Reproduce Nabiximols case study

[sunxd3]

https://users.aalto.fi/~ave/casestudies/Nabiximols/nabiximols.html

[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

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[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

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	]
	cu = [
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[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

	cu_df = DataFrame(id=id, group=group, week=week, cu=cu)
	cu_df = DataFrame(; id=id, group=group, week=week, cu=cu)

[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

	@df cu_df_filtered groupedhist(:cu,
	@df cu_df_filtered groupedhist(
	:cu,

[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

	size=(1000, 500)
	size=(1000, 500),

[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

	histogram(all_samples, title="All Prior Predictive Samples",
	xlabel="Value", ylabel="Frequency",
	legend=false, alpha=0.7)
	histogram(
	all_samples;
	title="All Prior Predictive Samples",
	xlabel="Value",
	ylabel="Frequency",
	legend=false,
	alpha=0.7,
	)

[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

	id=df.id
	id=df.id,

[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

	discard_initial=n_adapts
	discard_initial=n_adapts,

[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

	plot_rank(
	data
	)
	plot_rank(data)

[github-actions]

[JuliaFormatter] _{reported by reviewdog 🐶}

Suggested change

	# simulation based calibration
	# simulation based calibration

[github-actions]

JuliaBUGS.jl documentation for PR #298 is available at:
https://TuringLang.github.io/JuliaBUGS.jl/previews/PR298/

[coveralls]

Pull Request Test Coverage Report for Build 15049194373

Details

• 0 of 0 changed or added relevant lines in 0 files are covered.
• No unchanged relevant lines lost coverage.
• Overall coverage remained the same at 83.518%

---

Totals
Change from base Build 15044384247:	0.0%
Covered Lines:	2108
Relevant Lines:	2524

---

💛 - Coveralls

[github-actions]

Benchmark results on macOS (aarch64)

BridgeStan not found at location specified by $BRIDGESTAN environment variable, downloading version 2.6.2 to /Users/runner/.bridgestan/bridgestan-2.6.2
Done!

Stan results:

Model	Parameters	Density Time (µs)	Density+Gradient Time (µs)
rats	65	5.0334	7.20833
pumps	12	0.823935	0.921296
bones	13	74.208	84.5
oxford	244	10.4165	13.25
epil	303	34.292	37.4795
lsat	1006	106.083	151.667
schools	133	235.458	390.959
beetles	2	0.766447	0.842438
air	5	0.823212	0.9333

JuliaBUGS Mooncake results:

Model	Parameters	Density Time (µs)	Density+Gradient Time (µs)
rats	65	1.25415	7.97233
pumps	12	0.478407	2.04165
bones	33	67.625	357.333
oxford	244	19.833	53.541
epil	303	7.29175	34.792
lsat	1006	51.084	227.625
schools	133	92.167	820.625
beetles	2	0.876273	3.59375
air	5	0.252496	1.11538

---

Benchmark results on Ubuntu (x64)

BridgeStan not found at location specified by $BRIDGESTAN environment variable, downloading version 2.6.2 to /home/runner/.bridgestan/bridgestan-2.6.2
Done!

Stan results:

Model	Parameters	Density Time (µs)	Density+Gradient Time (µs)
rats	65	5.2278	7.61767
pumps	12	0.9601	1.20304
bones	13	72.846	90.419
oxford	244	13.8955	17.994
epil	303	27.531	33.9685
lsat	1006	164.827	206.04
schools	133	529.272	769.335
beetles	2	0.852471	0.996345
air	5	0.66475	0.79527

JuliaBUGS Mooncake results:

Model	Parameters	Density Time (µs)	Density+Gradient Time (µs)
rats	65	1.91723	13.931
pumps	12	0.593959	2.417
bones	33	48.951	367.185
oxford	244	23.674	72.375
epil	303	10.925	56.084
lsat	1006	89.898	366.935
schools	133	103.638	1087.47
beetles	2	1.10435	4.63017
air	5	0.341773	1.36729