Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae
Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutrients and the objective function. As published in Metabolites https://doi.org/10.3390/metabo11050257
GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".
Genome-scale metabolic reconstruction of Rhizophagus irregularis
Repository of a genome-scale metabolic model for Saccharomyces cerevisiae
Memote-created repository for Rhodosporidium toruloides model iRhto
Platform for further development of the Arabidopsis core metabolic model
Integration of temperature-dependent constraints into a metabolic model of Arabidopsis thaliana
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