vcfdist: Accurately benchmarking phased variant calls

Bioinformatics on GCP, AWS or Azure

A tutorial on structural variant calling for short read sequencing data

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

Comprehensive design of CRISPR gRNAs for nucleases and base editors

Tool to estimate deltas for sequence sets and answer questions about relative contribution

A web application for interactive visualization and exploratory data analysis of variant call matrices

This repository serves as a valuable resource for individuals engaged in data exploration, statistical analysis, and research within the domains of plant breeding, genetics, statistics, and genomics. The purpose of this repository is to share a collection of R codes that can be utilized by others for their own data analysis projects

gapped-kmer based whole genome alignment software

Structural variant calling tutorial using long-reads.

Read-Based Phasing Algorithm with Integrated Multi-Method Support for Enhanced Accuracy

This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!

ML phylogenetic inference for non-model organisms with short reads & assemblies

Analysis of SNP variants, derived from chip array genotyping and HTS sequencing

A GLUE project for hepatitis B virus (HBV).

Sparse factorization framework to integrate GWAS studies and identify shared latent genetic components

NLR-Assembler is a command line tool for improving RenSeq Assemblies using linked-read sequencing by 10x Genomics.

R package for annotating and parsing transposable elements-associated data

A powerful terminal-based bioinformatics tool designed for DNA sequence analysis.

AlphaFold2_Usage_Repository