Building Basic Workflows

Day 1

Create the environments using yaml files and conda

conda create -f <yaml_name>.yml -n <env_name>

Day 2

• Check if package exists in channels (bioconda)

conda search <pagkage_name> -c bioconda 

Remove virtual environments created from yaml files

You need to type the -p that specifies a path, and the full path of the virtual environment

conda remove -p /envs/env_name --all

Key takeaways

1. Create different environments and install packages using yaml files.
2. Create a workflow from running one script in bash.
3. Connect the variables by defining them from the main script.