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@FertigLab

FertigLab

Software projects in computational biology and bioinformatics in Elana Fertig's lab in Oncology Biostatistics and Bioinformatics at JHMI

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  1. CoGAPS CoGAPS Public

    Bayesian MCMC matrix factorization algorithm

    C++ 69 17

  2. pycogaps pycogaps Public

    python API to the CoGAPS NMF package

    Python 19 6

  3. CancerInSilico CancerInSilico Public

    An R package for running cell-based models

    C++ 8 1

  4. SingleCellTimeCourse SingleCellTimeCourse Public

    Head and neck cancer rna velocity scripts

    Jupyter Notebook 7 2

  5. scatterHatch scatterHatch Public

    R 7 4

  6. GeneosCollaboration GeneosCollaboration Public

    Repository for R code for single cell sequencing analysis published in Yarchoan, M., Gane, E.J., Marron, T.U. et al. Personalized neoantigen vaccine and pembrolizumab in advanced hepatocellular car…

    R 7 1

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