v0.6.0a1

🐛 Bug Fixes

• use pyvista to resample VTU files onto a grid

v0.6.0a0

✨ Features

• add to/from_zarr (without CIPHERGeometry support for now

v0.5.1a4

🐛 Bug Fixes

• more reasonable time in notebook examples

v0.5.1a3

🐛 Bug Fixes

• clear notebook outputs
• interface width is now expected within the interface definitions

v0.5.1a2

✨ Features

• support separate text files for mappings

🐛 Bug Fixes

• DefDAP uses P=+1 for quat ops where we were assuming P=-1
• tests
• try indenting
• func args
• func args

v0.5.1a1

✨ Features

• use DefDAP to compute CIPHERGeometry.misorientation_matrix - much faster

v0.5.1a0

🐛 Bug Fixes

• cast pyvista_ndarray to numpy ndarray
• get_time_linear_subset_indices should return primitive types
• get_incremental_data if original_viz dir exists

v0.5.0

♻ Code Refactoring

• show_interface_energies_by_misorientation to plot mobility and/or energy
• return ori range and idx from sample_from_orientations_gradient

✨ Features

• add IPF_z data label type to CIPHERGeometry.get_slice
• add discrete_colours arg to CIPHERGeometry.show_slice
• add interface data label type to CIPHERGeometry.get_slice
• add CIPHERGeometry.show_relative_misorientation
• plot energy and/or mobility in generate_interface_energies_plot
• add VoxelMap.get_interface_voxels
• add CIPHEROutput.get_average_radius_evolution
• add discrete_colours arg to CIPHEROutput.show_slice_evolution
• support multiple interface_binning base interfaces
• allow energy or/and mobility ranges in bin_interfaces_by_misorientation_angle
• add CIPHERGeometry get/show_interface_energies_by_misorientation
• add CIPHERGeometry get/show_interface_energies_by_misorientation
• add increment and incremental_data_idx to CIPHERGeometry
• show sim time on show_phase_size_dist_evolution x-axis
• allow passing CIPHERInput to CIPHEROutput init

🐛 Bug Fixes

• demo_cipher_inputs notebook
• CIPHERGeometry.from_JSON.from_JSON array casting
• index problem in CIPHERGeometry.phase_orientation setter
• CIPHERGeometry track is_periodic
• VoxelMap.get_interface_idx and VoxelMap.get_neighbour_region when not periodic

👷 Build changes

• update deps
• fix deps problems
• update poetry lock

✨ Features

• add ability to sample orientations from a linear orientation gradient

🐛 Bug Fixes

• CIPHEROutput.to_JSON and CIPHERGeometry._get_phase_orientation

♻ Code Refactoring

• separate move classes into own modules
• move CIPHERGeometry to its own module

✨ Features

• add CIPHEROutput.show_slice_evolution and supporting code
• identify grain boundaries in CIPHERGeometry
• add VoxelMap.get_coordinates
• CIPHEROutput.get_geometry to load an evolved geometry
• add CIPHERGeometry.get_slice and .show_slice
• allow loading CIPHERGeometry where some phases are missing
• add quiet bool arg to suppress some prints
• initial add of bin_interfaces_by_misorientation_angle

🐛 Bug Fixes

• _geometries assignment
• add CIPHEROutput.geometries prop
• CIPHERGeometry to/from JSON with GBs
• exception message in CIPHERGeometry init
• generate_VTI_files_from_VTU_files for 2D geometries
• pandas deprecation warning: append -> concatentate

👷 Build changes

• merge from remote

✨ Features

• add grain_boundary_mobility empirical form
• support saving outputs via time increment
• save misori matrix
• add compare_phase_size_dist_evolution
• add bin_size to show_phase_size_dist_evo
• add max_increments opt to show_phase_size_dist_evolution
• add read_input_YAML_string
• add option to show size dist as prob
• add CIPHERGeometry.write_VTK; fix #35
• select orientations when assigning phases
• add options to CIPHEROutput
• add derived outputs
• add show_phase_size_dist_evolution
• add CIPHEROutput
• read YAML file back in
• set int phase_pairs on _get_interface_map
• add eq to CIPHERInput classes
• add is_periodic to voronoi gen

🐛 Bug Fixes

• CIPHERGeometry.from_JSON
• failing round trip test
• parse type label in CIPHERInput from YAML
• glob specificity for VTK search
• better output options naming
• get_subset_indices
• more robust VTK subset selector
• CIPHERInput from YAML with unused interface
• decompress array empty line bug

👷 Build changes

• constrain ipywidgets
• deps update
• deps
• merge branch 'aplowman/develop' of https://github.com/LightForm-group/cipher-parse into aplowman/develop
• update deps
• add notebook extras
• add optional matflow extra dep

v0.5.0a3

♻ Code Refactoring

• show_interface_energies_by_misorientation to plot mobility and/or energy
• return ori range and idx from sample_from_orientations_gradient

✨ Features

• add IPF_z data label type to CIPHERGeometry.get_slice
• add discrete_colours arg to CIPHERGeometry.show_slice
• add interface data label type to CIPHERGeometry.get_slice
• add CIPHERGeometry.show_relative_misorientation
• plot energy and/or mobility in generate_interface_energies_plot
• add VoxelMap.get_interface_voxels
• add CIPHEROutput.get_average_radius_evolution
• add discrete_colours arg to CIPHEROutput.show_slice_evolution
• support multiple interface_binning base interfaces
• allow energy or/and mobility ranges in bin_interfaces_by_misorientation_angle
• add CIPHERGeometry get/show_interface_energies_by_misorientation
• add CIPHERGeometry get/show_interface_energies_by_misorientation
• add increment and incremental_data_idx to CIPHERGeometry
• show sim time on show_phase_size_dist_evolution x-axis
• allow passing CIPHERInput to CIPHEROutput init

🐛 Bug Fixes

• demo_cipher_inputs notebook
• CIPHERGeometry.from_JSON.from_JSON array casting
• index problem in CIPHERGeometry.phase_orientation setter
• CIPHERGeometry track is_periodic
• VoxelMap.get_interface_idx and VoxelMap.get_neighbour_region when not periodic

👷 Build changes

• update deps
• fix deps problems
• update poetry lock

v0.5.0a2

✨ Features

• add ability to sample orientations from a linear orientation gradient

🐛 Bug Fixes

• CIPHEROutput.to_JSON and CIPHERGeometry._get_phase_orientation