nipy · effigies · Oct 31, 2024 · Mar 20, 2024 · Mar 21, 2024 · May 6, 2024
diff --git a/.git-blame-ignore-revs b/.git-blame-ignore-revs
@@ -1,3 +1,11 @@
+# Thu Oct 31 10:01:38 2024 -0400 - effigies@gmail.com - STY: black [ignore-rev]
+bd0d5856d183ba3918eda31f80db3b1d4387c55c
+# Thu Mar 21 13:34:09 2024 -0400 - effigies@gmail.com - STY: black [ignore-rev]
+c52fece0cf154c1a93a55b202d088f08924a023e
+# Sun Mar 17 10:58:12 2024 -0400 - effigies@gmail.com - STY: black [ignore-rev]
+e447b92bcb3b9ed9e35394d6edef1d91b7c424e6
+# Sun Mar 17 10:44:57 2024 -0400 - effigies@gmail.com - STY: black
+f1a8909d233ed2a707b6ee8937504eea9ee7f154
 # Tue Feb 27 14:28:18 2024 -0500 - effigies@gmail.com - STY: black 2024.2 [ignore-rev]
 f1cbc1c941f8d02659f8ef245aac0862efb80ccf
 # Mon Sep 11 13:36:40 2023 +0200 - 37933899+servoz@users.noreply.github.com - run black for nipype/interfaces/spm/preprocess.py

diff --git a/.github/workflows/tutorials.yml b/.github/workflows/tutorials.yml
@@ -18,7 +18,7 @@ jobs:
     steps:
       - name: Start time
         id: start
-        run: echo "::set-output name=start_time::$(date +'%Y-%m-%dT%H:%M:%S%z')"
+        run: echo start_time=$(date +'%Y-%m-%dT%H:%M:%S%z') >> $GITHUB_OUTPUT
       - name: Trigger Nipype tutorial Github Action
         run: |
           set -x
@@ -38,7 +38,7 @@ jobs:
 
           # fail if not extracted
           [[ -n $RUN_ID ]] || exit 1
-          echo "::set-output name=run_id::$RUN_ID"
+          echo run_id=$RUN_ID >> $GITHUB_OUTPUT
       - name: Check if action completed
         timeout-minutes: 120
         run: |

diff --git a/.mailmap b/.mailmap
@@ -1,10 +1,10 @@
 Abel A. González Orozco <glez.orzco@gmail.com>
 Aimi Watanabe <watanabe.aimi@gmail.com>
 Aimi Watanabe <watanabe.aimi@gmail.com> stymy <rschadmin@cmi-rsch-li002.childmind.org>
-Alejandro Tabas <alextabas@gmail.com>
-Alejandro Tabas <alextabas@gmail.com> <qtabas@gmail.com>
 Alejandro de la Vega <aleph4@gmail.com>
 Alejandro de la Vega <aleph4@gmail.com> <delavega@utexas.edu>
+Alejandro Tabas <alextabas@gmail.com>
+Alejandro Tabas <alextabas@gmail.com> <qtabas@gmail.com>
 Alexander Schaefer <alexschaefer83@gmail.com>
 Alexander Schaefer <alexschaefer83@gmail.com> <aschaefer@aschaefer-U36SD.(none)>
 Alexander Schaefer <alexschaefer83@gmail.com> <aschaefer@melisse.cbs.mpg.de>
@@ -65,9 +65,12 @@ Dylan M. Nielson <adenosine@gmail.com>
 Dylan M. Nielson <adenosine@gmail.com> <Dylan.Nielson@nih.gov>
 Eduard Ort <e.ort@vu.nl>
 Elizabeth DuPre <emd222@cornell.edu>
+Emmanuelle Gourieux <47973414+manuegrx@users.noreply.github.com>
+Eric Condamine <econdami@yahoo.fr>
+Eric Condamine <econdami@yahoo.fr> <37933899+servoz@users.noreply.github.com>
 Erik Ziegler <erik.sweed@gmail.com>
-Erik Ziegler <erik.sweed@gmail.com> <erik.ziegler@ulg.ac.be>
 Erik Ziegler <erik.sweed@gmail.com> <erik@erik-ubuntu.(none)>
+Erik Ziegler <erik.sweed@gmail.com> <erik.ziegler@ulg.ac.be>
 Fabio Bernardoni <fabio.bernardoni@uniklinikum-dresden.de>
 Fabio Bernardoni <fabio.bernardoni@uniklinikum-dresden.de> <fb.brnrdn@gmail.com>
 Feilong Ma <mafeilong@gmail.com>
@@ -76,7 +79,8 @@ Franz Liem <franz.liem@gmail.com>
 Franz Liem <franz.liem@gmail.com> <franz.liem>
 Fred Loney <loneyf@ohsu.edu>
 Gael Varoquaux <gael.varoquaux@normalesup.org>
-Gal Ben-Zvi <hershkovitz1@mail.tau.ac.il>
+Gal Kepler <galkepler@gmail.com>
+Gal Kepler <galkepler@gmail.com> <hershkovitz1@mail.tau.ac.il>
 Gavin Cooper <Gavin.Cooper@newcastle.edu.au> <gjcooper@gmail.com>
 Ghislain Vaillant <ghislain.vaillant@icm-institute.org>
 Ghislain Vaillant <ghislain.vaillant@icm-institute.org> <ghisvail@users.noreply.github.com>
@@ -96,11 +100,11 @@ Janosch Linkersdörfer <linkersdoerfer@gmail.com>
 Jason Wong <jf126dolphin@gmail.com>
 Jason Wong <jf126dolphin@gmail.com> <jasonwong73@ucla.edu>
 Jens Kleesiek <kleesiek@uni-heidelberg.de>
-Jessica Forbes <jessica-forbes@uiowa.edu>
 Jérémy Guillon <jeremy.guillon@inria.fr> <jeremy.guillon@etu.upmc.fr>
-Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <Stadler@lin-magdeburg.de>
+Jessica Forbes <jessica-forbes@uiowa.edu>
 Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <joerg.stadler@lin-magdeburg.de>
 Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <jstadler@ilin-magdeburg.de>
+Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <Stadler@lin-magdeburg.de>
 John A. Lee <johnleenimh@gmail.com>
 John A. Lee <johnleenimh@gmail.com> <leej3@users.noreply.github.com>
 Joke Durnez <joke.durnez@gmail.com>
@@ -110,9 +114,9 @@ Junhao WEN <anbai106@hotmail.com>
 Kai Schlamp <schlamp@gmx.de>
 Katherine Bottenhorn <kbott006@fiu.edu>
 Kesshi Jordan <Kesshi.Jordan@ucsf.edu>
-Kesshi Jordan <Kesshi.Jordan@ucsf.edu> <kesshi.jordan@gmail.com>
 Kesshi Jordan <Kesshi.Jordan@ucsf.edu> <kesshijordan@D-108-179-130-38.dhcp4.washington.edu>
 Kesshi Jordan <Kesshi.Jordan@ucsf.edu> <kesshijordan@D-69-91-152-99.dhcp4.washington.edu>
+Kesshi Jordan <Kesshi.Jordan@ucsf.edu> <kesshi.jordan@gmail.com>
 Kesshi Jordan <Kesshi.Jordan@ucsf.edu> <kesshijordan@iPhone-010060104098.ucsf.edu>
 Kesshi Jordan <Kesshi.Jordan@ucsf.edu> <kjordan@codd.radiology.ucsf.edu>
 Kevin Sitek <ksitek@mit.edu>
@@ -122,10 +126,10 @@ Kornelius Podranski <kilo13@web.de>
 Kristofer Montazeri <kristofer.montazeri@gmail.com>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <chris.gorgolewski@gmail.com>
-Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-Precision-M6500.(none)>
-Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-Precision-M6500>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-dtc-laptop>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filolaptop>
+Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-Precision-M6500>
+Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-Precision-M6500.(none)>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <krzysztof.gorgolewski+fake@gmail.com>
 Kshitij Chawla <kc.insight.pi@gmail.com>
 Leonie Lampe <leonie.lampe@gmail.com>
@@ -143,6 +147,8 @@ Matteo Mancini <ingmatteomancini@gmail.com>
 Matteo Visconti di Oleggio Castello <matteo.visconti.gr@dartmouth.edu>
 Matteo Visconti di Oleggio Castello <matteo.visconti.gr@dartmouth.edu> <mvdoc.gr@dartmouth.edu>
 Matthew Cieslak <mattcieslak@gmail.com>
+Maurilio Genovese <mauriliogenovese@gmail.com>
+Maurilio Genovese <mauriliogenovese@gmail.com> <125388969+mauriliogenovese@users.noreply.github.com>
 Michael Clark <michael.clark195@gmail.com> <clarkmg@nih.gov>
 Michael Dayan <mdayan.research@gmail.com>
 Michael Dayan <mdayan.research@gmail.com> <mdayan.comp@gmail.com>
@@ -163,8 +169,8 @@ Oliver Contier <o.contier@gmail.com> <oliver.contier@ovgu.de>
 Olivia Stanley <oliviawstanley@gmail.com>
 Oscar Esteban <code@oscaresteban.es>
 Oscar Esteban <code@oscaresteban.es> <code@oscaresteban>
-Pablo Polosecki <pipolose@us.ibm.com> <pipolose@pipoloses-MacBook-Air.local>
 Pablo Polosecki <pipolose@us.ibm.com> <pipolose@pipoloses-air.watson.ibm.com>
+Pablo Polosecki <pipolose@us.ibm.com> <pipolose@pipoloses-MacBook-Air.local>
 Paul Kuntke <paul@42degreesoffreedom.com>
 Paul Kuntke <paul@42degreesoffreedom.com> <paul@kuntke.de>
 Paul Sharp <psharp1289@gmail.com>
@@ -185,8 +191,8 @@ Serge Koudoro <skab12@gmail.com>
 Sharad Sikka <ssikka25@gmail.com>
 Shariq Iqbal <shariqiqbal2810@gmail.com>
 Shariq Iqbal <shariqiqbal2810@gmail.com> <shariqiqbal2810@users.noreply.github.com>
-Shoshana Berleant <berleant@stanford.edu> <shoshber@users.noreply.github.com>
 Shoshana Berleant <berleant@stanford.edu> Shoshana Berleant <nope>
+Shoshana Berleant <berleant@stanford.edu> <shoshber@users.noreply.github.com>
 Shoshana Berleant <berleant@stanford.edu> Ubuntu <ubuntu@ip-172-31-43-202.us-west-2.compute.internal>
 Simon Rothmei <srothmei@mailbox.tu-berlin.de>
 Simon Rothmei <srothmei@mailbox.tu-berlin.de> <srothmei@users.noreply.github.com>
@@ -210,5 +216,7 @@ Victor Saase <victor@saase.net>
 Weijie Huang <hwjbupt@gmail.com>
 William Triplett <wtriplett@gmail.com> <wtriplett@ufl.edu>
 Wolfgang Pauli <Wolfgang.m.Pauli@gmail.com>
+Wu Jianxiao <jianxiao.wu.veronica@gmail.com>
+Wu Jianxiao <jianxiao.wu.veronica@gmail.com> <vesaveronica@gmail.com>
 Xiangzhen Kong <bnucon@gmail.com>
 Yaroslav Halchenko <debian@onerussian.com> <yoh@dartmouth.edu>
diff --git a/.zenodo.json b/.zenodo.json
@@ -61,6 +61,11 @@
       "name": "Manhães-Savio, Alexandre",
       "orcid": "0000-0002-6608-6885"
     },
+    {
+      "affiliation": "Dartmouth College: Hanover, NH, United States",
+      "name": "Halchenko, Yaroslav O.",
+      "orcid": "0000-0003-3456-2493"
+    },
     {
       "affiliation": "UC Berkeley",
       "name": "Clark, Dav",
@@ -77,17 +82,17 @@
       "orcid": "0000-0002-2666-0969"
     },
     {
-      "affiliation": "Dartmouth College: Hanover, NH, United States",
-      "name": "Halchenko, Yaroslav O.",
-      "orcid": "0000-0003-3456-2493"
+      "affiliation": "Department of Psychology, Stanford University",
+      "name": "Norgaard, Martin",
+      "orcid": "0000-0003-2131-5688"
     },
     {
       "name": "Loney, Fred"
     },
     {
-      "affiliation": "Department of Psychology, Stanford University",
-      "name": "Norgaard, Martin",
-      "orcid": "0000-0003-2131-5688"
+      "affiliation": "CEA",
+      "name": "Papadopoulos Orfanos, Dimitri",
+      "orcid": "0000-0002-1242-8990"
     },
     {
       "affiliation": "Florida International University",
@@ -232,6 +237,11 @@
       "name": "de Hollander, Gilles",
       "orcid": "0000-0003-1988-5091"
     },
+    {
+      "affiliation": "Sagol School of Neuroscience, Tel Aviv University",
+      "name": "Kepler, Gal",
+      "orcid": "0000-0002-5655-9423"
+    },
     {
       "affiliation": "Indiana University, IN, USA",
       "name": "Koudoro, Serge"
@@ -318,11 +328,6 @@
       "name": "Gillman, Ashley",
       "orcid": "0000-0001-9130-1092"
     },
-    {
-      "affiliation": "Sagol School of Neuroscience, Tel Aviv University",
-      "name": "Kepler, Gal",
-      "orcid": "0000-0002-5655-9423"
-    },
     {
       "affiliation": "State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands",
       "name": "Kong, Xiang-Zhen",
@@ -336,6 +341,11 @@
     {
       "name": "Salvatore, John"
     },
+    {
+      "affiliation": "Medical College of Wisconsin",
+      "name": "Espana, Lezlie",
+      "orcid": "0000-0002-6466-4653"
+    },
     {
       "affiliation": "CNRS LTCI, Telecom ParisTech, Université Paris-Saclay",
       "name": "Gramfort, Alexandre",
@@ -363,32 +373,31 @@
       "name": "Schaefer, Alexander",
       "orcid": "0000-0001-6488-4739"
     },
-    {
-      "affiliation": "CEA",
-      "name": "Papadopoulos Orfanos, Dimitri",
-      "orcid": "0000-0002-1242-8990"
-    },
     {
       "affiliation": "UniversityHospital Heidelberg, Germany",
       "name": "Kleesiek, Jens"
     },
+    {
+      "affiliation": "Department of Neurology, BG-University Hospital Bergmannsheil Bochum, Germany",
+      "name": "Butry, Lionel"
+    },
     {
       "affiliation": "Nathan s Kline institute for psychiatric research",
       "name": "Sikka, Sharad"
     },
     {
       "name": "Schwartz, Yannick"
     },
-    {
-      "affiliation": "Medical College of Wisconsin",
-      "name": "Espana, Lezlie",
-      "orcid": "0000-0002-6466-4653"
-    },
     {
       "affiliation": "The University of Iowa",
       "name": "Ghayoor, Ali",
       "orcid": "0000-0002-8858-1254"
     },
+    {
+      "affiliation": "ARAMIS Lab, Paris Brain Institute",
+      "name": "Vaillant, Ghislain",
+      "orcid": "0000-0003-0267-3033"
+    },
     {
       "affiliation": "NIMH IRP",
       "name": "Lee, John A.",
@@ -407,11 +416,6 @@
       "name": "Liem, Franz",
       "orcid": "0000-0003-0646-4810"
     },
-    {
-      "affiliation": "ARAMIS Lab, Paris Brain Institute",
-      "name": "Vaillant, Ghislain",
-      "orcid": "0000-0003-0267-3033"
-    },
     {
       "affiliation": "Neurospin/Unicog/Inserm/CEA",
       "name": "Perez-Guevara, Martin Felipe",
@@ -459,6 +463,11 @@
       "name": "Pérez-García, Fernando",
       "orcid": "0000-0001-9090-3024"
     },
+    {
+      "affiliation": "Azienda Ospedaliero-Universitaria di Modena",
+      "name": "Genovese, Maurilio",
+      "orcid": "0000-0002-8154-8224"
+    },
     {
       "name": "Blair, Ross"
     },
@@ -471,6 +480,11 @@
       "affiliation": "University of Iowa",
       "name": "Welch, David"
     },
+    {
+      "affiliation": "CNRS, UMS3552 IRMaGe",
+      "name": "Condamine, Eric",
+      "orcid": "0000-0002-9533-3769"
+    },
     {
       "affiliation": "Max Planck Institute for Human Cognitive and Brain Sciences",
       "name": "Contier, Oliver",
@@ -546,6 +560,11 @@
       "affiliation": "Boston University",
       "name": "Perkins, L. Nathan"
     },
+    {
+      "affiliation": "Lund University",
+      "name": "Anijärv, Toomas Erik",
+      "orcid": "0000-0002-3650-4230"
+    },
     {
       "name": "Zhou, Dale"
     },
@@ -581,6 +600,11 @@
       "affiliation": "Dept of Medical Biophysics, Univeristy of Western Ontario",
       "name": "Stanley, Olivia"
     },
+    {
+      "affiliation": "Flywheel.io, Minneapolis, MN, USA.",
+      "name": "Velasco, Pablo",
+      "orcid": "0000-0002-5749-6049"
+    },
     {
       "name": "Küttner, René"
     },
@@ -589,6 +613,11 @@
       "name": "Pauli, Wolfgang M.",
       "orcid": "0000-0002-0966-0254"
     },
+    {
+      "affiliation": "Research Centre Juelich",
+      "name": "Wu, Jianxiao",
+      "orcid": "0000-0002-4866-272X"
+    },
     {
       "affiliation": "Weill Cornell Medicine",
       "name": "Xie, Xihe",
@@ -623,11 +652,6 @@
       "name": "Margulies, Daniel S.",
       "orcid": "0000-0002-8880-9204"
     },
-    {
-      "affiliation": "CNRS, UMS3552 IRMaGe",
-      "name": "Condamine, Eric",
-      "orcid": "0000-0002-9533-3769"
-    },
     {
       "affiliation": "Dartmouth College",
       "name": "Ma, Feilong",
@@ -696,6 +720,11 @@
       "name": "Van, Andrew",
       "orcid": "0000-0002-8787-0943"
     },
+    {
+      "affiliation": "Department of Psychological and Brain Sciences, Dartmouth College",
+      "name": "Petre, Bogdan",
+      "orcid": "0000-0002-8437-168X"
+    },
     {
       "affiliation": "MPI-CBS; McGill University",
       "name": "Steele, Christopher John",
@@ -751,6 +780,11 @@
     {
       "name": "Modat, Marc"
     },
+    {
+      "affiliation": "University of Tübingen and MPI for Biological Cybernertics",
+      "name": "Bannert, Michael M.",
+      "orcid": "0000-0003-1010-7517"
+    },
     {
       "affiliation": "University of Waterloo",
       "name": "Mukhometzianov, Rinat",
@@ -849,11 +883,6 @@
       "name": "Pannetier, Nicolas",
       "orcid": "0000-0002-0744-5155"
     },
-    {
-      "affiliation": "Flywheel.io, Minneapolis, MN, USA.",
-      "name": "Velasco, Pablo",
-      "orcid": "0000-0002-5749-6049"
-    },
     {
       "affiliation": "Max Planck Institute for Human Cognitive and Brain Sciences",
       "name": "Numssen, Ole",
@@ -891,30 +920,6 @@
       "name": "Mihai, Paul Glad",
       "orcid": "0000-0001-5715-6442"
     },
-    {
-      "affiliation": "University of Tübingen and MPI for Biological Cybernertics",
-      "name": "Bannert, Michael M.",
-      "orcid": "0000-0003-1010-7517"
-    },
-    {
-      "affiliation": "Research Centre Juelich",
-      "name": "Wu, Jianxiao",
-      "orcid": "0000-0002-4866-272X"
-    },
-    {
-      "affiliation": "Department of Neurology, BG-University Hospital Bergmannsheil Bochum, Germany",
-      "name": "Butry, Lionel"
-    },
-    {
-      "affiliation": "Lund University",
-      "name": "Anijärv, Toomas Erik",
-      "orcid": "0000-0002-3650-4230"
-    },
-    {
-      "affiliation": "Azienda Ospedaliero-Universitaria di Modena",
-      "name": "Genovese, Maurilio",
-      "orcid": "0000-0002-8154-8224"
-    },
     {
       "affiliation": "Department of Psychology, Stanford University",
       "name": "Gorgolewski, Krzysztof J.",
@@ -924,11 +929,6 @@
       "affiliation": "MIT, HMS",
       "name": "Ghosh, Satrajit",
       "orcid": "0000-0002-5312-6729"
-    },
-    {
-      "affiliation": "Department of Psychological and Brain Sciences, Dartmouth College",
-      "name": "Petre, Bogdan",
-      "orcid": "0000-0002-8437-168X"
     }
   ],
   "keywords": [

diff --git a/doc/changelog/1.X.X-changelog.rst b/doc/changelog/1.X.X-changelog.rst
@@ -1,3 +1,75 @@
+
+1.9.0 (October 31, 2024)
+========================
+
+New feature release in the 1.9.0 series.
+
+  * FIX: Remove exists=True from fsl.MotionOutliers output that might not exist (https://github.com/nipy/nipype/pull/1428)
+  * FIX: Improve evaluate_connect_function errors across Python versions (https://github.com/nipy/nipype/pull/3655)
+  * FIX: Changed inheritance of TensorMetricsInputSpec (https://github.com/nipy/nipype/pull/3663)
+  * FIX: Add cropped files to dcm2niix output  (https://github.com/nipy/nipype/pull/3609)
+  * FIX: Deduplicate dcm2niix output (https://github.com/nipy/nipype/pull/3610)
+  * FIX: Parse commas in CSV fields (https://github.com/nipy/nipype/pull/3637)
+  * FIX: MRTrix3 change inputs position for MRTransform (https://github.com/nipy/nipype/pull/3611)
+  * FIX: Use out_prefix instead of "w" in spm.Normalize12 (https://github.com/nipy/nipype/pull/3600)
+  * FIX: Fix typo in spm.Normalize12 process (https://github.com/nipy/nipype/pull/3599)
+  * FIX: DWIPreproc issue (https://github.com/nipy/nipype/pull/3596)
+  * FIX: DWIPreproc issue (https://github.com/nipy/nipype/pull/3596)
+  * FIX: Fix bugs with ``fsl_out=True`` and ``lta_out=True`` (https://github.com/nipy/nipype/pull/3583)
+  * FIX: Test failures (https://github.com/nipy/nipype/pull/3587)
+  * FIX: update merge_imgs input type of dcm2niix Node (https://github.com/nipy/nipype/pull/3548)
+  * FIX: update sample_random_points and random_seed type of ProbTrackXBaseInputSpec (https://github.com/nipy/nipype/pull/3556)
+  * FIX: update self.inputs.optimization in outputs for GTMPVC (https://github.com/nipy/nipype/pull/3571)
+  * ENH: Support HDF5 (mat 7.3) SPM.mat files (https://github.com/nipy/nipype/pull/3650)
+  * ENH: FILMGLS gifti output support in surface mode (https://github.com/nipy/nipype/pull/3652)
+  * ENH: Added available inputs for MRTrix3's 5ttgen (https://github.com/nipy/nipype/pull/3658)
+  * ENH: Add functions to mrtrix3 interface (https://github.com/nipy/nipype/pull/3613)
+  * ENH: Update PETsurfer interface (https://github.com/nipy/nipype/pull/3602)
+  * ENH: Add 'hsvs' option to 5ttgen + mrtransform fix (https://github.com/nipy/nipype/pull/3630)
+  * ENH: add STC PVC to PETPVC interface (https://github.com/nipy/nipype/pull/3634)
+  * ENH: Add GenericLabel to ANTS ApplyTransforms. (https://github.com/nipy/nipype/pull/3617)
+  * ENH: Issue 3553 add mvecs to dcm2niix (https://github.com/nipy/nipype/pull/3554)
+  * ENH: add contrast outputs for EstimatedModel  (https://github.com/nipy/nipype/pull/3577)
+  * ENH: Issue 3345: Adding FreeSurfer longitudinal interfaces (https://github.com/nipy/nipype/pull/3529)
+  * ENH: Enable SPM voxel-based FDR (https://github.com/nipy/nipype/pull/3558)
+  * REF: Replace deprecated pkgutil.find_loader with importlib.util.find_spec (https://github.com/nipy/nipype/pull/3692)
+  * REF: io.open() → open() (https://github.com/nipy/nipype/pull/3575)
+  * REF: Stop using deprecated import internally (https://github.com/nipy/nipype/pull/3561)
+  * DOC: Patch doc/conf.py to work with latest ReadTheDocs (https://github.com/nipy/nipype/pull/3691)
+  * DOC/FIX: Fix wrong name, should be al_ea (https://github.com/nipy/nipype/pull/3629)
+  * DOC: Fix typos newly found by codespell (https://github.com/nipy/nipype/pull/3606)
+  * STY: Apply ruff/pycodestyle rules (E) (https://github.com/nipy/nipype/pull/3689)
+  * STY: Apply ruff rules (RUF) again (https://github.com/nipy/nipype/pull/3688)
+  * STY: Apply ruff/Pyflakes rules (F) (https://github.com/nipy/nipype/pull/3681)
+  * STY: Apply ruff/Perflint rules (PERF) again (https://github.com/nipy/nipype/pull/3687)
+  * STY: Apply ruff/flake8-comprehensions preview rules (C4) (https://github.com/nipy/nipype/pull/3686)
+  * STY: Apply ruff/flake8-simplify rules (SIM) (https://github.com/nipy/nipype/pull/3676)
+  * STY: Apply ruff/flake8-bugbear rules (B) (https://github.com/nipy/nipype/pull/3671)
+  * STY: Apply ruff/flake8-comprehensions rules (C4)  (https://github.com/nipy/nipype/pull/3680)
+  * STY: Apply ruff/Perflint rules (PERF) (https://github.com/nipy/nipype/pull/3674)
+  * STY: Apply ruff/flake8-implicit-str-concat rules (ISC) (https://github.com/nipy/nipype/pull/3679)
+  * STY: Apply ruff/flake8-pie rules (PIE) (https://github.com/nipy/nipype/pull/3678)
+  * STY: Apply ruff/flake8-raise rules (RSE) (https://github.com/nipy/nipype/pull/3677)
+  * STY: Apply ruff/flynt rules (FLY) (https://github.com/nipy/nipype/pull/3675)
+  * STY: Apply ruff rules (RUF) (https://github.com/nipy/nipype/pull/3673)
+  * STY: Codespell (https://github.com/nipy/nipype/pull/3672)
+  * STY: Apply ruff/refurb rules (https://github.com/nipy/nipype/pull/3648)
+  * STY: Apply ruff/pyupgrade rules (https://github.com/nipy/nipype/pull/3647)
+  * STY: Adjusted variable names for clarity and codespell false positives (https://github.com/nipy/nipype/pull/3627)
+  * STY: Remove duplicated trait in EddyOutputSpec (https://github.com/nipy/nipype/pull/3568)
+  * STY: Black edits (https://github.com/nipy/nipype/pull/1)
+  * MNT: Replace deprecated imghdr (https://github.com/nipy/nipype/pull/3659)
+  * MNT: Use regular ".now" instead of ".utcnow" with UTC zone (https://github.com/nipy/nipype/pull/3670)
+  * MNT: Apply assorted repo-review rules (https://github.com/nipy/nipype/pull/3682)
+  * MNT: Drop traits upper bound (https://github.com/nipy/nipype/pull/3685)
+  * MNT: Configure dependabot to update GH workflows (https://github.com/nipy/nipype/pull/3597)
+  * MNT: Replace deprecated locale.getdefaultlocale (https://github.com/nipy/nipype/pull/3590)
+  * MNT: Require Python 3.8+, auto-upgrade syntax (https://github.com/nipy/nipype/pull/3588)
+  * CI: Test Python 3.12 support (https://github.com/nipy/nipype/pull/3638)
+  * CI: Test on Python 3.11 (https://github.com/nipy/nipype/pull/3589)
+  * CI/FIX: configure codespell, add workflow, typos fixed (https://github.com/nipy/nipype/pull/3549)
+
+
 1.8.6 (April 05, 2023)
 ======================
 

diff --git a/nipype/info.py b/nipype/info.py
@@ -5,7 +5,7 @@
 
 # nipype version information
 # Remove .dev0 for release
-__version__ = "1.8.7.dev0"
+__version__ = "1.9.0"
 
 
 def get_nipype_gitversion():

diff --git a/tools/update_zenodo.py b/tools/update_zenodo.py
@@ -1,4 +1,12 @@
 #!/usr/bin/env python3
+# /// script
+# requires-python = ">=3.11"
+# dependencies = [
+#     "fuzzywuzzy",
+#     "gitpython",
+#     "python-levenshtein",
+# ]
+# ///
 """Update and sort the creators list of the zenodo record."""
 import git
 import json