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CMakeLists.txt
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cmake_minimum_required(VERSION 3.13)
project(_cmd)
set(CMAKE_VERBOSE_MAKEFILE on)
set(ALL_SRC
vendor/pymol-open-source/build/generated/ShaderText.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/hash.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/inthash.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c
vendor/pymol-open-source/layer0/Bezier.cpp
vendor/pymol-open-source/layer0/Block.cpp
vendor/pymol-open-source/layer0/CarveHelper.cpp
vendor/pymol-open-source/layer0/ContourSurf.cpp
vendor/pymol-open-source/layer0/Crystal.cpp
vendor/pymol-open-source/layer0/Err.cpp
vendor/pymol-open-source/layer0/Feedback.cpp
vendor/pymol-open-source/layer0/Field.cpp
vendor/pymol-open-source/layer0/File.cpp
vendor/pymol-open-source/layer0/GFXManager.cpp
vendor/pymol-open-source/layer0/GenericBuffer.cpp
vendor/pymol-open-source/layer0/GraphicsUtil.cpp
vendor/pymol-open-source/layer0/Isosurf.cpp
vendor/pymol-open-source/layer0/Map.cpp
vendor/pymol-open-source/layer0/Match.cpp
vendor/pymol-open-source/layer0/Matrix.cpp
vendor/pymol-open-source/layer0/MemoryDebug.cpp
vendor/pymol-open-source/layer0/MemoryUsage.cpp
vendor/pymol-open-source/layer0/MyPNG.cpp
vendor/pymol-open-source/layer0/Parse.cpp
vendor/pymol-open-source/layer0/Pixmap.cpp
vendor/pymol-open-source/layer0/PostProcess.cpp
vendor/pymol-open-source/layer0/PrintUtils.cpp
vendor/pymol-open-source/layer0/ShaderMgr.cpp
vendor/pymol-open-source/layer0/ShaderPreprocessor.cpp
vendor/pymol-open-source/layer0/ShaderPrg.cpp
vendor/pymol-open-source/layer0/Sphere.cpp
vendor/pymol-open-source/layer0/TTT.cpp
vendor/pymol-open-source/layer0/Tetsurf.cpp
vendor/pymol-open-source/layer0/Texture.cpp
vendor/pymol-open-source/layer0/Tracker.cpp
vendor/pymol-open-source/layer0/Triangle.cpp
vendor/pymol-open-source/layer0/Util.cpp
vendor/pymol-open-source/layer0/Util2.cpp
vendor/pymol-open-source/layer0/Vector.cpp
vendor/pymol-open-source/layer0/Word.cpp
vendor/pymol-open-source/layer0/ccealignmodule.cpp
vendor/pymol-open-source/layer0/marching_cubes.cpp
vendor/pymol-open-source/layer0/os_gl.cpp
vendor/pymol-open-source/layer1/Basis.cpp
vendor/pymol-open-source/layer1/ButMode.cpp
vendor/pymol-open-source/layer1/CGO.cpp
vendor/pymol-open-source/layer1/CGOGL.cpp
vendor/pymol-open-source/layer1/CGORenderer.cpp
vendor/pymol-open-source/layer1/COLLADA.cpp
vendor/pymol-open-source/layer1/Camera.cpp
vendor/pymol-open-source/layer1/Character.cpp
vendor/pymol-open-source/layer1/Color.cpp
vendor/pymol-open-source/layer1/Control.cpp
vendor/pymol-open-source/layer1/Extrude.cpp
vendor/pymol-open-source/layer1/Font.cpp
vendor/pymol-open-source/layer1/FontGLUT.cpp
vendor/pymol-open-source/layer1/FontGLUT8x13.cpp
vendor/pymol-open-source/layer1/FontGLUT9x15.cpp
vendor/pymol-open-source/layer1/FontGLUTHel10.cpp
vendor/pymol-open-source/layer1/FontGLUTHel12.cpp
vendor/pymol-open-source/layer1/FontGLUTHel18.cpp
vendor/pymol-open-source/layer1/FontType.cpp
vendor/pymol-open-source/layer1/Movie.cpp
vendor/pymol-open-source/layer1/Ortho.cpp
vendor/pymol-open-source/layer1/P.cpp
vendor/pymol-open-source/layer1/PConv.cpp
vendor/pymol-open-source/layer1/Picking.cpp
vendor/pymol-open-source/layer1/Pop.cpp
vendor/pymol-open-source/layer1/PyMOLObject.cpp
vendor/pymol-open-source/layer1/Ray.cpp
vendor/pymol-open-source/layer1/Rep.cpp
vendor/pymol-open-source/layer1/Scene.cpp
vendor/pymol-open-source/layer1/SceneMouse.cpp
vendor/pymol-open-source/layer1/ScenePicking.cpp
vendor/pymol-open-source/layer1/SceneRay.cpp
vendor/pymol-open-source/layer1/SceneRender.cpp
vendor/pymol-open-source/layer1/SceneView.cpp
vendor/pymol-open-source/layer1/ScrollBar.cpp
vendor/pymol-open-source/layer1/Seq.cpp
vendor/pymol-open-source/layer1/Setting.cpp
vendor/pymol-open-source/layer1/Shaker.cpp
vendor/pymol-open-source/layer1/SymOp.cpp
vendor/pymol-open-source/layer1/SymOpPConv.cpp
vendor/pymol-open-source/layer1/SymOpTools.cpp
vendor/pymol-open-source/layer1/Symmetry.cpp
vendor/pymol-open-source/layer1/Text.cpp
vendor/pymol-open-source/layer1/TypeFace.cpp
vendor/pymol-open-source/layer1/View.cpp
vendor/pymol-open-source/layer1/Wizard.cpp
vendor/pymol-open-source/layer2/AssemblyHelpers.cpp
vendor/pymol-open-source/layer2/AtomInfo.cpp
vendor/pymol-open-source/layer2/AtomInfoHistory.cpp
vendor/pymol-open-source/layer2/BondTypeHistory.cpp
vendor/pymol-open-source/layer2/CifFile.cpp
vendor/pymol-open-source/layer2/CifMoleculeReader.cpp
vendor/pymol-open-source/layer2/CoordSet.cpp
vendor/pymol-open-source/layer2/DistSet.cpp
vendor/pymol-open-source/layer2/GadgetSet.cpp
vendor/pymol-open-source/layer2/HydrogenAdder.cpp
vendor/pymol-open-source/layer2/MmodTyping.cpp
vendor/pymol-open-source/layer2/MmtfMoleculeReader.cpp
vendor/pymol-open-source/layer2/Mol2Typing.cpp
vendor/pymol-open-source/layer2/MolV3000.cpp
vendor/pymol-open-source/layer2/ObjectAlignment.cpp
vendor/pymol-open-source/layer2/ObjectCGO.cpp
vendor/pymol-open-source/layer2/ObjectCallback.cpp
vendor/pymol-open-source/layer2/ObjectCurve.cpp
vendor/pymol-open-source/layer2/ObjectDist.cpp
vendor/pymol-open-source/layer2/ObjectGadget.cpp
vendor/pymol-open-source/layer2/ObjectGadgetRamp.cpp
vendor/pymol-open-source/layer2/ObjectGroup.cpp
vendor/pymol-open-source/layer2/ObjectMap.cpp
vendor/pymol-open-source/layer2/ObjectMesh.cpp
vendor/pymol-open-source/layer2/ObjectMolecule.cpp
vendor/pymol-open-source/layer2/ObjectMolecule2.cpp
vendor/pymol-open-source/layer2/ObjectMolecule3.cpp
vendor/pymol-open-source/layer2/ObjectSlice.cpp
vendor/pymol-open-source/layer2/ObjectSurface.cpp
vendor/pymol-open-source/layer2/ObjectVolume.cpp
vendor/pymol-open-source/layer2/RepAngle.cpp
vendor/pymol-open-source/layer2/RepCartoon.cpp
vendor/pymol-open-source/layer2/RepCylBond.cpp
vendor/pymol-open-source/layer2/RepDihedral.cpp
vendor/pymol-open-source/layer2/RepDistDash.cpp
vendor/pymol-open-source/layer2/RepDistLabel.cpp
vendor/pymol-open-source/layer2/RepDot.cpp
vendor/pymol-open-source/layer2/RepEllipsoid.cpp
vendor/pymol-open-source/layer2/RepLabel.cpp
vendor/pymol-open-source/layer2/RepMesh.cpp
vendor/pymol-open-source/layer2/RepNonbonded.cpp
vendor/pymol-open-source/layer2/RepNonbondedSphere.cpp
vendor/pymol-open-source/layer2/RepRibbon.cpp
vendor/pymol-open-source/layer2/RepSphere.cpp
vendor/pymol-open-source/layer2/RepSphereGenerate.cpp
vendor/pymol-open-source/layer2/RepSphereImmediate.cpp
vendor/pymol-open-source/layer2/RepSurface.cpp
vendor/pymol-open-source/layer2/RepWireBond.cpp
vendor/pymol-open-source/layer2/Sculpt.cpp
vendor/pymol-open-source/layer2/SculptCache.cpp
vendor/pymol-open-source/layer2/SideChainHelper.cpp
vendor/pymol-open-source/layer2/VFont.cpp
vendor/pymol-open-source/layer3/AtomIterators.cpp
vendor/pymol-open-source/layer3/CifDataValueFormatter.cpp
vendor/pymol-open-source/layer3/Editor.cpp
vendor/pymol-open-source/layer3/Executive.cpp
vendor/pymol-open-source/layer3/ExecutivePython.cpp
vendor/pymol-open-source/layer3/Interactions.cpp
vendor/pymol-open-source/layer3/MaeExportHelpers.cpp
vendor/pymol-open-source/layer3/MoleculeExporter.cpp
vendor/pymol-open-source/layer3/MovieScene.cpp
vendor/pymol-open-source/layer3/PlugIOManager.cpp
vendor/pymol-open-source/layer3/RingFinder.cpp
vendor/pymol-open-source/layer3/Seeker.cpp
vendor/pymol-open-source/layer3/Selector.cpp
vendor/pymol-open-source/layer3/SelectorTmp.cpp
vendor/pymol-open-source/layer3/SpecRec.cpp
vendor/pymol-open-source/layer3/SpecRecSpecial.cpp
vendor/pymol-open-source/layer4/Cmd.cpp
vendor/pymol-open-source/layer4/Menu.cpp
vendor/pymol-open-source/layer4/PopUp.cpp
vendor/pymol-open-source/layer5/PyMOL.cpp
vendor/pymol-open-source/layer5/TestPyMOL.cpp
vendor/pymol-open-source/layer5/main.cpp
vendor/pymol-open-source/ov/src/OVContext.cpp
vendor/pymol-open-source/ov/src/OVHeap.cpp
vendor/pymol-open-source/ov/src/OVHeapArray.cpp
vendor/pymol-open-source/ov/src/OVLexicon.cpp
vendor/pymol-open-source/ov/src/OVOneToAny.cpp
vendor/pymol-open-source/ov/src/OVOneToOne.cpp
vendor/pymol-open-source/ov/src/OVRandom.cpp
vendor/pymol-open-source/ov/src/ov_utility.cpp
)
add_library(_cmd SHARED ${ALL_SRC})
set(ALL_COMP_ARGS
-fopenmp
-std=c++17
)
target_compile_options(_cmd PRIVATE ${ALL_COMP_ARGS})
# Set Python paths manually
find_package(Python3 3.11 EXACT COMPONENTS Development REQUIRED)
set(SHARED_SUFFIX .cpython-311-x86_64-linux-gnu.so)
set_target_properties(_cmd PROPERTIES SUFFIX ${SHARED_SUFFIX})
target_compile_features(_cmd PRIVATE cxx_std_17)
set_target_properties(_cmd PROPERTIES PREFIX "")
set(Venv_Python_EXE ${CMAKE_SOURCE_DIR}/.venv/bin/python)
execute_process(
COMMAND ${Venv_Python_EXE} -c "import numpy; print(numpy.get_include())"
OUTPUT_VARIABLE NUMPY_INCLUDE_DIR
OUTPUT_STRIP_TRAILING_WHITESPACE
)
set (ALL_INC_DIR
vendor/pymol-open-source/include
vendor/pymol-open-source/contrib/uiuc/plugins/include
vendor/pymol-open-source/ov/src
vendor/pymol-open-source/layer0
vendor/pymol-open-source/layer1
vendor/pymol-open-source/layer2
vendor/pymol-open-source/layer3
vendor/pymol-open-source/layer4
vendor/pymol-open-source/layer5
vendor/pymol-open-source/build/generated
vendor/pymol-open-source/contrib/uiuc/plugins/molfile_plugin/src
.venv/lib/python3.12/site-packages/numpy/core/include
vcpkg_installed/x64-linux/include
${Python3_INCLUDE_DIRS}
${NUMPY_INCLUDE_DIR}
)
target_include_directories(_cmd PUBLIC ${ALL_INC_DIR})
add_library(opengl32 STATIC IMPORTED)
set_target_properties(opengl32 PROPERTIES IMPORTED_LOCATION ${CMAKE_SOURCE_DIR}/pre-built/libx64/libGL.so)
find_package(freetype CONFIG REQUIRED)
find_package(glew CONFIG REQUIRED)
find_package(PNG CONFIG REQUIRED)
find_package(libxml2 CONFIG REQUIRED)
find_package(netCDF CONFIG REQUIRED)
target_link_options(_cmd PRIVATE -fopenmp)
target_link_directories(_cmd PRIVATE ${CMAKE_SOURCE_DIR}/vcpkg_installed/x64-linux/lib)
target_link_libraries(
_cmd PRIVATE
freetype opengl32 GLEW PNG::PNG xml2 netCDF::netcdf Python3::Python
)
set(ALL_DEF
_PYMOL_LIBPNG
_PYMOL_FREETYPE
PYMOL_OPENMP
_PYMOL_VMD_PLUGINS
#_HAVE_LIBXML # I had problems compiling with this flag on.
_PYMOL_NO_MSGPACKC
_PYMOL_NO_MAIN
_PYMOL_NUMPY
)
target_compile_definitions(_cmd PUBLIC ${ALL_DEF})
install(TARGETS _cmd DESTINATION pymol)