/texmex +* Source code: https://github.com/cran/texmex +* Date/Publication: 2024-03-04 16:40:03 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "texmex")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘texmex-Ex.R’ failed + The error most likely occurred in: + + > ### Name: chi + > ### Title: Measures of extremal dependence + > ### Aliases: chi summary.chi plot.chi print.chi ggplot.chi + > ### print.summary.chi + > ### Keywords: multivariate + > + > ### ** Examples + ... + 7. │ ├─base::tryCatch(...) + 8. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) + 9. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 10. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) + 11. │ └─base::withCallingHandlers(...) + 12. └─ggplot2:::validate_as_data_frame(model) + 13. └─ggplot2:::check_data_frame_like(data) + 14. └─cli::cli_abort("{.code dim(data)} must return an {.cls integer} of length 2.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# texreg + +
+ +* Version: 1.39.4 +* GitHub: https://github.com/leifeld/texreg +* Source code: https://github.com/cran/texreg +* Date/Publication: 2024-07-24 12:20:01 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "texreg")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library("testthat") + > library("texreg") + Version: 1.39.4 + Date: 2024-07-23 + Author: Philip Leifeld (University of Manchester) + + Consider submitting praise using the praise or praise_interactive functions. + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plotreg.R:27:3'): plotreg works ────────────────────────────── + `p1` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-plotreg.R:68:3'): plotreg -odds ratio ──────────────────────── + `p7` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 2 | WARN 2 | SKIP 33 | PASS 210 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘texreg.Rnw’ using Sweave + Error: processing vignette 'texreg.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'texreg.tex' failed. + LaTeX errors: + ! LaTeX Error: File `thumbpdf.sty' not found. + + Type X to quit or to proceed, + or enter new name. (Default extension: sty) + ... + l.8 ^^M + + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘texreg.Rnw’ + + SUMMARY: processing the following file failed: + ‘texreg.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'AER', 'alpaca', 'betareg', 'Bergm', 'bife', 'biglm', 'brglm', + 'brms', 'btergm', 'dynlm', 'eha', 'ergm', 'feisr', 'fGarch', + 'fixest', 'forecast', 'gamlss', 'gamlss.inf', 'gee', 'glmmTMB', + 'gmm', 'gnm', 'h2o', 'latentnet', 'lfe', 'logitr', 'lqmm', 'maxLik', + 'metaSEM', 'mfx', 'mhurdle', 'miceadds', 'mlogit', 'MuMIn', 'oglmx', + 'ordinal', 'pglm', 'plm', 'relevent', 'remify', 'remstats', + 'remstimate', 'rms', 'robust', 'simex', 'spatialreg', 'spdep', + 'speedglm', 'truncreg', 'VGAM' + ``` + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘h2o’, ‘spatialreg’, ‘eha’, ‘MuMIn’, ‘Bergm’, ‘mfx’, ‘betareg’, ‘bife’, ‘biglm’, ‘brglm’, ‘brms’, ‘btergm’, ‘ordinal’, ‘dynlm’, ‘ergm’, ‘latentnet’, ‘forecast’, ‘fGarch’, ‘alpaca’, ‘feisr’, ‘lfe’, ‘fixest’, ‘gamlss’, ‘gamlss.inf’, ‘gee’, ‘gmm’, ‘miceadds’, ‘glmmTMB’, ‘gnm’, ‘AER’, ‘robust’, ‘lqmm’, ‘rms’, ‘maxLik’, ‘mhurdle’, ‘mlogit’, ‘oglmx’, ‘plm’, ‘pglm’, ‘relevent’, ‘remstimate’, ‘simex’, ‘speedglm’, ‘truncreg’, ‘VGAM’, ‘metaSEM’ + ``` + +# textplot + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/bnosac/textplot +* Source code: https://github.com/cran/textplot +* Date/Publication: 2022-07-17 20:10:02 UTC +* Number of recursive dependencies: 143 + +Run `revdepcheck::cloud_details(, "textplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘textplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.BTM + > ### Title: Plot function for a BTM object + > ### Aliases: plot.BTM + > + > ### ** Examples + > + > ## Don't show: + ... + 1. ├─base::plot(...) + 2. └─textplot:::plot.BTM(...) + 3. ├─textplot::textplot_bitermclusters(...) + 4. └─textplot:::textplot_bitermclusters.default(...) + 5. └─ggraph::geom_edge_link0(ggplot2::aes(edge_alpha = cooc, edge_width = cooc, edge_colour = best_topic)) + 6. └─ggplot2::layer(...) + 7. └─ggplot2:::validate_mapping(mapping, call_env) + 8. └─cli::cli_abort(msg, call = call) + 9. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘textplot-examples.Rnw’ using knitr + + Attaching package: 'igraph' + + The following objects are masked from 'package:stats': + + decompose, spectrum + + The following object is masked from 'package:base': + ... + + Error: processing vignette 'textplot-examples.Rnw' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘textplot-examples.Rnw’ + + SUMMARY: processing the following file failed: + ‘textplot-examples.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# thematic + +
+ +* Version: 0.1.6 +* GitHub: https://github.com/rstudio/thematic +* Source code: https://github.com/cran/thematic +* Date/Publication: 2024-07-29 15:50:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "thematic")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘thematic-Ex.R’ failed + The error most likely occurred in: + + > ### Name: auto_config + > ### Title: Configure auto theming behavior + > ### Aliases: auto_config auto_config_set auto_config_get + > + > ### ** Examples + > + > old_config <- auto_config_set(auto_config("black", "white")) + > thematic_with_theme( + + thematic_theme(), { + + plot(1:10, 1:10) + + }) + Error in get(x, envir = ns, inherits = FALSE) : + object 'ggplot_build.ggplot' not found + Calls: thematic_with_theme ... -> ggplot_build_set -> getFromNamespace -> get + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(thematic) + > + > test_check("thematic") + [ FAIL 17 | WARN 0 | SKIP 5 | PASS 13 ] + + ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ + ... + Backtrace: + ▆ + 1. └─thematic::thematic_on("black", "white", "green") at test-state.R:54:3 + 2. └─thematic:::ggplot_build_set() + 3. └─utils::getFromNamespace("ggplot_build.ggplot", "ggplot2") + 4. └─base::get(x, envir = ns, inherits = FALSE) + + [ FAIL 17 | WARN 0 | SKIP 5 | PASS 13 ] + Error: Test failures + Execution halted + ``` + +# ThermalSampleR + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/ThermalSampleR +* Date/Publication: 2024-02-17 23:30:08 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "ThermalSampleR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test_boot_one.R’ + Running ‘test_boot_two.R’ + Running ‘test_equiv_tost.R’ + Running ‘test_plot_one_group.R’ + Running the tests in ‘tests/test_plot_one_group.R’ failed. + Complete output: + > library(ThermalSampleR) + > library(testthat) + > coreid = ThermalSampleR::coreid_data + > + ... + + colour_exp = "forestgreen", + + # Colour for the extrapolated predictions + + colour_extrap = "orange", + + # Position of the legend + + legend.position = "right", + + # Change the degree of shading on the graph + + alpha_val = 0.25) + Error: object properties are invalid: + - @margin must be or , not S3 + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘MASS’ ‘base’ ‘graphics’ ‘janitor’ ‘rlang’ ‘testthat’ ‘utils’ + All declared Imports should be used. + ``` + +# tickr + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/ben-williams/tickr +* Source code: https://github.com/cran/tickr +* Date/Publication: 2025-04-10 14:30:05 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "tickr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-tickr.R:20:3'): scale_x_tickr returns a ggplot ─────────────── + plot + scale_x_tickr(data = df, var = year) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-tickr.R:24:3'): scale_y_tickr returns a ggplot ─────────────── + plot + scale_y_tickr(data = df, var = value) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 3 ] + Error: Test failures + Execution halted + ``` + +# tidycat + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/guyabel/tidycat +* Source code: https://github.com/cran/tidycat +* Date/Publication: 2021-08-02 04:20:01 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "tidycat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tidycat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tidy_categorical + > ### Title: Expand broom::tidy() Outputs for Categorical Parameter Estimates + > ### Aliases: tidy_categorical + > + > ### ** Examples + > + > # strip ordering in factors (currently ordered factor not supported) + ... + > ggplot(data = d0, + + mapping = aes(x = level, colour = reference, + + y = estimate, ymin = conf.low, ymax = conf.high)) + + + facet_row(facets = vars(variable), scales = "free_x", space = "free") + + + geom_hline(yintercept = 0, linetype = "dashed") + + + geom_pointrange() + + + theme(axis.text.x = element_text(angle = 45, hjust = 1)) + Error in space$x : $ operator is invalid for atomic vectors + Calls: ... -> draw_panels -> -> init_gtable + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘intro.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘tidyr’ + All declared Imports should be used. + ``` + +# tidyCDISC + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/Biogen-Inc/tidyCDISC +* Source code: https://github.com/cran/tidyCDISC +* Date/Publication: 2023-03-16 14:20:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "tidyCDISC")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tidyCDISC) + > library(shinyjs) + + Attaching package: 'shinyjs' + + ... + 'test-tableGen_fct_y_freq.R:35:1' + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Error: (code run outside of `test_that()`) ────────────────────────────────── + + Error: C stack usage 9963204 is too close to the limit + + [ FAIL 1 | WARN 1 | SKIP 15 | PASS 91 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.5Mb + sub-directories of 1Mb or more: + R 1.5Mb + data 2.0Mb + doc 1.8Mb + ``` + +# tidychangepoint + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/tidychangepoint +* Date/Publication: 2025-01-31 20:50:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "tidychangepoint")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tidychangepoint-Ex.R’ failed + The error most likely occurred in: + + > ### Name: diagnose + > ### Title: Diagnose the fit of a segmented time series + > ### Aliases: diagnose diagnose.mod_cpt diagnose.seg_basket diagnose.tidycpt + > ### diagnose.nhpp + > + > ### ** Examples + > + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 16. └─ggplot2:::add_ggplot(e1, e2, e2name) + 17. └─ggplot2::ggplot_add(object, p, objectname) + 18. ├─S7::S7_dispatch() + 19. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 20. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 21. └─rlang::abort(...) + + [ FAIL 4 | WARN 0 | SKIP 10 | PASS 247 ] + Error: Test failures + Execution halted + ``` + +# tidycomm + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/joon-e/tidycomm +* Source code: https://github.com/cran/tidycomm +* Date/Publication: 2024-02-22 12:20:02 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "tidycomm")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tidycomm) + + Attaching package: 'tidycomm' + + The following object is masked from 'package:testthat': + + ... + visualize(correlate(WoJ, ethics_1, ethics_2)) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-tdcmm_visualize.R:39:3'): implemented visualize() calls return ggplot2 (gg) ── + visualize(correlate(WoJ, ethics_1, ethics_2), which = "alpha") inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Error ('test-tdcmm_visualize.R:3:1'): implemented visualize() calls return ggplot2 (gg) ── + + Error: C stack usage 9962404 is too close to the limit + + [ FAIL 15 | WARN 0 | SKIP 0 | PASS 364 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘v01_univariate.Rmd’ using rmarkdown + ``` + +# TidyDensity + +
+ +* Version: 1.5.0 +* GitHub: https://github.com/spsanderson/TidyDensity +* Source code: https://github.com/cran/TidyDensity +* Date/Publication: 2024-05-28 13:50:03 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "TidyDensity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘TidyDensity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tidy_four_autoplot + > ### Title: Automatic Plot of Density Data + > ### Aliases: tidy_four_autoplot + > + > ### ** Examples + > + > tidy_normal(.num_sims = 5) |> + ... + 9. └─base_ops[[.Generic]](e1, e2) + 10. ├─S7::S7_dispatch() + 11. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 12. └─ggplot2:::add_ggplot(e1, e2, e2name) + 13. └─ggplot2::ggplot_add(object, p, objectname) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +# tidydr + +
+ +* Version: 0.0.5 +* GitHub: https://github.com/YuLab-SMU/tidydr +* Source code: https://github.com/cran/tidydr +* Date/Publication: 2023-03-08 09:20:02 UTC +* Number of recursive dependencies: 76 + +Run `revdepcheck::cloud_details(, "tidydr")` for more info + +
+ +## Newly broken + +* checking whether package ‘tidydr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'len0_null' not found +Error: unable to load R code in package ‘tidydr’ +Execution halted +ERROR: lazy loading failed for package ‘tidydr’ +* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’ + + +``` +### CRAN + +``` +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (tidydr) + + +``` +# tidyEdSurvey + +
+ +* Version: 0.1.3 +* GitHub: NA +* Source code: https://github.com/cran/tidyEdSurvey +* Date/Publication: 2024-05-14 20:20:03 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "tidyEdSurvey")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(EdSurvey) + Loading required package: car + Loading required package: carData + Loading required package: lfactors + lfactors v1.0.4 + + ... + ── Failure ('test-ggplot.R:13:3'): density plot with facets and PVs ──────────── + class(p) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + ── Failure ('test-ggplot.R:21:3'): boxplot with facets and PVs ───────────────── + class(p) not equal to c("gg", "ggplot"). + Lengths differ: 4 is not 2 + + [ FAIL 2 | WARN 0 | SKIP 1 | PASS 10 ] + Error: Test failures + Execution halted + ``` + +# tidyfit + +
+ +* Version: 0.7.4 +* GitHub: https://github.com/jpfitzinger/tidyfit +* Source code: https://github.com/cran/tidyfit +* Date/Publication: 2025-04-29 18:50:02 UTC +* Number of recursive dependencies: 191 + +Run `revdepcheck::cloud_details(, "tidyfit")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Accessing_Fitted_Model_Objects.Rmd’ using rmarkdown + ``` + +# tidyHeatmap + +
+ +* Version: 1.11.6 +* GitHub: https://github.com/stemangiola/tidyHeatmap +* Source code: https://github.com/cran/tidyHeatmap +* Date/Publication: 2025-02-08 04:20:02 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "tidyHeatmap")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tidyHeatmap) + ======================================== + tidyHeatmap version 1.11.6 + If you use tidyHeatmap in published research, please cite: + 1) Mangiola et al. tidyHeatmap: an R package for modular heatmap production + based on tidy principles. JOSS 2020. + ... + • tests/scale-both.svg + • tests/scale-column.svg + • tests/scale-none.svg + • tests/text-complex.svg + • tests/text-multiple.svg + • tests/text-with-size-column.svg + • tests/text-with-size.svg + • tests/text-with-text-column.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + doc 4.5Mb + ``` + +# tidyLPA + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/data-edu/tidyLPA +* Source code: https://github.com/cran/tidyLPA +* Date/Publication: 2021-11-17 11:40:02 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "tidyLPA")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tidyLPA) + You can use the function citation('tidyLPA') to create a citation for the use of {tidyLPA}. + Mplus is not installed. Use only package = 'mclust' when calling estimate_profiles(). + > options("test_mplus" = FALSE) + > if(file.exists("test_local.R")) source("test_local.R") + > # To run all mplus tests, run the code below once to create a file that is not + ... + > test_check("tidyLPA") + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 10 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-plot-mixtures.R:5:1'): density plot works ──────────────────── + `density_plot` inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 10 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘mix’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) single_imputation.Rd:21-22: Lost braces in \itemize; meant \describe ? + checkRd: (-1) single_imputation.Rd:23-27: Lost braces in \itemize; meant \describe ? + ``` + +# tidyMC + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/stefanlinner/tidyMC +* Source code: https://github.com/cran/tidyMC +* Date/Publication: 2024-01-11 10:00:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "tidyMC")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tidyMC) + > + > test_check("tidyMC") + Running single test-iteration for each parameter combination... + + Progress: ───────────────────────────────────────────────────── 100% + ... + ── Failure ('test-mc_general.R:78:3'): Class of the outputs ──────────────────── + out.plot[[1]] inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-methods.R:119:3'): output format of plot.mc is correct ─────── + plot_mc[[1]] inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-methods.R:129:3'): output format of summary.plot.mc is correct ── + plot_mc[[1]] inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 3 | WARN 1 | SKIP 0 | PASS 56 ] + Error: Test failures + Execution halted + ``` + +# tidypaleo + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/paleolimbot/tidypaleo +* Source code: https://github.com/cran/tidypaleo +* Date/Publication: 2023-01-18 08:20:03 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "tidypaleo")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tidypaleo-Ex.R’ failed + The error most likely occurred in: + + > ### Name: facet_abundanceh + > ### Title: Facet for relative abundance data + > ### Aliases: facet_abundanceh facet_abundance facet_geochem_wraph + > ### facet_geochem_wrap facet_geochem_grid facet_geochem_gridh + > + > ### ** Examples + > + ... + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_list, ggplot2::ggplot))`(...) + 13. └─ggplot2::ggplot_add(o, plot, object_name) + 14. ├─S7::S7_dispatch() + 15. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 16. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 17. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tidypaleo) + > + > test_check("tidypaleo") + [ FAIL 7 | WARN 4 | SKIP 11 | PASS 208 ] + + ══ Skipped tests (11) ══════════════════════════════════════════════════════════ + ... + 3. │ └─vdiffr:::print_plot(plot, title) + 4. └─tidypaleo::stat_nested_hclust() + 5. └─ggplot2::layer(...) + 6. └─ggplot2:::validate_mapping(mapping, call_env) + 7. └─cli::cli_abort(msg, call = call) + 8. └─rlang::abort(...) + + [ FAIL 7 | WARN 4 | SKIP 11 | PASS 208 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘age_depth.Rmd’ using rmarkdown + ``` + +# tidyplots + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/jbengler/tidyplots +* Source code: https://github.com/cran/tidyplots +* Date/Publication: 2025-03-07 20:40:02 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "tidyplots")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tidyplots-Ex.R’ failed + The error most likely occurred in: + + > ### Name: add + > ### Title: Add ggplot2 code to a tidyplot + > ### Aliases: add + > + > ### ** Examples + > + > study |> + + tidyplot(x = treatment, y = score, color = treatment) |> + + add(ggplot2::geom_point()) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + • labels/reverse-x.svg + • labels/reverse-y.svg + • labels/sort-color-1.svg + • labels/sort-color-2.svg + • labels/sort-x-1.svg + • labels/sort-x-2.svg + • labels/sort-y-1.svg + • labels/sort-y-2.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘tidyplots.Rmd’ using rmarkdown + + Quitting from tidyplots.Rmd:79-82 [unnamed-chunk-5] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + + Error: processing vignette 'tidyplots.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘tidyplots.Rmd’ + + SUMMARY: processing the following file failed: + ‘tidyplots.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# tidyposterior + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/tidymodels/tidyposterior +* Source code: https://github.com/cran/tidyposterior +* Date/Publication: 2023-10-11 18:50:02 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "tidyposterior")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tidyposterior) + > + > test_check("tidyposterior") + + Attaching package: 'rsample' + + ... + `expected`: ".upper" + ── Failure ('test_perf_mod.R:288:3'): workflow sets ──────────────────────────── + as.character(p_rope$labels$colour) (`actual`) not equal to "workflow" (`expected`). + + `actual`: + `expected`: "workflow" + + [ FAIL 12 | WARN 32 | SKIP 5 | PASS 116 ] + Error: Test failures + Execution halted + ``` + +# tidysdm + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/EvolEcolGroup/tidysdm +* Source code: https://github.com/cran/tidysdm +* Date/Publication: 2025-03-05 17:40:02 UTC +* Number of recursive dependencies: 192 + +Run `revdepcheck::cloud_details(, "tidysdm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tidysdm-Ex.R’ failed + The error most likely occurred in: + + > ### Name: autoplot.spatial_initial_split + > ### Title: Create a ggplot for a spatial initial rsplit. + > ### Aliases: autoplot.spatial_initial_split + > + > ### ** Examples + > + > + > set.seed(123) + > block_initial <- spatial_initial_split(boston_canopy, + + prop = 1 / 5, spatial_block_cv + + ) + > autoplot(block_initial) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + `expected`: TRUE + ── Failure ('test_simple_ensemble.R:63:3'): add_member to empty simple ensemble ── + inherits(p, "gg") is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 2 | WARN 2 | SKIP 0 | PASS 331 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown + + Quitting from a0_tidysdm_overview.Rmd:176-183 [unnamed-chunk-3] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'a0_tidysdm_overview.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + ... + Quitting from a1_palaeodata_application.Rmd:69-74 [cast_to_sf] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'a1_palaeodata_application.Rmd' failed with diagnostics: + `mapping` must be created by `aes()`. + --- failed re-building ‘a1_palaeodata_application.Rmd’ + + --- re-building ‘a2_tidymodels_additions.Rmd’ using rmarkdown + ``` + +# tidyseurat + +
+ +* Version: 0.8.0 +* GitHub: https://github.com/stemangiola/tidyseurat +* Source code: https://github.com/cran/tidyseurat +* Date/Publication: 2024-01-10 04:50:02 UTC +* Number of recursive dependencies: 191 + +Run `revdepcheck::cloud_details(, "tidyseurat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tidyseurat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggplot + > ### Title: Create a new 'ggplot' from a 'tidyseurat' + > ### Aliases: ggplot ggplot.Seurat + > + > ### ** Examples + > + > library(ggplot2) + ... + 12. │ └─ggplot2:::validate_as_data_frame(model) + 13. │ ├─base::as.data.frame(data) + 14. │ └─base::as.data.frame.default(data) + 15. │ └─base::stop(...) + 16. └─base::.handleSimpleError(...) + 17. └─rlang (local) h(simpleError(msg, call)) + 18. └─handlers[[1L]](cnd) + 19. └─cli::cli_abort(msg, parent = cnd) + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tidyseurat) + Loading required package: ttservice + Loading required package: SeuratObject + Loading required package: sp + + Attaching package: 'SeuratObject' + ... + 15. │ └─base::stop(...) + 16. └─base::.handleSimpleError(...) + 17. └─rlang (local) h(simpleError(msg, call)) + 18. └─handlers[[1L]](cnd) + 19. └─cli::cli_abort(msg, parent = cnd) + 20. └─rlang::abort(...) + + [ FAIL 1 | WARN 11 | SKIP 0 | PASS 68 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘figures_article.Rmd’ using knitr + --- finished re-building ‘figures_article.Rmd’ + + --- re-building ‘introduction.Rmd’ using knitr + + **Brings Seurat to the tidyverse!** + + website: [stemangiola.github.io/tidyseurat/](https://stemangiola.github.io/tidyseurat/) + + ... + a valid -like object coercible by `as.data.frame()`. + Caused by error in `as.data.frame.default()`: + ! cannot coerce class 'structure("Seurat", package = "SeuratObject")' to a data.frame + --- failed re-building ‘introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# tidyterra + +
+ +* Version: 0.7.2 +* GitHub: https://github.com/dieghernan/tidyterra +* Source code: https://github.com/cran/tidyterra +* Date/Publication: 2025-04-14 10:50:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "tidyterra")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tidyterra-Ex.R’ failed + The error most likely occurred in: + + > ### Name: volcano2 + > ### Title: Updated topographic information on Auckland's Maungawhau volcano + > ### Aliases: volcano2 + > + > ### ** Examples + > + > + ... + Error in `geom_spatraster()`: + ! `mapping` must be created by `aes()`. + Backtrace: + ▆ + 1. └─tidyterra::geom_spatraster(data = volcano2_raster) + 2. └─ggplot2::layer(...) + 3. └─ggplot2:::validate_mapping(mapping, call_env) + 4. └─cli::cli_abort(msg, call = call) + 5. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ▆ + 1. └─tidyterra::geom_spatraster(data = r) at test-scales_grass.R:725:3 + 2. └─ggplot2::layer(...) + 3. └─ggplot2:::validate_mapping(mapping, call_env) + 4. └─cli::cli_abort(msg, call = call) + 5. └─rlang::abort(...) + + [ FAIL 2 | WARN 0 | SKIP 401 | PASS 107 ] + Error: Test failures + Execution halted + ``` + +# timetk + +
+ +* Version: 2.9.0 +* GitHub: https://github.com/business-science/timetk +* Source code: https://github.com/cran/timetk +* Date/Publication: 2023-10-31 22:30:02 UTC +* Number of recursive dependencies: 205 + +Run `revdepcheck::cloud_details(, "timetk")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 7. └─timetk:::plot_time_series.grouped_df(...) + 8. ├─timetk::plot_time_series(...) + 9. └─timetk:::plot_time_series.data.frame(...) + 10. ├─plotly::ggplotly(g, dynamicTicks = TRUE) + 11. └─plotly:::ggplotly.ggplot(g, dynamicTicks = TRUE) + 12. └─plotly::gg2list(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 406 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2750 marked UTF-8 strings + ``` + +# tinyarray + +
+ +* Version: 2.4.3 +* GitHub: https://github.com/xjsun1221/tinyarray +* Source code: https://github.com/cran/tinyarray +* Date/Publication: 2025-03-05 13:20:02 UTC +* Number of recursive dependencies: 249 + +Run `revdepcheck::cloud_details(, "tinyarray")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tinyarray-Ex.R’ failed + The error most likely occurred in: + + > ### Name: box_surv + > ### Title: box_surv + > ### Aliases: box_surv + > + > ### ** Examples + > + > if(requireNamespace("ggpubr",quietly = TRUE)) { + ... + 14. └─base_ops[[.Generic]](e1, e2) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 17. └─ggplot2:::add_ggplot(e1, e2, e2name) + 18. └─ggplot2::ggplot_add(object, p, objectname) + 19. ├─S7::S7_dispatch() + 20. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 21. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 22. └─rlang::abort(...) + Execution halted + ``` + +# tip + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/tip +* Date/Publication: 2022-11-14 17:30:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "tip")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tip-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggplot_line_point + > ### Title: Plot connected points using ggplot2 + > ### Aliases: ggplot_line_point + > + > ### ** Examples + > + > # Import the tip library + ... + > # Create a label that appears on the horizontal axis + > xlab <- "x" + > + > # Create a label that appears on the vertical axis + > ylab <- "y" + > + > # Create the plot of y versus x with + > ggplot_line_point(.x = x, .y = y, .xlab = xlab, .ylab = ylab) + Error: C stack usage 9961732 is too close to the limit + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘matrix-CONSTANT-simulated-vignette.Rmd’ using rmarkdown + + Quitting from matrix-CONSTANT-simulated-vignette.Rmd:93-96 [unnamed-chunk-3] + Error: processing vignette 'matrix-CONSTANT-simulated-vignette.Rmd' failed with diagnostics: + C stack usage 9961796 is too close to the limit + --- failed re-building ‘matrix-CONSTANT-simulated-vignette.Rmd’ + + --- re-building ‘matrix-MNIW-simulated-vignette.Rmd’ using rmarkdown + + ... + --- failed re-building ‘vector-NIW-usarrests-vignette.Rmd’ + + SUMMARY: processing the following files failed: + ‘matrix-CONSTANT-simulated-vignette.Rmd’ + ‘matrix-MNIW-simulated-vignette.Rmd’ + ‘tensor-CONSTANT-simulated-vignette.Rmd’ + ‘vector-NIW-iris-vignette.Rmd’ ‘vector-NIW-usarrests-vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) partition_undirected_graph.Rd:20: Lost braces; missing escapes or markup? + 20 | \item{cutoff}{Numeric. The value max(0, g_{i,j} - cutoff) so that there are <\code{.num_components}> components in the graph.} + | ^ + ``` + +# tlars + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/jasinmachkour/tlars +* Source code: https://github.com/cran/tlars +* Date/Publication: 2024-02-24 00:30:02 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "tlars")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘tlars_variable_selection.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.9Mb + sub-directories of 1Mb or more: + doc 2.2Mb + libs 5.3Mb + ``` + +# tmt + +
+ +* Version: 0.3.4-0 +* GitHub: https://github.com/jansteinfeld/tmt +* Source code: https://github.com/cran/tmt +* Date/Publication: 2024-05-03 15:00:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "tmt")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tmt) + - tmt 0.3.4-0 (2024-05-02) + > + > test_check("tmt") + The following items are specified in the dataset, but not in the submitted mstdesign: ii1 + The following items are specified in the mstdesign, but not in the dataset: i1 + ... + [1] 1 - 11 == -10 + Backtrace: + ▆ + 1. └─testthat::expect_that(length(p), equals(11)) at test-tmt_gmc.R:34:5 + 2. └─testthat (local) condition(object) + 3. └─testthat::expect_equal(x, expected, ..., expected.label = label) + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 362 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘dexterMST’ + ``` + +# tntpr + +
+ +* Version: 1.2.1 +* GitHub: https://github.com/tntp/tntpr +* Source code: https://github.com/cran/tntpr +* Date/Publication: 2024-11-26 23:00:02 UTC +* Number of recursive dependencies: 158 + +Run `revdepcheck::cloud_details(, "tntpr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 4. │ ├─testthat (local) .capture(...) + 5. │ │ └─base::withCallingHandlers(...) + 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) + 7. └─testthat::expect_s3_class(theme_tntp_2018(), "theme") + ── Failure ('test-tntp_style.R:38:3'): tntp_style is a theme ─────────────────── + tntp_style() inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 3 | WARN 6 | SKIP 1 | PASS 119 ] + Error: Test failures + Execution halted + ``` + +# toxEval + +
+ +* Version: 1.4.0 +* GitHub: https://github.com/DOI-USGS/toxEval +* Source code: https://github.com/cran/toxEval +* Date/Publication: 2024-11-22 21:20:02 UTC +* Number of recursive dependencies: 140 + +Run `revdepcheck::cloud_details(, "toxEval")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘toxEval-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_chemical_boxplots + > ### Title: Grouped Boxplots + > ### Aliases: plot_chemical_boxplots plot_tox_boxplots + > + > ### ** Examples + > + > # This is the example workflow: + ... + > tox_list <- create_toxEval(full_path) + > ACC <- get_ACC(tox_list$chem_info$CAS) + > ACC <- remove_flags(ACC) + > + > cleaned_ep <- clean_endPoint_info(end_point_info) + > filtered_ep <- filter_groups(cleaned_ep) + > chemical_summary <- get_chemical_summary(tox_list, ACC, filtered_ep) + > plot_tox_boxplots(chemical_summary, "Biological") + Error: Can't get S7 properties with `$`. Did you mean `plot_info@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(toxEval) + For more information: + https://doi-usgs.github.io/toxEval/ + ToxCast database: version 4.1 + > test_check("toxEval") + [ FAIL 1 | WARN 0 | SKIP 19 | PASS 19 ] + ... + Error: Can't get S7 properties with `$`. Did you mean `ggplot_build(stackedPlot)@layout`? + Backtrace: + ▆ + 1. └─toxEval::plot_tox_endpoints(chemical_summary, "Chemical", top_num = 5) at tests_summary.R:415:3 + 2. ├─ggplot_build(stackedPlot)$layout + 3. └─S7:::`$.S7_object`(ggplot_build(stackedPlot), "layout") + + [ FAIL 1 | WARN 0 | SKIP 19 | PASS 19 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.6Mb + sub-directories of 1Mb or more: + R 6.7Mb + ``` + +# TPMplt + +
+ +* Version: 0.1.6 +* GitHub: https://github.com/CubicZebra/TPMplt +* Source code: https://github.com/cran/TPMplt +* Date/Publication: 2024-10-01 13:20:05 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "TPMplt")` for more info + +
+ +## Newly broken + +* checking whether package ‘TPMplt’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘TPMplt’ + See ‘/tmp/workdir/TPMplt/new/TPMplt.Rcheck/00install.out’ for details. + ``` + +# track2KBA + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/BirdLifeInternational/track2kba +* Source code: https://github.com/cran/track2KBA +* Date/Publication: 2024-07-01 10:40:07 UTC +* Number of recursive dependencies: 94 + +Run `revdepcheck::cloud_details(, "track2KBA")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > if ( requireNamespace("tinytest", quietly=TRUE) ){ + + tinytest::test_package("track2KBA") + + } + + test_estSpaceUse.R............ 0 tests + Attaching package: 'lubridate' + + ... + with cells of 0.411 square km + + test_mapKDE.R................. 1 tests OK + test_mapKDE.R................. 2 tests OK Error in if (msg != "") { : the condition has length > 1 + Calls: ... lapply -> FUN -> eval -> eval -> expect_silent -> fun + In addition: Warning message: + In Matching::ks.boot(WI, BW, alternative = "two.sided", nboots = iterations) : + For publication quality p-values it is recommended that 'nboots' + be set equal to at least 500 (preferably 1000) + Execution halted + ``` + +# tradeoffaucdim + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/luisgarcez11/tradeoffaucdim +* Source code: https://github.com/cran/tradeoffaucdim +* Date/Publication: 2025-05-02 09:40:02 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "tradeoffaucdim")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-05-plot_curve.R:11:3'): output ─────────────────────────────── + plot_curve(obj4)$plot_performance has type 'object', not 'list'. + ── Failure ('test-05-plot_curve.R:12:3'): output ─────────────────────────────── + plot_curve(obj4)$plot_time has type 'object', not 'list'. + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 38 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘speedglm’ + All declared Imports should be used. + ``` + +# trajmsm + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/awamaeva/R-package-trajmsm +* Source code: https://github.com/cran/trajmsm +* Date/Publication: 2024-10-05 19:00:02 UTC +* Number of recursive dependencies: 35 + +Run `revdepcheck::cloud_details(, "trajmsm")` for more info + +
+ +## Newly broken + +* checking whether package ‘trajmsm’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘trajmsm’ + See ‘/tmp/workdir/trajmsm/new/trajmsm.Rcheck/00install.out’ for details. + ``` + +# TransProR + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/SSSYDYSSS/TransProR +* Source code: https://github.com/cran/TransProR +* Date/Publication: 2025-02-18 09:00:05 UTC +* Number of recursive dependencies: 210 + +Run `revdepcheck::cloud_details(, "TransProR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘TransProR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: enrich_polar_bubble + > ### Title: Enrichment Polar Bubble Plot + > ### Aliases: enrich_polar_bubble + > + > ### ** Examples + > + > final_df <- data.frame(id = 1:10, Count = c(10, 20, 30, 40, 50, 60, 70, 80, 90, 100), + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +# traumar + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/bemts-hhs/traumar +* Source code: https://github.com/cran/traumar +* Date/Publication: 2025-03-25 05:30:02 UTC +* Number of recursive dependencies: 57 + +Run `revdepcheck::cloud_details(, "traumar")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-theme_cleaner.R:8:3'): theme_cleaner applies the correct default theme settings ── + p$theme inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + ── Failure ('test-theme_cleaner.R:66:3'): theme_cleaner handles empty facet panels ── + p$theme inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 270 ] + Error: Test failures + Execution halted + ``` + +# TreatmentPatterns + +
+ +* Version: 3.0.3 +* GitHub: https://github.com/darwin-eu/TreatmentPatterns +* Source code: https://github.com/cran/TreatmentPatterns +* Date/Publication: 2025-04-16 13:50:12 UTC +* Number of recursive dependencies: 154 + +Run `revdepcheck::cloud_details(, "TreatmentPatterns")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-ggSunburst.R:19:3'): ggSunburst ────────────────────────────── + all(class(gg) %in% c("gg", "ggplot")) is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 1 | WARN 6 | SKIP 60 | PASS 171 ] + Error: Test failures + Execution halted + ``` + +# treefit + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/hayamizu-lab/treefit-r +* Source code: https://github.com/cran/treefit +* Date/Publication: 2025-02-09 11:30:03 UTC +* Number of recursive dependencies: 157 + +Run `revdepcheck::cloud_details(, "treefit")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘treefit.Rmd’ using rmarkdown + ``` + +# treeheatr + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/trang1618/treeheatr +* Source code: https://github.com/cran/treeheatr +* Date/Publication: 2020-11-19 21:00:03 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "treeheatr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘treeheatr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: compute_tree + > ### Title: Compute decision tree from data set + > ### Aliases: compute_tree + > + > ### ** Examples + > + > fit_tree <- compute_tree(penguins, target_lab = 'species') + ... + Backtrace: + ▆ + 1. └─treeheatr::compute_tree(penguins, target_lab = "species") + 2. └─ggparty::ggparty(fit) + 3. └─ggplot2::ggplot(data = plot_data, mapping = mapping) + 4. ├─S7::S7_dispatch() + 5. └─ggplot2 (local) `method(ggplot2, class_any)`(data = ``, mapping = ``, ..., environment = ``) + 6. └─cli::cli_abort(...) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘explore.Rmd’ using rmarkdown + + Quitting from explore.Rmd:32-36 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'explore.Rmd' failed with diagnostics: + `mapping` must be created with `aes()`. + ✖ You've supplied an object. + --- failed re-building ‘explore.Rmd’ + + SUMMARY: processing the following file failed: + ‘explore.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# trelliscopejs + +
+ +* Version: 0.2.6 +* GitHub: https://github.com/hafen/trelliscopejs +* Source code: https://github.com/cran/trelliscopejs +* Date/Publication: 2021-02-01 08:00:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "trelliscopejs")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(trelliscopejs) + > + > test_check("trelliscopejs") + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 9. └─ggplot2:::add_ggplot(e1, e2, e2name) + 10. └─ggplot2::ggplot_add(object, p, objectname) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 13. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 14. └─rlang::abort(...) + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +# trending + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/reconverse/trending +* Source code: https://github.com/cran/trending +* Date/Publication: 2023-04-03 19:00:02 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "trending")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘Introduction.Rmd’ using rmarkdown + --- finished re-building ‘Introduction.Rmd’ + + --- re-building ‘prediction_intervals.Rmd’ using rmarkdown + + Quitting from prediction_intervals.Rmd:61-109 [poisson] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ... + + Error: processing vignette 'prediction_intervals.Rmd' failed with diagnostics: + Can't add `e2` to a object. + --- failed re-building ‘prediction_intervals.Rmd’ + + SUMMARY: processing the following file failed: + ‘prediction_intervals.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# TRexSelector + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/jasinmachkour/TRexSelector +* Source code: https://github.com/cran/TRexSelector +* Date/Publication: 2024-02-23 23:20:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "TRexSelector")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘TRexSelector_usage_and_simulations.Rmd’ using rmarkdown + + Quitting from TRexSelector_usage_and_simulations.Rmd:223-259 [FDR_and_TPR] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'TRexSelector_usage_and_simulations.Rmd' failed with diagnostics: + Can't add `TPR_vs_tFDR` to a object. + --- failed re-building ‘TRexSelector_usage_and_simulations.Rmd’ + + SUMMARY: processing the following file failed: + ‘TRexSelector_usage_and_simulations.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# tricolore + +
+ +* Version: 1.2.4 +* GitHub: https://github.com/jschoeley/tricolore +* Source code: https://github.com/cran/tricolore +* Date/Publication: 2024-05-15 15:00:02 UTC +* Number of recursive dependencies: 105 + +Run `revdepcheck::cloud_details(, "tricolore")` for more info + +
+ +## Newly broken + +* checking whether package ‘tricolore’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/tricolore/new/tricolore.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2 marked UTF-8 strings + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘tricolore’ ... +** package ‘tricolore’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: .onLoad failed in loadNamespace() for 'ggtern', details: + call: NULL + error: object properties are invalid: +- @lineend must be or , not S3 +Execution halted +ERROR: lazy loading failed for package ‘tricolore’ +* removing ‘/tmp/workdir/tricolore/new/tricolore.Rcheck/tricolore’ + + +``` +### CRAN + +``` +* installing *source* package ‘tricolore’ ... +** package ‘tricolore’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (tricolore) + + +``` +# triplot + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/ModelOriented/triplot +* Source code: https://github.com/cran/triplot +* Date/Publication: 2020-07-13 17:00:03 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "triplot")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘triplot-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.triplot + > ### Title: Plots triplot + > ### Aliases: plot.triplot + > + > ### ** Examples + > + > library(DALEX) + ... + > apartments_num_new_observation <- apartments_num[30, ] + > explainer_apartments <- explain(model = apartments_num_lm_model, + + data = apartments_num[,-1], + + y = apartments_num[, 1], + + verbose = FALSE) + > apartments_tri <- calculate_triplot(x = explainer_apartments, + + new_observation = apartments_num_new_observation[-1]) + > plot(apartments_tri) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(triplot) + > + > test_check("triplot") + Welcome to DALEX (version: 2.4.3). + Find examples and detailed introduction at: http://ema.drwhy.ai/ + Additional features will be available after installation of: ggpubr. + ... + 2. ├─triplot:::plot.triplot(apartments_tri, abbrev_labels = 5) + 3. │ ├─base::`$<-`(`*tmp*`, "labels", value = ``) + 4. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "labels", value = ``) + 5. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 6. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 7. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 4 | WARN 3 | SKIP 0 | PASS 72 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# triptych + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/aijordan/triptych +* Source code: https://github.com/cran/triptych +* Date/Publication: 2024-06-13 15:50:02 UTC +* Number of recursive dependencies: 62 + +Run `revdepcheck::cloud_details(, "triptych")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘triptych-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot.triptych + > ### Title: Plot methods for the triptych classes + > ### Aliases: plot.triptych autoplot.triptych plot.triptych_murphy + > ### autoplot.triptych_murphy plot.triptych_reliability + > ### autoplot.triptych_reliability plot.triptych_roc autoplot.triptych_roc + > ### plot.triptych_mcbdsc autoplot.triptych_mcbdsc + > + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +# tsfeatures + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/robjhyndman/tsfeatures +* Source code: https://github.com/cran/tsfeatures +* Date/Publication: 2023-08-28 14:00:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "tsfeatures")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘tsfeatures.Rmd’ using rmarkdown + trying URL 'https://github.com/robjhyndman/tsfeatures/raw/master/extra-data/yahoo.rda' + Content type 'application/octet-stream' length 7897660 bytes (7.5 MB) + ================================================== + downloaded 7.5 MB + + trying URL 'https://github.com/robjhyndman/tsfeatures/raw/master/extra-data/hwl.rda' + Content type 'application/octet-stream' length 185319 bytes (180 KB) + ================================================== + downloaded 180 KB + ``` + +# tsgc + +
+ +* Version: 0.0 +* GitHub: https://github.com/Craig-PT/tsgc +* Source code: https://github.com/cran/tsgc +* Date/Publication: 2024-08-26 12:10:04 UTC +* Number of recursive dependencies: 156 + +Run `revdepcheck::cloud_details(, "tsgc")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘tsgc-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_gy_components + > ### Title: Plots the growth rates and slope of the log cumulative growth + > ### rate + > ### Aliases: plot_gy_components + > + > ### ** Examples + > + ... + setting this dimension may lead to an invalid zoo object + Warning in `dim<-.zoo`(`*tmp*`, value = c(n, p)) : + setting this dimension may lead to an invalid zoo object + > + > # Plot filtered gy, g and gamma + > plot_gy_components(res, plt.start.date = as.Date("2020-07-06")) + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +# tsnet + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/bsiepe/tsnet +* Source code: https://github.com/cran/tsnet +* Date/Publication: 2024-02-28 11:30:02 UTC +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "tsnet")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ── Failure ('test-plot_compare_gvar.R:10:3'): plot.compare_gvar works with expected input ── + `result` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-plot_compare_gvar.R:47:3'): plot.compare_gvar changes model names ── + `result` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-plot_compare_gvar.R:60:3'): plot.compare_gvar works with both dec_rules ── + `result` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 4 | WARN 16 | SKIP 0 | PASS 104 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 159.7Mb + sub-directories of 1Mb or more: + libs 158.7Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# tvthemes + +
+ +* Version: 1.3.3 +* GitHub: https://github.com/Ryo-N7/tvthemes +* Source code: https://github.com/cran/tvthemes +* Date/Publication: 2024-02-27 15:00:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "tvthemes")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(tvthemes) + > library(ggplot2) + > + > test_check("tvthemes") + [ FAIL 22 | WARN 0 | SKIP 1 | PASS 597 ] + + ... + ── Failure ('test-spongebob.R:39:3'): theme_spongeBob works ──────────────────── + `thm` inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + ── Failure ('test-thelastairbender.R:13:3'): theme_avatar works ──────────────── + `thm` inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + ── Failure ('test-thelastairbender.R:39:3'): theme_avatar works ──────────────── + `thm` inherits from 'ggplot2::theme'/'gg'/'S7_object' not 'theme'. + + [ FAIL 22 | WARN 0 | SKIP 1 | PASS 597 ] + Error: Test failures + Execution halted + ``` + +# twowaytests + +
+ +* Version: 1.5 +* GitHub: NA +* Source code: https://github.com/cran/twowaytests +* Date/Publication: 2024-11-11 14:20:02 UTC +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "twowaytests")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘twowaytests-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gplotTwoWay + > ### Title: Box-and-Whisker, Violin Plots and Error Bars for Two-Way Layout + > ### Aliases: gplotTwoWay + > ### Keywords: functions + > + > ### ** Examples + > + ... + 21. └─vctrs (local) ``() + 22. └─vctrs::vec_default_ptype2(...) + 23. ├─base::withRestarts(...) + 24. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 25. │ └─base (local) doWithOneRestart(return(expr), restart) + 26. └─vctrs::stop_incompatible_type(...) + 27. └─vctrs:::stop_incompatible(...) + 28. └─vctrs:::stop_vctrs(...) + 29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# ubiquity + +
+ +* Version: 2.1.0 +* GitHub: https://github.com/john-harrold/ubiquity +* Source code: https://github.com/cran/ubiquity +* Date/Publication: 2025-01-07 14:30:02 UTC +* Number of recursive dependencies: 205 + +Run `revdepcheck::cloud_details(, "ubiquity")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ubiquity-Ex.R’ failed + The error most likely occurred in: + + > ### Name: gg_axis + > ### Title: Make Pretty ggplot x- or y-Axis Log 10 Scale + > ### Aliases: gg_axis + > + > ### ** Examples + > + > library("ggplot2") + ... + > # pretty up the axes + > p = prepare_figure(fo=p, purpose="print") + Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the ubiquity package. + Please report the issue at . + > # pretty log10 y-axis + > p_logy = gg_log10_yaxis(fo=p) + Error: Can't get S7 properties with `$`. Did you mean `fob@data`? + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Deployment.Rmd’ using rmarkdown + --- finished re-building ‘Deployment.Rmd’ + + --- re-building ‘Estimation.Rmd’ using rmarkdown + --- finished re-building ‘Estimation.Rmd’ + + --- re-building ‘Language.Rmd’ using rmarkdown + --- finished re-building ‘Language.Rmd’ + + ... + 2. └─ubiquity::gg_axis(...) + 3. ├─fob$data + 4. └─S7:::`$.S7_object`(fob, "data") + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'Simulation.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `fob@data`? + --- failed re-building ‘Simulation.Rmd’ + + --- re-building ‘Titration.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.3Mb + sub-directories of 1Mb or more: + doc 4.5Mb + ubinc 2.0Mb + ``` + +# ufs + +
+ +* Version: 0.5.12 +* GitHub: NA +* Source code: https://github.com/cran/ufs +* Date/Publication: 2024-03-09 22:30:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "ufs")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ufs-Ex.R’ failed + The error most likely occurred in: + + > ### Name: duoComparisonDiamondPlot + > ### Title: meansComparisonDiamondPlot and duoComparisonDiamondPlot + > ### Aliases: duoComparisonDiamondPlot meansComparisonDiamondPlot + > ### Keywords: hplot + > + > ### ** Examples + > + ... + + items='weight', + + compareBy='feed', + + xbreaks=c(100,200,300,400), + + showData=FALSE); + > duoComparisonDiamondPlot(mtcars, + + items=c('disp', 'hp'), + + compareBy='vs', + + xbreaks=c(100,200, 300, 400)); + Error: Can't get S7 properties with `$`. Did you mean `builtMeansPlot@layout`? + Execution halted + ``` + +# ulrb + +
+ +* Version: 0.1.6 +* GitHub: https://github.com/pascoalf/ulrb +* Source code: https://github.com/cran/ulrb +* Date/Publication: 2025-04-07 09:50:02 UTC +* Number of recursive dependencies: 81 + +Run `revdepcheck::cloud_details(, "ulrb")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘Glossary.Rmd’ using rmarkdown + --- finished re-building ‘Glossary.Rmd’ + + --- re-building ‘eco-analysis.Rmd’ using rmarkdown + ``` + +# umiAnalyzer + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/sfilges/umiAnalyzer +* Source code: https://github.com/cran/umiAnalyzer +* Date/Publication: 2021-11-25 08:40:02 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "umiAnalyzer")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘umiAnalyzer-Ex.R’ failed + The error most likely occurred in: + + > ### Name: AmpliconPlot + > ### Title: Generate Amplicon plots + > ### Aliases: AmpliconPlot + > + > ### ** Examples + > + > library(umiAnalyzer) + ... + ℹ Please use tidy evaluation idioms with `aes()` + ℹ The deprecated feature was likely used in the umiAnalyzer package. + Please report the issue at . + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + ℹ The deprecated feature was likely used in the umiAnalyzer package. + Please report the issue at . + Error in pm[[2]] : subscript out of bounds + Calls: AmpliconPlot -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +# umx + +
+ +* Version: 4.21.0 +* GitHub: https://github.com/tbates/umx +* Source code: https://github.com/cran/umx +* Date/Publication: 2024-11-15 03:30:02 UTC +* Number of recursive dependencies: 168 + +Run `revdepcheck::cloud_details(, "umx")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘umx-Ex.R’ failed + The error most likely occurred in: + + > ### Name: umxDiffMZ + > ### Title: MZ differences method for testing evidence for causality. + > ### Aliases: umxDiffMZ + > + > ### ** Examples + > + > data(twinData) + ... + 16. │ └─l$compute_geom_2(d, theme = plot@theme) + 17. │ └─ggplot2 (local) compute_geom_2(..., self = self) + 18. │ └─self$geom$use_defaults(...) + 19. │ └─ggplot2 (local) use_defaults(..., self = self) + 20. │ └─ggplot2:::check_aesthetics(new_params, nrow(data)) + 21. │ └─vctrs::list_sizes(x) + 22. └─vctrs:::stop_scalar_type(...) + 23. └─vctrs:::stop_vctrs(...) + 24. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library("testthat") + > library("umx") + Loading required package: OpenMx + To take full advantage of multiple cores, use: + mxOption(key='Number of Threads', value=parallel::detectCores()) #now + Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx) + For an overview type '?umx' + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Error ('test_umx_DOC_etc.r:12:2'): testing umxDiffMZ ──────────────────────── + Error in `annotate("text", x = labxy[1], y = labxy[2], label = blurb)`: Problem while setting up geom aesthetics. + ℹ Error occurred in the 4th layer. + Caused by error in `list_sizes()`: + ! `x$label` must be a vector, not a call. + + [ FAIL 1 | WARN 7 | SKIP 25 | PASS 352 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'DiagrammeRsvg', 'rsvg' + ``` + +* checking installed package size ... NOTE + ``` + installed size is 6.6Mb + sub-directories of 1Mb or more: + R 1.5Mb + help 4.5Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘foreign’ ‘psychTools’ ‘pwr’ ‘rmarkdown’ + All declared Imports should be used. + ``` + +# UnalR + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/estadisticaun/UnalR +* Source code: https://github.com/cran/UnalR +* Date/Publication: 2024-05-25 17:20:05 UTC +* Number of recursive dependencies: 168 + +Run `revdepcheck::cloud_details(, "UnalR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(UnalR) + > + > test_check("UnalR") + Starting 2 test processes + [ FAIL 1 | WARN 4 | SKIP 2 | PASS 73 ] + + ... + ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ + • On CRAN (2): 'test-Plot_Boxplot.R:48:3', 'test-Tabla.R:40:3' + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-Plot_Series.R:110:3'): Plot.Series() captura de algunos valores claves a retornar ── + `output_PlotSeries` has type 'object', not 'list'. + + [ FAIL 1 | WARN 4 | SKIP 2 | PASS 73 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.0Mb + sub-directories of 1Mb or more: + R 2.3Mb + data 2.0Mb + help 2.7Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 312859 marked UTF-8 strings + ``` + +# unhcrthemes + +
+ +* Version: 0.6.3 +* GitHub: https://github.com/unhcr-dataviz/unhcrthemes +* Source code: https://github.com/cran/unhcrthemes +* Date/Publication: 2025-01-16 13:00:02 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "unhcrthemes")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘unhcrthemes.Rmd’ using rmarkdown + + Quitting from unhcrthemes.Rmd:62-96 [setup] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'unhcrthemes.Rmd' failed with diagnostics: + ... + Can't merge the `plot.title` theme element. + Caused by error in `method(merge_element, list(class_any, class_any))`: + ! No method for merging into . + --- failed re-building ‘unhcrthemes.Rmd’ + + SUMMARY: processing the following file failed: + ‘unhcrthemes.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# ushr + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/SineadMorris/ushr +* Source code: https://github.com/cran/ushr +* Date/Publication: 2020-04-21 18:20:03 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "ushr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ushr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_pairs + > ### Title: Plot pairwise parameter distributions + > ### Aliases: plot_pairs + > + > ### ** Examples + > + > + ... + > + > model_output <- ushr(data = simulated_data) + Warning in sqrt(diag(fisher_info)) : NaNs produced + Warning in sqrt(diag(fisher_info)) : NaNs produced + Warning in sqrt(diag(fisher_info)) : NaNs produced + Warning in sqrt(diag(fisher_info)) : NaNs produced + > + > plot_pairs(model_output) + Error: C stack usage 9962948 is too close to the limit + Execution halted + ``` + +# usmap + +
+ +* Version: 0.7.1 +* GitHub: https://github.com/pdil/usmap +* Source code: https://github.com/cran/usmap +* Date/Publication: 2024-03-21 04:20:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "usmap")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘usmap-Ex.R’ failed + The error most likely occurred in: + + > ### Name: .east_north_central + > ### Title: East North Central census division + > ### Aliases: .east_north_central + > ### Keywords: datasets + > + > ### ** Examples + > + > plot_usmap(include = .east_north_central, labels = TRUE) + Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, : + package tibble not available: install first? + Calls: plot_usmap ... st_read -> st_read.character -> process_cpl_read_ogr + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + • data/statepov.svg + • plot/arizona-county-map-with-labels-and-fill.svg + • plot/example-data-state-map-with-custom-linewidth.svg + • plot/new-england-state-map-with-labels-excluding-maine.svg + • plot/southeastern-states-map-with-labels.svg + • plot/state-map-with-labels.svg + • plot/state-map-with-major-rivers.svg + • plot/state-population-map-with-blue-outlines.svg + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘usmap1.Rmd’ using rmarkdown + + Quitting from usmap1.Rmd:25-27 [unnamed-chunk-1] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `process_cpl_read_ogr()`: + ! package tibble not available: install first? + --- + Backtrace: + ... + + Error: processing vignette 'usmap3.Rmd' failed with diagnostics: + package tibble not available: install first? + --- failed re-building ‘usmap3.Rmd’ + + SUMMARY: processing the following files failed: + ‘usmap1.Rmd’ ‘usmap2.Rmd’ ‘usmap3.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Unexported objects imported by ':::' calls: + ‘usmapdata:::alaska_bbox’ ‘usmapdata:::ea_crs’ + ‘usmapdata:::hawaii_bbox’ ‘usmapdata:::transform_alaska’ + ‘usmapdata:::transform_hawaii’ + See the note in ?`:::` about the use of this operator. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 17 marked UTF-8 strings + ``` + +# utile.visuals + +
+ +* Version: 0.3.3 +* GitHub: https://github.com/efinite/utile.visuals +* Source code: https://github.com/cran/utile.visuals +* Date/Publication: 2023-01-24 01:00:02 UTC +* Number of recursive dependencies: 38 + +Run `revdepcheck::cloud_details(, "utile.visuals")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘utile.visuals-Ex.R’ failed + The error most likely occurred in: + + > ### Name: append_table + > ### Title: Append a ggplot2 table to the bottom of a ggplot2 plot + > ### Aliases: append_table + > + > ### ** Examples + > + > library(survival) + ... + + aesthetics = c('colour', 'fill')) + + + theme_basic() + > + > # Risk Table + > tbl_risk <- ggrisktable(fit, c(0, 10, 20, 30, 40, 50)) + + + coord_cartesian(c(0, 50)) + + + scale_x_continuous(expand = c(0.02,0)) + + + theme_risk() + Error: Can't find property @hjust + Execution halted + ``` + +# vaccine + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/Avi-Kenny/vaccine +* Source code: https://github.com/cran/vaccine +* Date/Publication: 2025-01-07 18:00:01 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "vaccine")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(vaccine) + vaccine (version 1.3.0). + Type ?vaccine to get started. + > + > test_check("vaccine") + Loading required package: nnls + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-test-core-functions.R:320:3'): plot_ce ─────────────────────── + class(p) (`actual`) not equal to c("gg", "ggplot") (`expected`). + + `actual`: "ggplot" "ggplot2::ggplot" "ggplot2::gg" "S7_object" + `expected`: "gg" "ggplot" + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 165 ] + Error: Test failures + Execution halted + ``` + +# vaccineff + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/epiverse-trace/vaccineff +* Source code: https://github.com/cran/vaccineff +* Date/Publication: 2024-11-29 09:30:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "vaccineff")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + ... + `expected` is a character vector ('coverage * max(dose_plot)') + ── Failure ('test-utils_coverage.R:50:3'): `plot_coverage`: cumulative plot ──── + plt$labels$y (`actual`) not identical to "coverage * max(dose_plot)" (`expected`). + + `actual` is NULL + `expected` is a character vector ('coverage * max(dose_plot)') + + [ FAIL 2 | WARN 0 | SKIP 6 | PASS 100 ] + Error: Test failures + Execution halted + ``` + +# valr + +
+ +* Version: 0.8.3 +* GitHub: https://github.com/rnabioco/valr +* Source code: https://github.com/cran/valr +* Date/Publication: 2025-01-11 15:40:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "valr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test_glyph.r:13:3'): glyph labels are applied ───────────────────── + res$labels$label (`actual`) not equal to "id" (`expected`). + + `actual` is NULL + `expected` is a character vector ('id') + + [ FAIL 1 | WARN 0 | SKIP 4 | PASS 479 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 15.1Mb + sub-directories of 1Mb or more: + libs 13.9Mb + ``` + +# vangogh + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/cherylisabella/vangogh +* Source code: https://github.com/cran/vangogh +* Date/Publication: 2022-05-27 08:00:02 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "vangogh")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘vangogh.Rmd’ using rmarkdown + ``` + +# vanquish + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/vanquish +* Date/Publication: 2018-09-05 14:50:04 UTC +* Number of recursive dependencies: 32 + +Run `revdepcheck::cloud_details(, "vanquish")` for more info + +
+ +## Newly broken + +* checking whether package ‘vanquish’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘vanquish’ + See ‘/tmp/workdir/vanquish/new/vanquish.Rcheck/00install.out’ for details. + ``` + +# VarSelLCM + +
+ +* Version: 2.1.3.1 +* GitHub: NA +* Source code: https://github.com/cran/VarSelLCM +* Date/Publication: 2020-10-14 16:34:36 UTC +* Number of recursive dependencies: 61 + +Run `revdepcheck::cloud_details(, "VarSelLCM")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘VarSelLCM.Rmd’ using rmarkdown + + Quitting from VarSelLCM.Rmd:112-115 [unnamed-chunk-10] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error in `rep()`: + ! attempt to replicate an object of type 'object' + --- + Backtrace: + ... + + Error: processing vignette 'VarSelLCM.Rmd' failed with diagnostics: + attempt to replicate an object of type 'object' + --- failed re-building ‘VarSelLCM.Rmd’ + + SUMMARY: processing the following file failed: + ‘VarSelLCM.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 17.3Mb + sub-directories of 1Mb or more: + libs 16.5Mb + ``` + +# vayr + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/vayr +* Date/Publication: 2025-04-15 20:10:05 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "vayr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(vayr) + > + > test_check("vayr") + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 0 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + ── Failure ('test-position-circlepack.R:10:3'): position_circlepack works ────── + `g` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-position-jitter-ellipse.R:10:3'): jitter_ellipse works ─────── + `g` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + ── Failure ('test-position-sunflower.R:10:3'): position_sunflower works ──────── + `g` inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 3 | WARN 0 | SKIP 0 | PASS 0 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘vayr-vignette.Rmd’ using rmarkdown + + Quitting from vayr-vignette.Rmd:78-101 [contents_0] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'vayr-vignette.Rmd' failed with diagnostics: + Can't add `jitter_plot` to a object. + --- failed re-building ‘vayr-vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘vayr-vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# vDiveR + +
+ +* Version: 2.0.1 +* GitHub: NA +* Source code: https://github.com/cran/vDiveR +* Date/Publication: 2024-11-22 08:20:02 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "vDiveR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vDiveR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_conservation_level + > ### Title: Conservation Levels Distribution Plot + > ### Aliases: plot_conservation_level + > + > ### ** Examples + > + > plot_conservation_level(proteins_1host, conservation_label = 1,alpha=0.8, base_size = 15) + ... + 30. │ └─base::lapply(...) + 31. │ └─ggplot2 (local) FUN(X[[i]], ...) + 32. │ └─ggplot2 (local) apply_fun(cur_data) + 33. │ └─ggplot2 (local) fun(x, ...) + 34. └─base::.handleSimpleError(...) + 35. └─rlang (local) h(simpleError(msg, call)) + 36. └─handlers[[1L]](cnd) + 37. └─cli::cli_abort(...) + 38. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘maps’ + All declared Imports should be used. + ``` + +# vecmatch + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/Polymerase3/vecmatch +* Source code: https://github.com/cran/vecmatch +* Date/Publication: 2025-04-24 12:20:02 UTC +* Number of recursive dependencies: 124 + +Run `revdepcheck::cloud_details(, "vecmatch")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vecmatch-Ex.R’ failed + The error most likely occurred in: + + > ### Name: estimate_gps + > ### Title: Calculate treatment allocation probabilities + > ### Aliases: estimate_gps + > + > ### ** Examples + > + > + ... + 10.204348 9.695652 9.333333 8.927273 9.540000 + > + > # We can also investigate the imbalance using the raincloud function + > raincloud(filtered_air, + + y = Wind, + + group = Month, + + significance = "t_test" + + ) + Error: Can't get S7 properties with `$`. Did you mean `x_limits@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + ... + 34. │ └─base (local) withOneRestart(expr, restarts[[1L]]) + 35. │ └─base (local) doWithOneRestart(return(expr), restart) + 36. └─vctrs::stop_incompatible_type(...) + 37. └─vctrs:::stop_incompatible(...) + 38. └─vctrs:::stop_vctrs(...) + 39. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + + [ FAIL 10 | WARN 0 | SKIP 0 | PASS 207 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘vecmatch.Rmd’ using rmarkdown + + Quitting from vecmatch.Rmd:50-63 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `x_limits@layout`? + --- + Backtrace: + ... + + Error: processing vignette 'vecmatch.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `x_limits@layout`? + --- failed re-building ‘vecmatch.Rmd’ + + SUMMARY: processing the following file failed: + ‘vecmatch.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘MatchIt’ + ``` + +# vinereg + +
+ +* Version: 0.11.0 +* GitHub: https://github.com/tnagler/vinereg +* Source code: https://github.com/cran/vinereg +* Date/Publication: 2025-01-11 18:00:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "vinereg")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(vinereg) + > + > if (require(testthat)) test_check("vinereg") + Loading required package: testthat + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 61 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-generics.R:19:3'): plot_effects() ──────────────────────────── + plot_effects(fit, NA) inherits from 'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object' not 'gg'. + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 61 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 64.2Mb + sub-directories of 1Mb or more: + doc 1.4Mb + libs 62.6Mb + ``` + +# vip + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/koalaverse/vip +* Source code: https://github.com/cran/vip +* Date/Publication: 2023-08-21 09:20:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "vip")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > if (requireNamespace("tinytest", quietly = TRUE)) { + + home <- length(unclass(packageVersion("vip"))[[1L]]) == 4 + + tinytest::test_package("vip", at_home = home) + + } + + Attaching package: 'vip' + + ... + test_vip.R.................... 0 tests + test_vip.R.................... 1 tests OK + test_vip.R.................... 2 tests OK + test_vip.R.................... 3 tests OK 9ms + ----- FAILED[data]: test_pkg_nnet.R<47--50> + call| expect_identical(current = class(p), target = c("gg", "ggplot")) + diff| Lengths (2, 4) differ (string compare on first 2) + diff| 2 string mismatches + Error: 1 out of 25 tests failed + Execution halted + ``` + +## In both + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'C50', 'caret', 'Cubist', 'earth', 'gbm', 'glmnet', 'h2o', + 'lightgbm', 'mixOmics', 'mlr', 'mlr3', 'neuralnet', 'parsnip', + 'partykit', 'pls', 'randomForest', 'ranger', 'RSNNS', 'sparklyr', + 'tidymodels', 'workflows', 'xgboost' + ``` + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘randomForest’, ‘glmnet’, ‘C50’, ‘Cubist’, ‘caret’, ‘partykit’, ‘earth’, ‘gbm’, ‘h2o’, ‘sparklyr’, ‘ranger’, ‘xgboost’, ‘lightgbm’ + ``` + +# viscomp + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/georgiosseitidis/viscomp +* Source code: https://github.com/cran/viscomp +* Date/Publication: 2023-01-16 09:50:02 UTC +* Number of recursive dependencies: 140 + +Run `revdepcheck::cloud_details(, "viscomp")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘viscomp-Ex.R’ failed + The error most likely occurred in: + + > ### Name: heatcomp + > ### Title: Components Heat Plot + > ### Aliases: heatcomp + > + > ### ** Examples + > + > data(nmaMACE) + ... + 7. └─base_ops[[.Generic]](e1, e2) + 8. ├─S7::S7_dispatch() + 9. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 10. └─ggplot2:::add_ggplot(e1, e2, e2name) + 11. └─ggplot2::ggplot_add(object, p, objectname) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 14. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 15. └─rlang::abort(...) + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘viscomp.Rmd’ using rmarkdown + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) compdesc.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) compdesc.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) compdesc.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) compdesc.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) compdesc.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) compdesc.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) compdesc.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) compdesc.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) compdesc.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# visdat + +
+ +* Version: 0.6.0 +* GitHub: https://github.com/ropensci/visdat +* Source code: https://github.com/cran/visdat +* Date/Publication: 2023-02-02 03:10:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "visdat")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(visdat) + > + > test_check("visdat") + + Attaching package: 'dplyr' + ... + • vis-miss/vis-miss-list.svg + • vis-miss/vis-miss-no-show-percent-in-columns.svg + • vis-miss/vis-miss-show-percent-in-columns.svg + • vis-miss/vis-miss-show-percent.svg + • vis-miss/vis-miss-sort-rows.svg + • vis-miss/vis-miss-vanilla.svg + • vis-value/vis-value-constant.svg + • vis-value/vis-value-vanilla.svg + Error: Test failures + Execution halted + ``` + +# ViSiElse + +
+ +* Version: 1.2.2 +* GitHub: https://github.com/Re2SimLab/ViSiElse +* Source code: https://github.com/cran/ViSiElse +* Date/Publication: 2019-10-24 20:00:11 UTC +* Number of recursive dependencies: 54 + +Run `revdepcheck::cloud_details(, "ViSiElse")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ViSiElSe_Paper_Walkthrough.Rmd’ using rmarkdown + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘ggplot2’ ‘reshape2’ + All declared Imports should be used. + ``` + +* checking Rd files ... NOTE + ``` + checkRd: (-1) ViSiElse.Rd:101-107: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSiElse.Rd:102: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSiElse.Rd:103: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSiElse.Rd:104: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSiElse.Rd:105-106: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSiElse.Rd:108-127: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSiElse.Rd:112-113: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSiElse.Rd:114-115: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSiElse.Rd:116: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSiElse.Rd:128-134: Lost braces in \itemize; meant \describe ? + ... + checkRd: (-1) ViSiElse.Rd:152-153: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSiElse.Rd:154-155: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSibook-class.Rd:24: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSibook-class.Rd:25: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSibook-class.Rd:29: Lost braces in \itemize; meant \describe ? + checkRd: (-1) ViSibook-class.Rd:30: Lost braces in \itemize; meant \describe ? + checkRd: (-1) dim-ViSibook-methods.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) dim-ViSibook-methods.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) summary-ViSigrid-methods.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly + checkRd: (-1) summary-ViSigrid-methods.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly + ``` + +# visualpred + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/visualpred +* Date/Publication: 2024-11-07 12:30:02 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "visualpred")` for more info + +
+ +## Newly broken + +* checking whether package ‘visualpred’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘visualpred’ + See ‘/tmp/workdir/visualpred/new/visualpred.Rcheck/00install.out’ for details. + ``` + +# visxhclust + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/rhenkin/visxhclust +* Source code: https://github.com/cran/visxhclust +* Date/Publication: 2023-03-17 12:10:02 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "visxhclust")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘visxhclust-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot_annotation_dist + > ### Title: Plot distribution of annotation data across clusters + > ### Aliases: plot_annotation_dist + > + > ### ** Examples + > + > dmat <- compute_dmat(iris, "euclidean", TRUE, c("Petal.Length", "Sepal.Length")) + ... + 10. └─base_ops[[.Generic]](e1, e2) + 11. ├─S7::S7_dispatch() + 12. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 13. └─ggplot2:::add_ggplot(e1, e2, e2name) + 14. └─ggplot2::ggplot_add(object, p, objectname) + 15. ├─S7::S7_dispatch() + 16. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 17. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(visxhclust) + > + > test_check("visxhclust") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 78 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 19. └─ggplot2:::add_ggplot(e1, e2, e2name) + 20. └─ggplot2::ggplot_add(object, p, objectname) + 21. ├─S7::S7_dispatch() + 22. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 23. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 24. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 78 ] + Error: Test failures + Execution halted + ``` + +# vital + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/robjhyndman/vital +* Source code: https://github.com/cran/vital +* Date/Publication: 2024-06-21 08:00:02 UTC +* Number of recursive dependencies: 199 + +Run `revdepcheck::cloud_details(, "vital")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vital-Ex.R’ failed + The error most likely occurred in: + + > ### Name: FDM + > ### Title: Functional data model + > ### Aliases: FDM report.FDM + > + > ### ** Examples + > + > hu <- norway_mortality |> + ... + 12. └─base_ops[[.Generic]](e1, e2) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 15. └─ggplot2:::add_ggplot(e1, e2, e2name) + 16. └─ggplot2::ggplot_add(object, p, objectname) + 17. ├─S7::S7_dispatch() + 18. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 19. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(vital) + > library(dplyr) + + Attaching package: 'dplyr' + + The following object is masked from 'package:testthat': + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-LC.R:99:3'): Lee Carter ────────────────────────────────────── + Expected `autoplot(model(aus_fertility, LC(log(Fertility))))` to run without any errors. + ℹ Actually got a with text: + Can't add `x[[i]]` to a object. + + [ FAIL 1 | WARN 5 | SKIP 0 | PASS 106 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 9.7Mb + sub-directories of 1Mb or more: + data 8.0Mb + help 1.3Mb + ``` + +# vivainsights + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/microsoft/vivainsights +* Source code: https://github.com/cran/vivainsights +* Date/Publication: 2025-05-12 11:10:02 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "vivainsights")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vivainsights-Ex.R’ failed + The error most likely occurred in: + + > ### Name: network_g2g + > ### Title: Create a network plot with the group-to-group query + > ### Aliases: network_g2g + > + > ### ** Examples + > + > # Return a network plot + ... + Backtrace: + ▆ + 1. ├─g2g_data %>% network_g2g() + 2. └─vivainsights::network_g2g(.) + 3. └─ggraph::geom_edge_link(aes(edge_width = metric_prop * 1), edge_alpha = 0.5, edge_colour = "grey") + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 1. ├─vivainsights::create_hist(...) at test_create_hist.R:34:3 + 2. │ ├─... %>% group_split(PANEL) + 3. │ ├─ggplot2::ggplot_build(plot_object)$data + 4. │ └─S7:::`$.S7_object`(ggplot2::ggplot_build(plot_object), data) + 5. ├─dplyr::group_split(., PANEL) + 6. └─dplyr::select(., group, PANEL, x, xmin, xmax, y) + + [ FAIL 2 | WARN 79 | SKIP 0 | PASS 50 ] + Error: Test failures + Execution halted + ``` + +# vivaldi + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/GreshamLab/vivaldi +* Source code: https://github.com/cran/vivaldi +* Date/Publication: 2023-03-21 20:10:02 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "vivaldi")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vivaldi-Ex.R’ failed + The error most likely occurred in: + + > ### Name: snv_location + > ### Title: snv_location + > ### Aliases: snv_location + > + > ### ** Examples + > + > # Example 1: + ... + 6 m2 PB1 234 G A minor 0.010 0.990 + 7 m2 PB1 266 G A minor 0.022 0.978 + 8 m2 PB2 199 A G minor 0.043 0.957 + 9 m2 PB2 88 G A major 0.055 0.945 + 10 m2 PB2 180 C T minor 0.011 0.989 + > + > snv_location(df) + Error in pm[[2]] : subscript out of bounds + Calls: snv_location -> -> ggplotly.ggplot -> gg2list + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-snv_location.R:13:3'): expect output ───────────────────────── + Expected `snv_location(df)` to run without any errors. + i Actually got a with text: + subscript out of bounds + + [ FAIL 1 | WARN 2 | SKIP 0 | PASS 28 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘vignette.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.8Mb + sub-directories of 1Mb or more: + doc 5.4Mb + extdata 1.1Mb + ``` + +# vivid + +
+ +* Version: 0.2.9 +* GitHub: NA +* Source code: https://github.com/cran/vivid +* Date/Publication: 2024-07-31 11:50:02 UTC +* Number of recursive dependencies: 234 + +Run `revdepcheck::cloud_details(, "vivid")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vivid-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pdpPairs + > ### Title: pdpPairs + > ### Aliases: pdpPairs + > + > ### ** Examples + > + > # Load in the data: + ... + > f <- lm(Ozone ~ ., data = aq) + > pdpPairs(aq, f, "Ozone") + Generating ice/pdp fits... waiting... + Finished ice/pdp + Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0. + ℹ Please use the `linewidth` argument instead. + ℹ The deprecated feature was likely used in the vivid package. + Please report the issue to the authors. + Error: C stack usage 9964212 is too close to the limit + Execution halted + ``` + +# vivo + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/ModelOriented/vivo +* Source code: https://github.com/cran/vivo +* Date/Publication: 2020-09-07 11:00:02 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "vivo")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(vivo) + > + > test_check("vivo") + Preparation of a new explainer is initiated + -> model label : randomForest (  default  ) + -> data : 9000 rows 4 cols + ... + ── Failure ('test_plot.R:101:3'): plotGlobalMeasure4 ─────────────────────────── + plot(measure_pdp, variables = c("surface", "floor")) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_plot.R:105:3'): plotGlobalMeasure5 ─────────────────────────── + plot(measure_pdp, measure_pdp_lm, variables = c("surface", "floor")) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + ── Failure ('test_plot.R:126:3'): plotGlobalMeasure9 ─────────────────────────── + plot(...) inherits from `'ggplot'/'ggplot2::ggplot'/'ggplot2::gg'/'S7_object'` not `'character'`. + + [ FAIL 13 | WARN 3 | SKIP 0 | PASS 35 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking LazyData ... NOTE + ``` + 'LazyData' is specified without a 'data' directory + ``` + +# VizTest + +
+ +* Version: 0.3 +* GitHub: NA +* Source code: https://github.com/cran/VizTest +* Date/Publication: 2025-03-12 17:40:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "VizTest")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘viztest_intro.Rmd’ using rmarkdown + + Quitting from viztest_intro.Rmd:231-236 [reg-plot-both] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'viztest_intro.Rmd' failed with diagnostics: + Can't add `(f2 + ggtitle("B) plot() Output with 95% CI Included") + + theme(plot.title.position = "plot"))` to a object. + --- failed re-building ‘viztest_intro.Rmd’ + + SUMMARY: processing the following file failed: + ‘viztest_intro.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# VLTimeCausality + +
+ +* Version: 0.1.5 +* GitHub: https://github.com/DarkEyes/VLTimeSeriesCausality +* Source code: https://github.com/cran/VLTimeCausality +* Date/Publication: 2024-05-28 04:20:02 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "VLTimeCausality")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘VLTimeCausality-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plotTimeSeries + > ### Title: plotTimeSeries + > ### Aliases: plotTimeSeries + > + > ### ** Examples + > + > # Generate simulation data + > TS <- SimpleSimulationVLtimeseries() + > # Run the function + > plotTimeSeries(Y=TS$Y,X=TS$X) + Error: Can't find property @i + Execution halted + ``` + +# voiceR + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/voiceR +* Date/Publication: 2023-09-12 20:30:02 UTC +* Number of recursive dependencies: 190 + +Run `revdepcheck::cloud_details(, "voiceR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘voiceR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: comparisonPlots + > ### Title: Create boxplots for extracted audio features + > ### Aliases: comparisonPlots + > + > ### ** Examples + > + > comparisonPlots(testAudioData, by = "Condition") + Error: Can't get S7 properties with `$`. Did you mean `ggplotData@data`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 4. └─(function() {... + 5. ├─ggplot2::annotate(...) + 6. │ └─ggplot2:::compact(...) + 7. │ └─base::vapply(x, is.null, logical(1)) + 8. ├─p1Params$layout + 9. └─S7:::`$.S7_object`(p1Params, "layout") + + [ FAIL 3 | WARN 2 | SKIP 0 | PASS 26 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.0Mb + sub-directories of 1Mb or more: + Audios 1.1Mb + data 6.5Mb + ``` + +# volker + +
+ +* Version: 3.1.0 +* GitHub: https://github.com/strohne/volker +* Source code: https://github.com/cran/volker +* Date/Publication: 2025-04-05 20:50:02 UTC +* Number of recursive dependencies: 163 + +Run `revdepcheck::cloud_details(, "volker")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘volker-Ex.R’ failed + The error most likely occurred in: + + > ### Name: cluster_plot + > ### Title: Get plot for clustering result + > ### Aliases: cluster_plot + > ### Keywords: internal + > + > ### ** Examples + > + > library(volker) + > data <- volker::chatgpt + > + > cluster_plot(data, starts_with("cg_adoption"), k = 2) + Error: Can't get S7 properties with `$`. Did you mean `plot_data@layout`? + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + i Actually got a with text: + Can't get S7 properties with `$`. Did you mean `plot_data@data`? + ── Failure ('test-selections.R:69:3'): Starts with column selections work ────── + Expected `volker::plot_counts(data, tidyselect::starts_with("use_"))` to run without any errors. + i Actually got a with text: + Can't get S7 properties with `$`. Did you mean `plot_data@data`? + + [ FAIL 11 | WARN 0 | SKIP 8 | PASS 120 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘introduction.Rmd’ using rmarkdown + + Quitting from introduction.Rmd:169-173 [unnamed-chunk-13] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't get S7 properties with `$`. Did you mean `plot_data@layout`? + --- + Backtrace: + ... + + Error: processing vignette 'introduction.Rmd' failed with diagnostics: + Can't get S7 properties with `$`. Did you mean `plot_data@layout`? + --- failed re-building ‘introduction.Rmd’ + + SUMMARY: processing the following file failed: + ‘introduction.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# voluModel + +
+ +* Version: 0.2.2 +* GitHub: https://github.com/hannahlowens/voluModel +* Source code: https://github.com/cran/voluModel +* Date/Publication: 2024-08-20 22:50:01 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "voluModel")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘voluModel-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pointCompMap + > ### Title: Comparative point mapping + > ### Aliases: pointCompMap + > ### Keywords: plotting + > + > ### ** Examples + > + ... + 7. └─ggplot2 (local) setup(..., self = self) + 8. └─self$coord$setup_params(data) + 9. └─ggplot2 (local) setup_params(..., self = self) + 10. └─ggproto_parent(Coord, self)$setup_params(data) + 11. └─ggplot2 (local) setup_params(..., self = self) + 12. └─ggplot2:::parse_coord_expand(expand = self$expand %||% TRUE) + 13. └─ggplot2:::check_logical(expand) + 14. └─ggplot2:::stop_input_type(...) + 15. └─rlang::abort(message, ..., call = call, arg = arg) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(voluModel) + > + > test_check("voluModel") + terra 1.8.50 + + Attaching package: 'terra' + ... + 9. ├─ggplot2::theme(...) + 10. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL) + 11. │ └─base::mget(args, envir = env) + 12. └─ggplot2::element_text(colour = 1, size = 12) + 13. └─S7::new_object(...) + 14. └─S7::validate(object, recursive = !parent_validated) + + [ FAIL 1 | WARN 9 | SKIP 2 | PASS 245 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘a_Introduction.Rmd’ using rmarkdown + + Quitting from a_Introduction.Rmd:43-58 [show points] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'a_Introduction.Rmd' failed with diagnostics: + `expand` must be a logical vector, not the number 0.05. + --- failed re-building ‘a_Introduction.Rmd’ + + --- re-building ‘b_RasterProcessing.Rmd’ using rmarkdown + ``` + +# voteogram + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/hrbrmstr/voteogram +* Source code: https://github.com/cran/voteogram +* Date/Publication: 2023-03-08 12:20:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "voteogram")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Complete output: + > library(testthat) + > test_check("voteogram") + Loading required package: voteogram + [ FAIL 2 | WARN 0 | SKIP 1 | PASS 3 ] + + ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ + • On CRAN (1): 'test-voteogram.R:22:3' + ... + `x` inherits from `'ggplot2::theme'/'gg'/'S7_object'` not `'character'`. + Backtrace: + ▆ + 1. └─testthat::expect_that(t2, is_a("theme")) at test-voteogram.R:8:3 + 2. └─testthat (local) condition(object) + 3. └─testthat::expect_is(x, class) + + [ FAIL 2 | WARN 0 | SKIP 1 | PASS 3 ] + Error: Test failures + Execution halted + ``` + +# vroom + +
+ +* Version: 1.6.5 +* GitHub: https://github.com/tidyverse/vroom +* Source code: https://github.com/cran/vroom +* Date/Publication: 2023-12-05 23:50:02 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "vroom")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘benchmarks.Rmd’ using rmarkdown + + Quitting from benchmarks.Rmd:213-219 [unnamed-chunk-2] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + NULL + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: processing vignette 'benchmarks.Rmd' failed with diagnostics: + ... + --- failed re-building ‘benchmarks.Rmd’ + + --- re-building ‘vroom.Rmd’ using rmarkdown + --- finished re-building ‘vroom.Rmd’ + + SUMMARY: processing the following file failed: + ‘benchmarks.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 18.5Mb + sub-directories of 1Mb or more: + libs 16.9Mb + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘readr’ + ``` + +# vvshiny + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/vvshiny +* Date/Publication: 2023-07-19 15:30:02 UTC +* Number of recursive dependencies: 134 + +Run `revdepcheck::cloud_details(, "vvshiny")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vvshiny-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggplotly_with_legend + > ### Title: Make ggplotly and add legend with color as title + > ### Aliases: ggplotly_with_legend + > + > ### ** Examples + > + > df <- data.frame(x_var = rnorm(100), + ... + > xlab_setting <- ggplot2::xlab("x label") + > ylab_setting <- ggplot2::ylab("y label") + > ggplot_instellingen <- ggplot2::geom_point() + > scale_y <- ggplot2::scale_y_continuous() + > plot <- basic_plot(df, "x_var", "y_var", "color_var", xlab_setting, + + ylab_setting, ggplot_instellingen, "none", scale_y) + > mapping_table <- list(color_var = "user friendly name var") + > plotly_object <- ggplotly_with_legend(plot, "color_var", mapping_table) + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ▆ + 1. ├─testthat::expect_null(ggplot2::ggplot_build(p)$data[[1]]$name) at test-ggplotly_with_legend.R:12:3 + 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") + 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) + 4. ├─ggplot2::ggplot_build(p)$data + 5. └─S7:::`$.S7_object`(ggplot2::ggplot_build(p), data) + + [ FAIL 3 | WARN 4 | SKIP 0 | PASS 57 ] + Error: Test failures + Execution halted + ``` + +# washi + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/WA-Department-of-Agriculture/washi +* Source code: https://github.com/cran/washi +* Date/Publication: 2023-09-07 23:50:02 UTC +* Number of recursive dependencies: 86 + +Run `revdepcheck::cloud_details(, "washi")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + `expected`: 0.0 + ── Failure ('test-theme.R:31:3'): washi_theme() works ────────────────────────── + length(theme$panel.grid.major.y) (`actual`) not equal to 0 (`expected`). + + `actual`: 1.0 + `expected`: 0.0 + + [ FAIL 2 | WARN 4 | SKIP 5 | PASS 13 ] + Error: Test failures + Execution halted + ``` + +# webSDM + +
+ +* Version: 1.1-5 +* GitHub: https://github.com/giopogg/webSDM +* Source code: https://github.com/cran/webSDM +* Date/Publication: 2024-06-24 12:10:02 UTC +* Number of recursive dependencies: 194 + +Run `revdepcheck::cloud_details(, "webSDM")` for more info + +
+ +## Newly broken + +* checking whether package ‘webSDM’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/webSDM/new/webSDM.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘webSDM’ ... +** package ‘webSDM’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: .onLoad failed in loadNamespace() for 'rstan', details: + call: NULL + error: C stack usage 9963540 is too close to the limit +Execution halted +ERROR: lazy loading failed for package ‘webSDM’ +* removing ‘/tmp/workdir/webSDM/new/webSDM.Rcheck/webSDM’ + + +``` +### CRAN + +``` +* installing *source* package ‘webSDM’ ... +** package ‘webSDM’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (webSDM) + + +``` +# whippr + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/fmmattioni/whippr +* Source code: https://github.com/cran/whippr +* Date/Publication: 2024-02-19 08:00:02 UTC +* Number of recursive dependencies: 203 + +Run `revdepcheck::cloud_details(, "whippr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(whippr) + > + > test_check("whippr") + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 12 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + p2 <- .data %>% dplyr::filter(transition == .x) %>% ggplot2::ggplot(ggplot2::aes(x, + .resid)) + ggplot2::geom_line(alpha = 0.4) + theme_whippr() + patchwork::wrap_plots(p1, p2, ncol = 1, heights = c(8, 1)) + })`: ℹ In index: 1. + Caused by error in `method(ggplot_add, list(class_any, ggplot2::ggplot))`: + ! Can't add `x[[i]]` to a object. + + [ FAIL 2 | WARN 0 | SKIP 0 | PASS 12 ] + Error: Test failures + Execution halted + ``` + +# widyr + +
+ +* Version: 0.1.5 +* GitHub: https://github.com/juliasilge/widyr +* Source code: https://github.com/cran/widyr +* Date/Publication: 2022-09-13 08:10:02 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "widyr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘intro.Rmd’ using rmarkdown + --- finished re-building ‘intro.Rmd’ + + --- re-building ‘united_nations.Rmd’ using rmarkdown + ``` + +# wilson + +
+ +* Version: 2.4.2 +* GitHub: https://github.com/loosolab/wilson +* Source code: https://github.com/cran/wilson +* Date/Publication: 2021-04-19 09:40:02 UTC +* Number of recursive dependencies: 203 + +Run `revdepcheck::cloud_details(, "wilson")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(wilson) + + Attaching package: 'wilson' + + The following object is masked from 'package:stats': + + ... + Backtrace: + ▆ + 1. └─wilson::create_geneview(...) at test-interactive-plots.R:21:3 + 2. ├─plotly::ggplotly(...) + 3. └─plotly:::ggplotly.ggplot(...) + 4. └─plotly::gg2list(...) + + [ FAIL 3 | WARN 11 | SKIP 1 | PASS 74 ] + Error: Test failures + Execution halted + ``` + +# windfarmGA + +
+ +* Version: 4.0.0 +* GitHub: https://github.com/YsoSirius/windfarmGA +* Source code: https://github.com/cran/windfarmGA +* Date/Publication: 2025-01-18 11:00:02 UTC +* Number of recursive dependencies: 116 + +Run `revdepcheck::cloud_details(, "windfarmGA")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + `expected`: TRUE + ── Failure ('test_plots.R:126:3'): Test Plotting Functions ───────────────────── + class(windr_res)[1] == "gg" is not TRUE + + `actual`: FALSE + `expected`: TRUE + + [ FAIL 2 | WARN 0 | SKIP 2 | PASS 703 ] + Error: Test failures + Execution halted + ``` + +# wordpredictor + +
+ +* Version: 0.0.5 +* GitHub: https://github.com/pakjiddat/word-predictor +* Source code: https://github.com/cran/wordpredictor +* Date/Publication: 2024-10-08 16:20:02 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "wordpredictor")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘wordpredictor-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ModelEvaluator + > ### Title: Evaluates performance of n-gram models + > ### Aliases: ModelEvaluator + > + > ### ** Examples + > + > + ... + 8. └─base_ops[[.Generic]](e1, e2) + 9. ├─S7::S7_dispatch() + 10. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(wordpredictor) + > + > test_check("wordpredictor") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 119 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ... + 11. └─ggplot2:::add_ggplot(e1, e2, e2name) + 12. └─ggplot2::ggplot_add(object, p, objectname) + 13. ├─S7::S7_dispatch() + 14. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 15. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 16. └─rlang::abort(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 119 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘features.Rmd’ using rmarkdown + --- finished re-building ‘features.Rmd’ + + --- re-building ‘overview.Rmd’ using rmarkdown + Error reading bibliography file references.bib: + (line 56, column 16): + unexpected 't' + Error: processing vignette 'overview.Rmd' failed with diagnostics: + pandoc document conversion failed with error 25 + --- failed re-building ‘overview.Rmd’ + + SUMMARY: processing the following file failed: + ‘overview.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# wpa + +
+ +* Version: 1.9.1 +* GitHub: https://github.com/microsoft/wpa +* Source code: https://github.com/cran/wpa +* Date/Publication: 2024-06-06 13:20:02 UTC +* Number of recursive dependencies: 121 + +Run `revdepcheck::cloud_details(, "wpa")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘wpa-Ex.R’ failed + The error most likely occurred in: + + > ### Name: network_g2g + > ### Title: Create a network plot with the group-to-group query + > ### Aliases: network_g2g g2g_network + > + > ### ** Examples + > + > # Return a network plot + ... + Backtrace: + ▆ + 1. ├─g2g_data %>% network_g2g() + 2. └─wpa::network_g2g(.) + 3. └─ggraph::geom_edge_link(aes(edge_width = metric_prop * 1), edge_alpha = 0.5, edge_colour = "grey") + 4. └─ggplot2::layer(...) + 5. └─ggplot2:::validate_mapping(mapping, call_env) + 6. └─cli::cli_abort(msg, call = call) + 7. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/tests.html + > # * https://testthat.r-lib.org/reference/test_package.html#special-files + ... + 3. │ └─plot_data_long %>% ... + 4. └─wpa::plot_hourly_pat(...) + 5. └─ggplot2::scale_fill_continuous(...) + 6. └─ggplot2:::scale_backward_compatibility(...) + 7. └─cli::cli_abort("Unknown scale type: {.val {scale}}") + 8. └─rlang::abort(...) + + [ FAIL 1 | WARN 250 | SKIP 0 | PASS 9 ] + Error: Test failures + Execution halted + ``` + +# wql + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/jsta/wql +* Source code: https://github.com/cran/wql +* Date/Publication: 2025-01-23 10:10:02 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "wql")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘wql-Ex.R’ failed + The error most likely occurred in: + + > ### Name: eofNum + > ### Title: Plot EOF percent variance + > ### Aliases: eofNum + > ### Keywords: Graphics ts + > + > ### ** Examples + > + > + > # Create an annual time series data matrix from sfbay chlorophyll data + > # Average over each year + > chla1 <- aggregate(sfbayChla, 1, mean, na.rm = TRUE) + > chla1 <- chla1[, 1:12] # remove stations with missing years + > eofNum(chla1) + Error: object is invalid: + - every label must be named. + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘wql-package.Rmd’ using rmarkdown + ``` + +# WRS2 + +
+ +* Version: 1.1-6 +* GitHub: NA +* Source code: https://github.com/cran/WRS2 +* Date/Publication: 2024-03-15 08:36:23 UTC +* Number of recursive dependencies: 110 + +Run `revdepcheck::cloud_details(, "WRS2")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘WRS2.Rnw’ using knitr + + Quitting from WRS2.Rnw:193-195 [cor-plot1] + Error: processing vignette 'WRS2.Rnw' failed with diagnostics: + C stack usage 9961540 is too close to the limit + --- failed re-building ‘WRS2.Rnw’ + + SUMMARY: processing the following file failed: + ‘WRS2.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## Newly fixed + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘WRS2.Rnw’ using knitr + Error: processing vignette 'WRS2.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'WRS2.tex' failed. + LaTeX errors: + ! LaTeX Error: File `thumbpdf.sty' not found. + + Type X to quit or to proceed, + or enter new name. (Default extension: sty) + ... + l.20 \usepackage + {float,amssymb}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘WRS2.Rnw’ + + SUMMARY: processing the following file failed: + ‘WRS2.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# WRTDStidal + +
+ +* Version: 1.1.4 +* GitHub: https://github.com/fawda123/WRTDStidal +* Source code: https://github.com/cran/WRTDStidal +* Date/Publication: 2023-10-20 09:00:11 UTC +* Number of recursive dependencies: 140 + +Run `revdepcheck::cloud_details(, "WRTDStidal")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘WRTDStidal-Ex.R’ failed + The error most likely occurred in: + + > ### Name: wtsplot + > ### Title: Plot the weights for an observation + > ### Aliases: wtsplot wtsplot.default wtsplot.tidal wtsplot.tidalmean + > + > ### ** Examples + > + > + > ## load a fitted tidal object + > data(tidfit) + > + > ## plot using defaults, + > wtsplot(tidfit) + Error in as.vector(x, "character") : + cannot coerce type 'object' to vector of type 'character' + Calls: wtsplot ... validDetails.text -> as.character -> as.character.default + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘overview.Rmd’ using rmarkdown + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.8Mb + sub-directories of 1Mb or more: + data 2.0Mb + doc 4.3Mb + ``` + +# xaringanthemer + +
+ +* Version: 0.4.3 +* GitHub: https://github.com/gadenbuie/xaringanthemer +* Source code: https://github.com/cran/xaringanthemer +* Date/Publication: 2024-09-15 14:00:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "xaringanthemer")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘ggplot2-themes.Rmd’ using rmarkdown + ``` + +# xdvir + +
+ +* Version: 0.1-2 +* GitHub: NA +* Source code: https://github.com/cran/xdvir +* Date/Publication: 2025-02-24 17:00:02 UTC +* Number of recursive dependencies: 53 + +Run `revdepcheck::cloud_details(, "xdvir")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘xdvir-intro.Rmd’ using rmarkdown + ``` + +## Newly fixed + +* checking tests ... ERROR + ``` + Running ‘author.R’ + Running ‘dpi.R’ + Running ‘dvi.R’ + Comparing ‘dvi.Rout’ to ‘dvi.Rout.save’ ... OK + Running ‘fontspec.R’ + Running the tests in ‘tests/fontspec.R’ failed. + Complete output: + > + > library(grid) + > library(xdvir) + ... + (revision 75260 of texlive-scripts); + please use a different mirror and/or wait a day or two. + + ! LaTeX Error: File `varwidth.sty' not found. + + ! Emergency stop. + + + Error: LaTeX failed to compile test-fontspec.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See ./test-fontspec.log for more info. + Execution halted + ``` + +# xkcd + +
+ +* Version: 0.0.6 +* GitHub: NA +* Source code: https://github.com/cran/xkcd +* Date/Publication: 2018-07-11 15:30:02 UTC +* Number of recursive dependencies: 67 + +Run `revdepcheck::cloud_details(, "xkcd")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘xkcd-Ex.R’ failed + The error most likely occurred in: + + > ### Name: xkcdline + > ### Title: Draw lines or circunferences + > ### Aliases: xkcdline + > ### Keywords: manip + > + > ### ** Examples + > + ... + 1. └─xkcd::xkcdline(...) + 2. └─base::lapply(...) + 3. └─xkcd (local) FUN(X[[i]], ...) + 4. ├─base::do.call("geom_path", argList) + 5. └─ggplot2::geom_path(...) + 6. └─ggplot2::layer(...) + 7. └─ggplot2:::validate_mapping(mapping, call_env) + 8. └─cli::cli_abort(msg, call = call) + 9. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘xkcd-intro.Rnw’ using Sweave + Error: processing vignette 'xkcd-intro.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'xkcd-intro.tex' failed. + LaTeX errors: + ! LaTeX Error: File `caption.sty' not found. + + Type X to quit or to proceed, + or enter new name. (Default extension: sty) + ... + l.12 \usepackage + {subcaption}^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘xkcd-intro.Rnw’ + + SUMMARY: processing the following file failed: + ‘xkcd-intro.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# xpose + +
+ +* Version: 0.4.19 +* GitHub: https://github.com/UUPharmacometrics/xpose +* Source code: https://github.com/cran/xpose +* Date/Publication: 2025-01-07 20:00:02 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "xpose")` for more info + +
+ +## Newly broken + +* checking whether package ‘xpose’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/xpose/new/xpose.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘xpose’ ... +** package ‘xpose’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +Error in get("print.ggplot", envir = asNamespace("ggplot2")) : + object 'print.ggplot' not found +Warning: namespace ‘xpose’ is not available and has been replaced +by .GlobalEnv when processing object ‘xpdb_ex_pk’ +... +Warning: namespace ‘xpose’ is not available and has been replaced +by .GlobalEnv when processing object ‘xpdb_ex_pk’ +** inst +** byte-compile and prepare package for lazy loading +Error in get("print.ggplot", envir = asNamespace("ggplot2")) : + object 'print.ggplot' not found +Error: unable to load R code in package ‘xpose’ +Execution halted +ERROR: lazy loading failed for package ‘xpose’ +* removing ‘/tmp/workdir/xpose/new/xpose.Rcheck/xpose’ + + +``` +### CRAN + +``` +* installing *source* package ‘xpose’ ... +** package ‘xpose’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (xpose) + + +``` +# xpose.xtras + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/jprybylski/xpose.xtras +* Source code: https://github.com/cran/xpose.xtras +* Date/Publication: 2024-11-21 17:20:02 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "xpose.xtras")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘xpose.xtras-Ex.R’ failed + The error most likely occurred in: + + > ### Name: catdv_vs_dvprobs + > ### Title: Non-simulation based likelihood model diagnostic + > ### Aliases: catdv_vs_dvprobs + > + > ### ** Examples + > + > + ... + + # Set probs + + set_dv_probs(1, 1~LIKE, .dv_var = BLQ) %>% + + # Optional, but useful to set levels + + set_var_levels(1, BLQ = lvl_bin()) %>% + + # Plot with basic xlab makes no assumptions + + catdv_vs_dvprobs(xlab = "basic") + Using data from $prob no.1 + Filtering data by EVID == 0 + Error: Can't find property @i + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + 2. │ └─xpose::xplot_scatter(...) + 3. │ ├─base::`$<-`(`*tmp*`, "xpose", value = ``) + 4. │ └─ggplot2:::`$<-.ggplot2::gg`(`*tmp*`, "xpose", value = ``) + 5. │ └─S7::`props<-`(`*tmp*`, value = `$<-`(S7::props(x), i, value)) + 6. │ └─S7::`prop<-`(`*tmp*`, name, check = FALSE, value = value[[name]]) + 7. └─S7 (local) ``("Can't find property %s@%s", ``, "i") + + [ FAIL 31 | WARN 0 | SKIP 4 | PASS 503 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘a01-the-xp_xtra-object.Rmd’ using rmarkdown + + Quitting from a01-the-xp_xtra-object.Rmd:94-96 [plot_cont] + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + Error: + ! Can't find property @i + --- + Backtrace: + ... + Error: processing vignette 'a03-useful_plots.Rmd' failed with diagnostics: + Can't find property @i + --- failed re-building ‘a03-useful_plots.Rmd’ + + SUMMARY: processing the following files failed: + ‘a01-the-xp_xtra-object.Rmd’ ‘a02-xpose-sets.Rmd’ + ‘a03-useful_plots.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 7.9Mb + sub-directories of 1Mb or more: + data 2.5Mb + doc 2.4Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 2 marked UTF-8 strings + ``` + +# xray + +
+ +* Version: 0.2 +* GitHub: https://github.com/sicarul/xray +* Source code: https://github.com/cran/xray +* Date/Publication: 2017-12-08 05:15:59 UTC +* Number of recursive dependencies: 35 + +Run `revdepcheck::cloud_details(, "xray")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘xray-Ex.R’ failed + The error most likely occurred in: + + > ### Name: distributions + > ### Title: Analyze each variable and generate a histogram describing it's + > ### distribution. + > ### Aliases: distributions + > + > ### ** Examples + > + > library(xray) + > distributions(mtcars) + ================================================================================Error in { : + task 1 failed - "`type` must be a character vector or list of character vectors, not `NULL`." + Calls: distributions -> %do% -> + Execution halted + ``` + +# xvm + +
+ +* Version: 0.0.2 +* GitHub: https://github.com/RightSZ/xvm +* Source code: https://github.com/cran/xvm +* Date/Publication: 2025-04-30 13:30:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "xvm")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + --- re-building ‘xpm_file.Rmd’ using rmarkdown + ``` + +# yamlet + +
+ +* Version: 1.2.1 +* GitHub: https://github.com/bergsmat/yamlet +* Source code: https://github.com/cran/yamlet +* Date/Publication: 2025-04-18 12:30:02 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "yamlet")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘yamlet-Ex.R’ failed + The error most likely occurred in: + + > ### Name: ggplot_add.ggplot_isometric + > ### Title: Add Isometry to Plot Object + > ### Aliases: ggplot_add.ggplot_isometric + > ### Keywords: internal + > + > ### ** Examples + > + ... + 11. └─base_ops[[.Generic]](e1, e2) + 12. ├─S7::S7_dispatch() + 13. └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) + 14. └─ggplot2:::add_ggplot(e1, e2, e2name) + 15. └─ggplot2::ggplot_add(object, p, objectname) + 16. ├─S7::S7_dispatch() + 17. └─ggplot2 (local) `method(ggplot_add, list(class_any, ggplot2::ggplot))`(object = ``, plot = ``, ...) + 18. └─cli::cli_abort("Can't add {.var {object_name}} to a {.cls ggplot} object.") + 19. └─rlang::abort(...) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(yamlet) + + Attaching package: 'yamlet' + + The following object is masked from 'package:stats': + + ... + ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ + • empty test (2): 'test-yamlet.R:1340:1', 'test-yamlet.R:1345:1' + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-yamlet.R:1903:3'): print.decorated_ggplot() warns if label has length > 1 ── + `print(b)` did not produce any warnings. + + [ FAIL 1 | WARN 0 | SKIP 2 | PASS 532 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘scripted-html.Rmd’ using rmarkdown + ``` + +# yardstick + +
+ +* Version: 1.3.2 +* GitHub: https://github.com/tidymodels/yardstick +* Source code: https://github.com/cran/yardstick +* Date/Publication: 2025-01-22 23:10:02 UTC +* Number of recursive dependencies: 126 + +Run `revdepcheck::cloud_details(, "yardstick")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(yardstick) + > + > test_check("yardstick") + [ FAIL 41 | WARN 124 | SKIP 174 | PASS 903 ] + + ══ Skipped tests (174) ═════════════════════════════════════════════════════════ + ... + ── Error ('test-prob-gain_curve.R:200:3'): gain_curve() with case weights scales `.n` and `.n_events` ── + Error: Can't get S7 properties with `$`. Did you mean `data@data`? + Backtrace: + ▆ + 1. ├─data$data at test-prob-gain_curve.R:200:3 + 2. └─S7:::`$.S7_object`(data, data) at test-prob-gain_curve.R:200:3 + + [ FAIL 41 | WARN 124 | SKIP 174 | PASS 903 ] + Error: Test failures + Execution halted + ``` + +# ZetaSuite + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/ZetaSuite +* Date/Publication: 2022-05-24 19:40:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "ZetaSuite")` for more info + +
+ +## Newly broken + +* checking whether package ‘ZetaSuite’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘ZetaSuite’ + See ‘/tmp/workdir/ZetaSuite/new/ZetaSuite.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘dplyr’ + All declared Imports should be used. + ``` + diff --git a/tests/testthat/_snaps/4.0/theme.md b/tests/testthat/_snaps/4.0/theme.md new file mode 100644 index 0000000000..e4df8865e7 --- /dev/null +++ b/tests/testthat/_snaps/4.0/theme.md @@ -0,0 +1,8 @@ +# modifying theme element properties with + operator works + + Code + theme_grey() + "asdf" + Condition + Error in `method(+, list(ggplot2::theme, class_any))`: + ! Can't add `"asdf"` to a theme object. + diff --git a/tests/testthat/_snaps/4.4/theme.md b/tests/testthat/_snaps/4.4/theme.md new file mode 100644 index 0000000000..ee5f23ab56 --- /dev/null +++ b/tests/testthat/_snaps/4.4/theme.md @@ -0,0 +1,8 @@ +# modifying theme element properties with + operator works + + Code + theme_grey() + "asdf" + Condition + Error: + ! Can't add `"asdf"` to a theme object. + diff --git a/tests/testthat/_snaps/4.5/theme.md b/tests/testthat/_snaps/4.5/theme.md new file mode 100644 index 0000000000..ee5f23ab56 --- /dev/null +++ b/tests/testthat/_snaps/4.5/theme.md @@ -0,0 +1,8 @@ +# modifying theme element properties with + operator works + + Code + theme_grey() + "asdf" + Condition + Error: + ! Can't add `"asdf"` to a theme object. + diff --git a/tests/testthat/_snaps/aes.md b/tests/testthat/_snaps/aes.md index 4a891eacbe..c4b534a453 100644 --- a/tests/testthat/_snaps/aes.md +++ b/tests/testthat/_snaps/aes.md @@ -54,7 +54,7 @@ Don't know how to get alternative usage for `foo`. -# new_aes() checks its inputs +# class_mapping() checks its inputs `x` must be a , not an integer vector. diff --git a/tests/testthat/_snaps/error.md b/tests/testthat/_snaps/error.md deleted file mode 100644 index a8cb5172df..0000000000 --- a/tests/testthat/_snaps/error.md +++ /dev/null @@ -1,10 +0,0 @@ -# various misuses of +.gg (#2638) - - Cannot use `+` with a single argument. - i Did you accidentally put `+` on a new line? - ---- - - Cannot add objects together. - i Did you forget to add this object to a object? - diff --git a/tests/testthat/_snaps/fortify.md b/tests/testthat/_snaps/fortify.md index 605829d9d8..5baf41b576 100644 --- a/tests/testthat/_snaps/fortify.md +++ b/tests/testthat/_snaps/fortify.md @@ -1,6 +1,6 @@ -# fortify.default proves a helpful error with class uneval +# fortify.default proves a helpful error with mapping class - `data` must be a , or an object coercible by `fortify()`, or a valid -like object coercible by `as.data.frame()`, not a object. + `data` must be a , or an object coercible by `fortify()`, or a valid -like object coercible by `as.data.frame()`, not a object. i Did you accidentally pass `aes()` to the `data` argument? # fortify.default can handle healthy data-frame-like objects diff --git a/tests/testthat/_snaps/prohibited-functions.md b/tests/testthat/_snaps/prohibited-functions.md index e13510ebcf..fe32ebf1c4 100644 --- a/tests/testthat/_snaps/prohibited-functions.md +++ b/tests/testthat/_snaps/prohibited-functions.md @@ -12,6 +12,9 @@ $calc_element [1] "skip_blank" + $class_ggplot + [1] "plot_env" + $continuous_scale [1] "scale_name" "minor_breaks" @@ -52,9 +55,6 @@ $geom_violin [1] "draw_quantiles" - $ggplot_add - [1] "object_name" - $ggproto [1] "_class" "_inherit" diff --git a/tests/testthat/_snaps/summarise-plot.md b/tests/testthat/_snaps/summarise-plot.md index 32582d9366..84128c3b47 100644 --- a/tests/testthat/_snaps/summarise-plot.md +++ b/tests/testthat/_snaps/summarise-plot.md @@ -1,12 +1,12 @@ # summarise_*() throws appropriate errors - `p` must be a object, not the number 10. + `p` must be a object, not the number 10. --- - `p` must be a object, not the string "A". + `p` must be a object, not the string "A". --- - `p` must be a object, not `TRUE`. + `p` must be a object, not `TRUE`. diff --git a/tests/testthat/_snaps/theme.md b/tests/testthat/_snaps/theme.md index 0218bbef51..bd92d95024 100644 --- a/tests/testthat/_snaps/theme.md +++ b/tests/testthat/_snaps/theme.md @@ -1,19 +1,3 @@ -# modifying theme element properties with + operator works - - Code - theme_grey() + "asdf" - Condition - Error: - ! Can't add `"asdf"` to a theme object. - -# replacing theme elements with %+replace% operator works - - Code - theme_grey() + "asdf" - Condition - Error: - ! Can't add `"asdf"` to a theme object. - # theme validation happens at build stage The `text` theme element must be a object. @@ -25,7 +9,7 @@ # incorrect theme specifications throw meaningful errors Can't merge the `line` theme element. - Caused by error in `merge_element()`: + Caused by error in `method(merge_element, list(ggplot2::element, class_any))`: ! Only elements of the same class can be merged. --- @@ -34,7 +18,7 @@ --- - Theme element `test` has `NULL` property without default: fill, colour, linewidth, and linetype. + Theme element `test` has `NULL` property without default: fill, colour, linewidth, linetype, and linejoin. --- @@ -74,7 +58,7 @@ Code merge_element(text_base, rect_base) Condition - Error in `merge_element()`: + Error in `method(merge_element, list(ggplot2::element, class_any))`: ! Only elements of the same class can be merged. # Theme elements are checked during build diff --git a/tests/testthat/helper-plot-data.R b/tests/testthat/helper-plot-data.R index 13e36d861a..cf97be4122 100644 --- a/tests/testthat/helper-plot-data.R +++ b/tests/testthat/helper-plot-data.R @@ -2,23 +2,23 @@ cdata <- function(plot) { pieces <- ggplot_build(plot) - lapply(pieces$data, function(d) { + lapply(pieces@data, function(d) { dapply(d, "PANEL", function(panel_data) { - scales <- pieces$layout$get_scales(panel_data$PANEL[1]) - panel_params <- plot$coordinates$setup_panel_params(scales$x, scales$y, params = pieces$layout$coord_params) - plot$coordinates$transform(panel_data, panel_params) + scales <- pieces@layout$get_scales(panel_data$PANEL[1]) + panel_params <- plot@coordinates$setup_panel_params(scales$x, scales$y, params = pieces@layout$coord_params) + plot@coordinates$transform(panel_data, panel_params) }) }) } pranges <- function(plot) { - layout <- ggplot_build(plot)$layout + layout <- ggplot_build(plot)@layout x_ranges <- lapply(layout$panel_scales_x, function(scale) scale$get_limits()) y_ranges <- lapply(layout$panel_scales_y, function(scale) scale$get_limits()) - npscales <- plot$scales$non_position_scales() + npscales <- plot@scales$non_position_scales() npranges <- lapply(npscales$scales$scales, function(scale) scale$get_limits()) diff --git a/tests/testthat/test-add.R b/tests/testthat/test-add.R index a860a55845..0c318e6c9e 100644 --- a/tests/testthat/test-add.R +++ b/tests/testthat/test-add.R @@ -1,4 +1,4 @@ -test_that("mapping class is preserved when adding uneval objects", { +test_that("mapping class is preserved when adding mapping objects", { p <- ggplot(mtcars) + aes(wt, mpg) - expect_identical(class(p$mapping), "uneval") + expect_s7_class(p@mapping, class_mapping) }) diff --git a/tests/testthat/test-aes.R b/tests/testthat/test-aes.R index a42b4a3ae1..b0922383cc 100644 --- a/tests/testthat/test-aes.R +++ b/tests/testthat/test-aes.R @@ -37,8 +37,8 @@ test_that("aes_q() & aes_string() preserve explicit NULLs", { test_that("aes_all() converts strings into mappings", { expect_equal( - aes_all(c("x", "y", "col", "pch")), - aes(x, y, colour = col, shape = pch), + unclass(aes_all(c("x", "y", "col", "pch"))), + unclass(aes(x, y, colour = col, shape = pch)), # ignore the environments of quosures ignore_attr = TRUE ) @@ -67,7 +67,7 @@ test_that("aes evaluated in environment where plot created", { test_that("constants are not wrapped in quosures", { aes <- aes(1L, "foo", 1.5) - expect_identical(unclass(aes), list(x = 1L, y = "foo", 1.5)) + expect_identical(S7::S7_data(aes), list(x = 1L, y = "foo", 1.5)) }) test_that("assignment methods wrap symbolic objects in quosures", { @@ -96,13 +96,13 @@ test_that("assignment methods pull unwrap constants from quosures", { test_that("quosures are squashed when creating default label for a mapping", { p <- ggplot(mtcars) + aes(!!quo(identity(!!quo(cyl)))) - labels <- ggplot_build(p)$plot$labels + labels <- ggplot_build(p)@plot@labels expect_identical(labels$x, "identity(cyl)") }) test_that("labelling doesn't cause error if aesthetic is NULL", { p <- ggplot(mtcars) + aes(x = NULL) - labels <- ggplot_build(p)$plot$labels + labels <- ggplot_build(p)@plot@labels expect_identical(labels$x, "x") }) @@ -195,8 +195,8 @@ test_that("alternative_aes_extract_usage() can inspect the call", { expect_snapshot_error(alternative_aes_extract_usage(x)) }) -test_that("new_aes() checks its inputs", { - expect_snapshot_error(new_aes(1:5)) +test_that("class_mapping() checks its inputs", { + expect_snapshot_error(class_mapping(1:5)) }) # Visual tests ------------------------------------------------------------ diff --git a/tests/testthat/test-build.R b/tests/testthat/test-build.R index cdcbe0c6ac..cfb4cf6e4a 100644 --- a/tests/testthat/test-build.R +++ b/tests/testthat/test-build.R @@ -2,7 +2,7 @@ df <- data_frame(x = 1:3, y = 3:1, z = letters[1:3]) test_that("there is one data frame for each layer", { - nlayers <- function(x) length(ggplot_build(x)$data) + nlayers <- function(x) length(ggplot_build(x)@data) l1 <- ggplot(df, aes(x, y)) + geom_point() l2 <- ggplot(df, aes(x, y)) + geom_point() + geom_line() diff --git a/tests/testthat/test-coord-.R b/tests/testthat/test-coord-.R index b0cef2de26..ea80cb5ce1 100644 --- a/tests/testthat/test-coord-.R +++ b/tests/testthat/test-coord-.R @@ -8,7 +8,7 @@ test_that("Coord errors on missing methods", { test_that("clipping is on by default", { p <- ggplot() - coord <- ggplot_build(p)$layout$coord + coord <- ggplot_build(p)@layout$coord expect_equal(coord$clip, "on") }) @@ -30,11 +30,11 @@ test_that("guide names are not removed by `train_panel_guides()`", { data <- ggplot_build(gg) # Excerpt from ggplot_gtable.ggplot_built - plot <- data$plot - layout <- data$layout - data <- data$data + plot <- data@plot + layout <- data@layout + data <- data@data - layout$setup_panel_guides(guides_list(NULL), plot$layers) + layout$setup_panel_guides(guides_list(NULL), plot@layers) # Line showing change in outcome expect_named(layout$panel_params[[1]]$guides$aesthetics, c("x", "y", "x.sec", "y.sec")) @@ -97,12 +97,12 @@ test_that("coord expand takes a vector", { base <- ggplot() + lims(x = c(0, 10), y = c(0, 10)) p <- ggplot_build(base + coord_cartesian(expand = c(TRUE, FALSE, FALSE, TRUE))) - pp <- p$layout$panel_params[[1]] + pp <- p@layout$panel_params[[1]] expect_equal(pp$x.range, c(-0.5, 10)) expect_equal(pp$y.range, c(0, 10.5)) p <- ggplot_build(base + coord_cartesian(expand = c(top = FALSE, left = FALSE))) - pp <- p$layout$panel_params[[1]] + pp <- p@layout$panel_params[[1]] expect_equal(pp$x.range, c(0, 10.5)) expect_equal(pp$y.range, c(-0.5, 10)) diff --git a/tests/testthat/test-coord-cartesian.R b/tests/testthat/test-coord-cartesian.R index e54b123d61..e63663f7e4 100644 --- a/tests/testthat/test-coord-cartesian.R +++ b/tests/testthat/test-coord-cartesian.R @@ -1,16 +1,16 @@ test_that("clipping can be turned off and on", { # clip on by default p <- ggplot() + coord_cartesian() - coord <- ggplot_build(p)$layout$coord + coord <- ggplot_build(p)@layout$coord expect_equal(coord$clip, "on") # clip can be turned on and off p <- ggplot() + coord_cartesian(clip = "off") - coord <- ggplot_build(p)$layout$coord + coord <- ggplot_build(p)@layout$coord expect_equal(coord$clip, "off") p <- ggplot() + coord_cartesian(clip = "on") - coord <- ggplot_build(p)$layout$coord + coord <- ggplot_build(p)@layout$coord expect_equal(coord$clip, "on") }) diff --git a/tests/testthat/test-coord-polar.R b/tests/testthat/test-coord-polar.R index 08427fadda..f45b76d194 100644 --- a/tests/testthat/test-coord-polar.R +++ b/tests/testthat/test-coord-polar.R @@ -55,11 +55,11 @@ test_that("polar distance calculation ignores NA's", { test_that("clipping can be turned off and on", { # clip can be turned on and off p <- ggplot() + coord_polar() - coord <- ggplot_build(p)$layout$coord + coord <- ggplot_build(p)@layout$coord expect_equal(coord$clip, "on") p <- ggplot() + coord_polar(clip = "off") - coord <- ggplot_build(p)$layout$coord + coord <- ggplot_build(p)@layout$coord expect_equal(coord$clip, "off") }) @@ -209,7 +209,7 @@ test_that("coord_radial can deal with empty breaks (#6271)", { scale_x_continuous(breaks = numeric()) + scale_y_continuous(breaks = numeric()) ) - guides <- p$layout$panel_params[[1]]$guides$guides + guides <- p@layout$panel_params[[1]]$guides$guides is_none <- vapply(guides, inherits, logical(1), what = "GuideNone") expect_true(all(is_none)) }) diff --git a/tests/testthat/test-coord-transform.R b/tests/testthat/test-coord-transform.R index 035d534737..5711ea5768 100644 --- a/tests/testthat/test-coord-transform.R +++ b/tests/testthat/test-coord-transform.R @@ -28,8 +28,8 @@ test_that("coord_transform() expands axes identically to coord_cartesian()", { built_cartesian <- ggplot_build(p + coord_cartesian()) built_trans <- ggplot_build(p + coord_transform()) - cartesian_params <- built_cartesian$layout$panel_params[[1]] - trans_params <- built_trans$layout$panel_params[[1]] + cartesian_params <- built_cartesian@layout$panel_params[[1]] + trans_params <- built_trans@layout$panel_params[[1]] expect_identical(cartesian_params$x.range, trans_params$x.range) expect_identical(cartesian_params$y.range, trans_params$y.range) @@ -40,8 +40,8 @@ test_that("coord_transform(expand = FALSE) expands axes identically to coord_car built_cartesian <- ggplot_build(p + coord_cartesian(expand = FALSE)) built_trans <- ggplot_build(p + coord_transform(expand = FALSE)) - cartesian_params <- built_cartesian$layout$panel_params[[1]] - trans_params <- built_trans$layout$panel_params[[1]] + cartesian_params <- built_cartesian@layout$panel_params[[1]] + trans_params <- built_trans@layout$panel_params[[1]] expect_identical(cartesian_params$x.range, trans_params$x.range) expect_identical(cartesian_params$y.range, trans_params$y.range) @@ -52,8 +52,8 @@ test_that("coord_transform(y = 'log10') expands the x axis identically to scale_ built_cartesian <- ggplot_build(p + scale_y_log10()) built_trans <- ggplot_build(p + coord_transform(y = "log10")) - cartesian_params <- built_cartesian$layout$panel_params[[1]] - trans_params <- built_trans$layout$panel_params[[1]] + cartesian_params <- built_cartesian@layout$panel_params[[1]] + trans_params <- built_trans@layout$panel_params[[1]] expect_identical(cartesian_params$y.range, trans_params$y.range) }) @@ -65,8 +65,8 @@ test_that("coord_transform() expands axes outside the domain of the axis trans", built_cartesian <- ggplot_build(p + scale_y_sqrt()) built_trans <- ggplot_build(p + coord_transform(y = "sqrt")) - cartesian_params <- built_cartesian$layout$panel_params[[1]] - trans_params <- built_trans$layout$panel_params[[1]] + cartesian_params <- built_cartesian@layout$panel_params[[1]] + trans_params <- built_trans@layout$panel_params[[1]] expect_identical(cartesian_params$y.range, trans_params$y.range) }) @@ -78,8 +78,8 @@ test_that("coord_transform() works with the reverse transformation", { built_cartesian <- ggplot_build(p + scale_y_reverse()) built_trans <- ggplot_build(p + coord_transform(y = "reverse")) - cartesian_params <- built_cartesian$layout$panel_params[[1]] - trans_params <- built_trans$layout$panel_params[[1]] + cartesian_params <- built_cartesian@layout$panel_params[[1]] + trans_params <- built_trans@layout$panel_params[[1]] expect_identical(cartesian_params$y.range, trans_params$y.range) }) @@ -91,8 +91,8 @@ test_that("coord_transform() can reverse discrete axes", { built_cartesian <- ggplot_build(p) built_trans <- ggplot_build(p + coord_transform(x = "reverse")) - cartesian_params <- built_cartesian$layout$panel_params[[1]] - trans_params <- built_trans$layout$panel_params[[1]] + cartesian_params <- built_cartesian@layout$panel_params[[1]] + trans_params <- built_trans@layout$panel_params[[1]] expect_identical(cartesian_params$x.range, -rev(trans_params$x.range)) }) diff --git a/tests/testthat/test-coord_sf.R b/tests/testthat/test-coord_sf.R index 463aee8d1c..9e33c73ce0 100644 --- a/tests/testthat/test-coord_sf.R +++ b/tests/testthat/test-coord_sf.R @@ -56,7 +56,7 @@ test_that("axis labels are correct for manual breaks", { scale_x_continuous(breaks = c(1000, 2000, 3000)) + scale_y_continuous(breaks = c(1000, 1500, 2000)) ) - graticule <- b$layout$panel_params[[1]]$graticule + graticule <- b@layout$panel_params[[1]]$graticule expect_identical( graticule[graticule$type == "E", ]$degree_label, c("1000", "2000", "3000") @@ -85,7 +85,7 @@ test_that("axis labels can be set manually", { labels = c("D", "E", "F") ) ) - graticule <- b$layout$panel_params[[1]]$graticule + graticule <- b@layout$panel_params[[1]]$graticule expect_identical( graticule[graticule$type == "E", ]$degree_label, c("A", "B", "C") @@ -128,7 +128,7 @@ test_that("factors are treated like character labels and are not parsed", { labels = factor(c("1 * degree * N", "1.5 * degree * N", "2 * degree * N")) ) ) - graticule <- b$layout$panel_params[[1]]$graticule + graticule <- b@layout$panel_params[[1]]$graticule expect_identical( graticule[graticule$type == "E", ]$degree_label, c("A", "B", "C") @@ -156,7 +156,7 @@ test_that("expressions can be mixed with character labels", { labels = parse(text = c("10^3", "1.5 %*% 10^3", "2 %*% 10^3")) ) ) - graticule <- b$layout$panel_params[[1]]$graticule + graticule <- b@layout$panel_params[[1]]$graticule expect_identical( graticule[graticule$type == "E", ]$degree_label, as.list(c("A", "B", "C")) @@ -180,7 +180,7 @@ test_that("expressions can be mixed with character labels", { labels = parse(text = c("10^3", "1.5 %*% 10^3", "2 %*% 10^3")) ) ) - graticule <- b$layout$panel_params[[1]]$graticule + graticule <- b@layout$panel_params[[1]]$graticule expect_identical( graticule[graticule$type == "N", ]$degree_label, as.list(c("A", "B", "C")) @@ -207,7 +207,7 @@ test_that("degree labels are automatically parsed", { scale_y_continuous(breaks = c(10, 15, 20)) ) - graticule <- b$layout$panel_params[[1]]$graticule + graticule <- b@layout$panel_params[[1]]$graticule expect_setequal( graticule[graticule$type == "N", ]$degree, c(10, 15, 20) @@ -343,7 +343,7 @@ test_that("coord_sf() can use function breaks and n.breaks", { scale_y_continuous(n.breaks = 4) b <- ggplot_build(p) - grat <- b$layout$panel_params[[1]]$graticule + grat <- b@layout$panel_params[[1]]$graticule expect_equal( vec_slice(grat$degree, grat$type == "E"), diff --git a/tests/testthat/test-error.R b/tests/testthat/test-error.R deleted file mode 100644 index 8e1424a7f1..0000000000 --- a/tests/testthat/test-error.R +++ /dev/null @@ -1,12 +0,0 @@ -test_that("various misuses of +.gg (#2638)", { - expect_snapshot_error( - { - ggplot(mtcars, aes(hwy, displ)) - + geom_point() - } - ) - - expect_snapshot_error( - geom_point() + geom_point() - ) -}) diff --git a/tests/testthat/test-facet-labels.R b/tests/testthat/test-facet-labels.R index 01fe866a92..f755e93aa8 100644 --- a/tests/testthat/test-facet-labels.R +++ b/tests/testthat/test-facet-labels.R @@ -1,6 +1,6 @@ get_labels_matrix <- function(plot, ...) { data <- ggplot_build(plot) - layout <- data$layout + layout <- data@layout labels <- get_labels_info(layout$facet, layout, ...) labeller <- match.fun(layout$facet$params$labeller) diff --git a/tests/testthat/test-facet-map.R b/tests/testthat/test-facet-map.R index d6d1d0c79a..4ce6e24329 100644 --- a/tests/testthat/test-facet-map.R +++ b/tests/testthat/test-facet-map.R @@ -184,7 +184,7 @@ test_that("grid: missing values are located correctly", { # Facet order ---------------------------------------------------------------- -get_layout <- function(p) ggplot_build(p)$layout$layout +get_layout <- function(p) ggplot_build(p)@layout$layout # Data with factor f with levels CBA d <- data_frame(x = 1:9, y = 1:9, diff --git a/tests/testthat/test-facet-strips.R b/tests/testthat/test-facet-strips.R index d13f8d500c..2f1080877f 100644 --- a/tests/testthat/test-facet-strips.R +++ b/tests/testthat/test-facet-strips.R @@ -1,13 +1,13 @@ strip_layout <- function(p) { data <- ggplot_build(p) - plot <- data$plot - layout <- data$layout - data <- data$data + plot <- data@plot + layout <- data@layout + data <- data@data theme <- plot_theme(plot) - geom_grobs <- Map(function(l, d) l$draw_geom(d, layout), plot$layers, data) + geom_grobs <- Map(function(l, d) l$draw_geom(d, layout), plot@layers, data) - facet <- layout$render(geom_grobs, data, theme, plot$labels) + facet <- layout$render(geom_grobs, data, theme, plot@labels) layout <- facet$layout strip_layout <- layout[grepl("^strip", layout$name), 1:4] as.list(strip_layout) diff --git a/tests/testthat/test-fortify.R b/tests/testthat/test-fortify.R index e98edad549..2650884942 100644 --- a/tests/testthat/test-fortify.R +++ b/tests/testthat/test-fortify.R @@ -56,7 +56,7 @@ test_that("spatial polygons have correct ordering", { ) }) -test_that("fortify.default proves a helpful error with class uneval", { +test_that("fortify.default proves a helpful error with mapping class", { expect_snapshot_error(ggplot(aes(x = x))) }) diff --git a/tests/testthat/test-geom-.R b/tests/testthat/test-geom-.R index 6766178f22..02e0ed9710 100644 --- a/tests/testthat/test-geom-.R +++ b/tests/testthat/test-geom-.R @@ -53,7 +53,7 @@ test_that("updating geom aesthetic defaults preserves class and order", { updated_defaults <- GeomPoint$default_aes - expect_s3_class(updated_defaults, "uneval") + expect_s7_class(updated_defaults, class_mapping) intended_defaults <- original_defaults intended_defaults[["colour"]] <- "red" @@ -75,7 +75,7 @@ test_that("updating stat aesthetic defaults preserves class and order", { updated_defaults <- StatBin$default_aes - expect_s3_class(updated_defaults, "uneval") + expect_s7_class(updated_defaults, class_mapping) intended_defaults <- original_defaults intended_defaults[["y"]] <- expr(after_stat(density)) diff --git a/tests/testthat/test-geom-boxplot.R b/tests/testthat/test-geom-boxplot.R index 81d37cc5a9..9d977501ff 100644 --- a/tests/testthat/test-geom-boxplot.R +++ b/tests/testthat/test-geom-boxplot.R @@ -3,8 +3,8 @@ test_that("geom_boxplot range includes all outliers", { dat <- data_frame(x = 1, y = c(-(1:20) ^ 3, (1:20) ^ 3) ) p <- ggplot_build(ggplot(dat, aes(x,y)) + geom_boxplot()) - miny <- p$layout$panel_params[[1]]$y.range[1] - maxy <- p$layout$panel_params[[1]]$y.range[2] + miny <- p@layout$panel_params[[1]]$y.range[1] + maxy <- p@layout$panel_params[[1]]$y.range[2] expect_true(miny <= min(dat$y)) expect_true(maxy >= max(dat$y)) @@ -12,8 +12,8 @@ test_that("geom_boxplot range includes all outliers", { # Unless specifically directed not to p <- ggplot_build(ggplot(dat, aes(x, y)) + geom_boxplot(outliers = FALSE)) - miny <- p$layout$panel_params[[1]]$y.range[1] - maxy <- p$layout$panel_params[[1]]$y.range[2] + miny <- p@layout$panel_params[[1]]$y.range[1] + maxy <- p@layout$panel_params[[1]]$y.range[2] expect_lte(maxy, max(dat$y)) expect_gte(miny, min(dat$y)) diff --git a/tests/testthat/test-geom-dotplot.R b/tests/testthat/test-geom-dotplot.R index f7159bdd80..fa43204e67 100644 --- a/tests/testthat/test-geom-dotplot.R +++ b/tests/testthat/test-geom-dotplot.R @@ -68,8 +68,8 @@ test_that("when binning on y-axis, limits depend on the panel", { b1 <- ggplot_build(p + facet_wrap(~am)) b2 <- ggplot_build(p + facet_wrap(~am, scales = "free_y")) - equal_limits1 <- (b1$layout$panel_params[[1]]$y.range == b1$layout$panel_params[[2]]$y.range) - equal_limits2 <- (b2$layout$panel_params[[1]]$y.range == b2$layout$panel_params[[2]]$y.range) + equal_limits1 <- (b1@layout$panel_params[[1]]$y.range == b1@layout$panel_params[[2]]$y.range) + equal_limits2 <- (b2@layout$panel_params[[1]]$y.range == b2@layout$panel_params[[2]]$y.range) expect_true(all(equal_limits1)) expect_false(all(equal_limits2)) diff --git a/tests/testthat/test-geom-polygon.R b/tests/testthat/test-geom-polygon.R index 3cf3636655..eec237f588 100644 --- a/tests/testthat/test-geom-polygon.R +++ b/tests/testthat/test-geom-polygon.R @@ -40,9 +40,9 @@ test_that("geom_polygon is closed before munching", { coord_polar() built <- ggplot_build(p) - coord <- built$plot$coordinates - data <- built$data[[1]] - param <- built$layout$panel_params[[1]] + coord <- built@plot@coordinates + data <- built@data[[1]] + param <- built@layout$panel_params[[1]] closed <- coord_munch(coord, data, param, is_closed = TRUE) open <- coord_munch(coord, data, param, is_closed = FALSE) diff --git a/tests/testthat/test-geom-sf.R b/tests/testthat/test-geom-sf.R index 29f5da8323..6503cf7678 100644 --- a/tests/testthat/test-geom-sf.R +++ b/tests/testthat/test-geom-sf.R @@ -30,24 +30,24 @@ test_that("geom_sf() determines the legend type automatically", { } # test the automatic choice - expect_true(fun_geom_sf(mp, TRUE)$plot$layers[[1]]$show.legend) - expect_identical(fun_geom_sf(mp, TRUE)$plot$layers[[1]]$computed_geom_params$legend, "point") + expect_true(fun_geom_sf(mp, TRUE)@plot@layers[[1]]$show.legend) + expect_identical(fun_geom_sf(mp, TRUE)@plot@layers[[1]]$computed_geom_params$legend, "point") - expect_true(fun_geom_sf(mls, TRUE)$plot$layers[[1]]$show.legend) - expect_identical(fun_geom_sf(mls, TRUE)$plot$layers[[1]]$computed_geom_params$legend, "line") + expect_true(fun_geom_sf(mls, TRUE)@plot@layers[[1]]$show.legend) + expect_identical(fun_geom_sf(mls, TRUE)@plot@layers[[1]]$computed_geom_params$legend, "line") - expect_true(fun_geom_sf(mpol, TRUE)$plot$layers[[1]]$show.legend) - expect_identical(fun_geom_sf(mpol, TRUE)$plot$layers[[1]]$computed_geom_params$legend, "other") + expect_true(fun_geom_sf(mpol, TRUE)@plot@layers[[1]]$show.legend) + expect_identical(fun_geom_sf(mpol, TRUE)@plot@layers[[1]]$computed_geom_params$legend, "other") # test that automatic choice can be overridden manually - expect_true(fun_geom_sf(mp, "point")$plot$layers[[1]]$show.legend) - expect_identical(fun_geom_sf(mp, "point")$plot$layers[[1]]$computed_geom_params$legend, "point") + expect_true(fun_geom_sf(mp, "point")@plot@layers[[1]]$show.legend) + expect_identical(fun_geom_sf(mp, "point")@plot@layers[[1]]$computed_geom_params$legend, "point") - expect_true(fun_geom_sf(mls, "point")$plot$layers[[1]]$show.legend) - expect_identical(fun_geom_sf(mls, "point")$plot$layers[[1]]$computed_geom_params$legend, "point") + expect_true(fun_geom_sf(mls, "point")@plot@layers[[1]]$show.legend) + expect_identical(fun_geom_sf(mls, "point")@plot@layers[[1]]$computed_geom_params$legend, "point") - expect_true(fun_geom_sf(mpol, "point")$plot$layers[[1]]$show.legend) - expect_identical(fun_geom_sf(mpol, "point")$plot$layers[[1]]$computed_geom_params$legend, "point") + expect_true(fun_geom_sf(mpol, "point")@plot@layers[[1]]$show.legend) + expect_identical(fun_geom_sf(mpol, "point")@plot@layers[[1]]$computed_geom_params$legend, "point") }) test_that("geom_sf() determines the legend type from mapped geometry column", { @@ -68,12 +68,12 @@ test_that("geom_sf() determines the legend type from mapped geometry column", { p <- ggplot_build( ggplot(d_sf) + geom_sf(aes(geometry = g_point, colour = "a")) ) - expect_identical(p$plot$layers[[1]]$computed_geom_params$legend, "point") + expect_identical(p@plot@layers[[1]]$computed_geom_params$legend, "point") p <- ggplot_build( ggplot(d_sf) + geom_sf(aes(geometry = g_line, colour = "a")) ) - expect_identical(p$plot$layers[[1]]$computed_geom_params$legend, "line") + expect_identical(p@plot@layers[[1]]$computed_geom_params$legend, "line") }) test_that("geom_sf() removes rows containing missing aes", { @@ -197,7 +197,7 @@ test_that("geom_sf data type renders appropriate legends", { ) expect_doppelganger( "geom_sf point legend", - p %+% data + ggplot_add(data, p) ) # Line data @@ -210,7 +210,7 @@ test_that("geom_sf data type renders appropriate legends", { ) expect_doppelganger( "geom_sf line legend", - p %+% data + ggplot_add(data, p) ) # Polygon data @@ -223,7 +223,7 @@ test_that("geom_sf data type renders appropriate legends", { ) expect_doppelganger( "geom_sf polygon legend", - p %+% data + ggplot_add(data, p) ) }) diff --git a/tests/testthat/test-guide-.R b/tests/testthat/test-guide-.R index 4f66920c3e..e5f9c34bc6 100644 --- a/tests/testthat/test-guide-.R +++ b/tests/testthat/test-guide-.R @@ -14,29 +14,29 @@ test_that("plotting does not induce state changes in guides", { geom_point() + guides - snapshot <- serialize(as.list(p$guides), NULL) + snapshot <- serialize(as.list(p@guides), NULL) grob <- ggplotGrob(p) - expect_identical(as.list(p$guides), unserialize(snapshot)) + expect_identical(as.list(p@guides), unserialize(snapshot)) }) test_that("adding guides doesn't change plot state", { p1 <- ggplot(mtcars, aes(disp, mpg)) - expect_length(p1$guides$guides, 0) + expect_length(p1@guides$guides, 0) p2 <- p1 + guides(y = guide_axis(angle = 45)) - expect_length(p1$guides$guides, 0) - expect_length(p2$guides$guides, 1) + expect_length(p1@guides$guides, 0) + expect_length(p2@guides$guides, 1) p3 <- p2 + guides(y = guide_axis(angle = 90)) - expect_length(p3$guides$guides, 1) - expect_equal(p3$guides$guides[[1]]$params$angle, 90) - expect_equal(p2$guides$guides[[1]]$params$angle, 45) + expect_length(p3@guides$guides, 1) + expect_equal(p3@guides$guides[[1]]$params$angle, 90) + expect_equal(p2@guides$guides[[1]]$params$angle, 45) }) test_that("dots are checked when making guides", { diff --git a/tests/testthat/test-guide-colorbar.R b/tests/testthat/test-guide-colorbar.R index 7cfd96a2f1..e9602a4c73 100644 --- a/tests/testthat/test-guide-colorbar.R +++ b/tests/testthat/test-guide-colorbar.R @@ -12,10 +12,10 @@ test_that("Colorbar respects show.legend in layer", { df <- data_frame(x = 1:3, y = 1) p <- ggplot(df, aes(x = x, y = y, color = x)) + geom_point(size = 20, shape = 21, show.legend = FALSE) - expect_length(ggplot_build(p)$plot$guides$guides, 0L) + expect_length(ggplot_build(p)@plot@guides$guides, 0L) p <- ggplot(df, aes(x = x, y = y, color = x)) + geom_point(size = 20, shape = 21, show.legend = TRUE) - expect_length(ggplot_build(p)$plot$guides$guides, 1L) + expect_length(ggplot_build(p)@plot@guides$guides, 1L) }) test_that("colorsteps and bins checks the breaks format", { diff --git a/tests/testthat/test-guide-legend.R b/tests/testthat/test-guide-legend.R index de9fdb38ab..2dd68fe01b 100644 --- a/tests/testthat/test-guide-legend.R +++ b/tests/testthat/test-guide-legend.R @@ -128,7 +128,7 @@ test_that("legends can be forced to display unrelated geoms", { ) b <- ggplot_build(p) - legend <- b$plot$guides$params[[1]] + legend <- b@plot@guides$params[[1]] expect_equal( legend$decor[[1]]$data$fill, diff --git a/tests/testthat/test-guides.R b/tests/testthat/test-guides.R index 64391776e3..ae1bfe85bd 100644 --- a/tests/testthat/test-guides.R +++ b/tests/testthat/test-guides.R @@ -6,12 +6,12 @@ test_that("guide_none() can be used in non-position scales", { scale_color_discrete(guide = guide_none()) built <- ggplot_build(p) - plot <- built$plot - guides <- guides_list(plot$guides) + plot <- built@plot + guides <- guides_list(plot@guides) guides <- guides$build( - plot$scales, - plot$layers, - plot$labels + plot@scales, + plot@layers, + plot@labels ) expect_length(guides$guides, 0) @@ -156,7 +156,7 @@ test_that("empty guides are dropped", { expect_equal(nrow(gd), 0) # Draw guides - guides <- p$plot$guides$assemble(theme_gray()) + guides <- p@plot@guides$assemble(theme_gray()) # All guide-boxes should be empty expect_true(is_zero(guides)) diff --git a/tests/testthat/test-labels.R b/tests/testthat/test-labels.R index 4befce8af6..28e7c7b403 100644 --- a/tests/testthat/test-labels.R +++ b/tests/testthat/test-labels.R @@ -25,16 +25,16 @@ test_that("setting guide labels works", { expect_identical(labs(color = "my label")$colour, "my label") # No extra elements exists - expect_equal(labs(title = "my title"), list(title = "my title"), ignore_attr = TRUE) # formal argument - expect_equal(labs(colour = "my label"), list(colour = "my label"), ignore_attr = TRUE) # dot - expect_equal(labs(foo = "bar"), list(foo = "bar"), ignore_attr = TRUE) # non-existent param + expect_length(labs(title = "my title"), 1) # formal argument + expect_length(labs(colour = "my label"), 1) # dot + expect_length(labs(foo = "bar"), 1) # non-existent param # labs() has list-splicing semantics params <- list(title = "my title", tag = "A)") expect_identical(labs(!!!params)$tag, "A)") # NULL is preserved - expect_equal(labs(title = NULL), list(title = NULL), ignore_attr = TRUE) + expect_length(labs(title = NULL), 1) # ggtitle works in the same way as labs() expect_identical(ggtitle("my title")$title, "my title") @@ -141,15 +141,15 @@ test_that("position axis label hierarchy works as intended", { geom_point(size = 5) p <- ggplot_build(p) - resolve_label <- function(x) p$layout$resolve_label(x, p$plot$labels) + resolve_label <- function(x) p@layout$resolve_label(x, p@plot@labels) # In absence of explicit title, get title from mapping expect_identical( - resolve_label(p$layout$panel_scales_x[[1]]), + resolve_label(p@layout$panel_scales_x[[1]]), list(secondary = NULL, primary = "foo") ) expect_identical( - resolve_label(p$layout$panel_scales_y[[1]]), + resolve_label(p@layout$panel_scales_y[[1]]), list(primary = "bar", secondary = NULL) ) @@ -164,9 +164,9 @@ test_that("position axis label hierarchy works as intended", { ) # Guide titles overrule scale names - p$layout$setup_panel_guides( + p@layout$setup_panel_guides( guides_list(list(x = guide_axis("quuX"), y = guide_axis("corgE"))), - p$plot$layers + p@plot@layers ) expect_identical( resolve_label(scale_x_continuous("Baz")), @@ -190,10 +190,10 @@ test_that("position axis label hierarchy works as intended", { ) # Secondary guide titles override secondary axis names - p$layout$setup_panel_guides( + p@layout$setup_panel_guides( guides_list(list(x = guide_axis("quuX"), y = guide_axis("corgE"), x.sec = guide_axis("waldo"), y.sec = guide_axis("fred"))), - p$plot$layers + p@plot@layers ) expect_identical( resolve_label(xsec), @@ -238,38 +238,38 @@ test_that("moving guide positions lets titles follow", { p <- ggplot_build(p) # Default guide positions - p$layout$setup_panel_guides( + p@layout$setup_panel_guides( guides_list( list(x = guide_axis("baz", position = "bottom"), y = guide_axis("qux", position = "left")) ), - p$plot$layers + p@plot@layers ) labs <- get_labs(p) expect <- list(x = "baz", x.sec = NULL, y = "qux", y.sec = NULL) expect_identical(labs[names(expect)], expect) # Guides at secondary positions - p$layout$setup_panel_guides( + p@layout$setup_panel_guides( guides_list( list(x = guide_axis("baz", position = "top"), y = guide_axis("qux", position = "right")) ), - p$plot$layers + p@plot@layers ) labs <- get_labs(p) expect_identical(labs[names(expect)], expect) # Primary guides at secondary positions with # secondary guides at primary positions - p$layout$setup_panel_guides( + p@layout$setup_panel_guides( guides_list( list(x = guide_axis("baz", position = "top"), y = guide_axis("qux", position = "right"), x.sec = guide_axis("quux"), y.sec = guide_axis("corge")) ), - p$plot$layers + p@plot@layers ) labs <- get_labs(p) expect[c("x.sec", "y.sec")] <- list("quux", "corge") @@ -288,16 +288,16 @@ test_that("label dictionaries work", { )) p <- ggplot_build(p) - x <- p$layout$resolve_label(p$layout$panel_scales_x[[1]], p$plot$labels) + x <- p@layout$resolve_label(p@layout$panel_scales_x[[1]], p@plot@labels) expect_equal(x$primary, "Displacement") - y <- p$layout$resolve_label(p$layout$panel_scales_y[[1]], p$plot$labels) + y <- p@layout$resolve_label(p@layout$panel_scales_y[[1]], p@plot@labels) expect_equal(y$primary, "Miles per gallon") - shape <- p$plot$guides$get_params("shape")$title + shape <- p@plot@guides$get_params("shape")$title expect_equal(shape, "Number of cylinders") - size <- p$plot$guides$get_params("size")$title + size <- p@plot@guides$get_params("size")$title expect_equal(size, "Rear axle ratio") }) diff --git a/tests/testthat/test-layer.R b/tests/testthat/test-layer.R index 23d7ef5ed6..efa1265b3f 100644 --- a/tests/testthat/test-layer.R +++ b/tests/testthat/test-layer.R @@ -94,10 +94,10 @@ test_that("layers are stateless except for the computed params", { df <- data.frame(x = 1:10, y = 1:10) p <- ggplot(df) + geom_col(aes(x = x, y = y), width = 0.8, fill = "red") - col_layer <- as.list(p$layers[[1]]) + col_layer <- as.list(p@layers[[1]]) stateless_names <- setdiff(names(col_layer), c("computed_geom_params", "computed_stat_params", "computed_mapping")) invisible(ggplotGrob(p)) - expect_identical(as.list(p$layers[[1]])[stateless_names], col_layer[stateless_names]) + expect_identical(as.list(p@layers[[1]])[stateless_names], col_layer[stateless_names]) }) test_that("inherit.aes works", { @@ -108,7 +108,7 @@ test_that("inherit.aes works", { geom_col(aes(x = x, y = y), inherit.aes = FALSE) invisible(ggplotGrob(p1)) invisible(ggplotGrob(p2)) - expect_identical(p1$layers[[1]]$computed_mapping, p2$layers[[1]]$computed_mapping) + expect_identical(p1@layers[[1]]$computed_mapping, p2@layers[[1]]$computed_mapping) }) test_that("retransform works on computed aesthetics in `map_statistic`", { @@ -117,8 +117,8 @@ test_that("retransform works on computed aesthetics in `map_statistic`", { expect_equal(get_layer_data(p)$y, c(3, 5)) # To double check: should be original values when `retransform = FALSE` - parent <- p$layers[[1]]$stat - p$layers[[1]]$stat <- ggproto(NULL, parent, retransform = FALSE) + parent <- p@layers[[1]]$stat + p@layers[[1]]$stat <- ggproto(NULL, parent, retransform = FALSE) expect_equal(get_layer_data(p)$y, c(9, 25)) }) @@ -148,10 +148,10 @@ test_that("layer warns for constant aesthetics", { test_that("layer names can be resolved", { p <- ggplot() + geom_point() + geom_point() - expect_named(p$layers, c("geom_point", "geom_point...2")) + expect_named(p@layers, c("geom_point", "geom_point...2")) p <- ggplot() + geom_point(name = "foo") + geom_point(name = "bar") - expect_named(p$layers, c("foo", "bar")) + expect_named(p@layers, c("foo", "bar")) l <- geom_point(name = "foobar") expect_snapshot(p + l + l, error = TRUE) diff --git a/tests/testthat/test-plot.R b/tests/testthat/test-plot.R index 2cccf79034..45a3e1cede 100644 --- a/tests/testthat/test-plot.R +++ b/tests/testthat/test-plot.R @@ -5,6 +5,7 @@ test_that("ggplot() throws informative errors", { }) test_that("construction have user friendly errors", { + skip_if(getRversion() < "4.3.0") expect_snapshot_error(+ geom_point()) expect_snapshot_error(geom_point() + geom_bar()) expect_snapshot_error(ggplot() + 1) diff --git a/tests/testthat/test-qplot.R b/tests/testthat/test-qplot.R index 74ab153c39..59527d1989 100644 --- a/tests/testthat/test-qplot.R +++ b/tests/testthat/test-qplot.R @@ -3,20 +3,25 @@ test_that("qplot works with variables in data frame and parent env", { y <- 1:10 b <- 1:10 + lifecycle::expect_deprecated( - expect_s3_class(qplot(x, y, data = df), "ggplot") + p <- qplot(x, y, data = df) ) + expect_s7_class(p, class_ggplot) lifecycle::expect_deprecated( - expect_s3_class(qplot(x, y, data = df, colour = a), "ggplot") + p <- qplot(x, y, data = df, colour = a) ) + expect_s7_class(p, class_ggplot) lifecycle::expect_deprecated( - expect_s3_class(qplot(x, y, data = df, colour = b), "ggplot") + p <- qplot(x, y, data = df, colour = b) ) + expect_s7_class(p, class_ggplot) bin <- 1 lifecycle::expect_deprecated( - expect_s3_class(qplot(x, data = df, binwidth = bin), "ggplot") + p <- qplot(x, data = df, binwidth = bin) ) + expect_s7_class(p, class_ggplot) }) test_that("qplot works in non-standard environments", { @@ -27,7 +32,7 @@ test_that("qplot works in non-standard environments", { qplot(x, breaks = 0:`-1-`) }) ) - expect_s3_class(p, "ggplot") + expect_s7_class(p, class_ggplot) }) test_that("qplot() evaluates constants in the right place", { diff --git a/tests/testthat/test-scale-discrete.R b/tests/testthat/test-scale-discrete.R index 50f7b585fe..46e5c83d16 100644 --- a/tests/testthat/test-scale-discrete.R +++ b/tests/testthat/test-scale-discrete.R @@ -180,7 +180,7 @@ test_that("palettes work for discrete scales", { # Check discsrete expansion is applied b <- ggplot_build(p) expect_equal( - b$layout$panel_params[[1]]$x.range, + b@layout$panel_params[[1]]$x.range, range(values) + c(-0.6, 0.6) ) }) diff --git a/tests/testthat/test-scale-manual.R b/tests/testthat/test-scale-manual.R index 324485952b..75f4879607 100644 --- a/tests/testthat/test-scale-manual.R +++ b/tests/testthat/test-scale-manual.R @@ -26,7 +26,7 @@ dat <- data_frame(g = c("B","A","A")) p <- ggplot(dat, aes(g, fill = g)) + geom_bar() col <- c("A" = "red", "B" = "green", "C" = "blue") -cols <- function(x) ggplot_build(x)$data[[1]][, "fill"] +cols <- function(x) ggplot_build(x)@data[[1]][, "fill"] test_that("named values work regardless of order", { fill_scale <- function(order) scale_fill_manual(values = col[order], diff --git a/tests/testthat/test-scales.R b/tests/testthat/test-scales.R index c312e085b3..4be77ae371 100644 --- a/tests/testthat/test-scales.R +++ b/tests/testthat/test-scales.R @@ -2,10 +2,10 @@ test_that("building a plot does not affect its scales", { dat <- data_frame(x = rnorm(20), y = rnorm(20)) p <- ggplot(dat, aes(x, y)) + geom_point() - expect_length(p$scales$scales, 0) + expect_length(p@scales$scales, 0) ggplot_build(p) - expect_length(p$scales$scales, 0) + expect_length(p@scales$scales, 0) }) test_that("ranges update only for variables listed in aesthetics", { @@ -82,7 +82,7 @@ test_that("position scales are updated by all position aesthetics", { ) base <- ggplot(df, aes(x = 1, y = 1)) + geom_point() - plots <- lapply(aesthetics, function(x) base %+% x) + plots <- lapply(aesthetics, ggplot_add, plot = base) ranges <- lapply(plots, pranges) lapply(ranges, function(range) { @@ -146,18 +146,18 @@ test_that("all-Inf layers are not used for determining the type of scale", { geom_point() b1 <- ggplot_build(p1) - expect_s3_class(b1$layout$panel_scales_x[[1]], "ScaleDiscretePosition") + expect_s3_class(b1@layout$panel_scales_x[[1]], "ScaleDiscretePosition") p2 <- ggplot() + # If the layer non-Inf value, it's considered annotate("rect", xmin = -Inf, xmax = 0, ymin = -Inf, ymax = Inf, fill = "black") b2 <- ggplot_build(p2) - expect_s3_class(b2$layout$panel_scales_x[[1]], "ScaleContinuousPosition") + expect_s3_class(b2@layout$panel_scales_x[[1]], "ScaleContinuousPosition") }) test_that("scales are looked for in appropriate place", { - xlabel <- function(x) ggplot_build(x)$layout$panel_scales_x[[1]]$name + xlabel <- function(x) ggplot_build(x)@layout$panel_scales_x[[1]]$name p0 <- ggplot(mtcars, aes(mpg, wt)) + geom_point() + scale_x_continuous("0") expect_equal(xlabel(p0), "0") @@ -343,12 +343,12 @@ test_that("scale_apply preserves class and attributes", { # Perform identity transformation via `scale_apply` out <- with_bindings(scale_apply( - df, "x", "transform", 1:2, plot$layout$panel_scales_x + df, "x", "transform", 1:2, plot@layout$panel_scales_x )[[1]], `c.baz` = `c.baz`, `[.baz` = `[.baz`, .env = global_env()) # Check that it errors on bad scale ids expect_snapshot_error(scale_apply( - df, "x", "transform", c(NA, 1), plot$layout$panel_scales_x + df, "x", "transform", c(NA, 1), plot@layout$panel_scales_x )) # Check class preservation @@ -362,7 +362,7 @@ test_that("scale_apply preserves class and attributes", { class(df$x) <- "foobar" out <- with_bindings(scale_apply( - df, "x", "transform", 1:2, plot$layout$panel_scales_x + df, "x", "transform", 1:2, plot@layout$panel_scales_x )[[1]], `c.baz` = `c.baz`, `[.baz` = `[.baz`, .env = global_env()) expect_false(inherits(out, "foobar")) @@ -752,7 +752,7 @@ test_that("ViewScales can make fixed copies", { annotate("point", x = 5, y = 10) + scale_x_discrete(labels = c("four-wheel", "forward", "reverse")) - b1 <- ggplot_build(p1)$layout$panel_params[[1]] + b1 <- ggplot_build(p1)@layout$panel_params[[1]] # We build a second plot with the first plot's scales p2 <- ggplot(mpg, aes(drv, cyl)) + diff --git a/tests/testthat/test-stat-bin.R b/tests/testthat/test-stat-bin.R index 3568faa819..27de4ef939 100644 --- a/tests/testthat/test-stat-bin.R +++ b/tests/testthat/test-stat-bin.R @@ -241,19 +241,19 @@ test_that("stat_count throws error when both x and y aesthetic present", { test_that("stat_count preserves x order for continuous and discrete", { # x is numeric b <- ggplot_build(ggplot(mtcars, aes(carb)) + geom_bar()) - expect_identical(b$data[[1]]$x, c(1,2,3,4,6,8)) - expect_identical(b$data[[1]]$y, c(7,10,3,10,1,1)) + expect_identical(b@data[[1]]$x, c(1,2,3,4,6,8)) + expect_identical(b@data[[1]]$y, c(7,10,3,10,1,1)) # x is factor where levels match numeric order mtcars$carb2 <- factor(mtcars$carb) b <- ggplot_build(ggplot(mtcars, aes(carb2)) + geom_bar()) - expect_identical(b$data[[1]]$x, mapped_discrete(1:6)) - expect_identical(b$data[[1]]$y, c(7,10,3,10,1,1)) + expect_identical(b@data[[1]]$x, mapped_discrete(1:6)) + expect_identical(b@data[[1]]$y, c(7,10,3,10,1,1)) # x is factor levels differ from numeric order mtcars$carb3 <- factor(mtcars$carb, levels = c(4,1,2,3,6,8)) b <- ggplot_build(ggplot(mtcars, aes(carb3)) + geom_bar()) - expect_identical(b$data[[1]]$x, mapped_discrete(1:6)) - expect_identical(b$layout$panel_params[[1]]$x$get_labels(), c("4","1","2","3","6","8")) - expect_identical(b$data[[1]]$y, c(10,7,10,3,1,1)) + expect_identical(b@data[[1]]$x, mapped_discrete(1:6)) + expect_identical(b@layout$panel_params[[1]]$x$get_labels(), c("4","1","2","3","6","8")) + expect_identical(b@data[[1]]$y, c(10,7,10,3,1,1)) }) diff --git a/tests/testthat/test-stats.R b/tests/testthat/test-stats.R index f8e8b37f31..6eeeffa938 100644 --- a/tests/testthat/test-stats.R +++ b/tests/testthat/test-stats.R @@ -3,12 +3,12 @@ test_that("plot succeeds even if some computation fails", { p1 <- ggplot(df, aes(x, y)) + geom_point() b1 <- ggplot_build(p1) - expect_length(b1$data, 1) + expect_length(b1@data, 1) p2 <- p1 + stat_summary(fun = function(x) stop("Failed computation")) expect_snapshot_warning(b2 <- ggplot_build(p2)) - expect_length(b2$data, 2) + expect_length(b2@data, 2) }) test_that("error message is thrown when aesthetics are missing", { @@ -45,9 +45,9 @@ test_that("erroneously dropped aesthetics are found and issue a warning", { ) # colour is dropped because group a's colour is not constant (GeomBar$default_aes$colour is NA) - expect_true(all(is.na(b2$data[[1]]$colour))) + expect_true(all(is.na(b2@data[[1]]$colour))) # fill is dropped because group b's fill is not constant - expect_true(all(b2$data[[1]]$fill == "#595959FF")) + expect_true(all(b2@data[[1]]$fill == "#595959FF")) # case 2-1) dropped partially with NA @@ -62,10 +62,10 @@ test_that("erroneously dropped aesthetics are found and issue a warning", { expect_snapshot_warning(b3 <- ggplot_build(p3)) # colour is dropped because group a's colour is not constant (GeomBar$default_aes$colour is NA) - expect_true(all(is.na(b3$data[[1]]$colour))) + expect_true(all(is.na(b3@data[[1]]$colour))) # fill is NOT dropped. Group a's fill is na.value, but others are mapped. expect_equal( - b3$data[[1]]$fill == "#123", + b3@data[[1]]$fill == "#123", c(TRUE, FALSE, FALSE) ) }) diff --git a/tests/testthat/test-theme.R b/tests/testthat/test-theme.R index 9b68ae2b09..ed13058277 100644 --- a/tests/testthat/test-theme.R +++ b/tests/testthat/test-theme.R @@ -19,10 +19,10 @@ test_that("modifying theme element properties with + operator works", { t <- theme_grey() + theme(axis.title.x = element_text(colour = 'red', margin = margin())) expect_identical(t$axis.title.x, element_text(colour = 'red', margin = margin(), vjust = 1)) # Make sure the theme class didn't change or get dropped - expect_s3_class(t, "theme") + expect_s7_class(t, class_theme) # Make sure the element class didn't change or get dropped - expect_s3_class(t$axis.title.x, "element") - expect_s3_class(t$axis.title.x, "element_text") + expect_s7_class(t$axis.title.x, element) + expect_s7_class(t$axis.title.x, element_text) # Modifying an intermediate node works t <- theme_grey() + theme(axis.title = element_text(colour = 'red')) @@ -30,10 +30,10 @@ test_that("modifying theme element properties with + operator works", { # Modifying a root node changes only the specified properties t <- theme_grey() + theme(text = element_text(colour = 'red')) - expect_identical(t$text$colour, 'red') - expect_identical(t$text$family, theme_grey()$text$family) - expect_identical(t$text$face, theme_grey()$text$face) - expect_identical(t$text$size, theme_grey()$text$size) + expect_identical(t$text@colour, 'red') + expect_identical(t$text@family, theme_grey()$text@family) + expect_identical(t$text@face, theme_grey()$text@face) + expect_identical(t$text@size, theme_grey()$text@size) # Descendent is unchanged expect_identical(t$axis.title.x, theme_grey()$axis.title.x) @@ -49,41 +49,45 @@ test_that("modifying theme element properties with + operator works", { t <- theme_grey() + theme() expect_identical(t, theme_grey()) - expect_snapshot(theme_grey() + "asdf", error = TRUE) + expect_snapshot( + theme_grey() + "asdf", + error = TRUE, + variant = substr(as.character(getRversion()), start = 1, stop = 3) + ) }) test_that("adding theme object to ggplot object with + operator works", { ## test with complete theme p <- ggplot(data.frame(x = 1:3), aes(x, x)) + geom_point() + theme_grey() p <- p + theme(axis.title = element_text(size = 20)) - expect_true(p$theme$axis.title$size == 20) + expect_true(p@theme$axis.title@size == 20) # Should update specified properties, but not reset other properties p <- p + theme(text = element_text(colour = 'red')) - expect_true(p$theme$text$colour == 'red') + expect_true(p@theme$text@colour == 'red') tt <- theme_grey()$text - tt$colour <- 'red' - expect_true(tt$inherit.blank) - tt$inherit.blank <- FALSE - expect_identical(p$theme$text, tt) + tt@colour <- 'red' + expect_true(tt@inherit.blank) + tt@inherit.blank <- FALSE + expect_identical(p@theme$text, tt) ## test without complete theme p <- ggplot(data.frame(x = 1:3), aes(x, x)) + geom_point() p <- p + theme(axis.title = element_text(size = 20)) - expect_true(p$theme$axis.title$size == 20) + expect_true(p@theme$axis.title@size == 20) # Should update specified properties, but not reset other properties p <- p + theme(text = element_text(colour = 'red')) - expect_true(p$theme$text$colour == 'red') - expect_null(p$theme$text$family) - expect_null(p$theme$text$face) - expect_null(p$theme$text$size) - expect_null(p$theme$text$hjust) - expect_null(p$theme$text$vjust) - expect_null(p$theme$text$angle) - expect_null(p$theme$text$lineheight) - expect_null(p$theme$text$margin) - expect_null(p$theme$text$debug) + expect_true(p@theme$text@colour == 'red') + expect_null(p@theme$text@family) + expect_null(p@theme$text@face) + expect_null(p@theme$text@size) + expect_null(p@theme$text@hjust) + expect_null(p@theme$text@vjust) + expect_null(p@theme$text@angle) + expect_null(p@theme$text@lineheight) + expect_null(p@theme$text@margin) + expect_null(p@theme$text@debug) ## stepwise addition of partial themes is identical to one-step addition p <- ggplot(data.frame(x = 1:3), aes(x, x)) + geom_point() @@ -95,7 +99,7 @@ test_that("adding theme object to ggplot object with + operator works", { theme(axis.line.x = element_line(color = "blue"), axis.ticks.x = element_line(color = "red")) - expect_identical(p1$theme, p2$theme) + expect_identical(p1@theme, p2@theme) }) test_that("replacing theme elements with %+replace% operator works", { @@ -103,7 +107,7 @@ test_that("replacing theme elements with %+replace% operator works", { t <- theme_grey() %+replace% theme(axis.title.x = element_text(colour = 'red')) expect_identical(t$axis.title.x, element_text(colour = 'red')) # Make sure the class didn't change or get dropped - expect_s3_class(t, "theme") + expect_s7_class(t, class_theme) # Changing an intermediate node works t <- theme_grey() %+replace% theme(axis.title = element_text(colour = 'red')) @@ -114,8 +118,6 @@ test_that("replacing theme elements with %+replace% operator works", { # Adding empty theme() has no effect t <- theme_grey() %+replace% theme() expect_identical(t, theme_grey()) - - expect_snapshot(theme_grey() + "asdf", error = TRUE) }) test_that("calculating theme element inheritance works", { @@ -123,36 +125,34 @@ test_that("calculating theme element inheritance works", { # Check that properties are passed along from axis.title to axis.title.x e <- calc_element('axis.title.x', t) - expect_identical(e$colour, 'red') - expect_false(is.null(e$family)) - expect_false(is.null(e$face)) - expect_false(is.null(e$size)) + expect_identical(e@colour, 'red') + expect_false(is.null(e@family)) + expect_false(is.null(e@face)) + expect_false(is.null(e@size)) # Check that rel() works for relative sizing, and is applied at each level t <- theme_grey(base_size = 12) + theme(axis.title = element_text(size = rel(0.5))) + theme(axis.title.x = element_text(size = rel(0.5))) e <- calc_element('axis.title', t) - expect_identical(e$size, 6) + expect_identical(e@size, 6) ex <- calc_element('axis.title.x', t) - expect_identical(ex$size, 3) + expect_identical(ex@size, 3) # Check that a theme_blank in a parent node gets passed along to children t <- theme_grey() + theme(text = element_blank()) expect_identical(calc_element('axis.title.x', t), element_blank()) # Check that inheritance from derived class works - element_dummyrect <- function(dummy) { # like element_rect but w/ dummy argument - structure(list( - fill = NULL, colour = NULL, dummy = dummy, linewidth = NULL, - linetype = NULL, inherit.blank = FALSE - ), class = c("element_dummyrect", "element_rect", "element")) - } + element_dummyrect <- S7::new_class( + "element_dummyrect", parent = element_rect, + properties = c(element_rect@properties, list(dummy = S7::class_any)) + ) e <- calc_element( "panel.background", theme( - rect = element_rect(fill = "white", colour = "black", linewidth = 0.5, linetype = 1), + rect = element_rect(fill = "white", colour = "black", linewidth = 0.5, linetype = 1, linejoin = "round"), panel.background = element_dummyrect(dummy = 5), complete = TRUE # need to prevent pulling in default theme ) @@ -160,10 +160,10 @@ test_that("calculating theme element inheritance works", { expect_identical( e, - structure(list( - fill = "white", colour = "black", dummy = 5, linewidth = 0.5, linetype = 1, + element_dummyrect( + fill = "white", colour = "black", dummy = 5, linewidth = 0.5, linetype = 1, linejoin = "round", inherit.blank = TRUE # this is true because we're requesting a complete theme - ), class = c("element_dummyrect", "element_rect", "element")) + ) ) # Check that blank elements are skipped in inheritance tree if and only if elements @@ -175,7 +175,7 @@ test_that("calculating theme element inheritance works", { ) e1 <- calc_element("strip.text.x", t) e2 <- calc_element("text", t) - e2$inherit.blank <- FALSE # b/c inherit.blank = TRUE for complete themes + e2@inherit.blank <- FALSE # b/c inherit.blank = TRUE for complete themes expect_identical(e1, e2) theme <- theme_gray() + @@ -201,18 +201,18 @@ test_that("complete and non-complete themes interact correctly with each other", # But for _element properties_, the one on the right modifies the one on the left. t <- theme_bw() + theme(text = element_text(colour = 'red')) expect_true(attr(t, "complete")) - expect_equal(t$text$colour, 'red') + expect_equal(t$text@colour, 'red') # A complete theme object (like theme_bw) always trumps a non-complete theme object t <- theme(text = element_text(colour = 'red')) + theme_bw() expect_true(attr(t, "complete")) - expect_equal(t$text$colour, theme_bw()$text$colour) + expect_equal(t$text@colour, theme_bw()$text@colour) # Adding two non-complete themes: the one on the right modifies the one on the left. t <- theme(text = element_text(colour = 'blue')) + theme(text = element_text(colour = 'red')) expect_false(attr(t, "complete")) - expect_equal(t$text$colour, 'red') + expect_equal(t$text@colour, 'red') }) test_that("complete and non-complete themes interact correctly with ggplot objects", { @@ -221,33 +221,33 @@ test_that("complete and non-complete themes interact correctly with ggplot objec # Check that adding two theme successive theme objects to a ggplot object # works like adding the two theme object to each other p <- ggplot_build(base + theme_bw() + theme(text = element_text(colour = 'red'))) - expect_true(attr(p$plot$theme, "complete")) + expect_true(attr(p@plot@theme, "complete")) # Compare the theme objects, after sorting the items, because item order can differ - pt <- p$plot$theme + pt <- p@plot@theme tt <- theme_bw() + theme(text = element_text(colour = 'red')) pt <- pt[order(names(pt))] tt <- tt[order(names(tt))] expect_identical(pt, tt) p <- ggplot_build(base + theme(text = element_text(colour = 'red')) + theme_bw()) - expect_true(attr(p$plot$theme, "complete")) + expect_true(attr(p@plot@theme, "complete")) # Compare the theme objects, after sorting the items, because item order can differ - pt <- p$plot$theme + pt <- p@plot@theme tt <- theme(text = element_text(colour = 'red')) + theme_bw() pt <- pt[order(names(pt))] tt <- tt[order(names(tt))] expect_identical(pt, tt) p <- ggplot_build(base + theme(text = element_text(colour = 'red', face = 'italic'))) - expect_equal(p$plot$theme$text$colour, "red") - expect_equal(p$plot$theme$text$face, "italic") + expect_equal(p@plot@theme$text@colour, "red") + expect_equal(p@plot@theme$text@face, "italic") p <- ggplot_build(base + theme(text = element_text(colour = 'red')) + theme(text = element_text(face = 'italic'))) - expect_equal(p$plot$theme$text$colour, "red") - expect_equal(p$plot$theme$text$face, "italic") + expect_equal(p@plot@theme$text@colour, "red") + expect_equal(p@plot@theme$text@face, "italic") }) test_that("theme(validate=FALSE) means do not check_element", { @@ -255,16 +255,16 @@ test_that("theme(validate=FALSE) means do not check_element", { bw <- p + theme_bw() red.text <- theme(text = element_text(colour = "red")) bw.before <- bw + theme(animint.width = 500, validate = FALSE) - expect_equal(bw.before$theme$animint.width, 500) + expect_equal(bw.before@theme$animint.width, 500) bw.after <- p + theme(animint.width = 500, validate = FALSE) + theme_bw() - expect_null(bw.after$theme$animint.width) + expect_null(bw.after@theme$animint.width) red.after <- p + theme(animint.width = 500, validate = FALSE) + red.text - expect_equal(red.after$theme$animint.width, 500) + expect_equal(red.after@theme$animint.width, 500) red.before <- p + red.text + theme(animint.width = 500, validate = FALSE) - expect_equal(red.before$theme$animint.width, 500) + expect_equal(red.before@theme$animint.width, 500) }) test_that("theme validation happens at build stage", { @@ -283,9 +283,10 @@ test_that("theme validation happens at build stage", { test_that("incorrect theme specifications throw meaningful errors", { expect_snapshot_error(add_theme(theme_grey(), theme(line = element_rect()))) expect_snapshot_error(calc_element("line", theme(line = element_rect()))) - register_theme_elements(element_tree = list(test = el_def("element_rect"))) + register_theme_elements(element_tree = list(test = el_def(element_rect))) expect_snapshot_error(calc_element("test", theme_gray() + theme(test = element_rect()))) expect_snapshot_error(set_theme("foo")) + reset_theme_settings() }) test_that("element tree can be modified", { @@ -305,7 +306,7 @@ test_that("element tree can be modified", { # things work once we add a new element to the element tree register_theme_elements( - element_tree = list(blablabla = el_def("element_text", "text")) + element_tree = list(blablabla = el_def(element_text, "text")) ) expect_silent(ggplotGrob(p)) @@ -327,31 +328,29 @@ test_that("element tree can be modified", { final_theme <- ggplot2:::plot_theme(p, theme_gray()) e1 <- calc_element("blablabla", final_theme) e2 <- calc_element("text", final_theme) - expect_identical(e1$family, e2$family) - expect_identical(e1$face, e2$face) - expect_identical(e1$size, e2$size) - expect_identical(e1$lineheight, e2$lineheight) - expect_identical(e1$colour, "red") # not inherited from element_text + expect_identical(e1@family, e2@family) + expect_identical(e1@face, e2@face) + expect_identical(e1@size, e2@size) + expect_identical(e1@lineheight, e2@lineheight) + expect_identical(e1@colour, "red") # not inherited from element_text # existing elements can be overwritten - ed <- el_def("element_rect", "rect") + ed <- el_def(element_rect, "rect") register_theme_elements( element_tree = list(axis.title = ed) ) expect_identical(get_element_tree()$axis.title, ed) - reset_theme_settings(reset_current = FALSE) # revert back to defaults + reset_theme_settings() # revert back to defaults }) test_that("all elements in complete themes have inherit.blank=TRUE", { inherit_blanks <- function(theme) { - all(vapply(theme, function(el) { - if (is_theme_element(el) && !is_theme_element(el, "blank")) { - el$inherit.blank - } else { - TRUE - } - }, logical(1))) + all(vapply( + theme, try_prop, + name = "inherit.blank", default = TRUE, + logical(1) + )) } expect_true(inherit_blanks(theme_grey())) expect_true(inherit_blanks(theme_bw())) @@ -393,7 +392,7 @@ test_that("complete plot themes shouldn't inherit from default", { base <- ggplot(data.frame(x = 1), aes(x, x)) + geom_point() ptheme <- plot_theme(base + theme(axis.text.x = element_text(colour = "blue")), default_theme) - expect_equal(ptheme$axis.text.x$colour, "blue") + expect_equal(ptheme$axis.text.x@colour, "blue") ptheme <- plot_theme(base + theme_void(), default_theme) expect_null(ptheme$axis.text.x) @@ -423,14 +422,14 @@ test_that("current theme can be updated with new elements", { # element tree gets merged properly register_theme_elements( abcde = element_text(color = "blue", hjust = 0, vjust = 1), - element_tree = list(abcde = el_def("element_text", "text")) + element_tree = list(abcde = el_def(element_text, "text")) ) e1 <- calc_element("abcde", plot_theme(b2)) e2 <- calc_element("text", plot_theme(b2)) - e2$colour <- "blue" - e2$hjust <- 0 - e2$vjust <- 1 + e2@colour <- "blue" + e2@hjust <- 0 + e2@vjust <- 1 expect_identical(e1, e2) reset_theme_settings() @@ -565,7 +564,7 @@ test_that("Element subclasses are inherited", { test <- combine_elements(poor, rich) expect_s3_class(test, "element_rich") expect_equal( - test[c("colour", "linetype", "linewidth")], + S7::props(test)[c("colour", "linetype", "linewidth")], list(colour = "red", linetype = 3, linewidth = 2) ) @@ -573,7 +572,7 @@ test_that("Element subclasses are inherited", { test <- combine_elements(rich, poor) expect_s3_class(test, "element_rich") expect_equal( - test[c("colour", "linetype", "linewidth")], + S7::props(test)[c("colour", "linetype", "linewidth")], list(colour = "red", linetype = 2, linewidth = 2) ) @@ -585,7 +584,7 @@ test_that("Element subclasses are inherited", { test <- combine_elements(sibling, rich) expect_s3_class(test, "element_sibling") expect_equal( - test[c("colour", "linetype", "linewidth")], + S7::props(test)[c("colour", "linetype", "linewidth")], list(colour = "red", linetype = 3, linewidth = 2) ) @@ -593,7 +592,7 @@ test_that("Element subclasses are inherited", { test <- combine_elements(rich, sibling) expect_s3_class(test, "element_rich") expect_equal( - test[c("colour", "linetype", "linewidth")], + S7::props(test)[c("colour", "linetype", "linewidth")], list(colour = "red", linetype = 2, linewidth = 2) ) }) @@ -620,33 +619,33 @@ test_that("header_family is passed on correctly", { td <- theme_dark(base_family = "x", header_family = "y") test <- calc_element("plot.title", td) - expect_equal(test$family, "y") + expect_equal(test@family, "y") test <- calc_element("plot.subtitle", td) - expect_equal(test$family, "x") + expect_equal(test@family, "x") }) test_that("complete_theme completes a theme", { # `NULL` should match default gray <- theme_gray() new <- complete_theme(NULL, default = gray) - expect_equal(new, gray, ignore_attr = "validate") + expect_equal(S7::S7_data(new), S7::S7_data(gray)) # Elements are propagated new <- complete_theme(theme(axis.line = element_line("red")), gray) - expect_equal(new$axis.line$colour, "red") + expect_equal(new$axis.line@colour, "red") # Missing elements are filled in if default theme is incomplete new <- complete_theme(default = theme()) - expect_s3_class(new$axis.line, "element_blank") + expect_s3_class(new$axis.line, "ggplot2::element_blank") # Registered elements are included register_theme_elements( test = element_text(), - element_tree = list(test = el_def("element_text", "text")) + element_tree = list(test = el_def(element_text, "text")) ) new <- complete_theme(default = gray) - expect_s3_class(new$test, "element_text") + expect_s3_class(new$test, "ggplot2::element_text") reset_theme_settings() }) @@ -983,15 +982,11 @@ test_that("Legends can on all sides of the plot with custom justification", { }) test_that("Strips can render custom elements", { - element_test <- function(...) { - el <- element_text(...) - class(el) <- c("element_test", "element_text", "element") - el - } - element_grob.element_test <- function(element, label = "", x = NULL, y = NULL, ...) { - rectGrob(width = unit(1, "cm"), height = unit(1, "cm")) - } - registerS3method("element_grob", "element_test", element_grob.element_test) + element_test <- S7::new_class("element_test", element_text) + S7::method(element_grob, element_test) <- + function(element, label = "", x = NULL, y = NULL, ...) { + rectGrob(width = unit(1, "cm"), height = unit(1, "cm")) + } df <- data_frame(x = 1:3, y = 1:3, a = letters[1:3]) plot <- ggplot(df, aes(x, y)) + diff --git a/vignettes/articles/faq-axes.Rmd b/vignettes/articles/faq-axes.Rmd index cf88240cfa..8f390fc2e4 100644 --- a/vignettes/articles/faq-axes.Rmd +++ b/vignettes/articles/faq-axes.Rmd @@ -447,6 +447,7 @@ ggplot(mpg, aes(x = cty^2, y = log(hwy, base = 10))) + - If you're already familiar with Markdown and HTML, you might prefer using the [ggtext](https://wilkelab.org/ggtext/) package instead. In Markdown we can write the axis labels as `cty2` and `log10(hwy)` for x and y axes, respectively. Then, we tell ggplot2 to interpret the axis labels as Markdown and not as plain text by setting `axis.title.x` and `axis.title.y` to `ggtext::element_markdown()`. ```{r} +#| eval: false #| fig.alt: "A scatter plot showing the squared city miles per gallon on the #| x-axis versus the base 10 logarithm of highway miles per gallon on the #| y-axis for 234 cars. In the axis titles, the base 10 is indicated in