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1. STdeconvolve STdeconvolve Public

   Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

   R 131 17

2. STalign STalign Public

   Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

   HTML 79 21

3. CRAWDAD CRAWDAD Public

   Cell-type Relationship Analysis Workflow Done Across Distances

   R 31 5

4. veloviz veloviz Public

   RNA-velocity informed embeddings for visualizing cellular trajectories

   R 43 3

5. MERINGUE MERINGUE Public

   characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

   R 74 5

6. HoneyBADGER HoneyBADGER Public

   HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

   R 97 31